Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451100 | sp|Q1G3Q4|RITF1_ARATH | 34.356 | 163 | 102 | 3 | 9 | 170 | 2 | 160 | 2.01e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451100 | A0A072TV38 | 99.351 | 154 | 1 | 0 | 47 | 200 | 1 | 154 | 5.26e-109 | 318 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1451100 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0747920 | Msa1451100 | 0.984217 | 6.358195e-160 | -8.615850e-47 |
| Msa1085350 | Msa1451100 | 0.808369 | 3.204133e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451100 | MtrunA17_Chr8g0386511 | 99.351 | 154 | 1 | 0 | 47 | 200 | 1 | 154 | 1.01e-112 | 318 |
| Msa1451100 | MtrunA17_Chr5g0434331 | 38.500 | 200 | 100 | 3 | 1 | 200 | 31 | 207 | 1.65e-43 | 144 |
| Msa1451100 | MtrunA17_Chr7g0265291 | 34.483 | 203 | 116 | 6 | 10 | 199 | 4 | 202 | 5.09e-29 | 107 |
| Msa1451100 | MtrunA17_Chr1g0179781 | 32.323 | 198 | 120 | 5 | 13 | 199 | 7 | 201 | 3.39e-27 | 102 |
| Msa1451100 | MtrunA17_Chr2g0297251 | 36.538 | 156 | 94 | 3 | 12 | 166 | 36 | 187 | 7.52e-27 | 102 |
| Msa1451100 | MtrunA17_Chr4g0040071 | 30.303 | 198 | 123 | 6 | 13 | 199 | 15 | 208 | 3.34e-25 | 97.4 |
| Msa1451100 | MtrunA17_Chr4g0065041 | 36.111 | 144 | 87 | 3 | 11 | 153 | 6 | 145 | 3.74e-25 | 98.2 |
| Msa1451100 | MtrunA17_Chr7g0230511 | 31.148 | 183 | 108 | 6 | 13 | 182 | 9 | 186 | 3.88e-25 | 98.2 |
| Msa1451100 | MtrunA17_Chr5g0395181 | 30.412 | 194 | 127 | 5 | 10 | 199 | 18 | 207 | 3.98e-24 | 94.7 |
| Msa1451100 | MtrunA17_Chr5g0411151 | 31.343 | 201 | 119 | 6 | 13 | 199 | 35 | 230 | 1.02e-23 | 94.4 |
| Msa1451100 | MtrunA17_Chr8g0366581 | 30.000 | 200 | 123 | 7 | 13 | 199 | 33 | 228 | 3.48e-22 | 90.1 |
| Msa1451100 | MtrunA17_Chr8g0392151 | 32.432 | 148 | 75 | 5 | 15 | 141 | 15 | 158 | 9.54e-19 | 81.3 |
| Msa1451100 | MtrunA17_Chr2g0320561 | 30.769 | 169 | 102 | 8 | 15 | 171 | 6 | 171 | 9.54e-15 | 70.5 |
| Msa1451100 | MtrunA17_Chr4g0020811 | 29.861 | 144 | 79 | 6 | 15 | 143 | 8 | 144 | 5.27e-13 | 63.9 |
| Msa1451100 | MtrunA17_Chr1g0161601 | 41.975 | 81 | 44 | 2 | 15 | 95 | 50 | 127 | 1.05e-12 | 62.8 |
| Msa1451100 | MtrunA17_Chr2g0308401 | 29.861 | 144 | 79 | 6 | 15 | 143 | 6 | 142 | 1.44e-12 | 62.8 |
| Msa1451100 | MtrunA17_Chr2g0320551 | 32.867 | 143 | 82 | 6 | 15 | 146 | 6 | 145 | 9.37e-12 | 60.8 |
| Msa1451100 | MtrunA17_Chr4g0052451 | 38.095 | 84 | 44 | 2 | 64 | 141 | 10 | 91 | 2.62e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451100 | AT1G31040.1 | 32.900 | 231 | 106 | 8 | 12 | 199 | 18 | 242 | 6.76e-29 | 108 |
| Msa1451100 | AT2G27930.1 | 36.946 | 203 | 99 | 7 | 10 | 199 | 1 | 187 | 1.89e-28 | 105 |
| Msa1451100 | AT2G27930.4 | 36.946 | 203 | 99 | 7 | 10 | 199 | 1 | 187 | 1.89e-28 | 105 |
| Msa1451100 | AT2G01818.1 | 32.589 | 224 | 123 | 9 | 3 | 200 | 1 | 222 | 7.99e-28 | 105 |
| Msa1451100 | AT5G46710.3 | 33.019 | 212 | 103 | 6 | 13 | 199 | 12 | 209 | 2.01e-27 | 103 |
| Msa1451100 | AT5G46710.1 | 33.019 | 212 | 103 | 6 | 13 | 199 | 28 | 225 | 3.01e-27 | 103 |
| Msa1451100 | AT2G12646.1 | 34.356 | 163 | 102 | 3 | 9 | 170 | 2 | 160 | 2.04e-26 | 102 |
| Msa1451100 | AT2G12646.2 | 34.356 | 163 | 102 | 3 | 9 | 170 | 2 | 160 | 2.04e-26 | 102 |
| Msa1451100 | AT1G32700.1 | 32.195 | 205 | 123 | 6 | 7 | 199 | 6 | 206 | 5.61e-26 | 99.8 |
| Msa1451100 | AT2G12646.3 | 35.000 | 160 | 99 | 3 | 12 | 170 | 2 | 157 | 1.54e-25 | 99.8 |
| Msa1451100 | AT1G76590.1 | 32.787 | 183 | 109 | 6 | 1 | 181 | 6 | 176 | 2.08e-25 | 99.4 |
| Msa1451100 | AT1G43000.2 | 32.407 | 216 | 117 | 8 | 9 | 199 | 12 | 223 | 4.79e-25 | 97.8 |
| Msa1451100 | AT1G43000.1 | 32.407 | 216 | 117 | 8 | 9 | 199 | 5 | 216 | 4.81e-25 | 97.4 |
| Msa1451100 | AT4G17900.2 | 32.143 | 196 | 121 | 5 | 13 | 199 | 20 | 212 | 7.41e-25 | 97.1 |
| Msa1451100 | AT4G17900.1 | 32.143 | 196 | 121 | 5 | 13 | 199 | 34 | 226 | 8.68e-25 | 97.1 |
| Msa1451100 | AT3G60670.1 | 36.296 | 135 | 81 | 3 | 11 | 144 | 5 | 135 | 3.93e-24 | 95.9 |
| Msa1451100 | AT1G21000.1 | 28.511 | 235 | 116 | 9 | 13 | 199 | 16 | 246 | 2.45e-22 | 91.3 |
| Msa1451100 | AT1G21000.2 | 28.511 | 235 | 116 | 9 | 13 | 199 | 13 | 243 | 2.98e-22 | 90.9 |
| Msa1451100 | AT2G27930.3 | 38.462 | 143 | 74 | 5 | 10 | 141 | 1 | 140 | 1.55e-20 | 84.7 |
| Msa1451100 | AT2G27930.2 | 38.462 | 143 | 74 | 5 | 10 | 141 | 1 | 140 | 1.55e-20 | 84.7 |
| Msa1451100 | AT5G46710.2 | 34.507 | 142 | 88 | 4 | 2 | 141 | 17 | 155 | 2.88e-20 | 84.0 |
| Msa1451100 | AT1G32700.2 | 31.765 | 170 | 101 | 5 | 41 | 199 | 2 | 167 | 5.93e-19 | 80.5 |
| Msa1451100 | AT2G27930.5 | 33.793 | 145 | 70 | 4 | 66 | 199 | 61 | 190 | 1.67e-12 | 63.9 |
| Msa1451100 | AT2G27930.6 | 33.793 | 145 | 70 | 4 | 66 | 199 | 61 | 190 | 1.67e-12 | 63.9 |
| Msa1451100 | AT2G01818.2 | 33.121 | 157 | 80 | 7 | 67 | 200 | 4 | 158 | 9.21e-12 | 61.2 |
Find 37 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGACCTTCTTTGGGAAAA+AGG | 0.129448 | tig0033204:-4980 | Msa1451100:CDS |
| GGGAACTTCTGGACCTTCTT+TGG | 0.210937 | tig0033204:-4988 | Msa1451100:CDS |
| GAAACACAGGAGGGAACTTC+TGG | 0.286766 | tig0033204:-4999 | Msa1451100:CDS |
| AAAAGAGCCTCAAGCCAAAT+TGG | 0.306260 | tig0033204:+6249 | None:intergenic |
| GGAACTTCTGGACCTTCTTT+GGG | 0.337965 | tig0033204:-4987 | Msa1451100:CDS |
| TCAAGTGGTGTTGTGCTAAC+TGG | 0.344627 | tig0033204:+5065 | None:intergenic |
| CACCAGATGATATACAATAT+TGG | 0.377985 | tig0033204:+6136 | None:intergenic |
| CTCTTCGGGACCTTCCATCC+AGG | 0.401860 | tig0033204:-5039 | Msa1451100:CDS |
| TTGATGCTATCTCACTGAAT+TGG | 0.402058 | tig0033204:+5309 | None:intergenic |
| ACACCACTTGAGTCCTCTTC+GGG | 0.413177 | tig0033204:-5053 | Msa1451100:CDS |
| AACACCACTTGAGTCCTCTT+CGG | 0.418793 | tig0033204:-5054 | Msa1451100:CDS |
| CCAGGGTCCTCCTCAGCATC+AGG | 0.432791 | tig0033204:-5021 | Msa1451100:CDS |
| TAGTCATCACCTTGCAAGAA+AGG | 0.434907 | tig0033204:+5219 | None:intergenic |
| GCACAGTAGCGATATAAATC+AGG | 0.468363 | tig0033204:+5242 | None:intergenic |
| GTACTGTACAGATTGCAATA+TGG | 0.468846 | tig0033204:-6166 | Msa1451100:CDS |
| CGTAGACTTACAAAAGCAAC+AGG | 0.478767 | tig0033204:-5358 | Msa1451100:intron |
| CCTGATGCTGAGGAGGACCC+TGG | 0.491773 | tig0033204:+5021 | None:intergenic |
| CTACTGTGCCCTTTCTTGCA+AGG | 0.513621 | tig0033204:-5228 | Msa1451100:intron |
| TCTTCGGGACCTTCCATCCA+GGG | 0.514865 | tig0033204:-5038 | Msa1451100:CDS |
| TCCTGTGTTTCCTGATGCTG+AGG | 0.533529 | tig0033204:+5011 | None:intergenic |
| TGCCAATATTGTATATCATC+TGG | 0.537908 | tig0033204:-6138 | Msa1451100:CDS |
| TAAAAGAAGGGAGATCTATG+AGG | 0.542712 | tig0033204:+4942 | None:intergenic |
| AGTCATCACCTTGCAAGAAA+GGG | 0.543071 | tig0033204:+5220 | None:intergenic |
| GTTCTACTCATCAAATTCGT+AGG | 0.546464 | tig0033204:-6203 | Msa1451100:CDS |
| TGTGTTTCCTGATGCTGAGG+AGG | 0.548455 | tig0033204:+5014 | None:intergenic |
| ATGCTGAGGAGGACCCTGGA+TGG | 0.559712 | tig0033204:+5025 | None:intergenic |
| TGTTGTTGCTCTGAGTGCTA+TGG | 0.578177 | tig0033204:-6064 | Msa1451100:CDS |
| TTACAAAAGCAACAGGAAAG+TGG | 0.586060 | tig0033204:-5351 | Msa1451100:CDS |
| TCCTCAGCATCAGGAAACAC+AGG | 0.589871 | tig0033204:-5012 | Msa1451100:CDS |
| TGAGGAGGACCCTGGATGGA+AGG | 0.592506 | tig0033204:+5029 | None:intergenic |
| AATATATAGACATATTTACA+AGG | 0.614023 | tig0033204:-6088 | Msa1451100:CDS |
| GCTATCTCACTGAATTGGCG+AGG | 0.635923 | tig0033204:+5314 | None:intergenic |
| TCAGCATCAGGAAACACAGG+AGG | 0.659675 | tig0033204:-5009 | Msa1451100:CDS |
| GCTAACTGGATCCTCAGACT+CGG | 0.666411 | tig0033204:+5079 | None:intergenic |
| GGTCCCGAAGAGGACTCAAG+TGG | 0.687578 | tig0033204:+5050 | None:intergenic |
| CAGCATCAGGAAACACAGGA+GGG | 0.689712 | tig0033204:-5008 | Msa1451100:CDS |
| CTGGATGGAAGGTCCCGAAG+AGG | 0.694672 | tig0033204:+5040 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATATTTATTTGTGTT+TGG | - | tig0033204:5516-5535 | Msa1451100:intron | 10.0% |
| !! | ATATATTGTATGTTTAATAT+GGG | + | tig0033204:5600-5619 | None:intergenic | 10.0% |
| !! | AATATATTGTATGTTTAATA+TGG | + | tig0033204:5601-5620 | None:intergenic | 10.0% |
| !! | AAATTATATTTATTTGTGTT+TGG | - | tig0033204:5516-5535 | Msa1451100:intron | 10.0% |
| !! | ATATATTGTATGTTTAATAT+GGG | + | tig0033204:5600-5619 | None:intergenic | 10.0% |
| !! | AATATATTGTATGTTTAATA+TGG | + | tig0033204:5601-5620 | None:intergenic | 10.0% |
| !!! | TATCTTTACATATTTTTACA+TGG | - | tig0033204:5179-5198 | Msa1451100:intron | 15.0% |
| !!! | TATATATTTTCAGTATTTTG+TGG | + | tig0033204:5997-6016 | None:intergenic | 15.0% |
| !! | AATATATAGACATATTTACA+AGG | - | tig0033204:6009-6028 | Msa1451100:intron | 15.0% |
| !!! | TATCTTTACATATTTTTACA+TGG | - | tig0033204:5179-5198 | Msa1451100:intron | 15.0% |
| !!! | TATATATTTTCAGTATTTTG+TGG | + | tig0033204:5997-6016 | None:intergenic | 15.0% |
| !! | AATATATAGACATATTTACA+AGG | - | tig0033204:6009-6028 | Msa1451100:intron | 15.0% |
| !! | AATATTCAATTAAAACTCCT+TGG | - | tig0033204:4923-4942 | Msa1451100:exon | 20.0% |
| !!! | ATAGATAAGCTCTTAAATTT+TGG | - | tig0033204:5016-5035 | Msa1451100:CDS | 20.0% |
| !!! | TGAATATGAAGTACTTTATT+AGG | - | tig0033204:5081-5100 | Msa1451100:CDS | 20.0% |
| !!! | AAGATTTTCAAAGATAAACA+TGG | + | tig0033204:5235-5254 | None:intergenic | 20.0% |
| !!! | AATCATGCTTTAAAATGAAT+TGG | + | tig0033204:5305-5324 | None:intergenic | 20.0% |
| !! | ATATGTTAATTAGCATACAT+TGG | + | tig0033204:5663-5682 | None:intergenic | 20.0% |
| !!! | CTTTTGAGAGAAAATTATTT+TGG | - | tig0033204:5866-5885 | Msa1451100:intron | 20.0% |
| !! | TTGTATGTTGAAAAATGAAA+AGG | - | tig0033204:6422-6441 | Msa1451100:intron | 20.0% |
| !! | TGTATGTTGAAAAATGAAAA+GGG | - | tig0033204:6423-6442 | Msa1451100:intron | 20.0% |
| !!! | AAAAATTCATGTTTTTGTCT+AGG | - | tig0033204:6499-6518 | Msa1451100:intron | 20.0% |
| !! | GAGTTATTTGTAATTAAGTA+GGG | + | tig0033204:6608-6627 | None:intergenic | 20.0% |
| !! | AGAGTTATTTGTAATTAAGT+AGG | + | tig0033204:6609-6628 | None:intergenic | 20.0% |
| !! | ACATAGTAAAAAAATTGGTT+CGG | + | tig0033204:6695-6714 | None:intergenic | 20.0% |
| !! | CAAACACATAGTAAAAAAAT+TGG | + | tig0033204:6700-6719 | None:intergenic | 20.0% |
| !!! | CAATTTTTTTACTATGTGTT+TGG | - | tig0033204:6698-6717 | Msa1451100:intron | 20.0% |
| !!! | TTTTTATCTGAATTTTCATC+AGG | - | tig0033204:6974-6993 | Msa1451100:intron | 20.0% |
| !! | AATATTCAATTAAAACTCCT+TGG | - | tig0033204:4923-4942 | Msa1451100:exon | 20.0% |
| !!! | ATAGATAAGCTCTTAAATTT+TGG | - | tig0033204:5016-5035 | Msa1451100:CDS | 20.0% |
| !!! | TGAATATGAAGTACTTTATT+AGG | - | tig0033204:5081-5100 | Msa1451100:CDS | 20.0% |
| !!! | AAGATTTTCAAAGATAAACA+TGG | + | tig0033204:5235-5254 | None:intergenic | 20.0% |
| !!! | AATCATGCTTTAAAATGAAT+TGG | + | tig0033204:5305-5324 | None:intergenic | 20.0% |
| !! | ATATGTTAATTAGCATACAT+TGG | + | tig0033204:5663-5682 | None:intergenic | 20.0% |
| !!! | CTTTTGAGAGAAAATTATTT+TGG | - | tig0033204:5866-5885 | Msa1451100:intron | 20.0% |
| !! | TTGTATGTTGAAAAATGAAA+AGG | - | tig0033204:6422-6441 | Msa1451100:intron | 20.0% |
| !! | TGTATGTTGAAAAATGAAAA+GGG | - | tig0033204:6423-6442 | Msa1451100:intron | 20.0% |
| !!! | AAAAATTCATGTTTTTGTCT+AGG | - | tig0033204:6499-6518 | Msa1451100:intron | 20.0% |
| !! | GAGTTATTTGTAATTAAGTA+GGG | + | tig0033204:6608-6627 | None:intergenic | 20.0% |
| !! | AGAGTTATTTGTAATTAAGT+AGG | + | tig0033204:6609-6628 | None:intergenic | 20.0% |
| !! | ACATAGTAAAAAAATTGGTT+CGG | + | tig0033204:6695-6714 | None:intergenic | 20.0% |
| !! | CAAACACATAGTAAAAAAAT+TGG | + | tig0033204:6700-6719 | None:intergenic | 20.0% |
| !!! | CAATTTTTTTACTATGTGTT+TGG | - | tig0033204:6698-6717 | Msa1451100:intron | 20.0% |
| !!! | TTTTTATCTGAATTTTCATC+AGG | - | tig0033204:6974-6993 | Msa1451100:intron | 20.0% |
| ! | GCTTATCTATATCAAAAGAA+CGG | + | tig0033204:5006-5025 | None:intergenic | 25.0% |
| ! | AACAATATTGCGAAGAAATA+TGG | + | tig0033204:5147-5166 | None:intergenic | 25.0% |
| ! | TGGTAGAAACATCTTATTAA+TGG | + | tig0033204:5215-5234 | None:intergenic | 25.0% |
| !!! | ATGCTTTAAAATGAATTGGT+TGG | + | tig0033204:5301-5320 | None:intergenic | 25.0% |
| !!! | CAATATGGAAGTATCAATTT+TGG | - | tig0033204:5484-5503 | Msa1451100:intron | 25.0% |
| !!! | TGGTTTTTTTGTTGTGTTAA+TGG | - | tig0033204:5554-5573 | Msa1451100:intron | 25.0% |
| !!! | TGGTTTTTCAACATTACTTT+GGG | + | tig0033204:5831-5850 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTCAACATTACTT+TGG | + | tig0033204:5832-5851 | None:intergenic | 25.0% |
| ! | GTAATGTTGAAAAACCAATT+TGG | - | tig0033204:5834-5853 | Msa1451100:intron | 25.0% |
| !! | ATATTTTCAGTATTTTGTGG+TGG | + | tig0033204:5994-6013 | None:intergenic | 25.0% |
| !!! | GAAAAATGAAAAGGGTATTT+TGG | - | tig0033204:6431-6450 | Msa1451100:intron | 25.0% |
| ! | TTGATTTAGAAACTGATCAT+AGG | + | tig0033204:6528-6547 | None:intergenic | 25.0% |
| ! | GCTTATCTATATCAAAAGAA+CGG | + | tig0033204:5006-5025 | None:intergenic | 25.0% |
| ! | AACAATATTGCGAAGAAATA+TGG | + | tig0033204:5147-5166 | None:intergenic | 25.0% |
| ! | TGGTAGAAACATCTTATTAA+TGG | + | tig0033204:5215-5234 | None:intergenic | 25.0% |
| !!! | ATGCTTTAAAATGAATTGGT+TGG | + | tig0033204:5301-5320 | None:intergenic | 25.0% |
| !!! | CAATATGGAAGTATCAATTT+TGG | - | tig0033204:5484-5503 | Msa1451100:intron | 25.0% |
| !!! | TGGTTTTTTTGTTGTGTTAA+TGG | - | tig0033204:5554-5573 | Msa1451100:intron | 25.0% |
| !!! | TGGTTTTTCAACATTACTTT+GGG | + | tig0033204:5831-5850 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTCAACATTACTT+TGG | + | tig0033204:5832-5851 | None:intergenic | 25.0% |
| ! | GTAATGTTGAAAAACCAATT+TGG | - | tig0033204:5834-5853 | Msa1451100:intron | 25.0% |
| !! | ATATTTTCAGTATTTTGTGG+TGG | + | tig0033204:5994-6013 | None:intergenic | 25.0% |
| !!! | GAAAAATGAAAAGGGTATTT+TGG | - | tig0033204:6431-6450 | Msa1451100:intron | 25.0% |
| ! | TTGATTTAGAAACTGATCAT+AGG | + | tig0033204:6528-6547 | None:intergenic | 25.0% |
| TATACTTCCTCTGTGTTAAA+TGG | - | tig0033204:4897-4916 | Msa1451100:three_prime_UTR | 30.0% | |
| AAAGCATGATTGAAATAAGC+TGG | - | tig0033204:5314-5333 | Msa1451100:CDS | 30.0% | |
| TTGAGAATAACTACAACAAG+AGG | + | tig0033204:5380-5399 | None:intergenic | 30.0% | |
| TAGTTATTCTCAAGTTCAAC+AGG | - | tig0033204:5387-5406 | Msa1451100:intron | 30.0% | |
| TGAAGAAACATGTAGCAATA+TGG | - | tig0033204:5469-5488 | Msa1451100:intron | 30.0% | |
| ! | TTTGGCTCACAATTAAATAC+TGG | - | tig0033204:5534-5553 | Msa1451100:intron | 30.0% |
| CAATATAAACTTGACTGACA+TGG | - | tig0033204:5786-5805 | Msa1451100:intron | 30.0% | |
| TGCCAATATTGTATATCATC+TGG | - | tig0033204:5959-5978 | Msa1451100:intron | 30.0% | |
| CACCAGATGATATACAATAT+TGG | + | tig0033204:5964-5983 | None:intergenic | 30.0% | |
| !! | CTACTTTTCCTTCATATTGT+TGG | - | tig0033204:6262-6281 | Msa1451100:CDS | 30.0% |
| ! | AAAACGACTTTACTAGCTTA+AGG | - | tig0033204:6299-6318 | Msa1451100:intron | 30.0% |
| ! | AAACGACTTTACTAGCTTAA+GGG | - | tig0033204:6300-6319 | Msa1451100:intron | 30.0% |
| !!! | GTTTGGTTTTGATTCTTCTT+TGG | - | tig0033204:6715-6734 | Msa1451100:intron | 30.0% |
| TTTGGGAAAAAGGAAAAGAA+AGG | - | tig0033204:7127-7146 | Msa1451100:intron | 30.0% | |
| TTGGGAAAAAGGAAAAGAAA+GGG | - | tig0033204:7128-7147 | Msa1451100:intron | 30.0% | |
| !! | CACTTGAGCTTTTAAAAGAA+GGG | + | tig0033204:7170-7189 | None:intergenic | 30.0% |
| !! | CTTCTTTTAAAAGCTCAAGT+GGG | - | tig0033204:7169-7188 | Msa1451100:intron | 30.0% |
| TATACTTCCTCTGTGTTAAA+TGG | - | tig0033204:4897-4916 | Msa1451100:three_prime_UTR | 30.0% | |
| AAAGCATGATTGAAATAAGC+TGG | - | tig0033204:5314-5333 | Msa1451100:CDS | 30.0% | |
| TTGAGAATAACTACAACAAG+AGG | + | tig0033204:5380-5399 | None:intergenic | 30.0% | |
| TAGTTATTCTCAAGTTCAAC+AGG | - | tig0033204:5387-5406 | Msa1451100:intron | 30.0% | |
| TGAAGAAACATGTAGCAATA+TGG | - | tig0033204:5469-5488 | Msa1451100:intron | 30.0% | |
| ! | TTTGGCTCACAATTAAATAC+TGG | - | tig0033204:5534-5553 | Msa1451100:intron | 30.0% |
| CAATATAAACTTGACTGACA+TGG | - | tig0033204:5786-5805 | Msa1451100:intron | 30.0% | |
| TGCCAATATTGTATATCATC+TGG | - | tig0033204:5959-5978 | Msa1451100:intron | 30.0% | |
| CACCAGATGATATACAATAT+TGG | + | tig0033204:5964-5983 | None:intergenic | 30.0% | |
| !! | CTACTTTTCCTTCATATTGT+TGG | - | tig0033204:6262-6281 | Msa1451100:CDS | 30.0% |
| ! | AAAACGACTTTACTAGCTTA+AGG | - | tig0033204:6299-6318 | Msa1451100:intron | 30.0% |
| ! | AAACGACTTTACTAGCTTAA+GGG | - | tig0033204:6300-6319 | Msa1451100:intron | 30.0% |
| !!! | GTTTGGTTTTGATTCTTCTT+TGG | - | tig0033204:6715-6734 | Msa1451100:intron | 30.0% |
| TTTGGGAAAAAGGAAAAGAA+AGG | - | tig0033204:7127-7146 | Msa1451100:intron | 30.0% | |
| TTGGGAAAAAGGAAAAGAAA+GGG | - | tig0033204:7128-7147 | Msa1451100:intron | 30.0% | |
| !! | CACTTGAGCTTTTAAAAGAA+GGG | + | tig0033204:7170-7189 | None:intergenic | 30.0% |
| !! | CTTCTTTTAAAAGCTCAAGT+GGG | - | tig0033204:7169-7188 | Msa1451100:intron | 30.0% |
| TATTGCACCATTTAACACAG+AGG | + | tig0033204:4907-4926 | None:intergenic | 35.0% | |
| GAGGATTAACTACGCTAAAA+GGG | + | tig0033204:5361-5380 | None:intergenic | 35.0% | |
| AGAGGATTAACTACGCTAAA+AGG | + | tig0033204:5362-5381 | None:intergenic | 35.0% | |
| AAGTTCAACAGGAAATCACT+TGG | - | tig0033204:5398-5417 | Msa1451100:intron | 35.0% | |
| CAGGAAATCACTTGGAATTT+CGG | - | tig0033204:5406-5425 | Msa1451100:intron | 35.0% | |
| GTTAATGGTGACATGAGTTA+AGG | - | tig0033204:5569-5588 | Msa1451100:intron | 35.0% | |
| !! | ACTGACATGGTTTAATTTGC+AGG | - | tig0033204:5799-5818 | Msa1451100:intron | 35.0% |
| !! | TGAAAAACCAATTTGGCTTG+AGG | - | tig0033204:5841-5860 | Msa1451100:intron | 35.0% |
| GTTCTACTCATCAAATTCGT+AGG | - | tig0033204:5894-5913 | Msa1451100:intron | 35.0% | |
| GTACTGTACAGATTGCAATA+TGG | - | tig0033204:5931-5950 | Msa1451100:intron | 35.0% | |
| !! | TTTTGATTGCTCAGAGATTC+AGG | - | tig0033204:6063-6082 | Msa1451100:CDS | 35.0% |
| GAGAATCTCCAACAATATGA+AGG | + | tig0033204:6273-6292 | None:intergenic | 35.0% | |
| ! | TTTTGTCCTTCACTAACCAT+GGG | + | tig0033204:6483-6502 | None:intergenic | 35.0% |
| ! | TTTTTGTCCTTCACTAACCA+TGG | + | tig0033204:6484-6503 | None:intergenic | 35.0% |
| !! | TTTGATTTGCTAGAGAACAG+GGG | + | tig0033204:6581-6600 | None:intergenic | 35.0% |
| !! | GTTTGATTTGCTAGAGAACA+GGG | + | tig0033204:6582-6601 | None:intergenic | 35.0% |
| !! | TGTTTGATTTGCTAGAGAAC+AGG | + | tig0033204:6583-6602 | None:intergenic | 35.0% |
| TTACAAAAGCAACAGGAAAG+TGG | - | tig0033204:6746-6765 | Msa1451100:intron | 35.0% | |
| TTGATGCTATCTCACTGAAT+TGG | + | tig0033204:6791-6810 | None:intergenic | 35.0% | |
| ! | CTTTTTGTTGCAAACTTCAC+AGG | + | tig0033204:6826-6845 | None:intergenic | 35.0% |
| ! | CTTTTCCTTTTTCCCAAAGA+AGG | + | tig0033204:7125-7144 | None:intergenic | 35.0% |
| TAAAAGAAGGGAGATCTATG+AGG | + | tig0033204:7158-7177 | None:intergenic | 35.0% | |
| !! | CCACTTGAGCTTTTAAAAGA+AGG | + | tig0033204:7171-7190 | None:intergenic | 35.0% |
| !! | CCTTCTTTTAAAAGCTCAAG+TGG | - | tig0033204:7168-7187 | Msa1451100:intron | 35.0% |
| TATTGCACCATTTAACACAG+AGG | + | tig0033204:4907-4926 | None:intergenic | 35.0% | |
| GAGGATTAACTACGCTAAAA+GGG | + | tig0033204:5361-5380 | None:intergenic | 35.0% | |
| AGAGGATTAACTACGCTAAA+AGG | + | tig0033204:5362-5381 | None:intergenic | 35.0% | |
| AAGTTCAACAGGAAATCACT+TGG | - | tig0033204:5398-5417 | Msa1451100:intron | 35.0% | |
| CAGGAAATCACTTGGAATTT+CGG | - | tig0033204:5406-5425 | Msa1451100:intron | 35.0% | |
| GTTAATGGTGACATGAGTTA+AGG | - | tig0033204:5569-5588 | Msa1451100:intron | 35.0% | |
| !! | ACTGACATGGTTTAATTTGC+AGG | - | tig0033204:5799-5818 | Msa1451100:intron | 35.0% |
| !! | TGAAAAACCAATTTGGCTTG+AGG | - | tig0033204:5841-5860 | Msa1451100:intron | 35.0% |
| GTTCTACTCATCAAATTCGT+AGG | - | tig0033204:5894-5913 | Msa1451100:intron | 35.0% | |
| GTACTGTACAGATTGCAATA+TGG | - | tig0033204:5931-5950 | Msa1451100:intron | 35.0% | |
| !! | TTTTGATTGCTCAGAGATTC+AGG | - | tig0033204:6063-6082 | Msa1451100:CDS | 35.0% |
| GAGAATCTCCAACAATATGA+AGG | + | tig0033204:6273-6292 | None:intergenic | 35.0% | |
| ! | TTTTGTCCTTCACTAACCAT+GGG | + | tig0033204:6483-6502 | None:intergenic | 35.0% |
| ! | TTTTTGTCCTTCACTAACCA+TGG | + | tig0033204:6484-6503 | None:intergenic | 35.0% |
| !! | TTTGATTTGCTAGAGAACAG+GGG | + | tig0033204:6581-6600 | None:intergenic | 35.0% |
| !! | GTTTGATTTGCTAGAGAACA+GGG | + | tig0033204:6582-6601 | None:intergenic | 35.0% |
| !! | TGTTTGATTTGCTAGAGAAC+AGG | + | tig0033204:6583-6602 | None:intergenic | 35.0% |
| TTACAAAAGCAACAGGAAAG+TGG | - | tig0033204:6746-6765 | Msa1451100:intron | 35.0% | |
| TTGATGCTATCTCACTGAAT+TGG | + | tig0033204:6791-6810 | None:intergenic | 35.0% | |
| ! | CTTTTTGTTGCAAACTTCAC+AGG | + | tig0033204:6826-6845 | None:intergenic | 35.0% |
| ! | CTTTTCCTTTTTCCCAAAGA+AGG | + | tig0033204:7125-7144 | None:intergenic | 35.0% |
| TAAAAGAAGGGAGATCTATG+AGG | + | tig0033204:7158-7177 | None:intergenic | 35.0% | |
| !! | CCACTTGAGCTTTTAAAAGA+AGG | + | tig0033204:7171-7190 | None:intergenic | 35.0% |
| !! | CCTTCTTTTAAAAGCTCAAG+TGG | - | tig0033204:7168-7187 | Msa1451100:intron | 35.0% |
| AAAGAGTCACATAGAGACCA+AGG | + | tig0033204:4943-4962 | None:intergenic | 40.0% | |
| AATGGTGACATGAGTTAAGG+CGG | - | tig0033204:5572-5591 | Msa1451100:intron | 40.0% | |
| !! | GACATGGTTTAATTTGCAGG+AGG | - | tig0033204:5802-5821 | Msa1451100:intron | 40.0% |
| AAAAGAGCCTCAAGCCAAAT+TGG | + | tig0033204:5851-5870 | None:intergenic | 40.0% | |
| CGTAGACTTACAAAAGCAAC+AGG | - | tig0033204:6739-6758 | Msa1451100:intron | 40.0% | |
| GCACAGTAGCGATATAAATC+AGG | + | tig0033204:6858-6877 | None:intergenic | 40.0% | |
| AGTCATCACCTTGCAAGAAA+GGG | + | tig0033204:6880-6899 | None:intergenic | 40.0% | |
| TAGTCATCACCTTGCAAGAA+AGG | + | tig0033204:6881-6900 | None:intergenic | 40.0% | |
| CGATCAAAGAGGACAATAAG+TGG | + | tig0033204:6921-6940 | None:intergenic | 40.0% | |
| TATCGAATGTGCGATCAAAG+AGG | + | tig0033204:6932-6951 | None:intergenic | 40.0% | |
| TTCAAAAAAGTCCGAGTCTG+AGG | - | tig0033204:7007-7026 | Msa1451100:intron | 40.0% | |
| AAAGAGTCACATAGAGACCA+AGG | + | tig0033204:4943-4962 | None:intergenic | 40.0% | |
| AATGGTGACATGAGTTAAGG+CGG | - | tig0033204:5572-5591 | Msa1451100:intron | 40.0% | |
| !! | GACATGGTTTAATTTGCAGG+AGG | - | tig0033204:5802-5821 | Msa1451100:intron | 40.0% |
| AAAAGAGCCTCAAGCCAAAT+TGG | + | tig0033204:5851-5870 | None:intergenic | 40.0% | |
| CGTAGACTTACAAAAGCAAC+AGG | - | tig0033204:6739-6758 | Msa1451100:intron | 40.0% | |
| GCACAGTAGCGATATAAATC+AGG | + | tig0033204:6858-6877 | None:intergenic | 40.0% | |
| AGTCATCACCTTGCAAGAAA+GGG | + | tig0033204:6880-6899 | None:intergenic | 40.0% | |
| TAGTCATCACCTTGCAAGAA+AGG | + | tig0033204:6881-6900 | None:intergenic | 40.0% | |
| CGATCAAAGAGGACAATAAG+TGG | + | tig0033204:6921-6940 | None:intergenic | 40.0% | |
| TATCGAATGTGCGATCAAAG+AGG | + | tig0033204:6932-6951 | None:intergenic | 40.0% | |
| TTCAAAAAAGTCCGAGTCTG+AGG | - | tig0033204:7007-7026 | Msa1451100:intron | 40.0% | |
| ! | TGTTGTTGCTCTGAGTGCTA+TGG | - | tig0033204:6033-6052 | Msa1451100:intron | 45.0% |
| AGAAGAAGACAGAGCAGTAC+TGG | - | tig0033204:6375-6394 | Msa1451100:intron | 45.0% | |
| ! | TTTTGGATAGTCAGTACCCC+TGG | - | tig0033204:6448-6467 | Msa1451100:intron | 45.0% |
| AGTTGTCCCATGGTTAGTGA+AGG | - | tig0033204:6474-6493 | Msa1451100:intron | 45.0% | |
| !! | TCAAGTGGTGTTGTGCTAAC+TGG | + | tig0033204:7035-7054 | None:intergenic | 45.0% |
| AACACCACTTGAGTCCTCTT+CGG | - | tig0033204:7043-7062 | Msa1451100:intron | 45.0% | |
| GGAACTTCTGGACCTTCTTT+GGG | - | tig0033204:7110-7129 | Msa1451100:intron | 45.0% | |
| ! | CTGGACCTTCTTTGGGAAAA+AGG | - | tig0033204:7117-7136 | Msa1451100:intron | 45.0% |
| ! | TGTTGTTGCTCTGAGTGCTA+TGG | - | tig0033204:6033-6052 | Msa1451100:intron | 45.0% |
| AGAAGAAGACAGAGCAGTAC+TGG | - | tig0033204:6375-6394 | Msa1451100:intron | 45.0% | |
| ! | TTTTGGATAGTCAGTACCCC+TGG | - | tig0033204:6448-6467 | Msa1451100:intron | 45.0% |
| AGTTGTCCCATGGTTAGTGA+AGG | - | tig0033204:6474-6493 | Msa1451100:intron | 45.0% | |
| !! | TCAAGTGGTGTTGTGCTAAC+TGG | + | tig0033204:7035-7054 | None:intergenic | 45.0% |
| AACACCACTTGAGTCCTCTT+CGG | - | tig0033204:7043-7062 | Msa1451100:intron | 45.0% | |
| GGAACTTCTGGACCTTCTTT+GGG | - | tig0033204:7110-7129 | Msa1451100:intron | 45.0% | |
| ! | CTGGACCTTCTTTGGGAAAA+AGG | - | tig0033204:7117-7136 | Msa1451100:intron | 45.0% |
| ACCATGGGACAACTTGTCCA+GGG | + | tig0033204:6468-6487 | None:intergenic | 50.0% | |
| AACCATGGGACAACTTGTCC+AGG | + | tig0033204:6469-6488 | None:intergenic | 50.0% | |
| GCTATCTCACTGAATTGGCG+AGG | + | tig0033204:6786-6805 | None:intergenic | 50.0% | |
| CTACTGTGCCCTTTCTTGCA+AGG | - | tig0033204:6869-6888 | Msa1451100:intron | 50.0% | |
| GCTAACTGGATCCTCAGACT+CGG | + | tig0033204:7021-7040 | None:intergenic | 50.0% | |
| ACACCACTTGAGTCCTCTTC+GGG | - | tig0033204:7044-7063 | Msa1451100:intron | 50.0% | |
| TGTGTTTCCTGATGCTGAGG+AGG | + | tig0033204:7086-7105 | None:intergenic | 50.0% | |
| TCCTCAGCATCAGGAAACAC+AGG | - | tig0033204:7085-7104 | Msa1451100:intron | 50.0% | |
| TCCTGTGTTTCCTGATGCTG+AGG | + | tig0033204:7089-7108 | None:intergenic | 50.0% | |
| TCAGCATCAGGAAACACAGG+AGG | - | tig0033204:7088-7107 | Msa1451100:intron | 50.0% | |
| CAGCATCAGGAAACACAGGA+GGG | - | tig0033204:7089-7108 | Msa1451100:intron | 50.0% | |
| GAAACACAGGAGGGAACTTC+TGG | - | tig0033204:7098-7117 | Msa1451100:intron | 50.0% | |
| GGGAACTTCTGGACCTTCTT+TGG | - | tig0033204:7109-7128 | Msa1451100:intron | 50.0% | |
| ACCATGGGACAACTTGTCCA+GGG | + | tig0033204:6468-6487 | None:intergenic | 50.0% | |
| AACCATGGGACAACTTGTCC+AGG | + | tig0033204:6469-6488 | None:intergenic | 50.0% | |
| GCTATCTCACTGAATTGGCG+AGG | + | tig0033204:6786-6805 | None:intergenic | 50.0% | |
| CTACTGTGCCCTTTCTTGCA+AGG | - | tig0033204:6869-6888 | Msa1451100:intron | 50.0% | |
| GCTAACTGGATCCTCAGACT+CGG | + | tig0033204:7021-7040 | None:intergenic | 50.0% | |
| ACACCACTTGAGTCCTCTTC+GGG | - | tig0033204:7044-7063 | Msa1451100:intron | 50.0% | |
| TGTGTTTCCTGATGCTGAGG+AGG | + | tig0033204:7086-7105 | None:intergenic | 50.0% | |
| TCCTCAGCATCAGGAAACAC+AGG | - | tig0033204:7085-7104 | Msa1451100:intron | 50.0% | |
| TCCTGTGTTTCCTGATGCTG+AGG | + | tig0033204:7089-7108 | None:intergenic | 50.0% | |
| TCAGCATCAGGAAACACAGG+AGG | - | tig0033204:7088-7107 | Msa1451100:intron | 50.0% | |
| CAGCATCAGGAAACACAGGA+GGG | - | tig0033204:7089-7108 | Msa1451100:intron | 50.0% | |
| GAAACACAGGAGGGAACTTC+TGG | - | tig0033204:7098-7117 | Msa1451100:intron | 50.0% | |
| GGGAACTTCTGGACCTTCTT+TGG | - | tig0033204:7109-7128 | Msa1451100:intron | 50.0% | |
| CCATGGGACAACTTGTCCAG+GGG | + | tig0033204:6467-6486 | None:intergenic | 55.0% | |
| TCTTCGGGACCTTCCATCCA+GGG | - | tig0033204:7059-7078 | Msa1451100:intron | 55.0% | |
| CCATGGGACAACTTGTCCAG+GGG | + | tig0033204:6467-6486 | None:intergenic | 55.0% | |
| TCTTCGGGACCTTCCATCCA+GGG | - | tig0033204:7059-7078 | Msa1451100:intron | 55.0% | |
| CCCCTGGACAAGTTGTCCCA+TGG | - | tig0033204:6464-6483 | Msa1451100:intron | 60.0% | |
| GGTCCCGAAGAGGACTCAAG+TGG | + | tig0033204:7050-7069 | None:intergenic | 60.0% | |
| CTGGATGGAAGGTCCCGAAG+AGG | + | tig0033204:7060-7079 | None:intergenic | 60.0% | |
| CTCTTCGGGACCTTCCATCC+AGG | - | tig0033204:7058-7077 | Msa1451100:intron | 60.0% | |
| TGAGGAGGACCCTGGATGGA+AGG | + | tig0033204:7071-7090 | None:intergenic | 60.0% | |
| ATGCTGAGGAGGACCCTGGA+TGG | + | tig0033204:7075-7094 | None:intergenic | 60.0% | |
| CCCCTGGACAAGTTGTCCCA+TGG | - | tig0033204:6464-6483 | Msa1451100:intron | 60.0% | |
| GGTCCCGAAGAGGACTCAAG+TGG | + | tig0033204:7050-7069 | None:intergenic | 60.0% | |
| CTGGATGGAAGGTCCCGAAG+AGG | + | tig0033204:7060-7079 | None:intergenic | 60.0% | |
| CTCTTCGGGACCTTCCATCC+AGG | - | tig0033204:7058-7077 | Msa1451100:intron | 60.0% | |
| TGAGGAGGACCCTGGATGGA+AGG | + | tig0033204:7071-7090 | None:intergenic | 60.0% | |
| ATGCTGAGGAGGACCCTGGA+TGG | + | tig0033204:7075-7094 | None:intergenic | 60.0% | |
| CCTGATGCTGAGGAGGACCC+TGG | + | tig0033204:7079-7098 | None:intergenic | 65.0% | |
| CCAGGGTCCTCCTCAGCATC+AGG | - | tig0033204:7076-7095 | Msa1451100:intron | 65.0% | |
| CCTGATGCTGAGGAGGACCC+TGG | + | tig0033204:7079-7098 | None:intergenic | 65.0% | |
| CCAGGGTCCTCCTCAGCATC+AGG | - | tig0033204:7076-7095 | Msa1451100:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0033204 | gene | 4863 | 7256 | 4863 | ID=Msa1451100;Name=Msa1451100 |
| tig0033204 | mRNA | 4863 | 7256 | 4863 | ID=Msa1451100-mRNA-1;Parent=Msa1451100;Name=Msa1451100-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.66|0.75|0.75|1|1|4|78|200 |
| tig0033204 | exon | 4863 | 5123 | 4863 | ID=Msa1451100-mRNA-1:exon:17853;Parent=Msa1451100-mRNA-1 |
| tig0033204 | exon | 5229 | 5375 | 5229 | ID=Msa1451100-mRNA-1:exon:17852;Parent=Msa1451100-mRNA-1 |
| tig0033204 | exon | 6035 | 6298 | 6035 | ID=Msa1451100-mRNA-1:exon:17851;Parent=Msa1451100-mRNA-1 |
| tig0033204 | exon | 7248 | 7256 | 7248 | ID=Msa1451100-mRNA-1:exon:17850;Parent=Msa1451100-mRNA-1 |
| tig0033204 | CDS | 7248 | 7256 | 7248 | ID=Msa1451100-mRNA-1:cds;Parent=Msa1451100-mRNA-1 |
| tig0033204 | CDS | 6035 | 6298 | 6035 | ID=Msa1451100-mRNA-1:cds;Parent=Msa1451100-mRNA-1 |
| tig0033204 | CDS | 5229 | 5375 | 5229 | ID=Msa1451100-mRNA-1:cds;Parent=Msa1451100-mRNA-1 |
| tig0033204 | CDS | 4941 | 5123 | 4941 | ID=Msa1451100-mRNA-1:cds;Parent=Msa1451100-mRNA-1 |
| tig0033204 | three_prime_UTR | 4863 | 4940 | 4863 | ID=Msa1451100-mRNA-1:three_prime_utr;Parent=Msa1451100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
