Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085350 | XP_013447014.1 | 99.351 | 154 | 1 | 0 | 49 | 202 | 1 | 154 | 1.71e-108 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085350 | sp|Q1G3Q4|RITF1_ARATH | 34.356 | 163 | 102 | 3 | 11 | 172 | 2 | 160 | 2.27e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085350 | A0A072TV38 | 99.351 | 154 | 1 | 0 | 49 | 202 | 1 | 154 | 8.18e-109 | 317 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1085350 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0747920 | Msa1085350 | 0.823181 | 1.590423e-53 | -8.615850e-47 |
| Msa1085350 | Msa1451100 | 0.808369 | 3.204133e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085350 | MtrunA17_Chr8g0386511 | 99.351 | 154 | 1 | 0 | 49 | 202 | 1 | 154 | 1.58e-112 | 317 |
| Msa1085350 | MtrunA17_Chr5g0434331 | 38.889 | 198 | 98 | 3 | 5 | 202 | 33 | 207 | 3.64e-43 | 143 |
| Msa1085350 | MtrunA17_Chr7g0265291 | 34.483 | 203 | 116 | 6 | 12 | 201 | 4 | 202 | 5.12e-29 | 107 |
| Msa1085350 | MtrunA17_Chr1g0179781 | 32.323 | 198 | 120 | 5 | 15 | 201 | 7 | 201 | 3.34e-27 | 102 |
| Msa1085350 | MtrunA17_Chr2g0297251 | 36.538 | 156 | 94 | 3 | 14 | 168 | 36 | 187 | 9.44e-27 | 102 |
| Msa1085350 | MtrunA17_Chr4g0040071 | 30.303 | 198 | 123 | 6 | 15 | 201 | 15 | 208 | 3.77e-25 | 97.4 |
| Msa1085350 | MtrunA17_Chr7g0230511 | 31.148 | 183 | 108 | 6 | 15 | 184 | 9 | 186 | 4.66e-25 | 98.2 |
| Msa1085350 | MtrunA17_Chr4g0065041 | 36.111 | 144 | 87 | 3 | 13 | 155 | 6 | 145 | 4.69e-25 | 98.2 |
| Msa1085350 | MtrunA17_Chr5g0395181 | 29.353 | 201 | 134 | 5 | 5 | 201 | 11 | 207 | 3.66e-24 | 94.7 |
| Msa1085350 | MtrunA17_Chr5g0411151 | 31.343 | 201 | 119 | 6 | 15 | 201 | 35 | 230 | 1.13e-23 | 94.4 |
| Msa1085350 | MtrunA17_Chr8g0366581 | 30.000 | 200 | 123 | 7 | 15 | 201 | 33 | 228 | 4.21e-22 | 90.1 |
| Msa1085350 | MtrunA17_Chr8g0392151 | 32.432 | 148 | 75 | 5 | 17 | 143 | 15 | 158 | 1.12e-18 | 80.9 |
| Msa1085350 | MtrunA17_Chr2g0320561 | 30.769 | 169 | 102 | 8 | 17 | 173 | 6 | 171 | 9.68e-15 | 70.5 |
| Msa1085350 | MtrunA17_Chr4g0020811 | 29.861 | 144 | 79 | 6 | 17 | 145 | 8 | 144 | 7.40e-13 | 63.5 |
| Msa1085350 | MtrunA17_Chr1g0161601 | 41.975 | 81 | 44 | 2 | 17 | 97 | 50 | 127 | 1.40e-12 | 62.8 |
| Msa1085350 | MtrunA17_Chr2g0308401 | 29.861 | 144 | 79 | 6 | 17 | 145 | 6 | 142 | 1.71e-12 | 62.8 |
| Msa1085350 | MtrunA17_Chr2g0320551 | 32.867 | 143 | 82 | 6 | 17 | 148 | 6 | 145 | 1.17e-11 | 60.5 |
| Msa1085350 | MtrunA17_Chr4g0052451 | 38.095 | 84 | 44 | 2 | 66 | 143 | 10 | 91 | 2.94e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085350 | AT1G31040.1 | 32.900 | 231 | 106 | 8 | 14 | 201 | 18 | 242 | 9.17e-29 | 108 |
| Msa1085350 | AT2G27930.1 | 36.946 | 203 | 99 | 7 | 12 | 201 | 1 | 187 | 2.09e-28 | 105 |
| Msa1085350 | AT2G27930.4 | 36.946 | 203 | 99 | 7 | 12 | 201 | 1 | 187 | 2.09e-28 | 105 |
| Msa1085350 | AT2G01818.1 | 33.803 | 213 | 113 | 9 | 16 | 202 | 12 | 222 | 2.09e-27 | 103 |
| Msa1085350 | AT5G46710.3 | 33.019 | 212 | 103 | 6 | 15 | 201 | 12 | 209 | 2.40e-27 | 103 |
| Msa1085350 | AT5G46710.1 | 33.019 | 212 | 103 | 6 | 15 | 201 | 28 | 225 | 3.51e-27 | 103 |
| Msa1085350 | AT2G12646.1 | 34.356 | 163 | 102 | 3 | 11 | 172 | 2 | 160 | 2.31e-26 | 102 |
| Msa1085350 | AT2G12646.2 | 34.356 | 163 | 102 | 3 | 11 | 172 | 2 | 160 | 2.31e-26 | 102 |
| Msa1085350 | AT1G32700.1 | 32.195 | 205 | 123 | 6 | 9 | 201 | 6 | 206 | 6.89e-26 | 99.8 |
| Msa1085350 | AT2G12646.3 | 35.000 | 160 | 99 | 3 | 14 | 172 | 2 | 157 | 1.36e-25 | 100 |
| Msa1085350 | AT1G43000.2 | 32.407 | 216 | 117 | 8 | 11 | 201 | 12 | 223 | 6.33e-25 | 97.4 |
| Msa1085350 | AT1G43000.1 | 32.407 | 216 | 117 | 8 | 11 | 201 | 5 | 216 | 7.22e-25 | 97.1 |
| Msa1085350 | AT1G76590.1 | 32.432 | 185 | 111 | 6 | 1 | 183 | 4 | 176 | 8.13e-25 | 97.8 |
| Msa1085350 | AT4G17900.2 | 32.143 | 196 | 121 | 5 | 15 | 201 | 20 | 212 | 8.35e-25 | 97.1 |
| Msa1085350 | AT4G17900.1 | 32.143 | 196 | 121 | 5 | 15 | 201 | 34 | 226 | 1.11e-24 | 97.1 |
| Msa1085350 | AT3G60670.1 | 36.296 | 135 | 81 | 3 | 13 | 146 | 5 | 135 | 5.41e-24 | 95.5 |
| Msa1085350 | AT1G21000.1 | 28.511 | 235 | 116 | 9 | 15 | 201 | 16 | 246 | 3.26e-22 | 90.9 |
| Msa1085350 | AT1G21000.2 | 28.511 | 235 | 116 | 9 | 15 | 201 | 13 | 243 | 3.57e-22 | 90.9 |
| Msa1085350 | AT2G27930.3 | 38.462 | 143 | 74 | 5 | 12 | 143 | 1 | 140 | 1.91e-20 | 84.3 |
| Msa1085350 | AT2G27930.2 | 38.462 | 143 | 74 | 5 | 12 | 143 | 1 | 140 | 1.91e-20 | 84.3 |
| Msa1085350 | AT5G46710.2 | 36.090 | 133 | 80 | 4 | 13 | 143 | 26 | 155 | 3.91e-20 | 83.6 |
| Msa1085350 | AT1G32700.2 | 31.765 | 170 | 101 | 5 | 43 | 201 | 2 | 167 | 6.36e-19 | 80.5 |
| Msa1085350 | AT2G27930.5 | 33.793 | 145 | 70 | 4 | 68 | 201 | 61 | 190 | 2.13e-12 | 63.5 |
| Msa1085350 | AT2G27930.6 | 33.793 | 145 | 70 | 4 | 68 | 201 | 61 | 190 | 2.13e-12 | 63.5 |
| Msa1085350 | AT2G01818.2 | 33.121 | 157 | 80 | 7 | 69 | 202 | 4 | 158 | 1.33e-11 | 60.8 |
Find 40 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGACCTTCTTTGGGAAAA+AGG | 0.129448 | 7_2:+86010480 | Msa1085350:CDS |
| GGGAACTTCTGGACCTTCTT+TGG | 0.210937 | 7_2:+86010472 | Msa1085350:CDS |
| GAAACACAGGAGGGAACTTC+TGG | 0.286766 | 7_2:+86010461 | Msa1085350:CDS |
| AAAAGAGCCTCAAGCCAAAT+TGG | 0.306260 | 7_2:-86009211 | None:intergenic |
| GGAACTTCTGGACCTTCTTT+GGG | 0.337965 | 7_2:+86010473 | Msa1085350:CDS |
| TCAAGTGGTGTTGTGCTAAC+TGG | 0.344627 | 7_2:-86010395 | None:intergenic |
| CACCAGATGATATACAATAT+TGG | 0.377985 | 7_2:-86009324 | None:intergenic |
| CTCTTCGGGACCTTCCATCC+AGG | 0.401860 | 7_2:+86010421 | Msa1085350:CDS |
| TTGATGCTATCTCACTGAAT+TGG | 0.402058 | 7_2:-86010151 | None:intergenic |
| ACACCACTTGAGTCCTCTTC+GGG | 0.413177 | 7_2:+86010407 | Msa1085350:CDS |
| AACACCACTTGAGTCCTCTT+CGG | 0.418793 | 7_2:+86010406 | Msa1085350:CDS |
| CCAGGGTCCTCCTCAGCATC+AGG | 0.432791 | 7_2:+86010439 | Msa1085350:CDS |
| TAGTCATCACCTTGCAAGAA+AGG | 0.434907 | 7_2:-86010241 | None:intergenic |
| GCACAGTAGCGATATAAATC+AGG | 0.468363 | 7_2:-86010218 | None:intergenic |
| GTACTGTACAGATTGCAATA+TGG | 0.468846 | 7_2:+86009294 | Msa1085350:CDS |
| CTCATGGATGTGTGATTCCA+AGG | 0.471480 | 7_2:+86006924 | Msa1085350:exon |
| CGTAGACTTACAAAAGCAAC+AGG | 0.478767 | 7_2:+86010102 | Msa1085350:intron |
| CCTGATGCTGAGGAGGACCC+TGG | 0.491773 | 7_2:-86010439 | None:intergenic |
| CTACTGTGCCCTTTCTTGCA+AGG | 0.513621 | 7_2:+86010232 | Msa1085350:CDS |
| TCTTCGGGACCTTCCATCCA+GGG | 0.514865 | 7_2:+86010422 | Msa1085350:CDS |
| TCCTGTGTTTCCTGATGCTG+AGG | 0.533529 | 7_2:-86010449 | None:intergenic |
| TGCCAATATTGTATATCATC+TGG | 0.537908 | 7_2:+86009322 | Msa1085350:CDS |
| TAAAAGAAGGGAGATCTATG+AGG | 0.542712 | 7_2:-86010518 | None:intergenic |
| AGTCATCACCTTGCAAGAAA+GGG | 0.543071 | 7_2:-86010240 | None:intergenic |
| GTTCTACTCATCAAATTCGT+AGG | 0.546464 | 7_2:+86009257 | Msa1085350:CDS |
| TGTGTTTCCTGATGCTGAGG+AGG | 0.548455 | 7_2:-86010446 | None:intergenic |
| ATGCTGAGGAGGACCCTGGA+TGG | 0.559712 | 7_2:-86010435 | None:intergenic |
| GCGACTATCTCATACATAGC+AGG | 0.573109 | 7_2:-86006851 | None:intergenic |
| TGTTGTTGCTCTGAGTGCTA+TGG | 0.578177 | 7_2:+86009396 | Msa1085350:CDS |
| TTACAAAAGCAACAGGAAAG+TGG | 0.586060 | 7_2:+86010109 | Msa1085350:CDS |
| TCCTCAGCATCAGGAAACAC+AGG | 0.589871 | 7_2:+86010448 | Msa1085350:CDS |
| TGAGGAGGACCCTGGATGGA+AGG | 0.592506 | 7_2:-86010431 | None:intergenic |
| CATAGCAGGTGAAGTGCGAG+TGG | 0.593200 | 7_2:-86006837 | None:intergenic |
| AATATATAGACATATTTACA+AGG | 0.614023 | 7_2:+86009372 | Msa1085350:CDS |
| GCTATCTCACTGAATTGGCG+AGG | 0.635923 | 7_2:-86010146 | None:intergenic |
| TCAGCATCAGGAAACACAGG+AGG | 0.659675 | 7_2:+86010451 | Msa1085350:CDS |
| GCTAACTGGATCCTCAGACT+CGG | 0.666411 | 7_2:-86010381 | None:intergenic |
| GGTCCCGAAGAGGACTCAAG+TGG | 0.687578 | 7_2:-86010410 | None:intergenic |
| CAGCATCAGGAAACACAGGA+GGG | 0.689712 | 7_2:+86010452 | Msa1085350:CDS |
| CTGGATGGAAGGTCCCGAAG+AGG | 0.694672 | 7_2:-86010420 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAGATTAAAAATTAAAAAT+AGG | - | chr7_2:86008168-86008187 | None:intergenic | 10.0% |
| !! | AAATTATATTTATTTGTGTT+TGG | + | chr7_2:86008879-86008898 | Msa1085350:intron | 10.0% |
| !! | ATATATTGTATGTTTAATAT+GGG | - | chr7_2:86008963-86008982 | None:intergenic | 10.0% |
| !! | AATATATTGTATGTTTAATA+TGG | - | chr7_2:86008964-86008983 | None:intergenic | 10.0% |
| !! | TTTCATAATATATCATTCTA+TGG | + | chr7_2:86007681-86007700 | Msa1085350:intron | 15.0% |
| !!! | TAAATTTTGTAAAGACTAAA+TGG | - | chr7_2:86007834-86007853 | None:intergenic | 15.0% |
| !!! | TAATTTTTAATCTGTATAAG+AGG | + | chr7_2:86008173-86008192 | Msa1085350:intron | 15.0% |
| !!! | TATCTTTACATATTTTTACA+TGG | + | chr7_2:86008542-86008561 | Msa1085350:intron | 15.0% |
| !!! | TATATATTTTCAGTATTTTG+TGG | - | chr7_2:86009360-86009379 | None:intergenic | 15.0% |
| !! | AATATATAGACATATTTACA+AGG | + | chr7_2:86009372-86009391 | Msa1085350:CDS | 15.0% |
| !! | TTGAGGTTTATTGAAAATTA+GGG | + | chr7_2:86007134-86007153 | Msa1085350:intron | 20.0% |
| !!! | TATACAAATTTCCCATTTTT+CGG | - | chr7_2:86007164-86007183 | None:intergenic | 20.0% |
| !! | TTAAATTTAGCATTAAAGGA+TGG | - | chr7_2:86007229-86007248 | None:intergenic | 20.0% |
| !!! | AGCTTTAAATTTAGCATTAA+AGG | - | chr7_2:86007233-86007252 | None:intergenic | 20.0% |
| !!! | AAAATAAAGATTGTTTCTGT+TGG | + | chr7_2:86007622-86007641 | Msa1085350:intron | 20.0% |
| !! | ATAATATATCATTCTATGGA+AGG | + | chr7_2:86007685-86007704 | Msa1085350:intron | 20.0% |
| !! | TATGAAAAAGTTCATATACT+TGG | - | chr7_2:86007872-86007891 | None:intergenic | 20.0% |
| !! | AATATTCAATTAAAACTCCT+TGG | + | chr7_2:86008286-86008305 | Msa1085350:intron | 20.0% |
| !!! | ATAGATAAGCTCTTAAATTT+TGG | + | chr7_2:86008379-86008398 | Msa1085350:intron | 20.0% |
| !!! | TGAATATGAAGTACTTTATT+AGG | + | chr7_2:86008444-86008463 | Msa1085350:intron | 20.0% |
| !!! | AAGATTTTCAAAGATAAACA+TGG | - | chr7_2:86008598-86008617 | None:intergenic | 20.0% |
| !!! | AATCATGCTTTAAAATGAAT+TGG | - | chr7_2:86008668-86008687 | None:intergenic | 20.0% |
| !! | ATATGTTAATTAGCATACAT+TGG | - | chr7_2:86009026-86009045 | None:intergenic | 20.0% |
| !!! | CTTTTGAGAGAAAATTATTT+TGG | + | chr7_2:86009229-86009248 | Msa1085350:CDS | 20.0% |
| !! | TTGTATGTTGAAAAATGAAA+AGG | + | chr7_2:86009785-86009804 | Msa1085350:intron | 20.0% |
| !! | TGTATGTTGAAAAATGAAAA+GGG | + | chr7_2:86009786-86009805 | Msa1085350:intron | 20.0% |
| !!! | AAAAATTCATGTTTTTGTCT+AGG | + | chr7_2:86009862-86009881 | Msa1085350:intron | 20.0% |
| !! | GAGTTATTTGTAATTAAGTA+GGG | - | chr7_2:86009971-86009990 | None:intergenic | 20.0% |
| !! | AGAGTTATTTGTAATTAAGT+AGG | - | chr7_2:86009972-86009991 | None:intergenic | 20.0% |
| !! | ACATAGTAAAAAAATTGGTT+CGG | - | chr7_2:86010058-86010077 | None:intergenic | 20.0% |
| !! | CAAACACATAGTAAAAAAAT+TGG | - | chr7_2:86010063-86010082 | None:intergenic | 20.0% |
| !!! | CAATTTTTTTACTATGTGTT+TGG | + | chr7_2:86010061-86010080 | Msa1085350:intron | 20.0% |
| !!! | TTTTTATCTGAATTTTCATC+AGG | + | chr7_2:86010337-86010356 | Msa1085350:intron | 20.0% |
| !! | TTATGAGTGAAATTTTACCT+TGG | - | chr7_2:86006944-86006963 | None:intergenic | 25.0% |
| !! | TTTGCTTCAATTCATTTTAG+CGG | + | chr7_2:86006974-86006993 | Msa1085350:intron | 25.0% |
| ! | CTAAATCTAACTAACCAAAT+TGG | - | chr7_2:86007003-86007022 | None:intergenic | 25.0% |
| !! | TTTCCATGGATATTATTTCT+AGG | + | chr7_2:86007084-86007103 | Msa1085350:intron | 25.0% |
| ! | AAACCTAGAAATAATATCCA+TGG | - | chr7_2:86007090-86007109 | None:intergenic | 25.0% |
| ! | AATTCAATGTTATATGCTTG+AGG | + | chr7_2:86007117-86007136 | Msa1085350:intron | 25.0% |
| ! | CTTGAGGTTTATTGAAAATT+AGG | + | chr7_2:86007133-86007152 | Msa1085350:intron | 25.0% |
| ! | AAATTTGTATACCAAGTCTT+GGG | + | chr7_2:86007173-86007192 | Msa1085350:intron | 25.0% |
| !!! | CAATTTTTAAGACTAGAACA+GGG | - | chr7_2:86007296-86007315 | None:intergenic | 25.0% |
| !!! | CTGTTCTAGTCTTAAAAATT+GGG | + | chr7_2:86007295-86007314 | Msa1085350:intron | 25.0% |
| !! | AATTTGGGTTAATATGTTAC+AGG | - | chr7_2:86007517-86007536 | None:intergenic | 25.0% |
| ! | TCAAAATATATAGGATCACA+AGG | - | chr7_2:86007600-86007619 | None:intergenic | 25.0% |
| ! | ATTGCAAATTTCTCAACAAA+TGG | - | chr7_2:86007648-86007667 | None:intergenic | 25.0% |
| !! | ATTTGTTGAGAAATTTGCAA+TGG | + | chr7_2:86007647-86007666 | Msa1085350:intron | 25.0% |
| ! | ATAAAACATAACTCTTCCAT+TGG | + | chr7_2:86007729-86007748 | Msa1085350:intron | 25.0% |
| ! | TTCATAAAAACAAATGCCAA+TGG | - | chr7_2:86007748-86007767 | None:intergenic | 25.0% |
| ! | CAAAAAAGGAAAACCAAATT+TGG | - | chr7_2:86007975-86007994 | None:intergenic | 25.0% |
| ! | TCATATACTAAGTGCAAAAA+AGG | - | chr7_2:86007989-86008008 | None:intergenic | 25.0% |
| ! | TTCTTCTACAAAAATGAACA+TGG | + | chr7_2:86008213-86008232 | Msa1085350:intron | 25.0% |
| ! | GCTTATCTATATCAAAAGAA+CGG | - | chr7_2:86008369-86008388 | None:intergenic | 25.0% |
| ! | AACAATATTGCGAAGAAATA+TGG | - | chr7_2:86008510-86008529 | None:intergenic | 25.0% |
| ! | TGGTAGAAACATCTTATTAA+TGG | - | chr7_2:86008578-86008597 | None:intergenic | 25.0% |
| !!! | ATGCTTTAAAATGAATTGGT+TGG | - | chr7_2:86008664-86008683 | None:intergenic | 25.0% |
| !!! | CAATATGGAAGTATCAATTT+TGG | + | chr7_2:86008847-86008866 | Msa1085350:intron | 25.0% |
| !!! | TGGTTTTTTTGTTGTGTTAA+TGG | + | chr7_2:86008917-86008936 | Msa1085350:intron | 25.0% |
| !!! | TGGTTTTTCAACATTACTTT+GGG | - | chr7_2:86009194-86009213 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTCAACATTACTT+TGG | - | chr7_2:86009195-86009214 | None:intergenic | 25.0% |
| ! | GTAATGTTGAAAAACCAATT+TGG | + | chr7_2:86009197-86009216 | Msa1085350:CDS | 25.0% |
| !! | ATATTTTCAGTATTTTGTGG+TGG | - | chr7_2:86009357-86009376 | None:intergenic | 25.0% |
| !!! | GAAAAATGAAAAGGGTATTT+TGG | + | chr7_2:86009794-86009813 | Msa1085350:intron | 25.0% |
| ! | TTGATTTAGAAACTGATCAT+AGG | - | chr7_2:86009891-86009910 | None:intergenic | 25.0% |
| ATAATCGATGCAAATTTCCA+TGG | + | chr7_2:86007070-86007089 | Msa1085350:intron | 30.0% | |
| GAAATTTGTATACCAAGTCT+TGG | + | chr7_2:86007172-86007191 | Msa1085350:intron | 30.0% | |
| TTAGCATTAAAGGATGGAAT+AGG | - | chr7_2:86007223-86007242 | None:intergenic | 30.0% | |
| !!! | CCAATTTTTAAGACTAGAAC+AGG | - | chr7_2:86007297-86007316 | None:intergenic | 30.0% |
| !! | CCTGTTCTAGTCTTAAAAAT+TGG | + | chr7_2:86007294-86007313 | Msa1085350:intron | 30.0% |
| ! | AATGGATCTTCTTGAGTTTT+TGG | - | chr7_2:86007340-86007359 | None:intergenic | 30.0% |
| TTCATATACTTGGTACACAA+TGG | - | chr7_2:86007862-86007881 | None:intergenic | 30.0% | |
| AACGTAGACTTTACCAAATT+TGG | + | chr7_2:86007959-86007978 | Msa1085350:intron | 30.0% | |
| ACAAAAATGAACATGGTATG+TGG | + | chr7_2:86008220-86008239 | Msa1085350:intron | 30.0% | |
| TATACTTCCTCTGTGTTAAA+TGG | + | chr7_2:86008260-86008279 | Msa1085350:intron | 30.0% | |
| AAAGCATGATTGAAATAAGC+TGG | + | chr7_2:86008677-86008696 | Msa1085350:intron | 30.0% | |
| TTGAGAATAACTACAACAAG+AGG | - | chr7_2:86008743-86008762 | None:intergenic | 30.0% | |
| TAGTTATTCTCAAGTTCAAC+AGG | + | chr7_2:86008750-86008769 | Msa1085350:intron | 30.0% | |
| TGAAGAAACATGTAGCAATA+TGG | + | chr7_2:86008832-86008851 | Msa1085350:intron | 30.0% | |
| ! | TTTGGCTCACAATTAAATAC+TGG | + | chr7_2:86008897-86008916 | Msa1085350:intron | 30.0% |
| CAATATAAACTTGACTGACA+TGG | + | chr7_2:86009149-86009168 | Msa1085350:intron | 30.0% | |
| TGCCAATATTGTATATCATC+TGG | + | chr7_2:86009322-86009341 | Msa1085350:CDS | 30.0% | |
| CACCAGATGATATACAATAT+TGG | - | chr7_2:86009327-86009346 | None:intergenic | 30.0% | |
| !! | CTACTTTTCCTTCATATTGT+TGG | + | chr7_2:86009625-86009644 | Msa1085350:intron | 30.0% |
| ! | AAAACGACTTTACTAGCTTA+AGG | + | chr7_2:86009662-86009681 | Msa1085350:intron | 30.0% |
| ! | AAACGACTTTACTAGCTTAA+GGG | + | chr7_2:86009663-86009682 | Msa1085350:intron | 30.0% |
| !!! | GTTTGGTTTTGATTCTTCTT+TGG | + | chr7_2:86010078-86010097 | Msa1085350:intron | 30.0% |
| TTTGGGAAAAAGGAAAAGAA+AGG | + | chr7_2:86010490-86010509 | Msa1085350:CDS | 30.0% | |
| TTGGGAAAAAGGAAAAGAAA+GGG | + | chr7_2:86010491-86010510 | Msa1085350:CDS | 30.0% | |
| !! | CACTTGAGCTTTTAAAAGAA+GGG | - | chr7_2:86010533-86010552 | None:intergenic | 30.0% |
| !! | CTTCTTTTAAAAGCTCAAGT+GGG | + | chr7_2:86010532-86010551 | Msa1085350:exon | 30.0% |
| !! | CATTTTAGCGGAATCCAATT+TGG | + | chr7_2:86006986-86007005 | Msa1085350:intron | 35.0% |
| AATTAGGGTCTTCCGAAAAA+TGG | + | chr7_2:86007149-86007168 | Msa1085350:intron | 35.0% | |
| ATTAGGGTCTTCCGAAAAAT+GGG | + | chr7_2:86007150-86007169 | Msa1085350:intron | 35.0% | |
| GCAAGCAAAACGAAAAAAGT+AGG | - | chr7_2:86007449-86007468 | None:intergenic | 35.0% | |
| AATTAGGGGGTCTCAAATTT+GGG | - | chr7_2:86007532-86007551 | None:intergenic | 35.0% | |
| AAATTAGGGGGTCTCAAATT+TGG | - | chr7_2:86007533-86007552 | None:intergenic | 35.0% | |
| AATATATAGGATCACAAGGC+CGG | - | chr7_2:86007596-86007615 | None:intergenic | 35.0% | |
| TCATAATCAAAAAGTGAGCC+CGG | + | chr7_2:86007887-86007906 | Msa1085350:intron | 35.0% | |
| !! | ATAAGCAGAGTTTTGATACC+GGG | - | chr7_2:86007908-86007927 | None:intergenic | 35.0% |
| !! | CATAAGCAGAGTTTTGATAC+CGG | - | chr7_2:86007909-86007928 | None:intergenic | 35.0% |
| TCTGTATAAGAGGATAACGA+CGG | + | chr7_2:86008183-86008202 | Msa1085350:intron | 35.0% | |
| TATTGCACCATTTAACACAG+AGG | - | chr7_2:86008270-86008289 | None:intergenic | 35.0% | |
| GAGGATTAACTACGCTAAAA+GGG | - | chr7_2:86008724-86008743 | None:intergenic | 35.0% | |
| AGAGGATTAACTACGCTAAA+AGG | - | chr7_2:86008725-86008744 | None:intergenic | 35.0% | |
| AAGTTCAACAGGAAATCACT+TGG | + | chr7_2:86008761-86008780 | Msa1085350:intron | 35.0% | |
| CAGGAAATCACTTGGAATTT+CGG | + | chr7_2:86008769-86008788 | Msa1085350:intron | 35.0% | |
| GTTAATGGTGACATGAGTTA+AGG | + | chr7_2:86008932-86008951 | Msa1085350:intron | 35.0% | |
| !! | ACTGACATGGTTTAATTTGC+AGG | + | chr7_2:86009162-86009181 | Msa1085350:intron | 35.0% |
| !! | TGAAAAACCAATTTGGCTTG+AGG | + | chr7_2:86009204-86009223 | Msa1085350:CDS | 35.0% |
| GTTCTACTCATCAAATTCGT+AGG | + | chr7_2:86009257-86009276 | Msa1085350:CDS | 35.0% | |
| GTACTGTACAGATTGCAATA+TGG | + | chr7_2:86009294-86009313 | Msa1085350:CDS | 35.0% | |
| !! | TTTTGATTGCTCAGAGATTC+AGG | + | chr7_2:86009426-86009445 | Msa1085350:CDS | 35.0% |
| GAGAATCTCCAACAATATGA+AGG | - | chr7_2:86009636-86009655 | None:intergenic | 35.0% | |
| ! | TTTTGTCCTTCACTAACCAT+GGG | - | chr7_2:86009846-86009865 | None:intergenic | 35.0% |
| ! | TTTTTGTCCTTCACTAACCA+TGG | - | chr7_2:86009847-86009866 | None:intergenic | 35.0% |
| !! | TTTGATTTGCTAGAGAACAG+GGG | - | chr7_2:86009944-86009963 | None:intergenic | 35.0% |
| !! | GTTTGATTTGCTAGAGAACA+GGG | - | chr7_2:86009945-86009964 | None:intergenic | 35.0% |
| !! | TGTTTGATTTGCTAGAGAAC+AGG | - | chr7_2:86009946-86009965 | None:intergenic | 35.0% |
| TTACAAAAGCAACAGGAAAG+TGG | + | chr7_2:86010109-86010128 | Msa1085350:CDS | 35.0% | |
| TTGATGCTATCTCACTGAAT+TGG | - | chr7_2:86010154-86010173 | None:intergenic | 35.0% | |
| ! | CTTTTTGTTGCAAACTTCAC+AGG | - | chr7_2:86010189-86010208 | None:intergenic | 35.0% |
| ! | CTTTTCCTTTTTCCCAAAGA+AGG | - | chr7_2:86010488-86010507 | None:intergenic | 35.0% |
| TAAAAGAAGGGAGATCTATG+AGG | - | chr7_2:86010521-86010540 | None:intergenic | 35.0% | |
| !! | CCACTTGAGCTTTTAAAAGA+AGG | - | chr7_2:86010534-86010553 | None:intergenic | 35.0% |
| !! | CCTTCTTTTAAAAGCTCAAG+TGG | + | chr7_2:86010531-86010550 | Msa1085350:exon | 35.0% |
| ! | AGCTCACTCTTCTTTTCTCA+TGG | + | chr7_2:86006908-86006927 | Msa1085350:five_prime_UTR | 40.0% |
| ACCAAGTCTTGGGATTGTTA+TGG | + | chr7_2:86007183-86007202 | Msa1085350:intron | 40.0% | |
| ACTAGAACAGGGTCTCTAAA+TGG | - | chr7_2:86007285-86007304 | None:intergenic | 40.0% | |
| !! | TTTGAGACCCCCTAATTTTG+AGG | + | chr7_2:86007535-86007554 | Msa1085350:intron | 40.0% |
| CGCGATTGAATCTGACTAAA+CGG | - | chr7_2:86008095-86008114 | None:intergenic | 40.0% | |
| CTGTATAAGAGGATAACGAC+GGG | + | chr7_2:86008184-86008203 | Msa1085350:intron | 40.0% | |
| AAAGAGTCACATAGAGACCA+AGG | - | chr7_2:86008306-86008325 | None:intergenic | 40.0% | |
| AATGGTGACATGAGTTAAGG+CGG | + | chr7_2:86008935-86008954 | Msa1085350:intron | 40.0% | |
| !! | GACATGGTTTAATTTGCAGG+AGG | + | chr7_2:86009165-86009184 | Msa1085350:intron | 40.0% |
| AAAAGAGCCTCAAGCCAAAT+TGG | - | chr7_2:86009214-86009233 | None:intergenic | 40.0% | |
| CGTAGACTTACAAAAGCAAC+AGG | + | chr7_2:86010102-86010121 | Msa1085350:intron | 40.0% | |
| GCACAGTAGCGATATAAATC+AGG | - | chr7_2:86010221-86010240 | None:intergenic | 40.0% | |
| AGTCATCACCTTGCAAGAAA+GGG | - | chr7_2:86010243-86010262 | None:intergenic | 40.0% | |
| TAGTCATCACCTTGCAAGAA+AGG | - | chr7_2:86010244-86010263 | None:intergenic | 40.0% | |
| CGATCAAAGAGGACAATAAG+TGG | - | chr7_2:86010284-86010303 | None:intergenic | 40.0% | |
| TATCGAATGTGCGATCAAAG+AGG | - | chr7_2:86010295-86010314 | None:intergenic | 40.0% | |
| TTCAAAAAAGTCCGAGTCTG+AGG | + | chr7_2:86010370-86010389 | Msa1085350:CDS | 40.0% | |
| GCGACTATCTCATACATAGC+AGG | - | chr7_2:86006854-86006873 | None:intergenic | 45.0% | |
| CTCATGGATGTGTGATTCCA+AGG | + | chr7_2:86006924-86006943 | Msa1085350:exon | 45.0% | |
| GCCATAACAATCCCAAGACT+TGG | - | chr7_2:86007187-86007206 | None:intergenic | 45.0% | |
| AAGCTCAATGTGTGTGCTTG+AGG | + | chr7_2:86007248-86007267 | Msa1085350:intron | 45.0% | |
| AGCTCAATGTGTGTGCTTGA+GGG | + | chr7_2:86007249-86007268 | Msa1085350:intron | 45.0% | |
| AGCACAGGGCCTCAAAATTA+GGG | - | chr7_2:86007547-86007566 | None:intergenic | 45.0% | |
| TAGCACAGGGCCTCAAAATT+AGG | - | chr7_2:86007548-86007567 | None:intergenic | 45.0% | |
| !!! | AATTTTGAGGCCCTGTGCTA+AGG | + | chr7_2:86007548-86007567 | Msa1085350:intron | 45.0% |
| !!! | ATTTTGAGGCCCTGTGCTAA+GGG | + | chr7_2:86007549-86007568 | Msa1085350:intron | 45.0% |
| AACCGAGCCTCGTATCAAAA+TGG | + | chr7_2:86008026-86008045 | Msa1085350:intron | 45.0% | |
| GGAGAAAGAATAACCCTAGG+CGG | - | chr7_2:86008052-86008071 | None:intergenic | 45.0% | |
| AGGGGAGAAAGAATAACCCT+AGG | - | chr7_2:86008055-86008074 | None:intergenic | 45.0% | |
| ! | TGTTGTTGCTCTGAGTGCTA+TGG | + | chr7_2:86009396-86009415 | Msa1085350:CDS | 45.0% |
| AGAAGAAGACAGAGCAGTAC+TGG | + | chr7_2:86009738-86009757 | Msa1085350:intron | 45.0% | |
| ! | TTTTGGATAGTCAGTACCCC+TGG | + | chr7_2:86009811-86009830 | Msa1085350:intron | 45.0% |
| AGTTGTCCCATGGTTAGTGA+AGG | + | chr7_2:86009837-86009856 | Msa1085350:intron | 45.0% | |
| !! | TCAAGTGGTGTTGTGCTAAC+TGG | - | chr7_2:86010398-86010417 | None:intergenic | 45.0% |
| AACACCACTTGAGTCCTCTT+CGG | + | chr7_2:86010406-86010425 | Msa1085350:CDS | 45.0% | |
| GGAACTTCTGGACCTTCTTT+GGG | + | chr7_2:86010473-86010492 | Msa1085350:CDS | 45.0% | |
| ! | CTGGACCTTCTTTGGGAAAA+AGG | + | chr7_2:86010480-86010499 | Msa1085350:CDS | 45.0% |
| !! | ATTTAAATAGATAAATAAAA+TGG | - | chr7_2:86007358-86007377 | None:intergenic | 5.0% |
| !!! | TTATTTTTTTCAAAATATAT+AGG | - | chr7_2:86007609-86007628 | None:intergenic | 5.0% |
| ! | TTTTCCTAGCGTGAGAAGCG+AGG | + | chr7_2:86007471-86007490 | Msa1085350:intron | 50.0% |
| TTTCCTAGCGTGAGAAGCGA+GGG | + | chr7_2:86007472-86007491 | Msa1085350:intron | 50.0% | |
| AGGGAGTGGATGTGTGGATT+GGG | + | chr7_2:86007491-86007510 | Msa1085350:intron | 50.0% | |
| CACAGGGCCTCAAAATTAGG+GGG | - | chr7_2:86007545-86007564 | None:intergenic | 50.0% | |
| GCACAGGGCCTCAAAATTAG+GGG | - | chr7_2:86007546-86007565 | None:intergenic | 50.0% | |
| ! | TTGATACGAGGCTCGGTTTC+TGG | - | chr7_2:86008024-86008043 | None:intergenic | 50.0% |
| !! | GGCCATTTTGATACGAGGCT+CGG | - | chr7_2:86008031-86008050 | None:intergenic | 50.0% |
| !! | TAGGCGGCCATTTTGATACG+AGG | - | chr7_2:86008036-86008055 | None:intergenic | 50.0% |
| TCGTATCAAAATGGCCGCCT+AGG | + | chr7_2:86008035-86008054 | Msa1085350:intron | 50.0% | |
| CGTATCAAAATGGCCGCCTA+GGG | + | chr7_2:86008036-86008055 | Msa1085350:intron | 50.0% | |
| ! | TCCCCTTTTCCTCTACTGCT+TGG | + | chr7_2:86008069-86008088 | Msa1085350:intron | 50.0% |
| GCCAAGCAGTAGAGGAAAAG+GGG | - | chr7_2:86008073-86008092 | None:intergenic | 50.0% | |
| GGCCAAGCAGTAGAGGAAAA+GGG | - | chr7_2:86008074-86008093 | None:intergenic | 50.0% | |
| ACTAAACGGCCAAGCAGTAG+AGG | - | chr7_2:86008081-86008100 | None:intergenic | 50.0% | |
| ACCATGGGACAACTTGTCCA+GGG | - | chr7_2:86009831-86009850 | None:intergenic | 50.0% | |
| AACCATGGGACAACTTGTCC+AGG | - | chr7_2:86009832-86009851 | None:intergenic | 50.0% | |
| GCTATCTCACTGAATTGGCG+AGG | - | chr7_2:86010149-86010168 | None:intergenic | 50.0% | |
| CTACTGTGCCCTTTCTTGCA+AGG | + | chr7_2:86010232-86010251 | Msa1085350:CDS | 50.0% | |
| GCTAACTGGATCCTCAGACT+CGG | - | chr7_2:86010384-86010403 | None:intergenic | 50.0% | |
| ACACCACTTGAGTCCTCTTC+GGG | + | chr7_2:86010407-86010426 | Msa1085350:CDS | 50.0% | |
| TGTGTTTCCTGATGCTGAGG+AGG | - | chr7_2:86010449-86010468 | None:intergenic | 50.0% | |
| TCCTCAGCATCAGGAAACAC+AGG | + | chr7_2:86010448-86010467 | Msa1085350:CDS | 50.0% | |
| TCCTGTGTTTCCTGATGCTG+AGG | - | chr7_2:86010452-86010471 | None:intergenic | 50.0% | |
| TCAGCATCAGGAAACACAGG+AGG | + | chr7_2:86010451-86010470 | Msa1085350:CDS | 50.0% | |
| CAGCATCAGGAAACACAGGA+GGG | + | chr7_2:86010452-86010471 | Msa1085350:CDS | 50.0% | |
| GAAACACAGGAGGGAACTTC+TGG | + | chr7_2:86010461-86010480 | Msa1085350:CDS | 50.0% | |
| GGGAACTTCTGGACCTTCTT+TGG | + | chr7_2:86010472-86010491 | Msa1085350:CDS | 50.0% | |
| CATAGCAGGTGAAGTGCGAG+TGG | - | chr7_2:86006840-86006859 | None:intergenic | 55.0% | |
| GAGGGAGTGGATGTGTGGAT+TGG | + | chr7_2:86007490-86007509 | Msa1085350:intron | 55.0% | |
| GCAACAAGGCCCTTAGCACA+GGG | - | chr7_2:86007561-86007580 | None:intergenic | 55.0% | |
| TGCAACAAGGCCCTTAGCAC+AGG | - | chr7_2:86007562-86007581 | None:intergenic | 55.0% | |
| !! | AGGGCCTTGTTGCACTTGCA+CGG | + | chr7_2:86007568-86007587 | Msa1085350:intron | 55.0% |
| CGGCCAAGCAGTAGAGGAAA+AGG | - | chr7_2:86008075-86008094 | None:intergenic | 55.0% | |
| CCATGGGACAACTTGTCCAG+GGG | - | chr7_2:86009830-86009849 | None:intergenic | 55.0% | |
| TCTTCGGGACCTTCCATCCA+GGG | + | chr7_2:86010422-86010441 | Msa1085350:CDS | 55.0% | |
| ACTCCCTCGCTTCTCACGCT+AGG | - | chr7_2:86007478-86007497 | None:intergenic | 60.0% | |
| TAGCGTGAGAAGCGAGGGAG+TGG | + | chr7_2:86007477-86007496 | Msa1085350:intron | 60.0% | |
| GAAGCGAGGGAGTGGATGTG+TGG | + | chr7_2:86007485-86007504 | Msa1085350:intron | 60.0% | |
| !! | GGGCCTTGTTGCACTTGCAC+GGG | + | chr7_2:86007569-86007588 | Msa1085350:intron | 60.0% |
| !! | GGCCTTGTTGCACTTGCACG+GGG | + | chr7_2:86007570-86007589 | Msa1085350:intron | 60.0% |
| TTGTTGCACTTGCACGGGGC+CGG | + | chr7_2:86007574-86007593 | Msa1085350:intron | 60.0% | |
| CCCCTGGACAAGTTGTCCCA+TGG | + | chr7_2:86009827-86009846 | Msa1085350:intron | 60.0% | |
| GGTCCCGAAGAGGACTCAAG+TGG | - | chr7_2:86010413-86010432 | None:intergenic | 60.0% | |
| CTGGATGGAAGGTCCCGAAG+AGG | - | chr7_2:86010423-86010442 | None:intergenic | 60.0% | |
| CTCTTCGGGACCTTCCATCC+AGG | + | chr7_2:86010421-86010440 | Msa1085350:CDS | 60.0% | |
| TGAGGAGGACCCTGGATGGA+AGG | - | chr7_2:86010434-86010453 | None:intergenic | 60.0% | |
| ATGCTGAGGAGGACCCTGGA+TGG | - | chr7_2:86010438-86010457 | None:intergenic | 60.0% | |
| GGCCCCGTGCAAGTGCAACA+AGG | - | chr7_2:86007575-86007594 | None:intergenic | 65.0% | |
| CCTGATGCTGAGGAGGACCC+TGG | - | chr7_2:86010442-86010461 | None:intergenic | 65.0% | |
| CCAGGGTCCTCCTCAGCATC+AGG | + | chr7_2:86010439-86010458 | Msa1085350:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 86006818 | 86010619 | 86006818 | ID=Msa1085350;Name=Msa1085350 |
| chr7_2 | mRNA | 86006818 | 86010619 | 86006818 | ID=Msa1085350-mRNA-1;Parent=Msa1085350;Name=Msa1085350-mRNA-1;_AED=0.06;_eAED=0.06;_QI=113|1|1|1|0.66|0.75|4|78|202 |
| chr7_2 | exon | 86006818 | 86006945 | 86006818 | ID=Msa1085350-mRNA-1:exon:23242;Parent=Msa1085350-mRNA-1 |
| chr7_2 | exon | 86009184 | 86009447 | 86009184 | ID=Msa1085350-mRNA-1:exon:23243;Parent=Msa1085350-mRNA-1 |
| chr7_2 | exon | 86010107 | 86010253 | 86010107 | ID=Msa1085350-mRNA-1:exon:23244;Parent=Msa1085350-mRNA-1 |
| chr7_2 | exon | 86010359 | 86010619 | 86010359 | ID=Msa1085350-mRNA-1:exon:23245;Parent=Msa1085350-mRNA-1 |
| chr7_2 | five_prime_UTR | 86006818 | 86006930 | 86006818 | ID=Msa1085350-mRNA-1:five_prime_utr;Parent=Msa1085350-mRNA-1 |
| chr7_2 | CDS | 86006931 | 86006945 | 86006931 | ID=Msa1085350-mRNA-1:cds;Parent=Msa1085350-mRNA-1 |
| chr7_2 | CDS | 86009184 | 86009447 | 86009184 | ID=Msa1085350-mRNA-1:cds;Parent=Msa1085350-mRNA-1 |
| chr7_2 | CDS | 86010107 | 86010253 | 86010107 | ID=Msa1085350-mRNA-1:cds;Parent=Msa1085350-mRNA-1 |
| chr7_2 | CDS | 86010359 | 86010541 | 86010359 | ID=Msa1085350-mRNA-1:cds;Parent=Msa1085350-mRNA-1 |
| chr7_2 | three_prime_UTR | 86010542 | 86010619 | 86010542 | ID=Msa1085350-mRNA-1:three_prime_utr;Parent=Msa1085350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
