AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0749750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0749750 MtrunA17_Chr5g0396371 99.482 193 1 0 1 193 1 193 1.75e-142 394
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0749750 AT1G51510.1 64.246 179 54 6 9 178 7 184 1.22e-73 221
Msa0749750 AT5G64200.2 32.353 102 68 1 79 180 5 105 2.75e-11 61.6
Msa0749750 AT5G64200.1 32.353 102 68 1 79 180 5 105 2.75e-11 61.6

Find 75 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAAGTCTATTATGGTTTA+TGG 0.120038 5_2:-3256081 Msa0749750:three_prime_UTR
CACAAACCATTTATGTTGAT+TGG 0.221624 5_2:-3258126 Msa0749750:CDS
TATTAACTCAAAGTCTATTA+TGG 0.252809 5_2:-3256088 Msa0749750:three_prime_UTR
TATTGAAGGATGGATTATTT+TGG 0.283878 5_2:-3260520 Msa0749750:CDS
AACTCTCGTCTCGCTGATTC+CGG 0.283971 5_2:-3260678 Msa0749750:CDS
GAGGAAGATAGTATCTCTTT+TGG 0.289491 5_2:-3255982 Msa0749750:three_prime_UTR
GAAAGCCCAATCAACATAAA+TGG 0.296555 5_2:+3258120 None:intergenic
CGCCGCCGACGGAGAAGCTT+TGG 0.306556 5_2:-3260856 Msa0749750:CDS
TAATTCAAACGAATTAGAAT+TGG 0.316131 5_2:-3260952 Msa0749750:five_prime_UTR
AGTGATGGCGGATTTGAGTT+TGG 0.318147 5_2:+3260761 None:intergenic
GGTAGTTCAATTCAACCTAT+AGG 0.325115 5_2:+3260925 None:intergenic
GATGATTTGCAGAATGCTTT+TGG 0.361063 5_2:-3260468 Msa0749750:CDS
GTGATGGCGGATTTGAGTTT+GGG 0.363430 5_2:+3260762 None:intergenic
CTGACGGAAACCGCGACCTT+TGG 0.364553 5_2:+3260722 None:intergenic
GTAGTTCAATTCAACCTATA+GGG 0.373316 5_2:+3260926 None:intergenic
CTTCTAACTGACTCATTGAT+AGG 0.375297 5_2:+3258088 None:intergenic
ACAAACCATTTATGTTGATT+GGG 0.381801 5_2:-3258125 Msa0749750:CDS
GCAGACCTCAGCGGCGCTCC+AGG 0.401643 5_2:-3256303 Msa0749750:intron
GAGAGGAGTGAGTGTATGAA+GGG 0.420705 5_2:+3260904 None:intergenic
CTCACTGCTGAGGGTGGTCC+TGG 0.420911 5_2:-3260645 Msa0749750:CDS
ATTAGAATTGGGAACCCTAT+AGG 0.424830 5_2:-3260940 Msa0749750:five_prime_UTR
AATTCAAACGAATTAGAATT+GGG 0.426378 5_2:-3260951 Msa0749750:five_prime_UTR
AGAGAGGAGTGAGTGTATGA+AGG 0.429108 5_2:+3260903 None:intergenic
GCCAGAGGAAGATGACTTGA+TGG 0.429124 5_2:-3260826 Msa0749750:CDS
ATGAGTCAGTTAGAAGAAAC+AGG 0.431891 5_2:-3258081 Msa0749750:intron
GAGACGAGAGTTACGGTTAG+AGG 0.454033 5_2:+3260689 None:intergenic
GCGGATTTGAGTTTGGGATG+TGG 0.456064 5_2:+3260768 None:intergenic
CAAAGGTCGCGGTTTCCGTC+AGG 0.458944 5_2:-3260721 Msa0749750:CDS
GGATTGCGTCTTGTGTGTGA+TGG 0.470406 5_2:-3255961 Msa0749750:three_prime_UTR
TTGAATCTTGATCGCCGTAC+TGG 0.470728 5_2:-3260417 Msa0749750:CDS
TCTCCTCCTAGGAGGACTCC+TGG 0.475841 5_2:+3256285 None:intergenic
GATTTCTATTTGTCCAGTTG+TGG 0.476460 5_2:-3256199 Msa0749750:three_prime_UTR
AGAGTTACGGTTAGAGGAAT+CGG 0.477329 5_2:+3260695 None:intergenic
TCCATCAAGTCATCTTCCTC+TGG 0.480725 5_2:+3260825 None:intergenic
CCGTCAGACAAAATACATAT+CGG 0.482615 5_2:-3256149 Msa0749750:three_prime_UTR
GTTGATTGGGCTTTCAGCAG+TGG 0.486700 5_2:-3258112 Msa0749750:CDS
CTCTATTCAGCGACGATGCA+AGG 0.487696 5_2:-3260882 Msa0749750:exon
AATGCAATAGAGAATTTGAA+TGG 0.500993 5_2:-3258163 Msa0749750:CDS
TGTATTGTATTGTATTTACA+TGG 0.506811 5_2:-3255839 Msa0749750:three_prime_UTR
TGGGGATACAAACATCTTTG+AGG 0.509393 5_2:+3260621 None:intergenic
CCCTTTCAATATCTCCTCCT+AGG 0.518724 5_2:+3256274 None:intergenic
GGGATGTGGAGGAGAAGCTT+CGG 0.519462 5_2:+3260782 None:intergenic
GATTGCGTCTTGTGTGTGAT+GGG 0.524426 5_2:-3255960 Msa0749750:three_prime_UTR
AGCAGTGAGAGTATCGAAAC+CGG 0.528470 5_2:+3260659 None:intergenic
TTCGATACTCTCACTGCTGA+GGG 0.535196 5_2:-3260654 Msa0749750:CDS
ATGCAAGGAAGCGCCGCCGA+CGG 0.548735 5_2:-3260867 Msa0749750:CDS
TCCTAGGAGGAGATATTGAA+AGG 0.548743 5_2:-3256275 Msa0749750:exon
GGCGCTCCAGGAGTCCTCCT+AGG 0.551753 5_2:-3256291 Msa0749750:CDS
TACAAACATCTTTGAGGACC+AGG 0.553987 5_2:+3260627 None:intergenic
GGACTCCTGGAGCGCCGCTG+AGG 0.554772 5_2:+3256298 None:intergenic
AAAATACATATCGGTTGTTG+AGG 0.562247 5_2:-3256140 Msa0749750:three_prime_UTR
ATGAGCGCTCTGAGGAAGCT+CGG 0.562915 5_2:-3258186 Msa0749750:CDS
AATCAGCGAGACGAGAGTTA+CGG 0.563114 5_2:+3260682 None:intergenic
GATGACTTGATGGACGAAGA+AGG 0.572561 5_2:-3260816 Msa0749750:CDS
GATTTGAGTTTGGGATGTGG+AGG 0.573507 5_2:+3260771 None:intergenic
ATACAATACAATACAATACA+TGG 0.578585 5_2:+3255857 None:intergenic
AGCTTTGGATTTCGAGCCAG+AGG 0.579650 5_2:-3260841 Msa0749750:CDS
GACGGAAGCTGCATAAGTAT+AGG 0.580468 5_2:+3256167 None:intergenic
ATCCAAAGCTTCTCCGTCGG+CGG 0.583085 5_2:+3260854 None:intergenic
CCTAGGAGGAGATATTGAAA+GGG 0.586913 5_2:-3256274 Msa0749750:exon
TTTCGATACTCTCACTGCTG+AGG 0.590321 5_2:-3260655 Msa0749750:CDS
TTTGGGAACGGAAGTGATGG+CGG 0.614347 5_2:+3260749 None:intergenic
GCTCCAGGAGTCCTCCTAGG+AGG 0.642226 5_2:-3256288 Msa0749750:CDS
TTTCAATATCTCCTCCTAGG+AGG 0.646524 5_2:+3256277 None:intergenic
GATACTCTCACTGCTGAGGG+TGG 0.647746 5_2:-3260651 Msa0749750:CDS
TATACATGATGTCAGTTGTG+TGG 0.649704 5_2:-3256240 Msa0749750:three_prime_UTR
CATCGTCGCTGAATAGAGAG+AGG 0.655964 5_2:+3260887 None:intergenic
GCACCTTAACAAAACCAGTA+CGG 0.658816 5_2:+3260403 None:intergenic
TTTGGTGACTGGTGTACATG+AGG 0.661358 5_2:-3260502 Msa0749750:CDS
TAGAGGAATCGGAATCCTGA+CGG 0.677725 5_2:+3260706 None:intergenic
GATTGAATATGAGCGCTCTG+AGG 0.688874 5_2:-3258194 Msa0749750:CDS
CAATACAATACAATACATGG+TGG 0.700385 5_2:+3255860 None:intergenic
GAAATCCAAAGCTTCTCCGT+CGG 0.701772 5_2:+3260851 None:intergenic
TATGTAATGACATTGTGTTG+AGG 0.711007 5_2:-3256001 Msa0749750:three_prime_UTR
TTGTGTGGAACTTAAATGAG+CGG 0.731925 5_2:-3256225 Msa0749750:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTTAATAAAATAAGATA+AGG + chr5_2:3258404-3258423 None:intergenic 10.0%
!!! TATCTTATTTTATTAAGAAA+AGG - chr5_2:3258404-3258423 Msa0749750:intron 10.0%
!! AATTGACAAAAATTGAAATT+GGG + chr5_2:3256277-3256296 None:intergenic 15.0%
!! AAATTGACAAAAATTGAAAT+TGG + chr5_2:3256278-3256297 None:intergenic 15.0%
!!! TACTTTTCATTCTTAAATTA+TGG - chr5_2:3256715-3256734 Msa0749750:intron 15.0%
!! TTTGAAAAAAAAAAAAAGGA+AGG - chr5_2:3257180-3257199 Msa0749750:intron 15.0%
!!! AATTTAATTTTATGATAGAG+AGG - chr5_2:3259853-3259872 Msa0749750:intron 15.0%
!! TAATACAAAAAATAAGCAAT+TGG - chr5_2:3259938-3259957 Msa0749750:intron 15.0%
!! AAACTATGAAAAGTTTATAA+GGG + chr5_2:3260522-3260541 None:intergenic 15.0%
!! TAAACTATGAAAAGTTTATA+AGG + chr5_2:3260523-3260542 None:intergenic 15.0%
!! TAATTCAAACGAATTAGAAT+TGG - chr5_2:3255924-3255943 Msa0749750:three_prime_UTR 20.0%
!! AATTCAAACGAATTAGAATT+GGG - chr5_2:3255925-3255944 Msa0749750:three_prime_UTR 20.0%
!! ATTGACAAAAATTGAAATTG+GGG + chr5_2:3256276-3256295 None:intergenic 20.0%
!! AAGAAGAAAAAAAAAAAGGA+AGG + chr5_2:3257076-3257095 None:intergenic 20.0%
!! TTGGAAGAAGAAAAAAAAAA+AGG + chr5_2:3257080-3257099 None:intergenic 20.0%
!! TTGAGAAATATATGGAAAAA+TGG + chr5_2:3257384-3257403 None:intergenic 20.0%
!! TTTATAGACAGTGTATATTA+CGG + chr5_2:3257574-3257593 None:intergenic 20.0%
!! TTTGAAAAAAAAATACTGCA+GGG + chr5_2:3258202-3258221 None:intergenic 20.0%
!! ATTTGAAAAAAAAATACTGC+AGG + chr5_2:3258203-3258222 None:intergenic 20.0%
!!! AATGCAGTTTTGATTTTTAA+AGG - chr5_2:3258248-3258267 Msa0749750:intron 20.0%
!!! TACTTGTAATTTTGTAAACA+GGG - chr5_2:3258446-3258465 Msa0749750:intron 20.0%
!!! TGATAAGCATTTTGATTTTA+GGG - chr5_2:3258650-3258669 Msa0749750:intron 20.0%
!!! AAGAAACAGGTAATTTATTT+TGG - chr5_2:3258808-3258827 Msa0749750:intron 20.0%
!!! TTGGTTTTATATTTATCTAC+AGG - chr5_2:3258827-3258846 Msa0749750:intron 20.0%
!!! TGGTTTTATATTTATCTACA+GGG - chr5_2:3258828-3258847 Msa0749750:intron 20.0%
!! TTTACATCATTTATTTGAGT+TGG - chr5_2:3258910-3258929 Msa0749750:intron 20.0%
!!! GCAAAAATAAATTTTACAGT+TGG + chr5_2:3259387-3259406 None:intergenic 20.0%
!! ATATATATAAAATGTGCAGT+AGG + chr5_2:3259448-3259467 None:intergenic 20.0%
!! AAAAAATAAGCAATTGGAAA+GGG - chr5_2:3259944-3259963 Msa0749750:intron 20.0%
!!! TTCTTTTCAATTTTGTGAAT+CGG + chr5_2:3260020-3260039 None:intergenic 20.0%
!! ATATATAATTCTCTTCTTTG+TGG - chr5_2:3260277-3260296 Msa0749750:intron 20.0%
!! AAGTTATTTAACGATAATCT+AGG + chr5_2:3260335-3260354 None:intergenic 20.0%
!! AACTATGAAAAGTTTATAAG+GGG + chr5_2:3260521-3260540 None:intergenic 20.0%
!! TATTAACTCAAAGTCTATTA+TGG - chr5_2:3260788-3260807 Msa0749750:CDS 20.0%
!! ATACAATACAATACAATACA+TGG + chr5_2:3261022-3261041 None:intergenic 20.0%
!! TGTATTGTATTGTATTTACA+TGG - chr5_2:3261037-3261056 Msa0749750:five_prime_UTR 20.0%
!!! AATTGCGTGATTTTGATTTT+AGG - chr5_2:3256298-3256317 Msa0749750:CDS 25.0%
!!! ATTGCGTGATTTTGATTTTA+GGG - chr5_2:3256299-3256318 Msa0749750:CDS 25.0%
!!! TATTGAAGGATGGATTATTT+TGG - chr5_2:3256356-3256375 Msa0749750:intron 25.0%
!!! GTATAGATTGACTAGTTTTA+TGG - chr5_2:3256573-3256592 Msa0749750:intron 25.0%
!! TTTGAAGTAGGAAATGTATA+TGG - chr5_2:3256631-3256650 Msa0749750:intron 25.0%
! GTGTATTAATCTATGTTGTT+GGG + chr5_2:3256863-3256882 None:intergenic 25.0%
! AGTGTATTAATCTATGTTGT+TGG + chr5_2:3256864-3256883 None:intergenic 25.0%
! AAACAAAACCCTCATAATTT+GGG + chr5_2:3256989-3257008 None:intergenic 25.0%
! AAAACAAAACCCTCATAATT+TGG + chr5_2:3256990-3257009 None:intergenic 25.0%
!!! GGGCTTTGAAAAAAAAAAAA+AGG - chr5_2:3257176-3257195 Msa0749750:intron 25.0%
! TTACCATTAATCAATCACTT+AGG + chr5_2:3257421-3257440 None:intergenic 25.0%
! CAGAAGGTTAACAATAAAAA+AGG + chr5_2:3257459-3257478 None:intergenic 25.0%
!!! CTTTTTTATTGTTAACCTTC+TGG - chr5_2:3257457-3257476 Msa0749750:intron 25.0%
!! TGAATCAGAAGATCTATTTT+CGG - chr5_2:3257529-3257548 Msa0749750:intron 25.0%
! TCATGACTTGAATTATTTGA+AGG + chr5_2:3257662-3257681 None:intergenic 25.0%
! AATTCAAGTCATGAATCAAA+TGG - chr5_2:3257668-3257687 Msa0749750:intron 25.0%
! GTGTATCATTGTATCTATAT+GGG + chr5_2:3257814-3257833 None:intergenic 25.0%
! TGTGTATCATTGTATCTATA+TGG + chr5_2:3257815-3257834 None:intergenic 25.0%
!!! TTGATTTTTAAAGGATGTAG+TGG - chr5_2:3258257-3258276 Msa0749750:intron 25.0%
!! CTACTTGTAATTTTGTAAAC+AGG - chr5_2:3258445-3258464 Msa0749750:intron 25.0%
! ATGATGTATGAACATAGAAA+CGG + chr5_2:3258505-3258524 None:intergenic 25.0%
! CTAAATAAAGTTACAGGAAA+AGG + chr5_2:3258572-3258591 None:intergenic 25.0%
! AAGTTGCTAAATAAAGTTAC+AGG + chr5_2:3258578-3258597 None:intergenic 25.0%
! CAAATCTTCACATGATAAAA+TGG + chr5_2:3258620-3258639 None:intergenic 25.0%
!! CATTTTATCATGTGAAGATT+TGG - chr5_2:3258618-3258637 Msa0749750:intron 25.0%
!!! CTGATAAGCATTTTGATTTT+AGG - chr5_2:3258649-3258668 Msa0749750:intron 25.0%
! AATGCAATAGAGAATTTGAA+TGG - chr5_2:3258713-3258732 Msa0749750:intron 25.0%
!! ACAAACCATTTATGTTGATT+GGG - chr5_2:3258751-3258770 Msa0749750:intron 25.0%
! TGTGATAACAAATCATAATG+TGG + chr5_2:3259000-3259019 None:intergenic 25.0%
! AAATTCCATAGTAAGAAAAG+TGG + chr5_2:3259133-3259152 None:intergenic 25.0%
!! GTTTTTCCACGTTTAAAAAT+TGG - chr5_2:3259725-3259744 Msa0749750:intron 25.0%
!! TATGTTCCAATTTTTAAACG+TGG + chr5_2:3259734-3259753 None:intergenic 25.0%
!! GAATGTTTTCATAGTTACTT+TGG + chr5_2:3259772-3259791 None:intergenic 25.0%
! CAAAAAATAAGCAATTGGAA+AGG - chr5_2:3259943-3259962 Msa0749750:intron 25.0%
! AACCATTGGATCATAATATA+CGG + chr5_2:3260164-3260183 None:intergenic 25.0%
! TGGATTGAAAAATGAAGATA+TGG - chr5_2:3260301-3260320 Msa0749750:intron 25.0%
! AATCCATACATACAATGAAA+CGG + chr5_2:3260376-3260395 None:intergenic 25.0%
! TAGTTTAGCATTTGAATGTT+TGG - chr5_2:3260536-3260555 Msa0749750:intron 25.0%
! TCAAAGTCTATTATGGTTTA+TGG - chr5_2:3260795-3260814 Msa0749750:CDS 25.0%
GTAGTTCAATTCAACCTATA+GGG + chr5_2:3255953-3255972 None:intergenic 30.0%
! TTTTTGTAGCTATTGAAGGA+TGG - chr5_2:3256346-3256365 Msa0749750:intron 30.0%
!!! GATAGAAAGTGTTTTGAAGT+AGG - chr5_2:3256619-3256638 Msa0749750:intron 30.0%
AAGTAGGAAATGTATATGGA+CGG - chr5_2:3256635-3256654 Msa0749750:intron 30.0%
! TAATCTAAGGGTATGATTGT+AGG - chr5_2:3256665-3256684 Msa0749750:intron 30.0%
! AATCTAAGGGTATGATTGTA+GGG - chr5_2:3256666-3256685 Msa0749750:intron 30.0%
ATTAATCTATGTTGTTGGGA+GGG + chr5_2:3256859-3256878 None:intergenic 30.0%
TATTAATCTATGTTGTTGGG+AGG + chr5_2:3256860-3256879 None:intergenic 30.0%
AGAACTCAAAATTGTATTCG+AGG + chr5_2:3256965-3256984 None:intergenic 30.0%
AACAAAACCCTCATAATTTG+GGG + chr5_2:3256988-3257007 None:intergenic 30.0%
TGGATGAAATAGAAGACATT+GGG - chr5_2:3257209-3257228 Msa0749750:intron 30.0%
AATACAAAATCTCCCTCATT+TGG - chr5_2:3257265-3257284 Msa0749750:intron 30.0%
ATACAAAATCTCCCTCATTT+GGG - chr5_2:3257266-3257285 Msa0749750:intron 30.0%
TTGGGAGTTTGAGAAATATA+TGG + chr5_2:3257392-3257411 None:intergenic 30.0%
AAGCCTAAGTGATTGATTAA+TGG - chr5_2:3257415-3257434 Msa0749750:intron 30.0%
! AAAATTTGATAACCATGCTC+CGG + chr5_2:3257510-3257529 None:intergenic 30.0%
CGATTCTCATTTCATTCTAA+TGG + chr5_2:3257758-3257777 None:intergenic 30.0%
!! TGAGAATCGTTTTAGTGAAT+TGG - chr5_2:3257769-3257788 Msa0749750:intron 30.0%
!! GAGAATCGTTTTAGTGAATT+GGG - chr5_2:3257770-3257789 Msa0749750:intron 30.0%
TGAGATGATAACTTCAGTTA+AGG + chr5_2:3258006-3258025 None:intergenic 30.0%
CACAAACCATTTATGTTGAT+TGG - chr5_2:3258750-3258769 Msa0749750:intron 30.0%
! AACAAAGTTCCATGAAGTTT+TGG - chr5_2:3258880-3258899 Msa0749750:intron 30.0%
CAATGACTTGACTATAAACA+TGG + chr5_2:3259026-3259045 None:intergenic 30.0%
CATGTTTATAGTCAAGTCAT+TGG - chr5_2:3259024-3259043 Msa0749750:intron 30.0%
TATTTGCCAATAGTGTTTGT+TGG - chr5_2:3259066-3259085 Msa0749750:intron 30.0%
AGAAAAGTGGATGAGATAAA+AGG + chr5_2:3259120-3259139 None:intergenic 30.0%
! ATTCAACTACATAACTTGTG+TGG - chr5_2:3259358-3259377 Msa0749750:intron 30.0%
! GTTTTACAAACTTTCAAGAG+TGG + chr5_2:3259421-3259440 None:intergenic 30.0%
AACCGTTGGATCAAAATATA+CGG - chr5_2:3259533-3259552 Msa0749750:intron 30.0%
AGATTAGAGTCCAATTAGAA+AGG - chr5_2:3259559-3259578 Msa0749750:intron 30.0%
TTCTGATTATTTAGATTCGC+AGG + chr5_2:3259664-3259683 None:intergenic 30.0%
GATGATTGATGTAAAGTTTG+AGG - chr5_2:3259881-3259900 Msa0749750:intron 30.0%
!! GTGTTCGGATTTAAGTTTTA+TGG + chr5_2:3259998-3260017 None:intergenic 30.0%
GAGGATATAATATGAACCAT+TGG + chr5_2:3260178-3260197 None:intergenic 30.0%
ATAATTCTCTTCTTTGTGGA+TGG - chr5_2:3260281-3260300 Msa0749750:intron 30.0%
ATCCATACATACAATGAAAC+GGG + chr5_2:3260375-3260394 None:intergenic 30.0%
TTGTGAGTTTGTCAAAATCA+CGG + chr5_2:3260432-3260451 None:intergenic 30.0%
TTAGCATTGCTTAAACACAA+TGG + chr5_2:3260477-3260496 None:intergenic 30.0%
AAAAGTTTATAAGGGGAAGA+AGG + chr5_2:3260514-3260533 None:intergenic 30.0%
! AAAATACATATCGGTTGTTG+AGG - chr5_2:3260736-3260755 Msa0749750:CDS 30.0%
TATGTAATGACATTGTGTTG+AGG - chr5_2:3260875-3260894 Msa0749750:exon 30.0%
! GTTTCTTTTTCTCTCAATAG+AGG - chr5_2:3260965-3260984 Msa0749750:five_prime_UTR 30.0%
CAATACAATACAATACATGG+TGG + chr5_2:3261019-3261038 None:intergenic 30.0%
ATTAGAATTGGGAACCCTAT+AGG - chr5_2:3255936-3255955 Msa0749750:three_prime_UTR 35.0%
GGTAGTTCAATTCAACCTAT+AGG + chr5_2:3255954-3255973 None:intergenic 35.0%
!!! ACCTTTGGTTTTTTTGGGAA+CGG + chr5_2:3256142-3256161 None:intergenic 35.0%
!!! GCTGTTTTTGTAGCTATTGA+AGG - chr5_2:3256342-3256361 Msa0749750:intron 35.0%
!! GATGATTTGCAGAATGCTTT+TGG - chr5_2:3256408-3256427 Msa0749750:intron 35.0%
! CAGAATGCTTTTGGTGAATA+TGG - chr5_2:3256417-3256436 Msa0749750:intron 35.0%
ACTAGTCAATCTATACGAGT+GGG + chr5_2:3256569-3256588 None:intergenic 35.0%
AACTAGTCAATCTATACGAG+TGG + chr5_2:3256570-3256589 None:intergenic 35.0%
AGTAGGAAATGTATATGGAC+GGG - chr5_2:3256636-3256655 Msa0749750:intron 35.0%
AAATGTATATGGACGGGTAA+TGG - chr5_2:3256642-3256661 Msa0749750:intron 35.0%
!!! TATGATTGTAGGGTTTTGGA+GGG - chr5_2:3256676-3256695 Msa0749750:intron 35.0%
TTAATCTATGTTGTTGGGAG+GGG + chr5_2:3256858-3256877 None:intergenic 35.0%
ACTCAAAATTGTATTCGAGG+AGG + chr5_2:3256962-3256981 None:intergenic 35.0%
AAAAAAAAGGAAGGAGCAAG+TGG + chr5_2:3257189-3257208 None:intergenic 35.0%
! TCTTTGTTTGGGAGTTTAGA+GGG + chr5_2:3257115-3257134 None:intergenic 35.0%
! CTAAGGCTTTGTCTTTGTTT+GGG + chr5_2:3257126-3257145 None:intergenic 35.0%
AAAAAAAAGGAAGGAGCAAG+TGG - chr5_2:3257189-3257208 Msa0749750:intron 35.0%
GTGGATGAAATAGAAGACAT+TGG - chr5_2:3257208-3257227 Msa0749750:intron 35.0%
ATGAAATAGAAGACATTGGG+AGG - chr5_2:3257212-3257231 Msa0749750:intron 35.0%
TGAAATAGAAGACATTGGGA+GGG - chr5_2:3257213-3257232 Msa0749750:intron 35.0%
TACAAAATCTCCCTCATTTG+GGG - chr5_2:3257267-3257286 Msa0749750:intron 35.0%
!! CAATCACTTAGGCTTTGTTT+GGG + chr5_2:3257410-3257429 None:intergenic 35.0%
!! TCAATCACTTAGGCTTTGTT+TGG + chr5_2:3257411-3257430 None:intergenic 35.0%
! AATATCAAGGTACCTTTCCT+CGG + chr5_2:3257487-3257506 None:intergenic 35.0%
! GAATTATAGCCAGCTTTTGT+CGG + chr5_2:3257716-3257735 None:intergenic 35.0%
TAGTGAATTGGGATTCAAGA+TGG - chr5_2:3257781-3257800 Msa0749750:intron 35.0%
AGTGAATTGGGATTCAAGAT+GGG - chr5_2:3257782-3257801 Msa0749750:intron 35.0%
ACAATGATACACACTAACTG+AGG - chr5_2:3257822-3257841 Msa0749750:intron 35.0%
ACACTAACTGAGGTTATTGA+TGG - chr5_2:3257832-3257851 Msa0749750:intron 35.0%
CACTAACTGAGGTTATTGAT+GGG - chr5_2:3257833-3257852 Msa0749750:intron 35.0%
AAACTCCACATCATGGTTAT+CGG + chr5_2:3257907-3257926 None:intergenic 35.0%
! CATATCTTTTCACCGTTAGT+TGG - chr5_2:3258024-3258043 Msa0749750:intron 35.0%
GGAAAGTTAAGTCCAACTAA+CGG + chr5_2:3258039-3258058 None:intergenic 35.0%
GAGATGGCAGAAAATTTACT+TGG + chr5_2:3258483-3258502 None:intergenic 35.0%
TATGAACATAGAAACGGAGA+TGG + chr5_2:3258499-3258518 None:intergenic 35.0%
GAAAGCCCAATCAACATAAA+TGG + chr5_2:3258759-3258778 None:intergenic 35.0%
! CTTCTAACTGACTCATTGAT+AGG + chr5_2:3258791-3258810 None:intergenic 35.0%
ATGAGTCAGTTAGAAGAAAC+AGG - chr5_2:3258795-3258814 Msa0749750:intron 35.0%
!!! AGTTCCATGAAGTTTTGGTT+TGG - chr5_2:3258885-3258904 Msa0749750:intron 35.0%
!!! GTTCCATGAAGTTTTGGTTT+GGG - chr5_2:3258886-3258905 Msa0749750:intron 35.0%
AAACCCAAACCAAAACTTCA+TGG + chr5_2:3258892-3258911 None:intergenic 35.0%
!! TGAGTCTTATTCCACAAAGT+GGG - chr5_2:3258955-3258974 Msa0749750:intron 35.0%
!! CTCATCCACTTTTCTTACTA+TGG - chr5_2:3259125-3259144 Msa0749750:intron 35.0%
AAATCTCGACTTAGATGGTT+TGG + chr5_2:3259177-3259196 None:intergenic 35.0%
TGATGAAATCTCGACTTAGA+TGG + chr5_2:3259182-3259201 None:intergenic 35.0%
TGATAGCATTAGAGAGAGTT+GGG + chr5_2:3259226-3259245 None:intergenic 35.0%
ATGATAGCATTAGAGAGAGT+TGG + chr5_2:3259227-3259246 None:intergenic 35.0%
ATGTGATGAGAATTGAGTGT+TGG + chr5_2:3259284-3259303 None:intergenic 35.0%
!! CATCTTCACTTAGTTTGTGT+TGG - chr5_2:3259301-3259320 Msa0749750:intron 35.0%
TGTTATAATGAGAGGATGAG+AGG - chr5_2:3259500-3259519 Msa0749750:intron 35.0%
GAGGATATAATATGAACCGT+TGG - chr5_2:3259519-3259538 Msa0749750:intron 35.0%
!!! GACCGTATATTTTGATCCAA+CGG + chr5_2:3259538-3259557 None:intergenic 35.0%
ACTTCATAGTCAGAAGAGAA+GGG + chr5_2:3259631-3259650 None:intergenic 35.0%
TAAACGTGGAAAAACATACG+TGG + chr5_2:3259720-3259739 None:intergenic 35.0%
AAATAAGCAATTGGAAAGGG+TGG - chr5_2:3259947-3259966 Msa0749750:intron 35.0%
AATAAGCAATTGGAAAGGGT+GGG - chr5_2:3259948-3259967 Msa0749750:intron 35.0%
GTGTCATATATATGAAGCAG+TGG - chr5_2:3259972-3259991 Msa0749750:intron 35.0%
!! CAATTTTGTGAATCGGTGTT+CGG + chr5_2:3260013-3260032 None:intergenic 35.0%
! CCTTTCTTATTTCTTCTTCC+TGG + chr5_2:3260077-3260096 None:intergenic 35.0%
CCAGGAAGAAGAAATAAGAA+AGG - chr5_2:3260074-3260093 Msa0749750:intron 35.0%
AGAAATAAGAAAGGCCAAAG+AGG - chr5_2:3260083-3260102 Msa0749750:intron 35.0%
AGATTAGAGTCCAGTTAGAA+AGG + chr5_2:3260138-3260157 None:intergenic 35.0%
GACCGTATATTATGATCCAA+TGG - chr5_2:3260159-3260178 Msa0749750:intron 35.0%
TGTTATAATGAGAGGATGAG+AGG + chr5_2:3259500-3259519 None:intergenic 35.0%
TCCATACATACAATGAAACG+GGG + chr5_2:3260374-3260393 None:intergenic 35.0%
CTTAAACACAATGGCATGTT+TGG + chr5_2:3260468-3260487 None:intergenic 35.0%
TATACATGATGTCAGTTGTG+TGG - chr5_2:3260636-3260655 Msa0749750:CDS 35.0%
TTGTGTGGAACTTAAATGAG+CGG - chr5_2:3260651-3260670 Msa0749750:CDS 35.0%
GATTTCTATTTGTCCAGTTG+TGG - chr5_2:3260677-3260696 Msa0749750:CDS 35.0%
! CCGATATGTATTTTGTCTGA+CGG + chr5_2:3260730-3260749 None:intergenic 35.0%
CCGTCAGACAAAATACATAT+CGG - chr5_2:3260727-3260746 Msa0749750:CDS 35.0%
! GAGGAAGATAGTATCTCTTT+TGG - chr5_2:3260894-3260913 Msa0749750:five_prime_UTR 35.0%
ATGGTGGCAAAGAAAAAGAT+GGG + chr5_2:3261003-3261022 None:intergenic 35.0%
!!! TTTTTTGGGAACGGAAGTGA+TGG + chr5_2:3256133-3256152 None:intergenic 40.0%
TCCGTTCCCAAAAAAACCAA+AGG - chr5_2:3256138-3256157 Msa0749750:three_prime_UTR 40.0%
AGAGTTACGGTTAGAGGAAT+CGG + chr5_2:3256184-3256203 None:intergenic 40.0%
! TACAAACATCTTTGAGGACC+AGG + chr5_2:3256252-3256271 None:intergenic 40.0%
TGGGGATACAAACATCTTTG+AGG + chr5_2:3256258-3256277 None:intergenic 40.0%
!!! GGATGGATTATTTTGGTGAC+TGG - chr5_2:3256363-3256382 Msa0749750:intron 40.0%
GCACCTTAACAAAACCAGTA+CGG + chr5_2:3256476-3256495 None:intergenic 40.0%
! GACGGGTAATGGTAATCTAA+GGG - chr5_2:3256653-3256672 Msa0749750:intron 40.0%
! AGGGTATGATTGTAGGGTTT+TGG - chr5_2:3256672-3256691 Msa0749750:intron 40.0%
!! GTATGATTGTAGGGTTTTGG+AGG - chr5_2:3256675-3256694 Msa0749750:intron 40.0%
!!! ATGATTGTAGGGTTTTGGAG+GGG - chr5_2:3256677-3256696 Msa0749750:intron 40.0%
!!! AGGTTTTGAAGGGATTTGGA+AGG + chr5_2:3256942-3256961 None:intergenic 40.0%
!!! GTATTCGAGGAGGTTTTGAA+GGG + chr5_2:3256952-3256971 None:intergenic 40.0%
!! TGTATTCGAGGAGGTTTTGA+AGG + chr5_2:3256953-3256972 None:intergenic 40.0%
TGAGTTCTCCCCAAATTATG+AGG - chr5_2:3256977-3256996 Msa0749750:intron 40.0%
GAGTTCTCCCCAAATTATGA+GGG - chr5_2:3256978-3256997 Msa0749750:intron 40.0%
GAAATAGAGGAGTTTGAGAG+GGG + chr5_2:3257042-3257061 None:intergenic 40.0%
GGAAATAGAGGAGTTTGAGA+GGG + chr5_2:3257043-3257062 None:intergenic 40.0%
AGGAAATAGAGGAGTTTGAG+AGG + chr5_2:3257044-3257063 None:intergenic 40.0%
! GTCTTTGTTTGGGAGTTTAG+AGG + chr5_2:3257116-3257135 None:intergenic 40.0%
! CCTAAGGCTTTGTCTTTGTT+TGG + chr5_2:3257127-3257146 None:intergenic 40.0%
CCAAACAAAGACAAAGCCTT+AGG - chr5_2:3257124-3257143 Msa0749750:intron 40.0%
!! ACAAAGCCTTAGGCTTTGTT+TGG - chr5_2:3257134-3257153 Msa0749750:intron 40.0%
!! CAAAGCCTTAGGCTTTGTTT+GGG - chr5_2:3257135-3257154 Msa0749750:intron 40.0%
AAACTCCCAAACAAAGCCTA+AGG + chr5_2:3257402-3257421 None:intergenic 40.0%
!! GCTTTGTTTGGGAGTTTAGA+GGG - chr5_2:3257146-3257165 Msa0749750:intron 40.0%
GAAATAGAAGACATTGGGAG+GGG - chr5_2:3257214-3257233 Msa0749750:intron 40.0%
ACAAAATCTCCCTCATTTGG+GGG - chr5_2:3257268-3257287 Msa0749750:intron 40.0%
!!! TTTTGAGTTCCCCCAAATGA+GGG + chr5_2:3257280-3257299 None:intergenic 40.0%
!!! TTTTTGAGTTCCCCCAAATG+AGG + chr5_2:3257281-3257300 None:intergenic 40.0%
! ATATCAAGGTACCTTTCCTC+GGG + chr5_2:3257486-3257505 None:intergenic 40.0%
!! GGAAAGGTACCTTGATATTC+CGG - chr5_2:3257488-3257507 Msa0749750:intron 40.0%
TCATGAATCAAATGGCAAGC+TGG - chr5_2:3257676-3257695 Msa0749750:intron 40.0%
AGATACCGATAACCATGATG+TGG - chr5_2:3257899-3257918 Msa0749750:intron 40.0%
CTCAATCAAACTCCACATCA+TGG + chr5_2:3257914-3257933 None:intergenic 40.0%
TGATGTGGAGTTTGATTGAG+AGG - chr5_2:3257914-3257933 Msa0749750:intron 40.0%
ATTGAGAGGTAGGTAAAGTG+AGG - chr5_2:3257928-3257947 Msa0749750:intron 40.0%
TCCATTTCATGTCTCAGTCA+TGG - chr5_2:3258056-3258075 Msa0749750:intron 40.0%
! TTGACCTCAAGCTGTTACTT+TGG - chr5_2:3258112-3258131 Msa0749750:CDS 40.0%
!! TGACCTCAAGCTGTTACTTT+GGG - chr5_2:3258113-3258132 Msa0749750:CDS 40.0%
! CACACAGTTACTTGTTAGGA+AGG + chr5_2:3258297-3258316 None:intergenic 40.0%
CCTACACACAGTTACTTGTT+AGG + chr5_2:3258301-3258320 None:intergenic 40.0%
CCTAACAAGTAACTGTGTGT+AGG - chr5_2:3258298-3258317 Msa0749750:intron 40.0%
CAGTTTCAGAAACTGCAGAT+TGG - chr5_2:3258542-3258561 Msa0749750:intron 40.0%
GACTCAGTAGTTGCTGTAAT+AGG + chr5_2:3258941-3258960 None:intergenic 40.0%
!! CTGAGTCTTATTCCACAAAG+TGG - chr5_2:3258954-3258973 Msa0749750:intron 40.0%
!! GAGTCTTATTCCACAAAGTG+GGG - chr5_2:3258956-3258975 Msa0749750:intron 40.0%
TTCCATTGCCTTTCGCAATT+CGG - chr5_2:3259091-3259110 Msa0749750:intron 40.0%
! TTAGATGGTTTGGACATGTG+TGG + chr5_2:3259167-3259186 None:intergenic 40.0%
ACGTGTGGAAAGACTAGAAA+GGG + chr5_2:3259261-3259280 None:intergenic 40.0%
!! TTCTTCGTCGTTTTCTACGA+TGG - chr5_2:3259326-3259345 Msa0749750:intron 40.0%
TTCAAGAGTGGAGTATGTGT+TGG + chr5_2:3259409-3259428 None:intergenic 40.0%
! TAGAGGGTGTATCAAATGAG+AGG - chr5_2:3259475-3259494 Msa0749750:intron 40.0%
!! GAGAGGAGTGTTATAATGAG+AGG - chr5_2:3259492-3259511 Msa0749750:intron 40.0%
GTGTGTTCTGCCTTTCTAAT+TGG + chr5_2:3259572-3259591 None:intergenic 40.0%
GACTTCATAGTCAGAAGAGA+AGG + chr5_2:3259632-3259651 None:intergenic 40.0%
!! AAAACATACGTGGCTTGGTT+GGG + chr5_2:3259710-3259729 None:intergenic 40.0%
!! AAAAACATACGTGGCTTGGT+TGG + chr5_2:3259711-3259730 None:intergenic 40.0%
CATATATGCTTGTGAGAGAG+AGG - chr5_2:3260043-3260062 Msa0749750:intron 40.0%
!! GAGAGGAGTGTTATAATGAG+AGG + chr5_2:3259492-3259511 None:intergenic 40.0%
! TAGAGGGTGTATCAAATGAG+AGG + chr5_2:3259475-3259494 None:intergenic 40.0%
AATGAAACGGGGTTGAAAGA+TGG + chr5_2:3260363-3260382 None:intergenic 40.0%
ACCCCGTTTCATTGTATGTA+TGG - chr5_2:3260370-3260389 Msa0749750:intron 40.0%
CAATGGCATGTTTGGTAGAT+TGG + chr5_2:3260460-3260479 None:intergenic 40.0%
TTTCAATATCTCCTCCTAGG+AGG + chr5_2:3260602-3260621 None:intergenic 40.0%
TCCTAGGAGGAGATATTGAA+AGG - chr5_2:3260601-3260620 Msa0749750:intron 40.0%
CCTAGGAGGAGATATTGAAA+GGG - chr5_2:3260602-3260621 Msa0749750:intron 40.0%
!! TAGGAAAAAGCATCCACAAC+TGG + chr5_2:3260693-3260712 None:intergenic 40.0%
CATGGTGGCAAAGAAAAAGA+TGG + chr5_2:3261004-3261023 None:intergenic 40.0%
GAGAGGAGTGAGTGTATGAA+GGG + chr5_2:3255975-3255994 None:intergenic 45.0%
AGAGAGGAGTGAGTGTATGA+AGG + chr5_2:3255976-3255995 None:intergenic 45.0%
GAAATCCAAAGCTTCTCCGT+CGG + chr5_2:3256028-3256047 None:intergenic 45.0%
TCCATCAAGTCATCTTCCTC+TGG + chr5_2:3256054-3256073 None:intergenic 45.0%
! GATGACTTGATGGACGAAGA+AGG - chr5_2:3256060-3256079 Msa0749750:three_prime_UTR 45.0%
! GATTTGAGTTTGGGATGTGG+AGG + chr5_2:3256108-3256127 None:intergenic 45.0%
!! GTGATGGCGGATTTGAGTTT+GGG + chr5_2:3256117-3256136 None:intergenic 45.0%
!! AGTGATGGCGGATTTGAGTT+TGG + chr5_2:3256118-3256137 None:intergenic 45.0%
!!! CCGCGACCTTTGGTTTTTTT+GGG + chr5_2:3256147-3256166 None:intergenic 45.0%
CCCAAAAAAACCAAAGGTCG+CGG - chr5_2:3256144-3256163 Msa0749750:three_prime_UTR 45.0%
!!! ACCGCGACCTTTGGTTTTTT+TGG + chr5_2:3256148-3256167 None:intergenic 45.0%
TAGAGGAATCGGAATCCTGA+CGG + chr5_2:3256173-3256192 None:intergenic 45.0%
AATCAGCGAGACGAGAGTTA+CGG + chr5_2:3256197-3256216 None:intergenic 45.0%
!! AGCAGTGAGAGTATCGAAAC+CGG + chr5_2:3256220-3256239 None:intergenic 45.0%
TTTCGATACTCTCACTGCTG+AGG - chr5_2:3256221-3256240 Msa0749750:three_prime_UTR 45.0%
TTCGATACTCTCACTGCTGA+GGG - chr5_2:3256222-3256241 Msa0749750:three_prime_UTR 45.0%
! TTTGGTGACTGGTGTACATG+AGG - chr5_2:3256374-3256393 Msa0749750:intron 45.0%
TTGAATCTTGATCGCCGTAC+TGG - chr5_2:3256459-3256478 Msa0749750:intron 45.0%
!!! TCGCCGTACTGGTTTTGTTA+AGG - chr5_2:3256470-3256489 Msa0749750:intron 45.0%
! GGACGGGTAATGGTAATCTA+AGG - chr5_2:3256652-3256671 Msa0749750:intron 45.0%
! TATGTTGTTGGGAGGGGTTT+TGG + chr5_2:3256852-3256871 None:intergenic 45.0%
!!! GAGGAGGTTTTGAAGGGATT+TGG + chr5_2:3256946-3256965 None:intergenic 45.0%
AAAAAGGAAGGAGCAAGTGG+AGG + chr5_2:3257192-3257211 None:intergenic 45.0%
TTTGGGAGTTTAGAGGGCAA+GGG + chr5_2:3257109-3257128 None:intergenic 45.0%
!! GGCTTTGTTTGGGAGTTTAG+AGG - chr5_2:3257145-3257164 Msa0749750:intron 45.0%
GGAGTTTAGAGGGAAGTGAA+GGG - chr5_2:3257156-3257175 Msa0749750:intron 45.0%
TACCTTGATATTCCGGAGCA+TGG - chr5_2:3257495-3257514 Msa0749750:intron 45.0%
AACCATGCTCCGGAATATCA+AGG + chr5_2:3257500-3257519 None:intergenic 45.0%
CAATGTTGACCGACAAAAGC+TGG - chr5_2:3257704-3257723 Msa0749750:intron 45.0%
GTGGAGTTTGATTGAGAGGT+AGG - chr5_2:3257918-3257937 Msa0749750:intron 45.0%
TCCCATGCTGGAACAATCTT+CGG + chr5_2:3257954-3257973 None:intergenic 45.0%
TTCCAGCATGGGATTGAACT+TGG - chr5_2:3257961-3257980 Msa0749750:intron 45.0%
TCCAGCATGGGATTGAACTT+GGG - chr5_2:3257962-3257981 Msa0749750:intron 45.0%
GCCATGACTGAGACATGAAA+TGG + chr5_2:3258060-3258079 None:intergenic 45.0%
!! GACCTCAAGCTGTTACTTTG+GGG - chr5_2:3258114-3258133 Msa0749750:CDS 45.0%
AACCCCAAAGTAACAGCTTG+AGG + chr5_2:3258119-3258138 None:intergenic 45.0%
!! CTGTTACTTTGGGGTTCAGA+TGG - chr5_2:3258123-3258142 Msa0749750:CDS 45.0%
TGAGATCAAAGCAGCGAAAG+TGG + chr5_2:3258381-3258400 None:intergenic 45.0%
GATTGAATATGAGCGCTCTG+AGG - chr5_2:3258682-3258701 Msa0749750:intron 45.0%
CTTATTCCACAAAGTGGGGT+TGG - chr5_2:3258960-3258979 Msa0749750:intron 45.0%
GGAAGGCCAACAAACACTAT+TGG + chr5_2:3259075-3259094 None:intergenic 45.0%
GAATTGCGAAAGGCAATGGA+AGG + chr5_2:3259092-3259111 None:intergenic 45.0%
AACCGAATTGCGAAAGGCAA+TGG + chr5_2:3259096-3259115 None:intergenic 45.0%
AAAGGCAACCGAATTGCGAA+AGG + chr5_2:3259102-3259121 None:intergenic 45.0%
CATTAGAGAGAGTTGGGTAG+AGG + chr5_2:3259220-3259239 None:intergenic 45.0%
GTGGAAAGACTAGAAAGGGT+AGG + chr5_2:3259257-3259276 None:intergenic 45.0%
GACGTGTGGAAAGACTAGAA+AGG + chr5_2:3259262-3259281 None:intergenic 45.0%
!! AGAATTGAGTGTTGGACGTG+TGG + chr5_2:3259276-3259295 None:intergenic 45.0%
GTGGAAAAACATACGTGGCT+TGG + chr5_2:3259715-3259734 None:intergenic 45.0%
TATGCTTGTGAGAGAGAGGA+AGG - chr5_2:3260047-3260066 Msa0749750:intron 45.0%
AGAGTCCAGTTAGAAAGGCA+CGG + chr5_2:3260133-3260152 None:intergenic 45.0%
! TGACATTTTGCAGACCTCAG+CGG - chr5_2:3260564-3260583 Msa0749750:intron 45.0%
CCCTTTCAATATCTCCTCCT+AGG + chr5_2:3260605-3260624 None:intergenic 45.0%
GACGGAAGCTGCATAAGTAT+AGG + chr5_2:3260712-3260731 None:intergenic 45.0%
GATTGCGTCTTGTGTGTGAT+GGG - chr5_2:3260916-3260935 Msa0749750:five_prime_UTR 45.0%
GTGGCAAAGAAAAAGATGGG+AGG + chr5_2:3261000-3261019 None:intergenic 45.0%
!!! TGTATATAAATTTTATAAAA+TGG - chr5_2:3258164-3258183 Msa0749750:CDS 5.0%
!! AATATTTAAAAAATATTTAG+AGG + chr5_2:3259050-3259069 None:intergenic 5.0%
!! TTATATATATATATATATAG+AGG - chr5_2:3259458-3259477 Msa0749750:intron 5.0%
!! TATATATATATATATATAGA+GGG - chr5_2:3259459-3259478 Msa0749750:intron 5.0%
!! TATATATATATATATATAGA+GGG + chr5_2:3259459-3259478 None:intergenic 5.0%
!! ATATATATATATATATATAG+AGG + chr5_2:3260239-3260258 None:intergenic 5.0%
CATCGTCGCTGAATAGAGAG+AGG + chr5_2:3255992-3256011 None:intergenic 50.0%
CTCTATTCAGCGACGATGCA+AGG - chr5_2:3255994-3256013 Msa0749750:three_prime_UTR 50.0%
!! AGCTTTGGATTTCGAGCCAG+AGG - chr5_2:3256035-3256054 Msa0749750:three_prime_UTR 50.0%
GCCAGAGGAAGATGACTTGA+TGG - chr5_2:3256050-3256069 Msa0749750:three_prime_UTR 50.0%
! GCGGATTTGAGTTTGGGATG+TGG + chr5_2:3256111-3256130 None:intergenic 50.0%
TTTGGGAACGGAAGTGATGG+CGG + chr5_2:3256130-3256149 None:intergenic 50.0%
GAGACGAGAGTTACGGTTAG+AGG + chr5_2:3256190-3256209 None:intergenic 50.0%
!! AACTCTCGTCTCGCTGATTC+CGG - chr5_2:3256198-3256217 Msa0749750:three_prime_UTR 50.0%
!!! ATTGTAGGGTTTTGGAGGGG+AGG - chr5_2:3256680-3256699 Msa0749750:intron 50.0%
!!! TTGTAGGGTTTTGGAGGGGA+GGG - chr5_2:3256681-3256700 Msa0749750:intron 50.0%
TAGAGGAGTTTGAGAGGGGA+GGG + chr5_2:3257038-3257057 None:intergenic 50.0%
ATAGAGGAGTTTGAGAGGGG+AGG + chr5_2:3257039-3257058 None:intergenic 50.0%
GGAGCAAGTGGAGGAAATAG+AGG + chr5_2:3257055-3257074 None:intergenic 50.0%
GTTTGGGAGTTTAGAGGGCA+AGG + chr5_2:3257110-3257129 None:intergenic 50.0%
GGGAGTTTAGAGGGAAGTGA+AGG - chr5_2:3257155-3257174 Msa0749750:intron 50.0%
ATAGAAGACATTGGGAGGGG+AGG - chr5_2:3257217-3257236 Msa0749750:intron 50.0%
TAGAAGACATTGGGAGGGGA+GGG - chr5_2:3257218-3257237 Msa0749750:intron 50.0%
!! GTTAACCTTCTGGTTTCCCG+AGG - chr5_2:3257467-3257486 Msa0749750:intron 50.0%
GCCGAAGATTGTTCCAGCAT+GGG - chr5_2:3257950-3257969 Msa0749750:intron 50.0%
ACCCAAGTTCAATCCCATGC+TGG + chr5_2:3257966-3257985 None:intergenic 50.0%
GTTGATTGGGCTTTCAGCAG+TGG - chr5_2:3258764-3258783 Msa0749750:intron 50.0%
ATGTAGCCAACCCCACTTTG+TGG + chr5_2:3258969-3258988 None:intergenic 50.0%
!! ACAAAGTGGGGTTGGCTACA+TGG - chr5_2:3258968-3258987 Msa0749750:intron 50.0%
! GATGGTTTGGACATGTGTGG+AGG + chr5_2:3259164-3259183 None:intergenic 50.0%
GAGAGAGAGGAAGGAAATCC+AGG - chr5_2:3260056-3260075 Msa0749750:intron 50.0%
AGGAGCGACGCTGTTTGATT+AGG - chr5_2:3260103-3260122 Msa0749750:intron 50.0%
GGATTGCGTCTTGTGTGTGA+TGG - chr5_2:3260915-3260934 Msa0749750:five_prime_UTR 50.0%
ATCCAAAGCTTCTCCGTCGG+CGG + chr5_2:3256025-3256044 None:intergenic 55.0%
GGGATGTGGAGGAGAAGCTT+CGG + chr5_2:3256097-3256116 None:intergenic 55.0%
GATACTCTCACTGCTGAGGG+TGG - chr5_2:3256225-3256244 Msa0749750:three_prime_UTR 55.0%
!!! TGTAGGGTTTTGGAGGGGAG+GGG - chr5_2:3256682-3256701 Msa0749750:intron 55.0%
!! GTTGTTGGGAGGGGTTTTGG+AGG + chr5_2:3256849-3256868 None:intergenic 55.0%
TTTGAGAGGGGAGGGCTTTG+GGG + chr5_2:3257030-3257049 None:intergenic 55.0%
GTTTGAGAGGGGAGGGCTTT+GGG + chr5_2:3257031-3257050 None:intergenic 55.0%
AGTTTGAGAGGGGAGGGCTT+TGG + chr5_2:3257032-3257051 None:intergenic 55.0%
! TAGAGGGCAAGGGAGGGTTT+TGG + chr5_2:3257099-3257118 None:intergenic 55.0%
GGAGTTTAGAGGGCAAGGGA+GGG + chr5_2:3257105-3257124 None:intergenic 55.0%
! ATTGGGAGGGGAGGGCTTTT+GGG - chr5_2:3257226-3257245 Msa0749750:intron 55.0%
CCTTTCCTCGGGAAACCAGA+AGG + chr5_2:3257475-3257494 None:intergenic 55.0%
!! CCTTCTGGTTTCCCGAGGAA+AGG - chr5_2:3257472-3257491 Msa0749750:intron 55.0%
GGCCGAAGATTGTTCCAGCA+TGG - chr5_2:3257949-3257968 Msa0749750:intron 55.0%
! ATACTGCAGGGAGTGCAGTG+AGG + chr5_2:3258190-3258209 None:intergenic 55.0%
!! ATGAGCGCTCTGAGGAAGCT+CGG - chr5_2:3258690-3258709 Msa0749750:intron 55.0%
AAGGGCGAGCGAAGGAAGAT+GGG + chr5_2:3259613-3259632 None:intergenic 55.0%
!! CGTGGCTTGGTTGGGATTGT+TGG + chr5_2:3259702-3259721 None:intergenic 55.0%
CAAACAGCGTCGCTCCTCTT+TGG + chr5_2:3260100-3260119 None:intergenic 55.0%
GTGTGCCGTGCCTTTCTAAC+TGG - chr5_2:3260125-3260144 Msa0749750:intron 55.0%
CTGACGGAAACCGCGACCTT+TGG + chr5_2:3256157-3256176 None:intergenic 60.0%
CAAAGGTCGCGGTTTCCGTC+AGG - chr5_2:3256155-3256174 Msa0749750:three_prime_UTR 60.0%
!!! GTAGGGTTTTGGAGGGGAGG+GGG - chr5_2:3256683-3256702 Msa0749750:intron 60.0%
! TTGAGAGGGGAGGGCTTTGG+GGG + chr5_2:3257029-3257048 None:intergenic 60.0%
GGGAGTTTAGAGGGCAAGGG+AGG + chr5_2:3257106-3257125 None:intergenic 60.0%
! CATTGGGAGGGGAGGGCTTT+TGG - chr5_2:3257225-3257244 Msa0749750:intron 60.0%
! TTGGGAGGGGAGGGCTTTTG+GGG - chr5_2:3257227-3257246 Msa0749750:intron 60.0%
GAAGGGCGAGCGAAGGAAGA+TGG + chr5_2:3259614-3259633 None:intergenic 60.0%
CAGAAGAGAAGGGCGAGCGA+AGG + chr5_2:3259621-3259640 None:intergenic 60.0%
TCTCCTCCTAGGAGGACTCC+TGG + chr5_2:3260594-3260613 None:intergenic 60.0%
!! ATGCAAGGAAGCGCCGCCGA+CGG - chr5_2:3256009-3256028 Msa0749750:three_prime_UTR 65.0%
CTCACTGCTGAGGGTGGTCC+TGG - chr5_2:3256231-3256250 Msa0749750:three_prime_UTR 65.0%
!! TTTTGGAGGGGAGGGGGTGG+AGG - chr5_2:3256689-3256708 Msa0749750:intron 65.0%
!! TGAGAGGGGAGGGCTTTGGG+GGG + chr5_2:3257028-3257047 None:intergenic 65.0%
GCTCCAGGAGTCCTCCTAGG+AGG - chr5_2:3260588-3260607 Msa0749750:intron 65.0%
CGCCGCCGACGGAGAAGCTT+TGG - chr5_2:3256020-3256039 Msa0749750:three_prime_UTR 70.0%
!!! GGGTTTTGGAGGGGAGGGGG+TGG - chr5_2:3256686-3256705 Msa0749750:intron 70.0%
GGCGCTCCAGGAGTCCTCCT+AGG - chr5_2:3260585-3260604 Msa0749750:intron 70.0%
GCAGACCTCAGCGGCGCTCC+AGG - chr5_2:3260573-3260592 Msa0749750:intron 75.0%
!! GGACTCCTGGAGCGCCGCTG+AGG + chr5_2:3260581-3260600 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 3255819 3261079 3255819 ID=Msa0749750;Name=Msa0749750
chr5_2 mRNA 3255819 3261079 3255819 ID=Msa0749750-mRNA-1;Parent=Msa0749750;Name=Msa0749750-mRNA-1;_AED=0.03;_eAED=0.03;_QI=168|1|1|1|0.75|0.6|5|460|193
chr5_2 exon 3255819 3256321 3255819 ID=Msa0749750-mRNA-1:exon:1113;Parent=Msa0749750-mRNA-1
chr5_2 exon 3258082 3258227 3258082 ID=Msa0749750-mRNA-1:exon:1112;Parent=Msa0749750-mRNA-1
chr5_2 exon 3260407 3260543 3260407 ID=Msa0749750-mRNA-1:exon:1111;Parent=Msa0749750-mRNA-1
chr5_2 exon 3260634 3261005 3260634 ID=Msa0749750-mRNA-1:exon:1110;Parent=Msa0749750-mRNA-1
chr5_2 exon 3261028 3261079 3261028 ID=Msa0749750-mRNA-1:exon:1109;Parent=Msa0749750-mRNA-1
chr5_2 five_prime_UTR 3261028 3261079 3261028 ID=Msa0749750-mRNA-1:five_prime_utr;Parent=Msa0749750-mRNA-1
chr5_2 five_prime_UTR 3260890 3261005 3260890 ID=Msa0749750-mRNA-1:five_prime_utr;Parent=Msa0749750-mRNA-1
chr5_2 CDS 3260634 3260889 3260634 ID=Msa0749750-mRNA-1:cds;Parent=Msa0749750-mRNA-1
chr5_2 CDS 3260407 3260543 3260407 ID=Msa0749750-mRNA-1:cds;Parent=Msa0749750-mRNA-1
chr5_2 CDS 3258082 3258227 3258082 ID=Msa0749750-mRNA-1:cds;Parent=Msa0749750-mRNA-1
chr5_2 CDS 3256279 3256321 3256279 ID=Msa0749750-mRNA-1:cds;Parent=Msa0749750-mRNA-1
chr5_2 three_prime_UTR 3255819 3256278 3255819 ID=Msa0749750-mRNA-1:three_prime_utr;Parent=Msa0749750-mRNA-1
Gene Sequence

>Msa0749750

ATGCAAGGAAGCGCCGCCGACGGAGAAGCTTTGGATTTCGAGCCAGAGGAAGATGACTTGATGGACGAAGAAGGTGCTGTTGACGCCGAAGCTTCTCCTCCACATCCCAAACTCAAATCCGCCATCACTTCCGTTCCCAAAAAAACCAAAGGTCGCGGTTTCCGTCAGGATTCCGATTCCTCTAACCGTAACTCTCGTCTCGCTGATTCCGGTTTCGATACTCTCACTGCTGAGGGTGGTCCTGGTCCTCAAAGATCTATTGAAGGATGGATTATTTTGGTGACTGGTGTACATGAGGAAGCTCAAGATGATGATTTGCAGAATGCTTTTGGTGAATATGGTGATATTAAGAATCTTCACTTGAATCTTGATCGCCGTACTGGTTTTGTTAAGGGTTATGCACTGATTGAATATGAGCGCTCTGAGGAAGCTCGGAATGCAATAGAGAATTTGAATGGATCTGTGCTTCTCACACAAACCATTTATGTTGATTGGGCTTTCAGCAGTGGACCTATCAATGAGTCAGTTAGAAGAAACAGACCTCAGCGGCGCTCCAGGAGTCCTCCTAGGAGGAGATATTGA
Protein sequence

>Msa0749750

MQGSAADGEALDFEPEEDDLMDEEGAVDAEASPPHPKLKSAITSVPKKTKGRGFRQDSDSSNRNSRLADSGFDTLTAEGGPGPQRSIEGWIILVTGVHEEAQDDDLQNAFGEYGDIKNLHLNLDRRTGFVKGYALIEYERSEEARNAIENLNGSVLLTQTIYVDWAFSSGPINESVRRNRPQRRSRSPPRRRY*