Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748370 | XP_013456630.1 | 76.987 | 239 | 47 | 3 | 12 | 247 | 104 | 337 | 5.99e-125 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748370 | sp|Q9FNY2|DPB_ARATH | 70.681 | 191 | 48 | 3 | 12 | 199 | 111 | 296 | 3.94e-89 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748370 | A0A072UMP7 | 76.987 | 239 | 47 | 3 | 12 | 247 | 104 | 337 | 2.86e-125 | 370 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0748370 | TF | E2F-DP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0748370 | Msa1165620 | 0.889478 | 2.337937e-73 | -8.615850e-47 |
| Msa0748370 | Msa1362190 | 0.918071 | 2.448647e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748370 | MtrunA17_Chr4g0039751 | 76.987 | 239 | 47 | 3 | 12 | 247 | 104 | 337 | 5.51e-129 | 370 |
| Msa0748370 | MtrunA17_Chr4g0039741 | 69.710 | 241 | 63 | 4 | 12 | 247 | 100 | 335 | 1.60e-116 | 338 |
| Msa0748370 | MtrunA17_Chr7g0269651 | 93.496 | 123 | 8 | 0 | 169 | 291 | 1 | 123 | 1.58e-73 | 243 |
| Msa0748370 | MtrunA17_Chr7g0269641 | 88.496 | 113 | 13 | 0 | 12 | 124 | 80 | 192 | 3.32e-65 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748370 | AT5G03415.2 | 71.354 | 192 | 47 | 3 | 11 | 199 | 104 | 290 | 3.61e-91 | 276 |
| Msa0748370 | AT5G03415.1 | 70.681 | 191 | 48 | 3 | 12 | 199 | 111 | 296 | 4.00e-90 | 273 |
| Msa0748370 | AT5G02470.3 | 43.915 | 189 | 95 | 5 | 11 | 194 | 60 | 242 | 2.12e-51 | 171 |
| Msa0748370 | AT5G02470.1 | 43.915 | 189 | 95 | 5 | 11 | 194 | 60 | 242 | 2.12e-51 | 171 |
| Msa0748370 | AT5G02470.2 | 43.915 | 189 | 95 | 5 | 11 | 194 | 60 | 242 | 2.12e-51 | 171 |
Find 82 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTGTAGCTTATTGATTT+AGG | 0.131004 | 5_2:+1532311 | Msa0748370:five_prime_UTR |
| CAGGCATCACCTCCGCTTTC+TGG | 0.140961 | 5_2:+1535494 | Msa0748370:CDS |
| TCAATTTCCACATGACATTT+TGG | 0.179498 | 5_2:-1536343 | None:intergenic |
| AATGAAAAGGACAATGATTT+TGG | 0.189333 | 5_2:-1532373 | None:intergenic |
| GTCAGGCTTGCATCAGTTGC+AGG | 0.260541 | 5_2:+1535436 | Msa0748370:CDS |
| TATTATTTCCAAGGATAAAA+AGG | 0.267147 | 5_2:+1533929 | Msa0748370:CDS |
| AACTGTAGCTTATTGATTTA+GGG | 0.280597 | 5_2:+1532312 | Msa0748370:five_prime_UTR |
| ATCTGATTCAAGAGCAGTTT+TGG | 0.287261 | 5_2:-1532433 | None:intergenic |
| TATTATTGCATCAAGTTTGT+AGG | 0.312560 | 5_2:+1534344 | Msa0748370:intron |
| CAGTTTCAAGCGTGTCAATT+AGG | 0.323437 | 5_2:+1535468 | Msa0748370:CDS |
| CTTGTTCCTCAAGCTCCTTT+AGG | 0.331825 | 5_2:-1534171 | None:intergenic |
| GTTGGAGAAGGTAGAAAGTA+AGG | 0.363432 | 5_2:+1533314 | Msa0748370:CDS |
| TCCGCTTTCTGGAATACTTA+AGG | 0.378685 | 5_2:+1535505 | Msa0748370:CDS |
| GTCGGCTCGCTCCGGCTAGA+TGG | 0.379241 | 5_2:-1532564 | None:intergenic |
| TTGTTGCGAAAGTCGATAGA+TGG | 0.385930 | 5_2:+1532484 | Msa0748370:five_prime_UTR |
| GGGGAAGGTTCTAGCTTGTC+AGG | 0.408012 | 5_2:+1535419 | Msa0748370:CDS |
| GGGGACAAAACACTATTCAT+TGG | 0.417434 | 5_2:-1533723 | None:intergenic |
| TCAAAATAGTCCTAAACCTT+AGG | 0.426376 | 5_2:+1532273 | Msa0748370:five_prime_UTR |
| TGTTTGTTAGGAAAGCTAAC+TGG | 0.430033 | 5_2:+1536193 | Msa0748370:intron |
| AAAGATAAATCTCCGCTTGA+AGG | 0.440338 | 5_2:-1534416 | None:intergenic |
| GAGAACATTCAGAACATCAT+AGG | 0.447978 | 5_2:-1533895 | None:intergenic |
| AATGAGCAATTATATAGATC+AGG | 0.460541 | 5_2:+1534389 | Msa0748370:CDS |
| AAGCGTGTCAATTAGGCCTC+AGG | 0.469004 | 5_2:+1535475 | Msa0748370:CDS |
| CTAAAAGTTAAGTGTGGGGT+TGG | 0.482389 | 5_2:+1532152 | None:intergenic |
| TAGTGCTATTGAGAAGCTAA+AGG | 0.482438 | 5_2:+1533977 | Msa0748370:CDS |
| GCAGCGGCTGTCTGCGTCGT+CGG | 0.497935 | 5_2:-1532582 | None:intergenic |
| GCAAACTAAAAGTTAAGTGT+GGG | 0.499822 | 5_2:+1532147 | None:intergenic |
| GAAAGTCGATAGATGGAAGA+TGG | 0.500686 | 5_2:+1532491 | Msa0748370:five_prime_UTR |
| TGTACCTGAACCAGAACAAA+AGG | 0.501925 | 5_2:-1534440 | None:intergenic |
| CTATGGTGCACAAAATGAAA+AGG | 0.506225 | 5_2:-1532386 | None:intergenic |
| GGCAATGGATATTATTTCCA+AGG | 0.507516 | 5_2:+1533920 | Msa0748370:CDS |
| ATTCAACAGATCGAATGTCT+AGG | 0.511456 | 5_2:+1534115 | Msa0748370:intron |
| TGCAACTGTTGAACTTGAAG+TGG | 0.513525 | 5_2:+1534987 | Msa0748370:CDS |
| TTCAACAGATCGAATGTCTA+GGG | 0.521141 | 5_2:+1534116 | Msa0748370:intron |
| CATCATCATGTATGTCAAGA+TGG | 0.522280 | 5_2:-1532617 | None:intergenic |
| GAATGACACACAGTTTCCCT+TGG | 0.532011 | 5_2:+1536381 | Msa0748370:CDS |
| ACTTACCATTGCTGTAATGA+TGG | 0.533611 | 5_2:-1536228 | None:intergenic |
| CGCAAACTAAAAGTTAAGTG+TGG | 0.533862 | 5_2:+1532146 | None:intergenic |
| ACACTCAATGTTACGGAAGG+AGG | 0.535766 | 5_2:+1535398 | Msa0748370:CDS |
| TATTGCTACACTCAATGTTA+CGG | 0.535816 | 5_2:+1535391 | Msa0748370:CDS |
| AAGCAAAGTATCCTACCTAA+AGG | 0.541642 | 5_2:+1534156 | Msa0748370:CDS |
| CACTCAATGTTACGGAAGGA+GGG | 0.556476 | 5_2:+1535399 | Msa0748370:CDS |
| ATCCTACCTAAAGGAGCTTG+AGG | 0.557921 | 5_2:+1534165 | Msa0748370:CDS |
| TTGGAGAAGGTAGAAAGTAA+GGG | 0.559901 | 5_2:+1533315 | Msa0748370:CDS |
| AAAGTCGATAGATGGAAGAT+GGG | 0.561763 | 5_2:+1532492 | Msa0748370:five_prime_UTR |
| ATTGCTCATTTCGTTGAACA+AGG | 0.562679 | 5_2:-1534376 | None:intergenic |
| ACCTTAAGTATTCCAGAAAG+CGG | 0.563806 | 5_2:-1535506 | None:intergenic |
| AATCATGTGTAGATGAAAGC+AGG | 0.569304 | 5_2:+1532529 | Msa0748370:five_prime_UTR |
| GAACATCATAGGCCCTTCGA+CGG | 0.570623 | 5_2:-1533884 | None:intergenic |
| TGATGTTCTGAATGTTCTCA+TGG | 0.572407 | 5_2:+1533899 | Msa0748370:CDS |
| TTTAGCTTCTCAATAGCACT+AGG | 0.575236 | 5_2:-1533975 | None:intergenic |
| CGAAGGAAGAAATAATGCTA+TGG | 0.580934 | 5_2:-1532403 | None:intergenic |
| GACATACATGATGATGATGC+AGG | 0.583166 | 5_2:+1532624 | Msa0748370:exon |
| TTCAGATCCAAAATGTCATG+TGG | 0.587452 | 5_2:+1536336 | Msa0748370:intron |
| CTACTATGTGCTCAAAGCAA+TGG | 0.590968 | 5_2:+1535343 | Msa0748370:CDS |
| GATGATGATGCAGGATCACA+AGG | 0.593414 | 5_2:+1532633 | Msa0748370:CDS |
| AACGTATTCAGAATTCTCCA+AGG | 0.597884 | 5_2:-1536398 | None:intergenic |
| TACAACCATCATTACAGCAA+TGG | 0.598226 | 5_2:+1536223 | Msa0748370:CDS |
| GTAGATGAAAGCAGGAGTGC+TGG | 0.600296 | 5_2:+1532537 | Msa0748370:five_prime_UTR |
| GTTGTATGCAGTGTTGGAGA+AGG | 0.602504 | 5_2:+1533302 | Msa0748370:intron |
| AATGTTACGGAAGGAGGGGA+AGG | 0.604293 | 5_2:+1535404 | Msa0748370:CDS |
| TCTGAATGTTCTCATGGCAA+TGG | 0.604838 | 5_2:+1533905 | Msa0748370:CDS |
| ACCTTAGGAAAAGTTAGAAG+AGG | 0.610254 | 5_2:+1532288 | Msa0748370:five_prime_UTR |
| TTCCTCAAGCTCCTTTAGGT+AGG | 0.612657 | 5_2:-1534167 | None:intergenic |
| ATGGTTTAATTTGAGAGCAG+CGG | 0.613032 | 5_2:-1532598 | None:intergenic |
| AGCTTCTCAATAGCACTAGG+AGG | 0.614094 | 5_2:-1533972 | None:intergenic |
| CTAGGTGGCAGATGAACTTG+TGG | 0.615812 | 5_2:+1533686 | Msa0748370:intron |
| ACTCAATGTTACGGAAGGAG+GGG | 0.616617 | 5_2:+1535400 | Msa0748370:CDS |
| GGGAAGAACAACTTTCAATG+AGG | 0.618421 | 5_2:+1533335 | Msa0748370:CDS |
| ACGTATTCAGAATTCTCCAA+GGG | 0.620753 | 5_2:-1536397 | None:intergenic |
| GGAAGATGGGAACGCGACTG+CGG | 0.633565 | 5_2:+1532505 | Msa0748370:five_prime_UTR |
| ATTGACACGCTTGAAACTGA+AGG | 0.637612 | 5_2:-1535464 | None:intergenic |
| AGATCAGGAAATCCTTCAAG+CGG | 0.637885 | 5_2:+1534404 | Msa0748370:CDS |
| GCTACACTCAATGTTACGGA+AGG | 0.641637 | 5_2:+1535395 | Msa0748370:CDS |
| GGAAATTGATAGTCTTGCTA+AGG | 0.641726 | 5_2:+1536357 | Msa0748370:CDS |
| TTAAGTAACTCGATATAGTG+AGG | 0.647838 | 5_2:+1532240 | Msa0748370:five_prime_UTR |
| CAAACTAAAAGTTAAGTGTG+GGG | 0.655209 | 5_2:+1532148 | None:intergenic |
| TCAAGTTCAACAGTTGCATG+AGG | 0.655545 | 5_2:-1534982 | None:intergenic |
| GAAAGCGGAGGTGATGCCTG+AGG | 0.658645 | 5_2:-1535491 | None:intergenic |
| GACACGCTTGAAACTGAAGG+AGG | 0.686824 | 5_2:-1535461 | None:intergenic |
| TTAAGTATTCCAGAAAGCGG+AGG | 0.697488 | 5_2:-1535503 | None:intergenic |
| AGTGTAGCAATATCTCTCCG+AGG | 0.743133 | 5_2:-1535380 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTGAATGATAAAAAA+AGG | - | chr5_2:1532466-1532485 | None:intergenic | 10.0% |
| !! | AGTACAATATTATTAATATT+TGG | - | chr5_2:1532873-1532892 | None:intergenic | 10.0% |
| !!! | TTTATTGCTATTAAACTTTT+GGG | + | chr5_2:1532724-1532743 | Msa0748370:intron | 15.0% |
| !! | AATAATAAGAATTATGAAAG+AGG | - | chr5_2:1533618-1533637 | None:intergenic | 15.0% |
| !!! | ATGTGTTATTTTTATATTCT+AGG | + | chr5_2:1533668-1533687 | Msa0748370:intron | 15.0% |
| !!! | ATATCATTTTTTCTTGTTTA+GGG | + | chr5_2:1535565-1535584 | Msa0748370:intron | 15.0% |
| !! | ATCTAATAAATATGTTTGTT+AGG | + | chr5_2:1536181-1536200 | Msa0748370:intron | 15.0% |
| !!! | GTTTATTGCTATTAAACTTT+TGG | + | chr5_2:1532723-1532742 | Msa0748370:intron | 20.0% |
| !! | TTATTCAGTTACTTATTTCA+GGG | + | chr5_2:1532775-1532794 | Msa0748370:intron | 20.0% |
| !! | ATAAGTTCTTAATAAGTCAA+CGG | + | chr5_2:1532923-1532942 | Msa0748370:intron | 20.0% |
| !! | AAAAATCAAAGAAAGACTTT+AGG | - | chr5_2:1533065-1533084 | None:intergenic | 20.0% |
| !! | CTGAATAAAAAATTAGTTGA+AGG | - | chr5_2:1533527-1533546 | None:intergenic | 20.0% |
| !!! | CTTCAACTAATTTTTTATTC+AGG | + | chr5_2:1533525-1533544 | Msa0748370:intron | 20.0% |
| !! | TCAAAGTCAAGAAATATATT+AGG | - | chr5_2:1533649-1533668 | None:intergenic | 20.0% |
| !!! | TGTTATTTTTATATTCTAGG+TGG | + | chr5_2:1533671-1533690 | Msa0748370:intron | 20.0% |
| !!! | AATTTTGAAACTGTTTGTAA+AGG | - | chr5_2:1533765-1533784 | None:intergenic | 20.0% |
| !!! | TACTGTAGATTTACTTTTTT+GGG | + | chr5_2:1533819-1533838 | Msa0748370:intron | 20.0% |
| !! | TATTATTTCCAAGGATAAAA+AGG | + | chr5_2:1533929-1533948 | Msa0748370:CDS | 20.0% |
| !! | TTAATCCTAAAATACAATCA+AGG | + | chr5_2:1534073-1534092 | Msa0748370:intron | 20.0% |
| !! | TGAATAAAACTGAGTTAAAA+TGG | - | chr5_2:1534100-1534119 | None:intergenic | 20.0% |
| !! | CACTCTAATAGATTTAATAT+GGG | + | chr5_2:1534205-1534224 | Msa0748370:intron | 20.0% |
| !! | ACTCTAATAGATTTAATATG+GGG | + | chr5_2:1534206-1534225 | Msa0748370:intron | 20.0% |
| !!! | TTCTGAAAAAATAGCAAAAA+AGG | - | chr5_2:1534482-1534501 | None:intergenic | 20.0% |
| !! | GTGTGATAATTAGATTATAT+TGG | + | chr5_2:1534538-1534557 | Msa0748370:intron | 20.0% |
| !! | AAAACATATGCTTAATTAGT+TGG | + | chr5_2:1534575-1534594 | Msa0748370:intron | 20.0% |
| !! | AGAGGAAAAAAAATATTTCT+AGG | - | chr5_2:1534665-1534684 | None:intergenic | 20.0% |
| !! | TTGAGCTTATATAAATCTAA+AGG | - | chr5_2:1534800-1534819 | None:intergenic | 20.0% |
| !!! | TTGTTCATTTTGATTTCAAT+AGG | + | chr5_2:1535040-1535059 | Msa0748370:CDS | 20.0% |
| !!! | GATATCATTTTTTCTTGTTT+AGG | + | chr5_2:1535564-1535583 | Msa0748370:intron | 20.0% |
| !! | AAAAGTCATAGCAAAATATA+TGG | - | chr5_2:1535653-1535672 | None:intergenic | 20.0% |
| !!! | GAAATTAATCCTATTTTTGT+TGG | - | chr5_2:1535710-1535729 | None:intergenic | 20.0% |
| !! | AATAGGATTAATTTCAGAAT+TGG | + | chr5_2:1535715-1535734 | Msa0748370:intron | 20.0% |
| !! | TTGTCTTGTATTATTTACTA+CGG | + | chr5_2:1535757-1535776 | Msa0748370:intron | 20.0% |
| !! | ATGACATTCAAAAGAAAATT+GGG | - | chr5_2:1535831-1535850 | None:intergenic | 20.0% |
| !! | ATTTACCTGTAATTTCTATA+GGG | + | chr5_2:1535865-1535884 | Msa0748370:intron | 20.0% |
| !!! | CATGAACTTAGTTTTCATAT+AGG | - | chr5_2:1532218-1532237 | None:intergenic | 25.0% |
| !!! | AAACTGTAGCTTATTGATTT+AGG | + | chr5_2:1532311-1532330 | Msa0748370:five_prime_UTR | 25.0% |
| !!! | AACTGTAGCTTATTGATTTA+GGG | + | chr5_2:1532312-1532331 | Msa0748370:five_prime_UTR | 25.0% |
| !! | AATGAAAAGGACAATGATTT+TGG | - | chr5_2:1532376-1532395 | None:intergenic | 25.0% |
| ! | TACATTTATTAGAAGCTGAA+AGG | - | chr5_2:1532684-1532703 | None:intergenic | 25.0% |
| ! | CTTATTCAGTTACTTATTTC+AGG | + | chr5_2:1532774-1532793 | Msa0748370:intron | 25.0% |
| !! | CTTTCATTCATGAACTATTT+TGG | + | chr5_2:1532810-1532829 | Msa0748370:intron | 25.0% |
| !!! | CATGAACTATTTTGGAAAAA+CGG | + | chr5_2:1532818-1532837 | Msa0748370:intron | 25.0% |
| ! | AGAAAAAATAAGAGTAGAAG+AGG | + | chr5_2:1533170-1533189 | Msa0748370:intron | 25.0% |
| ! | GAAAAAATAAGAGTAGAAGA+GGG | + | chr5_2:1533171-1533190 | Msa0748370:intron | 25.0% |
| ! | AAAACCTTTCATGCTAATTT+GGG | - | chr5_2:1533201-1533220 | None:intergenic | 25.0% |
| ! | AAAAACCTTTCATGCTAATT+TGG | - | chr5_2:1533202-1533221 | None:intergenic | 25.0% |
| ! | TGAACAGTATGTAACAAAAT+TGG | - | chr5_2:1533241-1533260 | None:intergenic | 25.0% |
| !!! | TTCATTGACTTTTTTCTTTC+TGG | + | chr5_2:1533257-1533276 | Msa0748370:intron | 25.0% |
| !!! | ATTTTTTATTCAGGAACTTG+TGG | + | chr5_2:1533534-1533553 | Msa0748370:intron | 25.0% |
| ! | AAGGAAAAACAACCTTATTA+GGG | - | chr5_2:1533746-1533765 | None:intergenic | 25.0% |
| ! | AAAGGAAAAACAACCTTATT+AGG | - | chr5_2:1533747-1533766 | None:intergenic | 25.0% |
| !!! | GTACTGTAGATTTACTTTTT+TGG | + | chr5_2:1533818-1533837 | Msa0748370:intron | 25.0% |
| !!! | ACTGTAGATTTACTTTTTTG+GGG | + | chr5_2:1533820-1533839 | Msa0748370:intron | 25.0% |
| !! | TTGTATTTCCTTTTTATCCT+TGG | - | chr5_2:1533940-1533959 | None:intergenic | 25.0% |
| ! | AGGATAAAAAGGAAATACAA+TGG | + | chr5_2:1533940-1533959 | Msa0748370:CDS | 25.0% |
| ! | TAAAAAGGAAATACAATGGA+AGG | + | chr5_2:1533944-1533963 | Msa0748370:CDS | 25.0% |
| ! | AAAAAGGAAATACAATGGAA+GGG | + | chr5_2:1533945-1533964 | Msa0748370:CDS | 25.0% |
| ! | TTAAATCTATTAGAGTGGAA+TGG | - | chr5_2:1534202-1534221 | None:intergenic | 25.0% |
| ! | CCATATTAAATCTATTAGAG+TGG | - | chr5_2:1534207-1534226 | None:intergenic | 25.0% |
| ! | CCACTCTAATAGATTTAATA+TGG | + | chr5_2:1534204-1534223 | Msa0748370:intron | 25.0% |
| ! | TATTATTGCATCAAGTTTGT+AGG | + | chr5_2:1534344-1534363 | Msa0748370:intron | 25.0% |
| ! | AATGAGCAATTATATAGATC+AGG | + | chr5_2:1534389-1534408 | Msa0748370:CDS | 25.0% |
| !! | TTTATCTTTACCTTTTGTTC+TGG | + | chr5_2:1534430-1534449 | Msa0748370:CDS | 25.0% |
| ! | AAAAAGGTAGATAATGATGA+TGG | - | chr5_2:1534466-1534485 | None:intergenic | 25.0% |
| !! | AATGTTGTTCAATTTTACCT+TGG | + | chr5_2:1534505-1534524 | Msa0748370:intron | 25.0% |
| !! | CTAATTAAGCATATGTTTTG+TGG | - | chr5_2:1534574-1534593 | None:intergenic | 25.0% |
| !!! | ATATTTTTTTTCCTCTTCTG+TGG | + | chr5_2:1534669-1534688 | Msa0748370:intron | 25.0% |
| ! | ACACTACTTGATACTTAATT+AGG | - | chr5_2:1535119-1535138 | None:intergenic | 25.0% |
| !!! | TTAAGAAAGTACTTGATGAA+TGG | - | chr5_2:1535614-1535633 | None:intergenic | 25.0% |
| ! | GATTAATTTCAGAATTGGTT+AGG | + | chr5_2:1535720-1535739 | Msa0748370:intron | 25.0% |
| ! | GATGACATTCAAAAGAAAAT+TGG | - | chr5_2:1535832-1535851 | None:intergenic | 25.0% |
| ! | GATTTACCTGTAATTTCTAT+AGG | + | chr5_2:1535864-1535883 | Msa0748370:intron | 25.0% |
| ! | AAAAAATGACACTAATCCTT+GGG | + | chr5_2:1536028-1536047 | Msa0748370:intron | 25.0% |
| !!! | ACAATGTTGAAAATTTTAGC+TGG | - | chr5_2:1536138-1536157 | None:intergenic | 25.0% |
| !!! | ATTTACAGTTTTATTGGTGA+CGG | - | chr5_2:1536306-1536325 | None:intergenic | 25.0% |
| !!! | GCAATCATTTACAGTTTTAT+TGG | - | chr5_2:1536312-1536331 | None:intergenic | 25.0% |
| TTAAGTAACTCGATATAGTG+AGG | + | chr5_2:1532240-1532259 | Msa0748370:five_prime_UTR | 30.0% | |
| TCAAAATAGTCCTAAACCTT+AGG | + | chr5_2:1532273-1532292 | Msa0748370:five_prime_UTR | 30.0% | |
| ! | TCTAACTTTTCCTAAGGTTT+AGG | - | chr5_2:1532286-1532305 | None:intergenic | 30.0% |
| ACAATCATACAATTGACACT+AGG | - | chr5_2:1533028-1533047 | None:intergenic | 30.0% | |
| TAGTGTCAATTGTATGATTG+TGG | + | chr5_2:1533027-1533046 | Msa0748370:intron | 30.0% | |
| AGTGTCAATTGTATGATTGT+GGG | + | chr5_2:1533028-1533047 | Msa0748370:intron | 30.0% | |
| AAACCTTTCATGCTAATTTG+GGG | - | chr5_2:1533200-1533219 | None:intergenic | 30.0% | |
| GTAACAAAATTGGTCAAACA+AGG | - | chr5_2:1533231-1533250 | None:intergenic | 30.0% | |
| TACAACCAGCAATAAATTAG+AGG | - | chr5_2:1533288-1533307 | None:intergenic | 30.0% | |
| AGGAAAAACAACCTTATTAG+GGG | - | chr5_2:1533745-1533764 | None:intergenic | 30.0% | |
| !!! | CTGTAGATTTACTTTTTTGG+GGG | + | chr5_2:1533821-1533840 | Msa0748370:intron | 30.0% |
| !!! | TGTAGATTTACTTTTTTGGG+GGG | + | chr5_2:1533822-1533841 | Msa0748370:intron | 30.0% |
| AAGTTACAACTTGAGATTGT+GGG | - | chr5_2:1534007-1534026 | None:intergenic | 30.0% | |
| AAAGTTACAACTTGAGATTG+TGG | - | chr5_2:1534008-1534027 | None:intergenic | 30.0% | |
| ! | ATGGTCCTTGATTGTATTTT+AGG | - | chr5_2:1534081-1534100 | None:intergenic | 30.0% |
| TGCAAACACTATAAAATGGA+AGG | + | chr5_2:1534732-1534751 | Msa0748370:intron | 30.0% | |
| ATAAGCTCAATGCTATGTTA+TGG | + | chr5_2:1534810-1534829 | Msa0748370:intron | 30.0% | |
| AAGCTTCAATTTCCTTATCT+AGG | + | chr5_2:1535065-1535084 | Msa0748370:intron | 30.0% | |
| GTGTCATAAAATCAAGAAAG+TGG | + | chr5_2:1535135-1535154 | Msa0748370:intron | 30.0% | |
| GAGCTAGTTAATCCTATTTA+AGG | + | chr5_2:1535157-1535176 | Msa0748370:intron | 30.0% | |
| ! | TCTCTACTTGAAAACTCTTT+TGG | - | chr5_2:1535197-1535216 | None:intergenic | 30.0% |
| !!! | TTTTCAAGTAGAGAAGTTCT+GGG | + | chr5_2:1535203-1535222 | Msa0748370:intron | 30.0% |
| TATTGCTACACTCAATGTTA+CGG | + | chr5_2:1535391-1535410 | Msa0748370:CDS | 30.0% | |
| ATGATATCACTTACTACAAC+GGG | - | chr5_2:1535677-1535696 | None:intergenic | 30.0% | |
| CATGATATCACTTACTACAA+CGG | - | chr5_2:1535678-1535697 | None:intergenic | 30.0% | |
| AAATGCCCTATAGAAATTAC+AGG | - | chr5_2:1535873-1535892 | None:intergenic | 30.0% | |
| !! | TGTTGCAATTGTTGTTTGTT+TGG | + | chr5_2:1535925-1535944 | Msa0748370:intron | 30.0% |
| AATCCTCATCTTAATTCTCA+TGG | + | chr5_2:1536002-1536021 | Msa0748370:intron | 30.0% | |
| GAAAAAATGACACTAATCCT+TGG | + | chr5_2:1536027-1536046 | Msa0748370:intron | 30.0% | |
| ! | CTGATATCGTTAGTTCTTTA+GGG | + | chr5_2:1536071-1536090 | Msa0748370:intron | 30.0% |
| ! | TCAATTTCCACATGACATTT+TGG | - | chr5_2:1536346-1536365 | None:intergenic | 30.0% |
| ACCTTAGGAAAAGTTAGAAG+AGG | + | chr5_2:1532288-1532307 | Msa0748370:five_prime_UTR | 35.0% | |
| ! | TCCTCTTCTAACTTTTCCTA+AGG | - | chr5_2:1532292-1532311 | None:intergenic | 35.0% |
| CTATGGTGCACAAAATGAAA+AGG | - | chr5_2:1532389-1532408 | None:intergenic | 35.0% | |
| CGAAGGAAGAAATAATGCTA+TGG | - | chr5_2:1532406-1532425 | None:intergenic | 35.0% | |
| ! | ATCTGATTCAAGAGCAGTTT+TGG | - | chr5_2:1532436-1532455 | None:intergenic | 35.0% |
| AAAGTCGATAGATGGAAGAT+GGG | + | chr5_2:1532492-1532511 | Msa0748370:five_prime_UTR | 35.0% | |
| AATCATGTGTAGATGAAAGC+AGG | + | chr5_2:1532529-1532548 | Msa0748370:five_prime_UTR | 35.0% | |
| !! | ATGGTTTAATTTGAGAGCAG+CGG | - | chr5_2:1532601-1532620 | None:intergenic | 35.0% |
| CATCATCATGTATGTCAAGA+TGG | - | chr5_2:1532620-1532639 | None:intergenic | 35.0% | |
| AGAAGCTGAAAGGATTAGAT+AGG | - | chr5_2:1532674-1532693 | None:intergenic | 35.0% | |
| ATGCATAACCAATTCAGAGA+AGG | - | chr5_2:1533000-1533019 | None:intergenic | 35.0% | |
| ACAGTAGCAAGAAGAAAAAG+AGG | + | chr5_2:1533129-1533148 | Msa0748370:intron | 35.0% | |
| CAGTAGCAAGAAGAAAAAGA+GGG | + | chr5_2:1533130-1533149 | Msa0748370:intron | 35.0% | |
| AGTAGCAAGAAGAAAAAGAG+GGG | + | chr5_2:1533131-1533150 | Msa0748370:intron | 35.0% | |
| AACCTTTCATGCTAATTTGG+GGG | - | chr5_2:1533199-1533218 | None:intergenic | 35.0% | |
| TTCTGCCTCTAATTTATTGC+TGG | + | chr5_2:1533280-1533299 | Msa0748370:intron | 35.0% | |
| TTGGAGAAGGTAGAAAGTAA+GGG | + | chr5_2:1533315-1533334 | Msa0748370:CDS | 35.0% | |
| GAACAACTTTCAATGAGGTT+AGG | + | chr5_2:1533340-1533359 | Msa0748370:intron | 35.0% | |
| ! | TAGTGTTTTGTCCCCTAATA+AGG | + | chr5_2:1533731-1533750 | Msa0748370:CDS | 35.0% |
| GAGAACATTCAGAACATCAT+AGG | - | chr5_2:1533898-1533917 | None:intergenic | 35.0% | |
| ! | TGATGTTCTGAATGTTCTCA+TGG | + | chr5_2:1533899-1533918 | Msa0748370:CDS | 35.0% |
| GGCAATGGATATTATTTCCA+AGG | + | chr5_2:1533920-1533939 | Msa0748370:CDS | 35.0% | |
| ! | TTTAGCTTCTCAATAGCACT+AGG | - | chr5_2:1533978-1533997 | None:intergenic | 35.0% |
| ! | TAGTGCTATTGAGAAGCTAA+AGG | + | chr5_2:1533977-1533996 | Msa0748370:CDS | 35.0% |
| TTAATTCAGAACATCACTGC+AGG | - | chr5_2:1534057-1534076 | None:intergenic | 35.0% | |
| ATTCAACAGATCGAATGTCT+AGG | + | chr5_2:1534115-1534134 | Msa0748370:intron | 35.0% | |
| TTCAACAGATCGAATGTCTA+GGG | + | chr5_2:1534116-1534135 | Msa0748370:intron | 35.0% | |
| ! | AAGCAAAGTATCCTACCTAA+AGG | + | chr5_2:1534156-1534175 | Msa0748370:CDS | 35.0% |
| AAACACAAGACACTACAGAA+AGG | - | chr5_2:1534301-1534320 | None:intergenic | 35.0% | |
| ATTGCTCATTTCGTTGAACA+AGG | - | chr5_2:1534379-1534398 | None:intergenic | 35.0% | |
| AAAGATAAATCTCCGCTTGA+AGG | - | chr5_2:1534419-1534438 | None:intergenic | 35.0% | |
| !!! | TTTACCTTTTGTTCTGGTTC+AGG | + | chr5_2:1534436-1534455 | Msa0748370:CDS | 35.0% |
| ATCACACAATTGAAGATCCA+AGG | - | chr5_2:1534525-1534544 | None:intergenic | 35.0% | |
| CAGCTGCAAACACTATAAAA+TGG | + | chr5_2:1534728-1534747 | Msa0748370:intron | 35.0% | |
| GCTATGTTATGGAGAATTCT+TGG | + | chr5_2:1534821-1534840 | Msa0748370:intron | 35.0% | |
| !! | TAGAAACTTTTTCCGATCTG+TGG | - | chr5_2:1534847-1534866 | None:intergenic | 35.0% |
| !! | ACAAAATCTGTTTTTCCTGC+TGG | + | chr5_2:1534883-1534902 | Msa0748370:intron | 35.0% |
| ACAGTATACAGACCTAGATA+AGG | - | chr5_2:1535080-1535099 | None:intergenic | 35.0% | |
| ! | CTACTTGAAAACTCTTTTGG+TGG | - | chr5_2:1535194-1535213 | None:intergenic | 35.0% |
| !!! | GTTTTCAAGTAGAGAAGTTC+TGG | + | chr5_2:1535202-1535221 | Msa0748370:intron | 35.0% |
| ! | TGGAATTTTGTGATAGACCT+CGG | + | chr5_2:1535363-1535382 | Msa0748370:CDS | 35.0% |
| ACCTTAAGTATTCCAGAAAG+CGG | - | chr5_2:1535509-1535528 | None:intergenic | 35.0% | |
| !! | GAAAGTACTTGATGAATGGT+AGG | - | chr5_2:1535610-1535629 | None:intergenic | 35.0% |
| TGATATCACTTACTACAACG+GGG | - | chr5_2:1535676-1535695 | None:intergenic | 35.0% | |
| CGTTGTAGTAAGTGATATCA+TGG | + | chr5_2:1535676-1535695 | Msa0748370:intron | 35.0% | |
| TAGTAAGTGATATCATGGAC+TGG | + | chr5_2:1535681-1535700 | Msa0748370:intron | 35.0% | |
| GTGTTCTATCACAACTTTGA+TGG | + | chr5_2:1535796-1535815 | Msa0748370:intron | 35.0% | |
| GCGAAATTCAACAATGTTTC+TGG | + | chr5_2:1535970-1535989 | Msa0748370:intron | 35.0% | |
| CTTCCATGAGAATTAAGATG+AGG | - | chr5_2:1536008-1536027 | None:intergenic | 35.0% | |
| TTTGTCATTCTCAATTCCCA+AGG | - | chr5_2:1536047-1536066 | None:intergenic | 35.0% | |
| ! | GCTGATATCGTTAGTTCTTT+AGG | + | chr5_2:1536070-1536089 | Msa0748370:intron | 35.0% |
| ! | TGTTTGTTAGGAAAGCTAAC+TGG | + | chr5_2:1536193-1536212 | Msa0748370:intron | 35.0% |
| TACAACCATCATTACAGCAA+TGG | + | chr5_2:1536223-1536242 | Msa0748370:CDS | 35.0% | |
| ACTTACCATTGCTGTAATGA+TGG | - | chr5_2:1536231-1536250 | None:intergenic | 35.0% | |
| TTACAGCAATGGTAAGTCTT+TGG | + | chr5_2:1536234-1536253 | Msa0748370:intron | 35.0% | |
| TTCAGATCCAAAATGTCATG+TGG | + | chr5_2:1536336-1536355 | Msa0748370:intron | 35.0% | |
| ! | GGAAATTGATAGTCTTGCTA+AGG | + | chr5_2:1536357-1536376 | Msa0748370:CDS | 35.0% |
| ACGTATTCAGAATTCTCCAA+GGG | - | chr5_2:1536400-1536419 | None:intergenic | 35.0% | |
| AACGTATTCAGAATTCTCCA+AGG | - | chr5_2:1536401-1536420 | None:intergenic | 35.0% | |
| !! | AAGGACAATGATTTTGGCAG+AGG | - | chr5_2:1532370-1532389 | None:intergenic | 40.0% |
| TTGTTGCGAAAGTCGATAGA+TGG | + | chr5_2:1532484-1532503 | Msa0748370:five_prime_UTR | 40.0% | |
| GAAAGTCGATAGATGGAAGA+TGG | + | chr5_2:1532491-1532510 | Msa0748370:five_prime_UTR | 40.0% | |
| ! | GACATACATGATGATGATGC+AGG | + | chr5_2:1532624-1532643 | Msa0748370:exon | 40.0% |
| !! | TTTTTCTAGCATCCCGTTGT+TGG | - | chr5_2:1533157-1533176 | None:intergenic | 40.0% |
| GTTGGAGAAGGTAGAAAGTA+AGG | + | chr5_2:1533314-1533333 | Msa0748370:CDS | 40.0% | |
| GGGAAGAACAACTTTCAATG+AGG | + | chr5_2:1533335-1533354 | Msa0748370:CDS | 40.0% | |
| CAACTTTCAATGAGGTTAGG+TGG | + | chr5_2:1533343-1533362 | Msa0748370:intron | 40.0% | |
| TCTCTTGCTTCAGTTTCATG+TGG | + | chr5_2:1533399-1533418 | Msa0748370:intron | 40.0% | |
| GGGGACAAAACACTATTCAT+TGG | - | chr5_2:1533726-1533745 | None:intergenic | 40.0% | |
| TCTGAATGTTCTCATGGCAA+TGG | + | chr5_2:1533905-1533924 | Msa0748370:CDS | 40.0% | |
| !!! | GTAACTTTTTTTCCCCCATG+TGG | + | chr5_2:1534020-1534039 | Msa0748370:intron | 40.0% |
| AGGTAAAGCTTAAGCCACAT+GGG | - | chr5_2:1534037-1534056 | None:intergenic | 40.0% | |
| TGCTGCACTTGATTACAAGA+AGG | + | chr5_2:1534256-1534275 | Msa0748370:intron | 40.0% | |
| AAGGAAGCGATATGTTAGTC+AGG | - | chr5_2:1534282-1534301 | None:intergenic | 40.0% | |
| AGATCAGGAAATCCTTCAAG+CGG | + | chr5_2:1534404-1534423 | Msa0748370:CDS | 40.0% | |
| TGTACCTGAACCAGAACAAA+AGG | - | chr5_2:1534443-1534462 | None:intergenic | 40.0% | |
| ! | GCATATGTTTTGTGGTGAGT+TGG | - | chr5_2:1534566-1534585 | None:intergenic | 40.0% |
| CTAGGAATTAACAAAGCAGC+TGG | - | chr5_2:1534647-1534666 | None:intergenic | 40.0% | |
| TCAAGTTCAACAGTTGCATG+AGG | - | chr5_2:1534985-1535004 | None:intergenic | 40.0% | |
| TGCAACTGTTGAACTTGAAG+TGG | + | chr5_2:1534987-1535006 | Msa0748370:CDS | 40.0% | |
| CTACTATGTGCTCAAAGCAA+TGG | + | chr5_2:1535343-1535362 | Msa0748370:CDS | 40.0% | |
| ATTGACACGCTTGAAACTGA+AGG | - | chr5_2:1535467-1535486 | None:intergenic | 40.0% | |
| CAGTTTCAAGCGTGTCAATT+AGG | + | chr5_2:1535468-1535487 | Msa0748370:CDS | 40.0% | |
| TTAAGTATTCCAGAAAGCGG+AGG | - | chr5_2:1535506-1535525 | None:intergenic | 40.0% | |
| !! | TCCGCTTTCTGGAATACTTA+AGG | + | chr5_2:1535505-1535524 | Msa0748370:CDS | 40.0% |
| ACTTGATGAATGGTAGGCAA+AGG | - | chr5_2:1535604-1535623 | None:intergenic | 40.0% | |
| GACTGGAGTCCAACAAAAAT+AGG | + | chr5_2:1535698-1535717 | Msa0748370:intron | 40.0% | |
| TGTTGAATTTCGCATGCTCA+AGG | - | chr5_2:1535963-1535982 | None:intergenic | 40.0% | |
| !!! | TACGTTTTAACTGCTGCAAC+TGG | + | chr5_2:1536415-1536434 | Msa0748370:CDS | 40.0% |
| ! | GATGATGATGCAGGATCACA+AGG | + | chr5_2:1532633-1532652 | Msa0748370:CDS | 45.0% |
| CGTCTTCTCCTTCTCTGAAT+TGG | + | chr5_2:1532989-1533008 | Msa0748370:intron | 45.0% | |
| AAAATCGATCCGCACCAACT+CGG | + | chr5_2:1533099-1533118 | Msa0748370:intron | 45.0% | |
| AGAAAAAGAGGGGCCAACAA+CGG | + | chr5_2:1533141-1533160 | Msa0748370:intron | 45.0% | |
| CTCCCCCAAATTAGCATGAA+AGG | + | chr5_2:1533194-1533213 | Msa0748370:intron | 45.0% | |
| ! | TTGCTGGTTGTATGCAGTGT+TGG | + | chr5_2:1533296-1533315 | Msa0748370:intron | 45.0% |
| ! | GTTGTATGCAGTGTTGGAGA+AGG | + | chr5_2:1533302-1533321 | Msa0748370:intron | 45.0% |
| ATGAGAAAAACGTCCGTCGA+AGG | + | chr5_2:1533871-1533890 | Msa0748370:CDS | 45.0% | |
| TGAGAAAAACGTCCGTCGAA+GGG | + | chr5_2:1533872-1533891 | Msa0748370:CDS | 45.0% | |
| AGCTTCTCAATAGCACTAGG+AGG | - | chr5_2:1533975-1533994 | None:intergenic | 45.0% | |
| GTAAAGCTTAAGCCACATGG+GGG | - | chr5_2:1534035-1534054 | None:intergenic | 45.0% | |
| GGTAAAGCTTAAGCCACATG+GGG | - | chr5_2:1534036-1534055 | None:intergenic | 45.0% | |
| CAGGTAAAGCTTAAGCCACA+TGG | - | chr5_2:1534038-1534057 | None:intergenic | 45.0% | |
| ATCCTACCTAAAGGAGCTTG+AGG | + | chr5_2:1534165-1534184 | Msa0748370:CDS | 45.0% | |
| TTCCTCAAGCTCCTTTAGGT+AGG | - | chr5_2:1534170-1534189 | None:intergenic | 45.0% | |
| CTTGTTCCTCAAGCTCCTTT+AGG | - | chr5_2:1534174-1534193 | None:intergenic | 45.0% | |
| GTAATCAAGTGCAGCAAACC+AGG | - | chr5_2:1534252-1534271 | None:intergenic | 45.0% | |
| CAAACGAATGTCCACAGAAG+AGG | - | chr5_2:1534683-1534702 | None:intergenic | 45.0% | |
| GAGAATTCTTGGCCACAGAT+CGG | + | chr5_2:1534832-1534851 | Msa0748370:intron | 45.0% | |
| TCCTGCTGGATGCTTTAATG+TGG | + | chr5_2:1534897-1534916 | Msa0748370:intron | 45.0% | |
| ! | ACCACATTAAAGCATCCAGC+AGG | - | chr5_2:1534901-1534920 | None:intergenic | 45.0% |
| !! | GTCTCTGCTTGGCCTTAAAT+AGG | - | chr5_2:1535172-1535191 | None:intergenic | 45.0% |
| !! | TCAAGTAGAGAAGTTCTGGG+AGG | + | chr5_2:1535206-1535225 | Msa0748370:intron | 45.0% |
| ! | TGATGCTTTTGTCCCTGTGT+TGG | + | chr5_2:1535243-1535262 | Msa0748370:intron | 45.0% |
| ! | GATGCTTTTGTCCCTGTGTT+GGG | + | chr5_2:1535244-1535263 | Msa0748370:intron | 45.0% |
| CAGTTACATCTCCCAACACA+GGG | - | chr5_2:1535258-1535277 | None:intergenic | 45.0% | |
| ACAGTTACATCTCCCAACAC+AGG | - | chr5_2:1535259-1535278 | None:intergenic | 45.0% | |
| !! | AGAGTACTGCAGAGAGAGAA+GGG | - | chr5_2:1535305-1535324 | None:intergenic | 45.0% |
| !! | AAGAGTACTGCAGAGAGAGA+AGG | - | chr5_2:1535306-1535325 | None:intergenic | 45.0% |
| AGTGTAGCAATATCTCTCCG+AGG | - | chr5_2:1535383-1535402 | None:intergenic | 45.0% | |
| GCTACACTCAATGTTACGGA+AGG | + | chr5_2:1535395-1535414 | Msa0748370:CDS | 45.0% | |
| ACACTCAATGTTACGGAAGG+AGG | + | chr5_2:1535398-1535417 | Msa0748370:CDS | 45.0% | |
| CACTCAATGTTACGGAAGGA+GGG | + | chr5_2:1535399-1535418 | Msa0748370:CDS | 45.0% | |
| ACTCAATGTTACGGAAGGAG+GGG | + | chr5_2:1535400-1535419 | Msa0748370:CDS | 45.0% | |
| TGACGGTGATACTTTGTCAG+GGG | - | chr5_2:1536289-1536308 | None:intergenic | 45.0% | |
| GTGACGGTGATACTTTGTCA+GGG | - | chr5_2:1536290-1536309 | None:intergenic | 45.0% | |
| GAATGACACACAGTTTCCCT+TGG | + | chr5_2:1536381-1536400 | Msa0748370:CDS | 45.0% | |
| !!! | GCAGTTTTGGTTTCGAGCGA+AGG | - | chr5_2:1532423-1532442 | None:intergenic | 50.0% |
| ! | GTAGATGAAAGCAGGAGTGC+TGG | + | chr5_2:1532537-1532556 | Msa0748370:five_prime_UTR | 50.0% |
| !!! | GTGCTGGTTTTCCATCTAGC+CGG | + | chr5_2:1532553-1532572 | Msa0748370:five_prime_UTR | 50.0% |
| GAAGGAGAAGACGAAGACGA+AGG | - | chr5_2:1532982-1533001 | None:intergenic | 50.0% | |
| CTACTGTGTAGACACCGAGT+TGG | - | chr5_2:1533116-1533135 | None:intergenic | 50.0% | |
| GAAAAAGAGGGGCCAACAAC+GGG | + | chr5_2:1533142-1533161 | Msa0748370:intron | 50.0% | |
| CTAGGTGGCAGATGAACTTG+TGG | + | chr5_2:1533686-1533705 | Msa0748370:intron | 50.0% | |
| GAACATCATAGGCCCTTCGA+CGG | - | chr5_2:1533887-1533906 | None:intergenic | 50.0% | |
| !! | CTCTTTTGGTGGTCTCTGCT+TGG | - | chr5_2:1535183-1535202 | None:intergenic | 50.0% |
| !!! | GAAGTTCTGGGAGGCAGTTT+TGG | + | chr5_2:1535215-1535234 | Msa0748370:intron | 50.0% |
| AATGTTACGGAAGGAGGGGA+AGG | + | chr5_2:1535404-1535423 | Msa0748370:CDS | 50.0% | |
| GACACGCTTGAAACTGAAGG+AGG | - | chr5_2:1535464-1535483 | None:intergenic | 50.0% | |
| AAGCGTGTCAATTAGGCCTC+AGG | + | chr5_2:1535475-1535494 | Msa0748370:CDS | 50.0% | |
| ! | GGTGACGGTGATACTTTGTC+AGG | - | chr5_2:1536291-1536310 | None:intergenic | 50.0% |
| !! | GTGTAGACACCGAGTTGGTG+CGG | - | chr5_2:1533111-1533130 | None:intergenic | 55.0% |
| AAGTGCAGCAAACCAGGTCC+AGG | - | chr5_2:1534246-1534265 | None:intergenic | 55.0% | |
| !!! | GTTCTGGGAGGCAGTTTTGG+TGG | + | chr5_2:1535218-1535237 | Msa0748370:intron | 55.0% |
| !! | GGGGAAGGTTCTAGCTTGTC+AGG | + | chr5_2:1535419-1535438 | Msa0748370:CDS | 55.0% |
| GTCAGGCTTGCATCAGTTGC+AGG | + | chr5_2:1535436-1535455 | Msa0748370:CDS | 55.0% | |
| GGAAGATGGGAACGCGACTG+CGG | + | chr5_2:1532505-1532524 | Msa0748370:five_prime_UTR | 60.0% | |
| GGGGATGATGTCCTCAGTCC+TGG | + | chr5_2:1534225-1534244 | Msa0748370:intron | 60.0% | |
| GATGTCCTCAGTCCTGGACC+TGG | + | chr5_2:1534231-1534250 | Msa0748370:intron | 60.0% | |
| GCAAACCAGGTCCAGGACTG+AGG | - | chr5_2:1534239-1534258 | None:intergenic | 60.0% | |
| GAAAGCGGAGGTGATGCCTG+AGG | - | chr5_2:1535494-1535513 | None:intergenic | 60.0% | |
| CAGGCATCACCTCCGCTTTC+TGG | + | chr5_2:1535494-1535513 | Msa0748370:CDS | 60.0% | |
| !! | GTCGGCTCGCTCCGGCTAGA+TGG | - | chr5_2:1532567-1532586 | None:intergenic | 70.0% |
| !! | TCTGCGTCGTCGGCTCGCTC+CGG | - | chr5_2:1532575-1532594 | None:intergenic | 70.0% |
| GCAGCGGCTGTCTGCGTCGT+CGG | - | chr5_2:1532585-1532604 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 1532153 | 1536438 | 1532153 | ID=Msa0748370;Name=Msa0748370 |
| chr5_2 | mRNA | 1532153 | 1536438 | 1532153 | ID=Msa0748370-mRNA-1;Parent=Msa0748370;Name=Msa0748370-mRNA-1;_AED=0.07;_eAED=0.07;_QI=478|1|0.9|1|0.88|1|10|0|292 |
| chr5_2 | exon | 1532153 | 1532664 | 1532153 | ID=Msa0748370-mRNA-1:exon:425;Parent=Msa0748370-mRNA-1 |
| chr5_2 | exon | 1533313 | 1533356 | 1533313 | ID=Msa0748370-mRNA-1:exon:426;Parent=Msa0748370-mRNA-1 |
| chr5_2 | exon | 1533690 | 1533752 | 1533690 | ID=Msa0748370-mRNA-1:exon:427;Parent=Msa0748370-mRNA-1 |
| chr5_2 | exon | 1533861 | 1533998 | 1533861 | ID=Msa0748370-mRNA-1:exon:428;Parent=Msa0748370-mRNA-1 |
| chr5_2 | exon | 1534124 | 1534192 | 1534124 | ID=Msa0748370-mRNA-1:exon:429;Parent=Msa0748370-mRNA-1 |
| chr5_2 | exon | 1534359 | 1534457 | 1534359 | ID=Msa0748370-mRNA-1:exon:430;Parent=Msa0748370-mRNA-1 |
| chr5_2 | exon | 1534976 | 1535061 | 1534976 | ID=Msa0748370-mRNA-1:exon:431;Parent=Msa0748370-mRNA-1 |
| chr5_2 | exon | 1535319 | 1535526 | 1535319 | ID=Msa0748370-mRNA-1:exon:432;Parent=Msa0748370-mRNA-1 |
| chr5_2 | exon | 1536208 | 1536244 | 1536208 | ID=Msa0748370-mRNA-1:exon:433;Parent=Msa0748370-mRNA-1 |
| chr5_2 | exon | 1536341 | 1536438 | 1536341 | ID=Msa0748370-mRNA-1:exon:434;Parent=Msa0748370-mRNA-1 |
| chr5_2 | five_prime_UTR | 1532153 | 1532630 | 1532153 | ID=Msa0748370-mRNA-1:five_prime_utr;Parent=Msa0748370-mRNA-1 |
| chr5_2 | CDS | 1532631 | 1532664 | 1532631 | ID=Msa0748370-mRNA-1:cds;Parent=Msa0748370-mRNA-1 |
| chr5_2 | CDS | 1533313 | 1533356 | 1533313 | ID=Msa0748370-mRNA-1:cds;Parent=Msa0748370-mRNA-1 |
| chr5_2 | CDS | 1533690 | 1533752 | 1533690 | ID=Msa0748370-mRNA-1:cds;Parent=Msa0748370-mRNA-1 |
| chr5_2 | CDS | 1533861 | 1533998 | 1533861 | ID=Msa0748370-mRNA-1:cds;Parent=Msa0748370-mRNA-1 |
| chr5_2 | CDS | 1534124 | 1534192 | 1534124 | ID=Msa0748370-mRNA-1:cds;Parent=Msa0748370-mRNA-1 |
| chr5_2 | CDS | 1534359 | 1534457 | 1534359 | ID=Msa0748370-mRNA-1:cds;Parent=Msa0748370-mRNA-1 |
| chr5_2 | CDS | 1534976 | 1535061 | 1534976 | ID=Msa0748370-mRNA-1:cds;Parent=Msa0748370-mRNA-1 |
| chr5_2 | CDS | 1535319 | 1535526 | 1535319 | ID=Msa0748370-mRNA-1:cds;Parent=Msa0748370-mRNA-1 |
| chr5_2 | CDS | 1536208 | 1536244 | 1536208 | ID=Msa0748370-mRNA-1:cds;Parent=Msa0748370-mRNA-1 |
| chr5_2 | CDS | 1536341 | 1536438 | 1536341 | ID=Msa0748370-mRNA-1:cds;Parent=Msa0748370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
