Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0747920 | sp|Q1G3Q4|RITF1_ARATH | 34.356 | 163 | 102 | 3 | 9 | 170 | 2 | 160 | 2.01e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0747920 | A0A072TV38 | 99.351 | 154 | 1 | 0 | 47 | 200 | 1 | 154 | 5.26e-109 | 318 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0747920 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0747920 | Msa1085350 | 0.823181 | 1.590423e-53 | -8.615850e-47 |
| Msa0747920 | Msa1451100 | 0.984217 | 6.358195e-160 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0747920 | MtrunA17_Chr8g0386511 | 99.351 | 154 | 1 | 0 | 47 | 200 | 1 | 154 | 1.01e-112 | 318 |
| Msa0747920 | MtrunA17_Chr5g0434331 | 38.500 | 200 | 100 | 3 | 1 | 200 | 31 | 207 | 1.65e-43 | 144 |
| Msa0747920 | MtrunA17_Chr7g0265291 | 34.483 | 203 | 116 | 6 | 10 | 199 | 4 | 202 | 5.09e-29 | 107 |
| Msa0747920 | MtrunA17_Chr1g0179781 | 32.323 | 198 | 120 | 5 | 13 | 199 | 7 | 201 | 3.39e-27 | 102 |
| Msa0747920 | MtrunA17_Chr2g0297251 | 36.538 | 156 | 94 | 3 | 12 | 166 | 36 | 187 | 7.52e-27 | 102 |
| Msa0747920 | MtrunA17_Chr4g0040071 | 30.303 | 198 | 123 | 6 | 13 | 199 | 15 | 208 | 3.34e-25 | 97.4 |
| Msa0747920 | MtrunA17_Chr4g0065041 | 36.111 | 144 | 87 | 3 | 11 | 153 | 6 | 145 | 3.74e-25 | 98.2 |
| Msa0747920 | MtrunA17_Chr7g0230511 | 31.148 | 183 | 108 | 6 | 13 | 182 | 9 | 186 | 3.88e-25 | 98.2 |
| Msa0747920 | MtrunA17_Chr5g0395181 | 30.412 | 194 | 127 | 5 | 10 | 199 | 18 | 207 | 3.98e-24 | 94.7 |
| Msa0747920 | MtrunA17_Chr5g0411151 | 31.343 | 201 | 119 | 6 | 13 | 199 | 35 | 230 | 1.02e-23 | 94.4 |
| Msa0747920 | MtrunA17_Chr8g0366581 | 30.000 | 200 | 123 | 7 | 13 | 199 | 33 | 228 | 3.48e-22 | 90.1 |
| Msa0747920 | MtrunA17_Chr8g0392151 | 32.432 | 148 | 75 | 5 | 15 | 141 | 15 | 158 | 9.54e-19 | 81.3 |
| Msa0747920 | MtrunA17_Chr2g0320561 | 30.769 | 169 | 102 | 8 | 15 | 171 | 6 | 171 | 9.54e-15 | 70.5 |
| Msa0747920 | MtrunA17_Chr4g0020811 | 29.861 | 144 | 79 | 6 | 15 | 143 | 8 | 144 | 5.27e-13 | 63.9 |
| Msa0747920 | MtrunA17_Chr1g0161601 | 41.975 | 81 | 44 | 2 | 15 | 95 | 50 | 127 | 1.05e-12 | 62.8 |
| Msa0747920 | MtrunA17_Chr2g0308401 | 29.861 | 144 | 79 | 6 | 15 | 143 | 6 | 142 | 1.44e-12 | 62.8 |
| Msa0747920 | MtrunA17_Chr2g0320551 | 32.867 | 143 | 82 | 6 | 15 | 146 | 6 | 145 | 9.37e-12 | 60.8 |
| Msa0747920 | MtrunA17_Chr4g0052451 | 38.095 | 84 | 44 | 2 | 64 | 141 | 10 | 91 | 2.62e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0747920 | AT1G31040.1 | 32.900 | 231 | 106 | 8 | 12 | 199 | 18 | 242 | 6.76e-29 | 108 |
| Msa0747920 | AT2G27930.1 | 36.946 | 203 | 99 | 7 | 10 | 199 | 1 | 187 | 1.89e-28 | 105 |
| Msa0747920 | AT2G27930.4 | 36.946 | 203 | 99 | 7 | 10 | 199 | 1 | 187 | 1.89e-28 | 105 |
| Msa0747920 | AT2G01818.1 | 32.589 | 224 | 123 | 9 | 3 | 200 | 1 | 222 | 7.99e-28 | 105 |
| Msa0747920 | AT5G46710.3 | 33.019 | 212 | 103 | 6 | 13 | 199 | 12 | 209 | 2.01e-27 | 103 |
| Msa0747920 | AT5G46710.1 | 33.019 | 212 | 103 | 6 | 13 | 199 | 28 | 225 | 3.01e-27 | 103 |
| Msa0747920 | AT2G12646.1 | 34.356 | 163 | 102 | 3 | 9 | 170 | 2 | 160 | 2.04e-26 | 102 |
| Msa0747920 | AT2G12646.2 | 34.356 | 163 | 102 | 3 | 9 | 170 | 2 | 160 | 2.04e-26 | 102 |
| Msa0747920 | AT1G32700.1 | 32.195 | 205 | 123 | 6 | 7 | 199 | 6 | 206 | 5.61e-26 | 99.8 |
| Msa0747920 | AT2G12646.3 | 35.000 | 160 | 99 | 3 | 12 | 170 | 2 | 157 | 1.54e-25 | 99.8 |
| Msa0747920 | AT1G76590.1 | 32.787 | 183 | 109 | 6 | 1 | 181 | 6 | 176 | 2.08e-25 | 99.4 |
| Msa0747920 | AT1G43000.2 | 32.407 | 216 | 117 | 8 | 9 | 199 | 12 | 223 | 4.79e-25 | 97.8 |
| Msa0747920 | AT1G43000.1 | 32.407 | 216 | 117 | 8 | 9 | 199 | 5 | 216 | 4.81e-25 | 97.4 |
| Msa0747920 | AT4G17900.2 | 32.143 | 196 | 121 | 5 | 13 | 199 | 20 | 212 | 7.41e-25 | 97.1 |
| Msa0747920 | AT4G17900.1 | 32.143 | 196 | 121 | 5 | 13 | 199 | 34 | 226 | 8.68e-25 | 97.1 |
| Msa0747920 | AT3G60670.1 | 36.296 | 135 | 81 | 3 | 11 | 144 | 5 | 135 | 3.93e-24 | 95.9 |
| Msa0747920 | AT1G21000.1 | 28.511 | 235 | 116 | 9 | 13 | 199 | 16 | 246 | 2.45e-22 | 91.3 |
| Msa0747920 | AT1G21000.2 | 28.511 | 235 | 116 | 9 | 13 | 199 | 13 | 243 | 2.98e-22 | 90.9 |
| Msa0747920 | AT2G27930.3 | 38.462 | 143 | 74 | 5 | 10 | 141 | 1 | 140 | 1.55e-20 | 84.7 |
| Msa0747920 | AT2G27930.2 | 38.462 | 143 | 74 | 5 | 10 | 141 | 1 | 140 | 1.55e-20 | 84.7 |
| Msa0747920 | AT5G46710.2 | 34.507 | 142 | 88 | 4 | 2 | 141 | 17 | 155 | 2.88e-20 | 84.0 |
| Msa0747920 | AT1G32700.2 | 31.765 | 170 | 101 | 5 | 41 | 199 | 2 | 167 | 5.93e-19 | 80.5 |
| Msa0747920 | AT2G27930.5 | 33.793 | 145 | 70 | 4 | 66 | 199 | 61 | 190 | 1.67e-12 | 63.9 |
| Msa0747920 | AT2G27930.6 | 33.793 | 145 | 70 | 4 | 66 | 199 | 61 | 190 | 1.67e-12 | 63.9 |
| Msa0747920 | AT2G01818.2 | 33.121 | 157 | 80 | 7 | 67 | 200 | 4 | 158 | 9.21e-12 | 61.2 |
Find 37 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGACCTTCTTTGGGAAAA+AGG | 0.129448 | 5_2:-852662 | Msa0747920:CDS |
| GGGAACTTCTGGACCTTCTT+TGG | 0.210937 | 5_2:-852670 | Msa0747920:CDS |
| GAAACACAGGAGGGAACTTC+TGG | 0.286766 | 5_2:-852681 | Msa0747920:CDS |
| AAAAGAGCCTCAAGCCAAAT+TGG | 0.306260 | 5_2:+853931 | None:intergenic |
| GGAACTTCTGGACCTTCTTT+GGG | 0.337965 | 5_2:-852669 | Msa0747920:CDS |
| TCAAGTGGTGTTGTGCTAAC+TGG | 0.344627 | 5_2:+852747 | None:intergenic |
| CACCAGATGATATACAATAT+TGG | 0.377985 | 5_2:+853818 | None:intergenic |
| CTCTTCGGGACCTTCCATCC+AGG | 0.401860 | 5_2:-852721 | Msa0747920:CDS |
| TTGATGCTATCTCACTGAAT+TGG | 0.402058 | 5_2:+852991 | None:intergenic |
| ACACCACTTGAGTCCTCTTC+GGG | 0.413177 | 5_2:-852735 | Msa0747920:CDS |
| AACACCACTTGAGTCCTCTT+CGG | 0.418793 | 5_2:-852736 | Msa0747920:CDS |
| CCAGGGTCCTCCTCAGCATC+AGG | 0.432791 | 5_2:-852703 | Msa0747920:CDS |
| TAGTCATCACCTTGCAAGAA+AGG | 0.434907 | 5_2:+852901 | None:intergenic |
| GCACAGTAGCGATATAAATC+AGG | 0.468363 | 5_2:+852924 | None:intergenic |
| GTACTGTACAGATTGCAATA+TGG | 0.468846 | 5_2:-853848 | Msa0747920:CDS |
| CGTAGACTTACAAAAGCAAC+AGG | 0.478767 | 5_2:-853040 | Msa0747920:intron |
| CCTGATGCTGAGGAGGACCC+TGG | 0.491773 | 5_2:+852703 | None:intergenic |
| CTACTGTGCCCTTTCTTGCA+AGG | 0.513621 | 5_2:-852910 | Msa0747920:intron |
| TCTTCGGGACCTTCCATCCA+GGG | 0.514865 | 5_2:-852720 | Msa0747920:CDS |
| TCCTGTGTTTCCTGATGCTG+AGG | 0.533529 | 5_2:+852693 | None:intergenic |
| TGCCAATATTGTATATCATC+TGG | 0.537908 | 5_2:-853820 | Msa0747920:CDS |
| TAAAAGAAGGGAGATCTATG+AGG | 0.542712 | 5_2:+852624 | None:intergenic |
| AGTCATCACCTTGCAAGAAA+GGG | 0.543071 | 5_2:+852902 | None:intergenic |
| GTTCTACTCATCAAATTCGT+AGG | 0.546464 | 5_2:-853885 | Msa0747920:CDS |
| TGTGTTTCCTGATGCTGAGG+AGG | 0.548455 | 5_2:+852696 | None:intergenic |
| ATGCTGAGGAGGACCCTGGA+TGG | 0.559712 | 5_2:+852707 | None:intergenic |
| TGTTGTTGCTCTGAGTGCTA+TGG | 0.578177 | 5_2:-853746 | Msa0747920:CDS |
| TTACAAAAGCAACAGGAAAG+TGG | 0.586060 | 5_2:-853033 | Msa0747920:CDS |
| TCCTCAGCATCAGGAAACAC+AGG | 0.589871 | 5_2:-852694 | Msa0747920:CDS |
| TGAGGAGGACCCTGGATGGA+AGG | 0.592506 | 5_2:+852711 | None:intergenic |
| AATATATAGACATATTTACA+AGG | 0.614023 | 5_2:-853770 | Msa0747920:CDS |
| GCTATCTCACTGAATTGGCG+AGG | 0.635923 | 5_2:+852996 | None:intergenic |
| TCAGCATCAGGAAACACAGG+AGG | 0.659675 | 5_2:-852691 | Msa0747920:CDS |
| GCTAACTGGATCCTCAGACT+CGG | 0.666411 | 5_2:+852761 | None:intergenic |
| GGTCCCGAAGAGGACTCAAG+TGG | 0.687578 | 5_2:+852732 | None:intergenic |
| CAGCATCAGGAAACACAGGA+GGG | 0.689712 | 5_2:-852690 | Msa0747920:CDS |
| CTGGATGGAAGGTCCCGAAG+AGG | 0.694672 | 5_2:+852722 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATATTTATTTGTGTT+TGG | - | chr5_2:853198-853217 | Msa0747920:intron | 10.0% |
| !! | ATATATTGTATGTTTAATAT+GGG | + | chr5_2:853282-853301 | None:intergenic | 10.0% |
| !! | AATATATTGTATGTTTAATA+TGG | + | chr5_2:853283-853302 | None:intergenic | 10.0% |
| !! | AAATTATATTTATTTGTGTT+TGG | - | chr5_2:853198-853217 | Msa0747920:intron | 10.0% |
| !! | ATATATTGTATGTTTAATAT+GGG | + | chr5_2:853282-853301 | None:intergenic | 10.0% |
| !! | AATATATTGTATGTTTAATA+TGG | + | chr5_2:853283-853302 | None:intergenic | 10.0% |
| !!! | TATCTTTACATATTTTTACA+TGG | - | chr5_2:852861-852880 | Msa0747920:intron | 15.0% |
| !!! | TATATATTTTCAGTATTTTG+TGG | + | chr5_2:853679-853698 | None:intergenic | 15.0% |
| !! | AATATATAGACATATTTACA+AGG | - | chr5_2:853691-853710 | Msa0747920:intron | 15.0% |
| !!! | TATCTTTACATATTTTTACA+TGG | - | chr5_2:852861-852880 | Msa0747920:intron | 15.0% |
| !!! | TATATATTTTCAGTATTTTG+TGG | + | chr5_2:853679-853698 | None:intergenic | 15.0% |
| !! | AATATATAGACATATTTACA+AGG | - | chr5_2:853691-853710 | Msa0747920:intron | 15.0% |
| !! | AATATTCAATTAAAACTCCT+TGG | - | chr5_2:852605-852624 | Msa0747920:exon | 20.0% |
| !!! | ATAGATAAGCTCTTAAATTT+TGG | - | chr5_2:852698-852717 | Msa0747920:CDS | 20.0% |
| !!! | TGAATATGAAGTACTTTATT+AGG | - | chr5_2:852763-852782 | Msa0747920:CDS | 20.0% |
| !!! | AAGATTTTCAAAGATAAACA+TGG | + | chr5_2:852917-852936 | None:intergenic | 20.0% |
| !!! | AATCATGCTTTAAAATGAAT+TGG | + | chr5_2:852987-853006 | None:intergenic | 20.0% |
| !! | ATATGTTAATTAGCATACAT+TGG | + | chr5_2:853345-853364 | None:intergenic | 20.0% |
| !!! | CTTTTGAGAGAAAATTATTT+TGG | - | chr5_2:853548-853567 | Msa0747920:intron | 20.0% |
| !! | TTGTATGTTGAAAAATGAAA+AGG | - | chr5_2:854104-854123 | Msa0747920:intron | 20.0% |
| !! | TGTATGTTGAAAAATGAAAA+GGG | - | chr5_2:854105-854124 | Msa0747920:intron | 20.0% |
| !!! | AAAAATTCATGTTTTTGTCT+AGG | - | chr5_2:854181-854200 | Msa0747920:intron | 20.0% |
| !! | GAGTTATTTGTAATTAAGTA+GGG | + | chr5_2:854290-854309 | None:intergenic | 20.0% |
| !! | AGAGTTATTTGTAATTAAGT+AGG | + | chr5_2:854291-854310 | None:intergenic | 20.0% |
| !! | ACATAGTAAAAAAATTGGTT+CGG | + | chr5_2:854377-854396 | None:intergenic | 20.0% |
| !! | CAAACACATAGTAAAAAAAT+TGG | + | chr5_2:854382-854401 | None:intergenic | 20.0% |
| !!! | CAATTTTTTTACTATGTGTT+TGG | - | chr5_2:854380-854399 | Msa0747920:intron | 20.0% |
| !!! | TTTTTATCTGAATTTTCATC+AGG | - | chr5_2:854656-854675 | Msa0747920:intron | 20.0% |
| !! | AATATTCAATTAAAACTCCT+TGG | - | chr5_2:852605-852624 | Msa0747920:exon | 20.0% |
| !!! | ATAGATAAGCTCTTAAATTT+TGG | - | chr5_2:852698-852717 | Msa0747920:CDS | 20.0% |
| !!! | TGAATATGAAGTACTTTATT+AGG | - | chr5_2:852763-852782 | Msa0747920:CDS | 20.0% |
| !!! | AAGATTTTCAAAGATAAACA+TGG | + | chr5_2:852917-852936 | None:intergenic | 20.0% |
| !!! | AATCATGCTTTAAAATGAAT+TGG | + | chr5_2:852987-853006 | None:intergenic | 20.0% |
| !! | ATATGTTAATTAGCATACAT+TGG | + | chr5_2:853345-853364 | None:intergenic | 20.0% |
| !!! | CTTTTGAGAGAAAATTATTT+TGG | - | chr5_2:853548-853567 | Msa0747920:intron | 20.0% |
| !! | TTGTATGTTGAAAAATGAAA+AGG | - | chr5_2:854104-854123 | Msa0747920:intron | 20.0% |
| !! | TGTATGTTGAAAAATGAAAA+GGG | - | chr5_2:854105-854124 | Msa0747920:intron | 20.0% |
| !!! | AAAAATTCATGTTTTTGTCT+AGG | - | chr5_2:854181-854200 | Msa0747920:intron | 20.0% |
| !! | GAGTTATTTGTAATTAAGTA+GGG | + | chr5_2:854290-854309 | None:intergenic | 20.0% |
| !! | AGAGTTATTTGTAATTAAGT+AGG | + | chr5_2:854291-854310 | None:intergenic | 20.0% |
| !! | ACATAGTAAAAAAATTGGTT+CGG | + | chr5_2:854377-854396 | None:intergenic | 20.0% |
| !! | CAAACACATAGTAAAAAAAT+TGG | + | chr5_2:854382-854401 | None:intergenic | 20.0% |
| !!! | CAATTTTTTTACTATGTGTT+TGG | - | chr5_2:854380-854399 | Msa0747920:intron | 20.0% |
| !!! | TTTTTATCTGAATTTTCATC+AGG | - | chr5_2:854656-854675 | Msa0747920:intron | 20.0% |
| ! | GCTTATCTATATCAAAAGAA+CGG | + | chr5_2:852688-852707 | None:intergenic | 25.0% |
| ! | AACAATATTGCGAAGAAATA+TGG | + | chr5_2:852829-852848 | None:intergenic | 25.0% |
| ! | TGGTAGAAACATCTTATTAA+TGG | + | chr5_2:852897-852916 | None:intergenic | 25.0% |
| !!! | ATGCTTTAAAATGAATTGGT+TGG | + | chr5_2:852983-853002 | None:intergenic | 25.0% |
| !!! | CAATATGGAAGTATCAATTT+TGG | - | chr5_2:853166-853185 | Msa0747920:intron | 25.0% |
| !!! | TGGTTTTTTTGTTGTGTTAA+TGG | - | chr5_2:853236-853255 | Msa0747920:intron | 25.0% |
| !!! | TGGTTTTTCAACATTACTTT+GGG | + | chr5_2:853513-853532 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTCAACATTACTT+TGG | + | chr5_2:853514-853533 | None:intergenic | 25.0% |
| ! | GTAATGTTGAAAAACCAATT+TGG | - | chr5_2:853516-853535 | Msa0747920:intron | 25.0% |
| !! | ATATTTTCAGTATTTTGTGG+TGG | + | chr5_2:853676-853695 | None:intergenic | 25.0% |
| !!! | GAAAAATGAAAAGGGTATTT+TGG | - | chr5_2:854113-854132 | Msa0747920:intron | 25.0% |
| ! | TTGATTTAGAAACTGATCAT+AGG | + | chr5_2:854210-854229 | None:intergenic | 25.0% |
| ! | GCTTATCTATATCAAAAGAA+CGG | + | chr5_2:852688-852707 | None:intergenic | 25.0% |
| ! | AACAATATTGCGAAGAAATA+TGG | + | chr5_2:852829-852848 | None:intergenic | 25.0% |
| ! | TGGTAGAAACATCTTATTAA+TGG | + | chr5_2:852897-852916 | None:intergenic | 25.0% |
| !!! | ATGCTTTAAAATGAATTGGT+TGG | + | chr5_2:852983-853002 | None:intergenic | 25.0% |
| !!! | CAATATGGAAGTATCAATTT+TGG | - | chr5_2:853166-853185 | Msa0747920:intron | 25.0% |
| !!! | TGGTTTTTTTGTTGTGTTAA+TGG | - | chr5_2:853236-853255 | Msa0747920:intron | 25.0% |
| !!! | TGGTTTTTCAACATTACTTT+GGG | + | chr5_2:853513-853532 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTCAACATTACTT+TGG | + | chr5_2:853514-853533 | None:intergenic | 25.0% |
| ! | GTAATGTTGAAAAACCAATT+TGG | - | chr5_2:853516-853535 | Msa0747920:intron | 25.0% |
| !! | ATATTTTCAGTATTTTGTGG+TGG | + | chr5_2:853676-853695 | None:intergenic | 25.0% |
| !!! | GAAAAATGAAAAGGGTATTT+TGG | - | chr5_2:854113-854132 | Msa0747920:intron | 25.0% |
| ! | TTGATTTAGAAACTGATCAT+AGG | + | chr5_2:854210-854229 | None:intergenic | 25.0% |
| TATACTTCCTCTGTGTTAAA+TGG | - | chr5_2:852579-852598 | Msa0747920:three_prime_UTR | 30.0% | |
| AAAGCATGATTGAAATAAGC+TGG | - | chr5_2:852996-853015 | Msa0747920:CDS | 30.0% | |
| TTGAGAATAACTACAACAAG+AGG | + | chr5_2:853062-853081 | None:intergenic | 30.0% | |
| TAGTTATTCTCAAGTTCAAC+AGG | - | chr5_2:853069-853088 | Msa0747920:intron | 30.0% | |
| TGAAGAAACATGTAGCAATA+TGG | - | chr5_2:853151-853170 | Msa0747920:intron | 30.0% | |
| ! | TTTGGCTCACAATTAAATAC+TGG | - | chr5_2:853216-853235 | Msa0747920:intron | 30.0% |
| CAATATAAACTTGACTGACA+TGG | - | chr5_2:853468-853487 | Msa0747920:intron | 30.0% | |
| TGCCAATATTGTATATCATC+TGG | - | chr5_2:853641-853660 | Msa0747920:intron | 30.0% | |
| CACCAGATGATATACAATAT+TGG | + | chr5_2:853646-853665 | None:intergenic | 30.0% | |
| !! | CTACTTTTCCTTCATATTGT+TGG | - | chr5_2:853944-853963 | Msa0747920:CDS | 30.0% |
| ! | AAAACGACTTTACTAGCTTA+AGG | - | chr5_2:853981-854000 | Msa0747920:intron | 30.0% |
| ! | AAACGACTTTACTAGCTTAA+GGG | - | chr5_2:853982-854001 | Msa0747920:intron | 30.0% |
| !!! | GTTTGGTTTTGATTCTTCTT+TGG | - | chr5_2:854397-854416 | Msa0747920:intron | 30.0% |
| TTTGGGAAAAAGGAAAAGAA+AGG | - | chr5_2:854809-854828 | Msa0747920:intron | 30.0% | |
| TTGGGAAAAAGGAAAAGAAA+GGG | - | chr5_2:854810-854829 | Msa0747920:intron | 30.0% | |
| !! | CACTTGAGCTTTTAAAAGAA+GGG | + | chr5_2:854852-854871 | None:intergenic | 30.0% |
| !! | CTTCTTTTAAAAGCTCAAGT+GGG | - | chr5_2:854851-854870 | Msa0747920:intron | 30.0% |
| TATACTTCCTCTGTGTTAAA+TGG | - | chr5_2:852579-852598 | Msa0747920:three_prime_UTR | 30.0% | |
| AAAGCATGATTGAAATAAGC+TGG | - | chr5_2:852996-853015 | Msa0747920:CDS | 30.0% | |
| TTGAGAATAACTACAACAAG+AGG | + | chr5_2:853062-853081 | None:intergenic | 30.0% | |
| TAGTTATTCTCAAGTTCAAC+AGG | - | chr5_2:853069-853088 | Msa0747920:intron | 30.0% | |
| TGAAGAAACATGTAGCAATA+TGG | - | chr5_2:853151-853170 | Msa0747920:intron | 30.0% | |
| ! | TTTGGCTCACAATTAAATAC+TGG | - | chr5_2:853216-853235 | Msa0747920:intron | 30.0% |
| CAATATAAACTTGACTGACA+TGG | - | chr5_2:853468-853487 | Msa0747920:intron | 30.0% | |
| TGCCAATATTGTATATCATC+TGG | - | chr5_2:853641-853660 | Msa0747920:intron | 30.0% | |
| CACCAGATGATATACAATAT+TGG | + | chr5_2:853646-853665 | None:intergenic | 30.0% | |
| !! | CTACTTTTCCTTCATATTGT+TGG | - | chr5_2:853944-853963 | Msa0747920:CDS | 30.0% |
| ! | AAAACGACTTTACTAGCTTA+AGG | - | chr5_2:853981-854000 | Msa0747920:intron | 30.0% |
| ! | AAACGACTTTACTAGCTTAA+GGG | - | chr5_2:853982-854001 | Msa0747920:intron | 30.0% |
| !!! | GTTTGGTTTTGATTCTTCTT+TGG | - | chr5_2:854397-854416 | Msa0747920:intron | 30.0% |
| TTTGGGAAAAAGGAAAAGAA+AGG | - | chr5_2:854809-854828 | Msa0747920:intron | 30.0% | |
| TTGGGAAAAAGGAAAAGAAA+GGG | - | chr5_2:854810-854829 | Msa0747920:intron | 30.0% | |
| !! | CACTTGAGCTTTTAAAAGAA+GGG | + | chr5_2:854852-854871 | None:intergenic | 30.0% |
| !! | CTTCTTTTAAAAGCTCAAGT+GGG | - | chr5_2:854851-854870 | Msa0747920:intron | 30.0% |
| TATTGCACCATTTAACACAG+AGG | + | chr5_2:852589-852608 | None:intergenic | 35.0% | |
| GAGGATTAACTACGCTAAAA+GGG | + | chr5_2:853043-853062 | None:intergenic | 35.0% | |
| AGAGGATTAACTACGCTAAA+AGG | + | chr5_2:853044-853063 | None:intergenic | 35.0% | |
| AAGTTCAACAGGAAATCACT+TGG | - | chr5_2:853080-853099 | Msa0747920:intron | 35.0% | |
| CAGGAAATCACTTGGAATTT+CGG | - | chr5_2:853088-853107 | Msa0747920:intron | 35.0% | |
| GTTAATGGTGACATGAGTTA+AGG | - | chr5_2:853251-853270 | Msa0747920:intron | 35.0% | |
| !! | ACTGACATGGTTTAATTTGC+AGG | - | chr5_2:853481-853500 | Msa0747920:intron | 35.0% |
| !! | TGAAAAACCAATTTGGCTTG+AGG | - | chr5_2:853523-853542 | Msa0747920:intron | 35.0% |
| GTTCTACTCATCAAATTCGT+AGG | - | chr5_2:853576-853595 | Msa0747920:intron | 35.0% | |
| GTACTGTACAGATTGCAATA+TGG | - | chr5_2:853613-853632 | Msa0747920:intron | 35.0% | |
| !! | TTTTGATTGCTCAGAGATTC+AGG | - | chr5_2:853745-853764 | Msa0747920:CDS | 35.0% |
| GAGAATCTCCAACAATATGA+AGG | + | chr5_2:853955-853974 | None:intergenic | 35.0% | |
| ! | TTTTGTCCTTCACTAACCAT+GGG | + | chr5_2:854165-854184 | None:intergenic | 35.0% |
| ! | TTTTTGTCCTTCACTAACCA+TGG | + | chr5_2:854166-854185 | None:intergenic | 35.0% |
| !! | TTTGATTTGCTAGAGAACAG+GGG | + | chr5_2:854263-854282 | None:intergenic | 35.0% |
| !! | GTTTGATTTGCTAGAGAACA+GGG | + | chr5_2:854264-854283 | None:intergenic | 35.0% |
| !! | TGTTTGATTTGCTAGAGAAC+AGG | + | chr5_2:854265-854284 | None:intergenic | 35.0% |
| TTACAAAAGCAACAGGAAAG+TGG | - | chr5_2:854428-854447 | Msa0747920:intron | 35.0% | |
| TTGATGCTATCTCACTGAAT+TGG | + | chr5_2:854473-854492 | None:intergenic | 35.0% | |
| ! | CTTTTTGTTGCAAACTTCAC+AGG | + | chr5_2:854508-854527 | None:intergenic | 35.0% |
| ! | CTTTTCCTTTTTCCCAAAGA+AGG | + | chr5_2:854807-854826 | None:intergenic | 35.0% |
| TAAAAGAAGGGAGATCTATG+AGG | + | chr5_2:854840-854859 | None:intergenic | 35.0% | |
| !! | CCACTTGAGCTTTTAAAAGA+AGG | + | chr5_2:854853-854872 | None:intergenic | 35.0% |
| !! | CCTTCTTTTAAAAGCTCAAG+TGG | - | chr5_2:854850-854869 | Msa0747920:intron | 35.0% |
| TATTGCACCATTTAACACAG+AGG | + | chr5_2:852589-852608 | None:intergenic | 35.0% | |
| GAGGATTAACTACGCTAAAA+GGG | + | chr5_2:853043-853062 | None:intergenic | 35.0% | |
| AGAGGATTAACTACGCTAAA+AGG | + | chr5_2:853044-853063 | None:intergenic | 35.0% | |
| AAGTTCAACAGGAAATCACT+TGG | - | chr5_2:853080-853099 | Msa0747920:intron | 35.0% | |
| CAGGAAATCACTTGGAATTT+CGG | - | chr5_2:853088-853107 | Msa0747920:intron | 35.0% | |
| GTTAATGGTGACATGAGTTA+AGG | - | chr5_2:853251-853270 | Msa0747920:intron | 35.0% | |
| !! | ACTGACATGGTTTAATTTGC+AGG | - | chr5_2:853481-853500 | Msa0747920:intron | 35.0% |
| !! | TGAAAAACCAATTTGGCTTG+AGG | - | chr5_2:853523-853542 | Msa0747920:intron | 35.0% |
| GTTCTACTCATCAAATTCGT+AGG | - | chr5_2:853576-853595 | Msa0747920:intron | 35.0% | |
| GTACTGTACAGATTGCAATA+TGG | - | chr5_2:853613-853632 | Msa0747920:intron | 35.0% | |
| !! | TTTTGATTGCTCAGAGATTC+AGG | - | chr5_2:853745-853764 | Msa0747920:CDS | 35.0% |
| GAGAATCTCCAACAATATGA+AGG | + | chr5_2:853955-853974 | None:intergenic | 35.0% | |
| ! | TTTTGTCCTTCACTAACCAT+GGG | + | chr5_2:854165-854184 | None:intergenic | 35.0% |
| ! | TTTTTGTCCTTCACTAACCA+TGG | + | chr5_2:854166-854185 | None:intergenic | 35.0% |
| !! | TTTGATTTGCTAGAGAACAG+GGG | + | chr5_2:854263-854282 | None:intergenic | 35.0% |
| !! | GTTTGATTTGCTAGAGAACA+GGG | + | chr5_2:854264-854283 | None:intergenic | 35.0% |
| !! | TGTTTGATTTGCTAGAGAAC+AGG | + | chr5_2:854265-854284 | None:intergenic | 35.0% |
| TTACAAAAGCAACAGGAAAG+TGG | - | chr5_2:854428-854447 | Msa0747920:intron | 35.0% | |
| TTGATGCTATCTCACTGAAT+TGG | + | chr5_2:854473-854492 | None:intergenic | 35.0% | |
| ! | CTTTTTGTTGCAAACTTCAC+AGG | + | chr5_2:854508-854527 | None:intergenic | 35.0% |
| ! | CTTTTCCTTTTTCCCAAAGA+AGG | + | chr5_2:854807-854826 | None:intergenic | 35.0% |
| TAAAAGAAGGGAGATCTATG+AGG | + | chr5_2:854840-854859 | None:intergenic | 35.0% | |
| !! | CCACTTGAGCTTTTAAAAGA+AGG | + | chr5_2:854853-854872 | None:intergenic | 35.0% |
| !! | CCTTCTTTTAAAAGCTCAAG+TGG | - | chr5_2:854850-854869 | Msa0747920:intron | 35.0% |
| AAAGAGTCACATAGAGACCA+AGG | + | chr5_2:852625-852644 | None:intergenic | 40.0% | |
| AATGGTGACATGAGTTAAGG+CGG | - | chr5_2:853254-853273 | Msa0747920:intron | 40.0% | |
| !! | GACATGGTTTAATTTGCAGG+AGG | - | chr5_2:853484-853503 | Msa0747920:intron | 40.0% |
| AAAAGAGCCTCAAGCCAAAT+TGG | + | chr5_2:853533-853552 | None:intergenic | 40.0% | |
| CGTAGACTTACAAAAGCAAC+AGG | - | chr5_2:854421-854440 | Msa0747920:intron | 40.0% | |
| GCACAGTAGCGATATAAATC+AGG | + | chr5_2:854540-854559 | None:intergenic | 40.0% | |
| AGTCATCACCTTGCAAGAAA+GGG | + | chr5_2:854562-854581 | None:intergenic | 40.0% | |
| TAGTCATCACCTTGCAAGAA+AGG | + | chr5_2:854563-854582 | None:intergenic | 40.0% | |
| CGATCAAAGAGGACAATAAG+TGG | + | chr5_2:854603-854622 | None:intergenic | 40.0% | |
| TATCGAATGTGCGATCAAAG+AGG | + | chr5_2:854614-854633 | None:intergenic | 40.0% | |
| TTCAAAAAAGTCCGAGTCTG+AGG | - | chr5_2:854689-854708 | Msa0747920:intron | 40.0% | |
| AAAGAGTCACATAGAGACCA+AGG | + | chr5_2:852625-852644 | None:intergenic | 40.0% | |
| AATGGTGACATGAGTTAAGG+CGG | - | chr5_2:853254-853273 | Msa0747920:intron | 40.0% | |
| !! | GACATGGTTTAATTTGCAGG+AGG | - | chr5_2:853484-853503 | Msa0747920:intron | 40.0% |
| AAAAGAGCCTCAAGCCAAAT+TGG | + | chr5_2:853533-853552 | None:intergenic | 40.0% | |
| CGTAGACTTACAAAAGCAAC+AGG | - | chr5_2:854421-854440 | Msa0747920:intron | 40.0% | |
| GCACAGTAGCGATATAAATC+AGG | + | chr5_2:854540-854559 | None:intergenic | 40.0% | |
| AGTCATCACCTTGCAAGAAA+GGG | + | chr5_2:854562-854581 | None:intergenic | 40.0% | |
| TAGTCATCACCTTGCAAGAA+AGG | + | chr5_2:854563-854582 | None:intergenic | 40.0% | |
| CGATCAAAGAGGACAATAAG+TGG | + | chr5_2:854603-854622 | None:intergenic | 40.0% | |
| TATCGAATGTGCGATCAAAG+AGG | + | chr5_2:854614-854633 | None:intergenic | 40.0% | |
| TTCAAAAAAGTCCGAGTCTG+AGG | - | chr5_2:854689-854708 | Msa0747920:intron | 40.0% | |
| ! | TGTTGTTGCTCTGAGTGCTA+TGG | - | chr5_2:853715-853734 | Msa0747920:intron | 45.0% |
| AGAAGAAGACAGAGCAGTAC+TGG | - | chr5_2:854057-854076 | Msa0747920:intron | 45.0% | |
| ! | TTTTGGATAGTCAGTACCCC+TGG | - | chr5_2:854130-854149 | Msa0747920:intron | 45.0% |
| AGTTGTCCCATGGTTAGTGA+AGG | - | chr5_2:854156-854175 | Msa0747920:intron | 45.0% | |
| !! | TCAAGTGGTGTTGTGCTAAC+TGG | + | chr5_2:854717-854736 | None:intergenic | 45.0% |
| AACACCACTTGAGTCCTCTT+CGG | - | chr5_2:854725-854744 | Msa0747920:intron | 45.0% | |
| GGAACTTCTGGACCTTCTTT+GGG | - | chr5_2:854792-854811 | Msa0747920:intron | 45.0% | |
| ! | CTGGACCTTCTTTGGGAAAA+AGG | - | chr5_2:854799-854818 | Msa0747920:intron | 45.0% |
| ! | TGTTGTTGCTCTGAGTGCTA+TGG | - | chr5_2:853715-853734 | Msa0747920:intron | 45.0% |
| AGAAGAAGACAGAGCAGTAC+TGG | - | chr5_2:854057-854076 | Msa0747920:intron | 45.0% | |
| ! | TTTTGGATAGTCAGTACCCC+TGG | - | chr5_2:854130-854149 | Msa0747920:intron | 45.0% |
| AGTTGTCCCATGGTTAGTGA+AGG | - | chr5_2:854156-854175 | Msa0747920:intron | 45.0% | |
| !! | TCAAGTGGTGTTGTGCTAAC+TGG | + | chr5_2:854717-854736 | None:intergenic | 45.0% |
| AACACCACTTGAGTCCTCTT+CGG | - | chr5_2:854725-854744 | Msa0747920:intron | 45.0% | |
| GGAACTTCTGGACCTTCTTT+GGG | - | chr5_2:854792-854811 | Msa0747920:intron | 45.0% | |
| ! | CTGGACCTTCTTTGGGAAAA+AGG | - | chr5_2:854799-854818 | Msa0747920:intron | 45.0% |
| ACCATGGGACAACTTGTCCA+GGG | + | chr5_2:854150-854169 | None:intergenic | 50.0% | |
| AACCATGGGACAACTTGTCC+AGG | + | chr5_2:854151-854170 | None:intergenic | 50.0% | |
| GCTATCTCACTGAATTGGCG+AGG | + | chr5_2:854468-854487 | None:intergenic | 50.0% | |
| CTACTGTGCCCTTTCTTGCA+AGG | - | chr5_2:854551-854570 | Msa0747920:intron | 50.0% | |
| GCTAACTGGATCCTCAGACT+CGG | + | chr5_2:854703-854722 | None:intergenic | 50.0% | |
| ACACCACTTGAGTCCTCTTC+GGG | - | chr5_2:854726-854745 | Msa0747920:intron | 50.0% | |
| TGTGTTTCCTGATGCTGAGG+AGG | + | chr5_2:854768-854787 | None:intergenic | 50.0% | |
| TCCTCAGCATCAGGAAACAC+AGG | - | chr5_2:854767-854786 | Msa0747920:intron | 50.0% | |
| TCCTGTGTTTCCTGATGCTG+AGG | + | chr5_2:854771-854790 | None:intergenic | 50.0% | |
| TCAGCATCAGGAAACACAGG+AGG | - | chr5_2:854770-854789 | Msa0747920:intron | 50.0% | |
| CAGCATCAGGAAACACAGGA+GGG | - | chr5_2:854771-854790 | Msa0747920:intron | 50.0% | |
| GAAACACAGGAGGGAACTTC+TGG | - | chr5_2:854780-854799 | Msa0747920:intron | 50.0% | |
| GGGAACTTCTGGACCTTCTT+TGG | - | chr5_2:854791-854810 | Msa0747920:intron | 50.0% | |
| ACCATGGGACAACTTGTCCA+GGG | + | chr5_2:854150-854169 | None:intergenic | 50.0% | |
| AACCATGGGACAACTTGTCC+AGG | + | chr5_2:854151-854170 | None:intergenic | 50.0% | |
| GCTATCTCACTGAATTGGCG+AGG | + | chr5_2:854468-854487 | None:intergenic | 50.0% | |
| CTACTGTGCCCTTTCTTGCA+AGG | - | chr5_2:854551-854570 | Msa0747920:intron | 50.0% | |
| GCTAACTGGATCCTCAGACT+CGG | + | chr5_2:854703-854722 | None:intergenic | 50.0% | |
| ACACCACTTGAGTCCTCTTC+GGG | - | chr5_2:854726-854745 | Msa0747920:intron | 50.0% | |
| TGTGTTTCCTGATGCTGAGG+AGG | + | chr5_2:854768-854787 | None:intergenic | 50.0% | |
| TCCTCAGCATCAGGAAACAC+AGG | - | chr5_2:854767-854786 | Msa0747920:intron | 50.0% | |
| TCCTGTGTTTCCTGATGCTG+AGG | + | chr5_2:854771-854790 | None:intergenic | 50.0% | |
| TCAGCATCAGGAAACACAGG+AGG | - | chr5_2:854770-854789 | Msa0747920:intron | 50.0% | |
| CAGCATCAGGAAACACAGGA+GGG | - | chr5_2:854771-854790 | Msa0747920:intron | 50.0% | |
| GAAACACAGGAGGGAACTTC+TGG | - | chr5_2:854780-854799 | Msa0747920:intron | 50.0% | |
| GGGAACTTCTGGACCTTCTT+TGG | - | chr5_2:854791-854810 | Msa0747920:intron | 50.0% | |
| CCATGGGACAACTTGTCCAG+GGG | + | chr5_2:854149-854168 | None:intergenic | 55.0% | |
| TCTTCGGGACCTTCCATCCA+GGG | - | chr5_2:854741-854760 | Msa0747920:intron | 55.0% | |
| CCATGGGACAACTTGTCCAG+GGG | + | chr5_2:854149-854168 | None:intergenic | 55.0% | |
| TCTTCGGGACCTTCCATCCA+GGG | - | chr5_2:854741-854760 | Msa0747920:intron | 55.0% | |
| CCCCTGGACAAGTTGTCCCA+TGG | - | chr5_2:854146-854165 | Msa0747920:intron | 60.0% | |
| GGTCCCGAAGAGGACTCAAG+TGG | + | chr5_2:854732-854751 | None:intergenic | 60.0% | |
| CTGGATGGAAGGTCCCGAAG+AGG | + | chr5_2:854742-854761 | None:intergenic | 60.0% | |
| CTCTTCGGGACCTTCCATCC+AGG | - | chr5_2:854740-854759 | Msa0747920:intron | 60.0% | |
| TGAGGAGGACCCTGGATGGA+AGG | + | chr5_2:854753-854772 | None:intergenic | 60.0% | |
| ATGCTGAGGAGGACCCTGGA+TGG | + | chr5_2:854757-854776 | None:intergenic | 60.0% | |
| CCCCTGGACAAGTTGTCCCA+TGG | - | chr5_2:854146-854165 | Msa0747920:intron | 60.0% | |
| GGTCCCGAAGAGGACTCAAG+TGG | + | chr5_2:854732-854751 | None:intergenic | 60.0% | |
| CTGGATGGAAGGTCCCGAAG+AGG | + | chr5_2:854742-854761 | None:intergenic | 60.0% | |
| CTCTTCGGGACCTTCCATCC+AGG | - | chr5_2:854740-854759 | Msa0747920:intron | 60.0% | |
| TGAGGAGGACCCTGGATGGA+AGG | + | chr5_2:854753-854772 | None:intergenic | 60.0% | |
| ATGCTGAGGAGGACCCTGGA+TGG | + | chr5_2:854757-854776 | None:intergenic | 60.0% | |
| CCTGATGCTGAGGAGGACCC+TGG | + | chr5_2:854761-854780 | None:intergenic | 65.0% | |
| CCAGGGTCCTCCTCAGCATC+AGG | - | chr5_2:854758-854777 | Msa0747920:intron | 65.0% | |
| CCTGATGCTGAGGAGGACCC+TGG | + | chr5_2:854761-854780 | None:intergenic | 65.0% | |
| CCAGGGTCCTCCTCAGCATC+AGG | - | chr5_2:854758-854777 | Msa0747920:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 852545 | 854938 | 852545 | ID=Msa0747920;Name=Msa0747920 |
| chr5_2 | mRNA | 852545 | 854938 | 852545 | ID=Msa0747920-mRNA-1;Parent=Msa0747920;Name=Msa0747920-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.66|0.75|0.75|1|1|4|78|200 |
| chr5_2 | exon | 852545 | 852805 | 852545 | ID=Msa0747920-mRNA-1:exon:212;Parent=Msa0747920-mRNA-1 |
| chr5_2 | exon | 852911 | 853057 | 852911 | ID=Msa0747920-mRNA-1:exon:211;Parent=Msa0747920-mRNA-1 |
| chr5_2 | exon | 853717 | 853980 | 853717 | ID=Msa0747920-mRNA-1:exon:210;Parent=Msa0747920-mRNA-1 |
| chr5_2 | exon | 854930 | 854938 | 854930 | ID=Msa0747920-mRNA-1:exon:209;Parent=Msa0747920-mRNA-1 |
| chr5_2 | CDS | 854930 | 854938 | 854930 | ID=Msa0747920-mRNA-1:cds;Parent=Msa0747920-mRNA-1 |
| chr5_2 | CDS | 853717 | 853980 | 853717 | ID=Msa0747920-mRNA-1:cds;Parent=Msa0747920-mRNA-1 |
| chr5_2 | CDS | 852911 | 853057 | 852911 | ID=Msa0747920-mRNA-1:cds;Parent=Msa0747920-mRNA-1 |
| chr5_2 | CDS | 852623 | 852805 | 852623 | ID=Msa0747920-mRNA-1:cds;Parent=Msa0747920-mRNA-1 |
| chr5_2 | three_prime_UTR | 852545 | 852622 | 852545 | ID=Msa0747920-mRNA-1:three_prime_utr;Parent=Msa0747920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
