AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0750100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750100 MtrunA17_Chr5g0396371 99.482 193 1 0 1 193 1 193 1.75e-142 394
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750100 AT1G51510.1 64.246 179 54 6 9 178 7 184 1.22e-73 221
Msa0750100 AT5G64200.2 32.353 102 68 1 79 180 5 105 2.75e-11 61.6
Msa0750100 AT5G64200.1 32.353 102 68 1 79 180 5 105 2.75e-11 61.6

Find 75 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAAGTCTATTATGGTTTA+TGG 0.120038 5_2:-3526918 Msa0750100:three_prime_UTR
CACAAACCATTTATGTTGAT+TGG 0.221624 5_2:-3528963 Msa0750100:CDS
TATTAACTCAAAGTCTATTA+TGG 0.252809 5_2:-3526925 Msa0750100:three_prime_UTR
TATTGAAGGATGGATTATTT+TGG 0.283878 5_2:-3531362 Msa0750100:CDS
AACTCTCGTCTCGCTGATTC+CGG 0.283971 5_2:-3531520 Msa0750100:CDS
GAGGAAGATAGTATCTCTTT+TGG 0.289491 5_2:-3526819 Msa0750100:three_prime_UTR
GAAAGCCCAATCAACATAAA+TGG 0.296555 5_2:+3528957 None:intergenic
CGCCGCCGACGGAGAAGCTT+TGG 0.306556 5_2:-3531698 Msa0750100:CDS
TAATTCAAACGAATTAGAAT+TGG 0.316131 5_2:-3531794 Msa0750100:five_prime_UTR
AGTGATGGCGGATTTGAGTT+TGG 0.318147 5_2:+3531603 None:intergenic
GGTAGTTCAATTCAACCTAT+AGG 0.325115 5_2:+3531767 None:intergenic
GATGATTTGCAGAATGCTTT+TGG 0.361063 5_2:-3531310 Msa0750100:CDS
GTGATGGCGGATTTGAGTTT+GGG 0.363430 5_2:+3531604 None:intergenic
CTGACGGAAACCGCGACCTT+TGG 0.364553 5_2:+3531564 None:intergenic
GTAGTTCAATTCAACCTATA+GGG 0.373316 5_2:+3531768 None:intergenic
CTTCTAACTGACTCATTGAT+AGG 0.375297 5_2:+3528925 None:intergenic
ACAAACCATTTATGTTGATT+GGG 0.381801 5_2:-3528962 Msa0750100:CDS
GCAGACCTCAGCGGCGCTCC+AGG 0.401643 5_2:-3527140 Msa0750100:intron
GAGAGGAGTGAGTGTATGAA+GGG 0.420705 5_2:+3531746 None:intergenic
CTCACTGCTGAGGGTGGTCC+TGG 0.420911 5_2:-3531487 Msa0750100:CDS
ATTAGAATTGGGAACCCTAT+AGG 0.424830 5_2:-3531782 Msa0750100:five_prime_UTR
AATTCAAACGAATTAGAATT+GGG 0.426378 5_2:-3531793 Msa0750100:five_prime_UTR
AGAGAGGAGTGAGTGTATGA+AGG 0.429108 5_2:+3531745 None:intergenic
GCCAGAGGAAGATGACTTGA+TGG 0.429124 5_2:-3531668 Msa0750100:CDS
ATGAGTCAGTTAGAAGAAAC+AGG 0.431891 5_2:-3528918 Msa0750100:intron
GAGACGAGAGTTACGGTTAG+AGG 0.454033 5_2:+3531531 None:intergenic
GCGGATTTGAGTTTGGGATG+TGG 0.456064 5_2:+3531610 None:intergenic
CAAAGGTCGCGGTTTCCGTC+AGG 0.458944 5_2:-3531563 Msa0750100:CDS
GGATTGCGTCTTGTGTGTGA+TGG 0.470406 5_2:-3526798 Msa0750100:three_prime_UTR
TTGAATCTTGATCGCCGTAC+TGG 0.470728 5_2:-3531259 Msa0750100:CDS
TCTCCTCCTAGGAGGACTCC+TGG 0.475841 5_2:+3527122 None:intergenic
GATTTCTATTTGTCCAGTTG+TGG 0.476460 5_2:-3527036 Msa0750100:three_prime_UTR
AGAGTTACGGTTAGAGGAAT+CGG 0.477329 5_2:+3531537 None:intergenic
TCCATCAAGTCATCTTCCTC+TGG 0.480725 5_2:+3531667 None:intergenic
CCGTCAGACAAAATACATAT+CGG 0.482615 5_2:-3526986 Msa0750100:three_prime_UTR
GTTGATTGGGCTTTCAGCAG+TGG 0.486700 5_2:-3528949 Msa0750100:CDS
CTCTATTCAGCGACGATGCA+AGG 0.487696 5_2:-3531724 Msa0750100:exon
AATGCAATAGAGAATTTGAA+TGG 0.500993 5_2:-3529000 Msa0750100:CDS
TGTATTGTATTGTATTTACA+TGG 0.506811 5_2:-3526676 Msa0750100:three_prime_UTR
TGGGGATACAAACATCTTTG+AGG 0.509393 5_2:+3531463 None:intergenic
CCCTTTCAATATCTCCTCCT+AGG 0.518724 5_2:+3527111 None:intergenic
GGGATGTGGAGGAGAAGCTT+CGG 0.519462 5_2:+3531624 None:intergenic
GATTGCGTCTTGTGTGTGAT+GGG 0.524426 5_2:-3526797 Msa0750100:three_prime_UTR
AGCAGTGAGAGTATCGAAAC+CGG 0.528470 5_2:+3531501 None:intergenic
TTCGATACTCTCACTGCTGA+GGG 0.535196 5_2:-3531496 Msa0750100:CDS
ATGCAAGGAAGCGCCGCCGA+CGG 0.548735 5_2:-3531709 Msa0750100:CDS
TCCTAGGAGGAGATATTGAA+AGG 0.548743 5_2:-3527112 Msa0750100:exon
GGCGCTCCAGGAGTCCTCCT+AGG 0.551753 5_2:-3527128 Msa0750100:CDS
TACAAACATCTTTGAGGACC+AGG 0.553987 5_2:+3531469 None:intergenic
GGACTCCTGGAGCGCCGCTG+AGG 0.554772 5_2:+3527135 None:intergenic
AAAATACATATCGGTTGTTG+AGG 0.562247 5_2:-3526977 Msa0750100:three_prime_UTR
ATGAGCGCTCTGAGGAAGCT+CGG 0.562915 5_2:-3529023 Msa0750100:CDS
AATCAGCGAGACGAGAGTTA+CGG 0.563114 5_2:+3531524 None:intergenic
GATGACTTGATGGACGAAGA+AGG 0.572561 5_2:-3531658 Msa0750100:CDS
GATTTGAGTTTGGGATGTGG+AGG 0.573507 5_2:+3531613 None:intergenic
ATACAATACAATACAATACA+TGG 0.578585 5_2:+3526694 None:intergenic
AGCTTTGGATTTCGAGCCAG+AGG 0.579650 5_2:-3531683 Msa0750100:CDS
GACGGAAGCTGCATAAGTAT+AGG 0.580468 5_2:+3527004 None:intergenic
ATCCAAAGCTTCTCCGTCGG+CGG 0.583085 5_2:+3531696 None:intergenic
CCTAGGAGGAGATATTGAAA+GGG 0.586913 5_2:-3527111 Msa0750100:exon
TTTCGATACTCTCACTGCTG+AGG 0.590321 5_2:-3531497 Msa0750100:CDS
TTTGGGAACGGAAGTGATGG+CGG 0.614347 5_2:+3531591 None:intergenic
GCTCCAGGAGTCCTCCTAGG+AGG 0.642226 5_2:-3527125 Msa0750100:CDS
TTTCAATATCTCCTCCTAGG+AGG 0.646524 5_2:+3527114 None:intergenic
GATACTCTCACTGCTGAGGG+TGG 0.647746 5_2:-3531493 Msa0750100:CDS
TATACATGATGTCAGTTGTG+TGG 0.649704 5_2:-3527077 Msa0750100:three_prime_UTR
CATCGTCGCTGAATAGAGAG+AGG 0.655964 5_2:+3531729 None:intergenic
GCACCTTAACAAAACCAGTA+CGG 0.658816 5_2:+3531245 None:intergenic
TTTGGTGACTGGTGTACATG+AGG 0.661358 5_2:-3531344 Msa0750100:CDS
TAGAGGAATCGGAATCCTGA+CGG 0.677725 5_2:+3531548 None:intergenic
GATTGAATATGAGCGCTCTG+AGG 0.688874 5_2:-3529031 Msa0750100:CDS
CAATACAATACAATACATGG+TGG 0.700385 5_2:+3526697 None:intergenic
GAAATCCAAAGCTTCTCCGT+CGG 0.701772 5_2:+3531693 None:intergenic
TATGTAATGACATTGTGTTG+AGG 0.711007 5_2:-3526838 Msa0750100:three_prime_UTR
TTGTGTGGAACTTAAATGAG+CGG 0.731925 5_2:-3527062 Msa0750100:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTTAATAAAATAAGATA+AGG + chr5_2:3529245-3529264 None:intergenic 10.0%
!!! TATCTTATTTTATTAAGAAA+AGG - chr5_2:3529245-3529264 Msa0750100:intron 10.0%
!! AATTGACAAAAATTGAAATT+GGG + chr5_2:3527114-3527133 None:intergenic 15.0%
!! AAATTGACAAAAATTGAAAT+TGG + chr5_2:3527115-3527134 None:intergenic 15.0%
!!! TACTTTTCATTCTTAAATTA+TGG - chr5_2:3527552-3527571 Msa0750100:intron 15.0%
!! TTGAAAAAAAAAAAAAAGGA+AGG - chr5_2:3528021-3528040 Msa0750100:intron 15.0%
!!! AATTTAATTTTATGATAGAG+AGG - chr5_2:3530695-3530714 Msa0750100:intron 15.0%
!! TAATACAAAAAATAAGCAAT+TGG - chr5_2:3530780-3530799 Msa0750100:intron 15.0%
!! AAACTATGAAAAGTTTATAA+GGG + chr5_2:3531364-3531383 None:intergenic 15.0%
!! TAAACTATGAAAAGTTTATA+AGG + chr5_2:3531365-3531384 None:intergenic 15.0%
!! TAATTCAAACGAATTAGAAT+TGG - chr5_2:3526761-3526780 Msa0750100:three_prime_UTR 20.0%
!! AATTCAAACGAATTAGAATT+GGG - chr5_2:3526762-3526781 Msa0750100:three_prime_UTR 20.0%
!! ATTGACAAAAATTGAAATTG+GGG + chr5_2:3527113-3527132 None:intergenic 20.0%
!! AGAAGAAAAAAAAAAAAGGA+AGG + chr5_2:3527915-3527934 None:intergenic 20.0%
!! TGGAAGAAGAAAAAAAAAAA+AGG + chr5_2:3527919-3527938 None:intergenic 20.0%
!!! GGCTTTGAAAAAAAAAAAAA+AGG - chr5_2:3528017-3528036 Msa0750100:intron 20.0%
!! TTGAGAAATATATGGAAAAA+TGG + chr5_2:3528225-3528244 None:intergenic 20.0%
!! TTTATAGACAGTGTATATTA+CGG + chr5_2:3528415-3528434 None:intergenic 20.0%
!! TTTGAAAAAAAAATACTGCA+GGG + chr5_2:3529043-3529062 None:intergenic 20.0%
!! ATTTGAAAAAAAAATACTGC+AGG + chr5_2:3529044-3529063 None:intergenic 20.0%
!!! AATGCAGTTTTGATTTTTAA+AGG - chr5_2:3529089-3529108 Msa0750100:intron 20.0%
!!! TACTTGTAATTTTGTAAACA+GGG - chr5_2:3529288-3529307 Msa0750100:intron 20.0%
!!! TGATAAGCATTTTGATTTTA+GGG - chr5_2:3529492-3529511 Msa0750100:intron 20.0%
!!! AAGAAACAGGTAATTTATTT+TGG - chr5_2:3529650-3529669 Msa0750100:intron 20.0%
!!! TTGGTTTTATATTTATCTAC+AGG - chr5_2:3529669-3529688 Msa0750100:intron 20.0%
!!! TGGTTTTATATTTATCTACA+GGG - chr5_2:3529670-3529689 Msa0750100:intron 20.0%
!! TTTACATCATTTATTTGAGT+TGG - chr5_2:3529752-3529771 Msa0750100:intron 20.0%
!!! GCAAAAATAAATTTTACAGT+TGG + chr5_2:3530229-3530248 None:intergenic 20.0%
!! ATATATATAAAATGTGCAGT+AGG + chr5_2:3530290-3530309 None:intergenic 20.0%
!! AAAAAATAAGCAATTGGAAA+GGG - chr5_2:3530786-3530805 Msa0750100:intron 20.0%
!!! TTCTTTTCAATTTTGTGAAT+CGG + chr5_2:3530862-3530881 None:intergenic 20.0%
!! ATATATATATCTCTTCTTTG+TGG - chr5_2:3531119-3531138 Msa0750100:intron 20.0%
!! AAGTTATTTAACGATAATCT+AGG + chr5_2:3531177-3531196 None:intergenic 20.0%
!! AACTATGAAAAGTTTATAAG+GGG + chr5_2:3531363-3531382 None:intergenic 20.0%
!! TATTAACTCAAAGTCTATTA+TGG - chr5_2:3531630-3531649 Msa0750100:CDS 20.0%
!! ATACAATACAATACAATACA+TGG + chr5_2:3531864-3531883 None:intergenic 20.0%
!! TGTATTGTATTGTATTTACA+TGG - chr5_2:3531879-3531898 Msa0750100:five_prime_UTR 20.0%
!!! AATTGCGTGATTTTGATTTT+AGG - chr5_2:3527135-3527154 Msa0750100:CDS 25.0%
!!! ATTGCGTGATTTTGATTTTA+GGG - chr5_2:3527136-3527155 Msa0750100:CDS 25.0%
!!! TATTGAAGGATGGATTATTT+TGG - chr5_2:3527193-3527212 Msa0750100:intron 25.0%
!!! GTATAGATTGACTAGTTTTA+TGG - chr5_2:3527410-3527429 Msa0750100:intron 25.0%
!! TTTGAAGTAGGAAATGTATA+TGG - chr5_2:3527468-3527487 Msa0750100:intron 25.0%
! GTGTATTAATCTATGTTGTT+GGG + chr5_2:3527701-3527720 None:intergenic 25.0%
! AGTGTATTAATCTATGTTGT+TGG + chr5_2:3527702-3527721 None:intergenic 25.0%
! AAACAAAACCCTCATAATTT+GGG + chr5_2:3527828-3527847 None:intergenic 25.0%
! AAAACAAAACCCTCATAATT+TGG + chr5_2:3527829-3527848 None:intergenic 25.0%
! TTACCATTAATCAATCACTT+AGG + chr5_2:3528262-3528281 None:intergenic 25.0%
! CAGAAGGTTAACAATAAAAA+AGG + chr5_2:3528300-3528319 None:intergenic 25.0%
!!! CTTTTTTATTGTTAACCTTC+TGG - chr5_2:3528298-3528317 Msa0750100:intron 25.0%
!! TGAATCAGAAGATCTATTTT+CGG - chr5_2:3528370-3528389 Msa0750100:intron 25.0%
! TCATGACTTGAATTATTTGA+AGG + chr5_2:3528503-3528522 None:intergenic 25.0%
! AATTCAAGTCATGAATCAAA+TGG - chr5_2:3528509-3528528 Msa0750100:intron 25.0%
! GTGTATCATTGTATCTATAT+GGG + chr5_2:3528655-3528674 None:intergenic 25.0%
! TGTGTATCATTGTATCTATA+TGG + chr5_2:3528656-3528675 None:intergenic 25.0%
!!! TTGATTTTTAAAGGATGTAG+TGG - chr5_2:3529098-3529117 Msa0750100:intron 25.0%
!! CTACTTGTAATTTTGTAAAC+AGG - chr5_2:3529287-3529306 Msa0750100:intron 25.0%
! ATGATGTATGAACATAGAAA+CGG + chr5_2:3529347-3529366 None:intergenic 25.0%
! CTAAATAAAGTTACAGGAAA+AGG + chr5_2:3529414-3529433 None:intergenic 25.0%
! AAGTTGCTAAATAAAGTTAC+AGG + chr5_2:3529420-3529439 None:intergenic 25.0%
! CAAATCTTCACATGATAAAA+TGG + chr5_2:3529462-3529481 None:intergenic 25.0%
!! CATTTTATCATGTGAAGATT+TGG - chr5_2:3529460-3529479 Msa0750100:intron 25.0%
!!! CTGATAAGCATTTTGATTTT+AGG - chr5_2:3529491-3529510 Msa0750100:intron 25.0%
! AATGCAATAGAGAATTTGAA+TGG - chr5_2:3529555-3529574 Msa0750100:intron 25.0%
!! ACAAACCATTTATGTTGATT+GGG - chr5_2:3529593-3529612 Msa0750100:intron 25.0%
! TGTGATAACAAATCATAATG+TGG + chr5_2:3529842-3529861 None:intergenic 25.0%
! AAATTCCATAGTAAGAAAAG+TGG + chr5_2:3529975-3529994 None:intergenic 25.0%
!! GTTTTTCCACGTTTAAAAAT+TGG - chr5_2:3530567-3530586 Msa0750100:intron 25.0%
!! TATGTTCCAATTTTTAAACG+TGG + chr5_2:3530576-3530595 None:intergenic 25.0%
!! GAATGTTTTCATAGTTACTT+TGG + chr5_2:3530614-3530633 None:intergenic 25.0%
! CAAAAAATAAGCAATTGGAA+AGG - chr5_2:3530785-3530804 Msa0750100:intron 25.0%
! AACCATTGGATCATAATATA+CGG + chr5_2:3531006-3531025 None:intergenic 25.0%
! TGGATTGAAAAATGAAGATA+TGG - chr5_2:3531143-3531162 Msa0750100:intron 25.0%
! AATCCATACATACAATGAAA+CGG + chr5_2:3531218-3531237 None:intergenic 25.0%
! TAGTTTAGCATTTGAATGTT+TGG - chr5_2:3531378-3531397 Msa0750100:intron 25.0%
! TCAAAGTCTATTATGGTTTA+TGG - chr5_2:3531637-3531656 Msa0750100:CDS 25.0%
GTAGTTCAATTCAACCTATA+GGG + chr5_2:3526790-3526809 None:intergenic 30.0%
! TTTTTGTAGCTATTGAAGGA+TGG - chr5_2:3527183-3527202 Msa0750100:intron 30.0%
!!! GATAGAAAGTGTTTTGAAGT+AGG - chr5_2:3527456-3527475 Msa0750100:intron 30.0%
AAGTAGGAAATGTATATGGA+CGG - chr5_2:3527472-3527491 Msa0750100:intron 30.0%
! TAATCTAAGGGTATGATTGT+AGG - chr5_2:3527502-3527521 Msa0750100:intron 30.0%
! AATCTAAGGGTATGATTGTA+GGG - chr5_2:3527503-3527522 Msa0750100:intron 30.0%
ATTAATCTATGTTGTTGGGA+GGG + chr5_2:3527697-3527716 None:intergenic 30.0%
TATTAATCTATGTTGTTGGG+AGG + chr5_2:3527698-3527717 None:intergenic 30.0%
AGAACTCAAAATTGTATTCG+AGG + chr5_2:3527804-3527823 None:intergenic 30.0%
AACAAAACCCTCATAATTTG+GGG + chr5_2:3527827-3527846 None:intergenic 30.0%
TGGATGAAATAGAAGACATT+GGG - chr5_2:3528050-3528069 Msa0750100:intron 30.0%
AATACAAAATCTCCCTCATT+TGG - chr5_2:3528106-3528125 Msa0750100:intron 30.0%
ATACAAAATCTCCCTCATTT+GGG - chr5_2:3528107-3528126 Msa0750100:intron 30.0%
TTGGGAGTTTGAGAAATATA+TGG + chr5_2:3528233-3528252 None:intergenic 30.0%
AAGCCTAAGTGATTGATTAA+TGG - chr5_2:3528256-3528275 Msa0750100:intron 30.0%
! AAAATTTGATAACCATGCTC+CGG + chr5_2:3528351-3528370 None:intergenic 30.0%
CGATTCTCATTTCATTCTAA+TGG + chr5_2:3528599-3528618 None:intergenic 30.0%
!! TGAGAATCGTTTTAGTGAAT+TGG - chr5_2:3528610-3528629 Msa0750100:intron 30.0%
!! GAGAATCGTTTTAGTGAATT+GGG - chr5_2:3528611-3528630 Msa0750100:intron 30.0%
TGAGATGATAACTTCAGTTA+AGG + chr5_2:3528847-3528866 None:intergenic 30.0%
CACAAACCATTTATGTTGAT+TGG - chr5_2:3529592-3529611 Msa0750100:intron 30.0%
! AACAAAGTTCCATGAAGTTT+TGG - chr5_2:3529722-3529741 Msa0750100:intron 30.0%
CAATGACTTGACTATAAACA+TGG + chr5_2:3529868-3529887 None:intergenic 30.0%
CATGTTTATAGTCAAGTCAT+TGG - chr5_2:3529866-3529885 Msa0750100:intron 30.0%
TATTTGCCAATAGTGTTTGT+TGG - chr5_2:3529908-3529927 Msa0750100:intron 30.0%
AGAAAAGTGGATGAGATAAA+AGG + chr5_2:3529962-3529981 None:intergenic 30.0%
! ATTCAACTACATAACTTGTG+TGG - chr5_2:3530200-3530219 Msa0750100:intron 30.0%
! GTTTTACAAACTTTCAAGAG+TGG + chr5_2:3530263-3530282 None:intergenic 30.0%
AACCGTTGGATCAAAATATA+CGG - chr5_2:3530375-3530394 Msa0750100:intron 30.0%
AGATTAGAGTCCAATTAGAA+AGG - chr5_2:3530401-3530420 Msa0750100:intron 30.0%
TTCTGATTATTTAGATTCGC+AGG + chr5_2:3530506-3530525 None:intergenic 30.0%
GATGATTGATGTAAAGTTTG+AGG - chr5_2:3530723-3530742 Msa0750100:intron 30.0%
!! GTGTTCGGATTTAAGTTTTA+TGG + chr5_2:3530840-3530859 None:intergenic 30.0%
GAGGATATAATATGAACCAT+TGG + chr5_2:3531020-3531039 None:intergenic 30.0%
ATATATCTCTTCTTTGTGGA+TGG - chr5_2:3531123-3531142 Msa0750100:intron 30.0%
ATCCATACATACAATGAAAC+GGG + chr5_2:3531217-3531236 None:intergenic 30.0%
TTGTGAGTTTGTCAAAATCA+CGG + chr5_2:3531274-3531293 None:intergenic 30.0%
TTAGCATTGCTTAAACACAA+TGG + chr5_2:3531319-3531338 None:intergenic 30.0%
AAAAGTTTATAAGGGGAAGA+AGG + chr5_2:3531356-3531375 None:intergenic 30.0%
! AAAATACATATCGGTTGTTG+AGG - chr5_2:3531578-3531597 Msa0750100:CDS 30.0%
TATGTAATGACATTGTGTTG+AGG - chr5_2:3531717-3531736 Msa0750100:exon 30.0%
! GTTTCTTTTTCTCTCAATAG+AGG - chr5_2:3531807-3531826 Msa0750100:five_prime_UTR 30.0%
CAATACAATACAATACATGG+TGG + chr5_2:3531861-3531880 None:intergenic 30.0%
ATTAGAATTGGGAACCCTAT+AGG - chr5_2:3526773-3526792 Msa0750100:three_prime_UTR 35.0%
GGTAGTTCAATTCAACCTAT+AGG + chr5_2:3526791-3526810 None:intergenic 35.0%
!!! ACCTTTGGTTTTTTTGGGAA+CGG + chr5_2:3526979-3526998 None:intergenic 35.0%
!!! GCTGTTTTTGTAGCTATTGA+AGG - chr5_2:3527179-3527198 Msa0750100:intron 35.0%
!! GATGATTTGCAGAATGCTTT+TGG - chr5_2:3527245-3527264 Msa0750100:intron 35.0%
! CAGAATGCTTTTGGTGAATA+TGG - chr5_2:3527254-3527273 Msa0750100:intron 35.0%
ACTAGTCAATCTATACGAGT+GGG + chr5_2:3527406-3527425 None:intergenic 35.0%
AACTAGTCAATCTATACGAG+TGG + chr5_2:3527407-3527426 None:intergenic 35.0%
AGTAGGAAATGTATATGGAC+GGG - chr5_2:3527473-3527492 Msa0750100:intron 35.0%
AAATGTATATGGACGGGTAA+TGG - chr5_2:3527479-3527498 Msa0750100:intron 35.0%
!!! TATGATTGTAGGGTTTTGGA+GGG - chr5_2:3527513-3527532 Msa0750100:intron 35.0%
TTAATCTATGTTGTTGGGAG+GGG + chr5_2:3527696-3527715 None:intergenic 35.0%
CTCAAAATTGTATTCGAGGA+GGG + chr5_2:3527800-3527819 None:intergenic 35.0%
ACTCAAAATTGTATTCGAGG+AGG + chr5_2:3527801-3527820 None:intergenic 35.0%
AAAAAAAAGGAAGGAGCAAG+TGG + chr5_2:3528030-3528049 None:intergenic 35.0%
! TCTTTGTTTGGGAGTTTAGA+GGG + chr5_2:3527955-3527974 None:intergenic 35.0%
! CTAAGGCTTTGTCTTTGTTT+GGG + chr5_2:3527966-3527985 None:intergenic 35.0%
AAAAAAAAGGAAGGAGCAAG+TGG - chr5_2:3528030-3528049 Msa0750100:intron 35.0%
GTGGATGAAATAGAAGACAT+TGG - chr5_2:3528049-3528068 Msa0750100:intron 35.0%
ATGAAATAGAAGACATTGGG+AGG - chr5_2:3528053-3528072 Msa0750100:intron 35.0%
TGAAATAGAAGACATTGGGA+GGG - chr5_2:3528054-3528073 Msa0750100:intron 35.0%
TACAAAATCTCCCTCATTTG+GGG - chr5_2:3528108-3528127 Msa0750100:intron 35.0%
!! CAATCACTTAGGCTTTGTTT+GGG + chr5_2:3528251-3528270 None:intergenic 35.0%
!! TCAATCACTTAGGCTTTGTT+TGG + chr5_2:3528252-3528271 None:intergenic 35.0%
! AATATCAAGGTACCTTTCCT+CGG + chr5_2:3528328-3528347 None:intergenic 35.0%
! GAATTATAGCCAGCTTTTGT+CGG + chr5_2:3528557-3528576 None:intergenic 35.0%
TAGTGAATTGGGATTCAAGA+TGG - chr5_2:3528622-3528641 Msa0750100:intron 35.0%
AGTGAATTGGGATTCAAGAT+GGG - chr5_2:3528623-3528642 Msa0750100:intron 35.0%
ACAATGATACACACTAACTG+AGG - chr5_2:3528663-3528682 Msa0750100:intron 35.0%
ACACTAACTGAGGTTATTGA+TGG - chr5_2:3528673-3528692 Msa0750100:intron 35.0%
CACTAACTGAGGTTATTGAT+GGG - chr5_2:3528674-3528693 Msa0750100:intron 35.0%
AAACTCCACATCATGGTTAT+CGG + chr5_2:3528748-3528767 None:intergenic 35.0%
! CATATCTTTTCACCGTTAGT+TGG - chr5_2:3528865-3528884 Msa0750100:intron 35.0%
GGAAAGTTAAGTCCAACTAA+CGG + chr5_2:3528880-3528899 None:intergenic 35.0%
GAGATGGCAGAAAATTTACT+TGG + chr5_2:3529325-3529344 None:intergenic 35.0%
TATGAACATAGAAACGGAGA+TGG + chr5_2:3529341-3529360 None:intergenic 35.0%
GAAAGCCCAATCAACATAAA+TGG + chr5_2:3529601-3529620 None:intergenic 35.0%
! CTTCTAACTGACTCATTGAT+AGG + chr5_2:3529633-3529652 None:intergenic 35.0%
ATGAGTCAGTTAGAAGAAAC+AGG - chr5_2:3529637-3529656 Msa0750100:intron 35.0%
!!! AGTTCCATGAAGTTTTGGTT+TGG - chr5_2:3529727-3529746 Msa0750100:intron 35.0%
!!! GTTCCATGAAGTTTTGGTTT+GGG - chr5_2:3529728-3529747 Msa0750100:intron 35.0%
AAACCCAAACCAAAACTTCA+TGG + chr5_2:3529734-3529753 None:intergenic 35.0%
!! TGAGTCTTATTCCACAAAGT+GGG - chr5_2:3529797-3529816 Msa0750100:intron 35.0%
!! CTCATCCACTTTTCTTACTA+TGG - chr5_2:3529967-3529986 Msa0750100:intron 35.0%
AAATCTCGACTTAGATGGTT+TGG + chr5_2:3530019-3530038 None:intergenic 35.0%
TGATGAAATCTCGACTTAGA+TGG + chr5_2:3530024-3530043 None:intergenic 35.0%
TGATAGCATTAGAGAGAGTT+GGG + chr5_2:3530068-3530087 None:intergenic 35.0%
ATGATAGCATTAGAGAGAGT+TGG + chr5_2:3530069-3530088 None:intergenic 35.0%
ATGTGATGAGAATTGAGTGT+TGG + chr5_2:3530126-3530145 None:intergenic 35.0%
!! CATCTTCACTTAGTTTGTGT+TGG - chr5_2:3530143-3530162 Msa0750100:intron 35.0%
TGTTATAATGAGAGGATGAG+AGG - chr5_2:3530342-3530361 Msa0750100:intron 35.0%
GAGGATATAATATGAACCGT+TGG - chr5_2:3530361-3530380 Msa0750100:intron 35.0%
!!! GACCGTATATTTTGATCCAA+CGG + chr5_2:3530380-3530399 None:intergenic 35.0%
ACTTCATAGTCAGAAGAGAA+GGG + chr5_2:3530473-3530492 None:intergenic 35.0%
TAAACGTGGAAAAACATACG+TGG + chr5_2:3530562-3530581 None:intergenic 35.0%
AAATAAGCAATTGGAAAGGG+TGG - chr5_2:3530789-3530808 Msa0750100:intron 35.0%
AATAAGCAATTGGAAAGGGT+GGG - chr5_2:3530790-3530809 Msa0750100:intron 35.0%
GTGTCATATATATGAAGCAG+TGG - chr5_2:3530814-3530833 Msa0750100:intron 35.0%
!! CAATTTTGTGAATCGGTGTT+CGG + chr5_2:3530855-3530874 None:intergenic 35.0%
! CCTTTCTTATTTCTTCTTCC+TGG + chr5_2:3530919-3530938 None:intergenic 35.0%
CCAGGAAGAAGAAATAAGAA+AGG - chr5_2:3530916-3530935 Msa0750100:intron 35.0%
AGAAATAAGAAAGGCCAAAG+AGG - chr5_2:3530925-3530944 Msa0750100:intron 35.0%
AGATTAGAGTCCAGTTAGAA+AGG + chr5_2:3530980-3530999 None:intergenic 35.0%
GACCGTATATTATGATCCAA+TGG - chr5_2:3531001-3531020 Msa0750100:intron 35.0%
TGTTATAATGAGAGGATGAG+AGG + chr5_2:3530342-3530361 None:intergenic 35.0%
TCCATACATACAATGAAACG+GGG + chr5_2:3531216-3531235 None:intergenic 35.0%
CTTAAACACAATGGCATGTT+TGG + chr5_2:3531310-3531329 None:intergenic 35.0%
TATACATGATGTCAGTTGTG+TGG - chr5_2:3531478-3531497 Msa0750100:CDS 35.0%
TTGTGTGGAACTTAAATGAG+CGG - chr5_2:3531493-3531512 Msa0750100:CDS 35.0%
GATTTCTATTTGTCCAGTTG+TGG - chr5_2:3531519-3531538 Msa0750100:CDS 35.0%
! CCGATATGTATTTTGTCTGA+CGG + chr5_2:3531572-3531591 None:intergenic 35.0%
CCGTCAGACAAAATACATAT+CGG - chr5_2:3531569-3531588 Msa0750100:CDS 35.0%
! GAGGAAGATAGTATCTCTTT+TGG - chr5_2:3531736-3531755 Msa0750100:five_prime_UTR 35.0%
ATGGTGGCAAAGAAAAAGAT+GGG + chr5_2:3531845-3531864 None:intergenic 35.0%
!!! TTTTTTGGGAACGGAAGTGA+TGG + chr5_2:3526970-3526989 None:intergenic 40.0%
TCCGTTCCCAAAAAAACCAA+AGG - chr5_2:3526975-3526994 Msa0750100:three_prime_UTR 40.0%
AGAGTTACGGTTAGAGGAAT+CGG + chr5_2:3527021-3527040 None:intergenic 40.0%
! TACAAACATCTTTGAGGACC+AGG + chr5_2:3527089-3527108 None:intergenic 40.0%
TGGGGATACAAACATCTTTG+AGG + chr5_2:3527095-3527114 None:intergenic 40.0%
!!! GGATGGATTATTTTGGTGAC+TGG - chr5_2:3527200-3527219 Msa0750100:intron 40.0%
GCACCTTAACAAAACCAGTA+CGG + chr5_2:3527313-3527332 None:intergenic 40.0%
! GACGGGTAATGGTAATCTAA+GGG - chr5_2:3527490-3527509 Msa0750100:intron 40.0%
! AGGGTATGATTGTAGGGTTT+TGG - chr5_2:3527509-3527528 Msa0750100:intron 40.0%
!! GTATGATTGTAGGGTTTTGG+AGG - chr5_2:3527512-3527531 Msa0750100:intron 40.0%
!!! ATGATTGTAGGGTTTTGGAG+GGG - chr5_2:3527514-3527533 Msa0750100:intron 40.0%
!!! TATTCGAGGAGGGTTTTGAA+GGG + chr5_2:3527790-3527809 None:intergenic 40.0%
TGAGTTCTCCCCAAATTATG+AGG - chr5_2:3527816-3527835 Msa0750100:intron 40.0%
GAGTTCTCCCCAAATTATGA+GGG - chr5_2:3527817-3527836 Msa0750100:intron 40.0%
GAAATAGAGGAGTTTGAGAG+GGG + chr5_2:3527881-3527900 None:intergenic 40.0%
GGAAATAGAGGAGTTTGAGA+GGG + chr5_2:3527882-3527901 None:intergenic 40.0%
AGGAAATAGAGGAGTTTGAG+AGG + chr5_2:3527883-3527902 None:intergenic 40.0%
! GTCTTTGTTTGGGAGTTTAG+AGG + chr5_2:3527956-3527975 None:intergenic 40.0%
! CCTAAGGCTTTGTCTTTGTT+TGG + chr5_2:3527967-3527986 None:intergenic 40.0%
CCAAACAAAGACAAAGCCTT+AGG - chr5_2:3527964-3527983 Msa0750100:intron 40.0%
!! ACAAAGCCTTAGGCTTTGTT+TGG - chr5_2:3527974-3527993 Msa0750100:intron 40.0%
!! CAAAGCCTTAGGCTTTGTTT+GGG - chr5_2:3527975-3527994 Msa0750100:intron 40.0%
AAACTCCCAAACAAAGCCTA+AGG + chr5_2:3528243-3528262 None:intergenic 40.0%
!! GCTTTGTTTGGGAGTTTAGA+GGG - chr5_2:3527986-3528005 Msa0750100:intron 40.0%
GAAATAGAAGACATTGGGAG+GGG - chr5_2:3528055-3528074 Msa0750100:intron 40.0%
ACAAAATCTCCCTCATTTGG+GGG - chr5_2:3528109-3528128 Msa0750100:intron 40.0%
!!! TTTTGAGTTCCCCCAAATGA+GGG + chr5_2:3528121-3528140 None:intergenic 40.0%
!!! TTTTTGAGTTCCCCCAAATG+AGG + chr5_2:3528122-3528141 None:intergenic 40.0%
! ATATCAAGGTACCTTTCCTC+GGG + chr5_2:3528327-3528346 None:intergenic 40.0%
!! GGAAAGGTACCTTGATATTC+CGG - chr5_2:3528329-3528348 Msa0750100:intron 40.0%
TCATGAATCAAATGGCAAGC+TGG - chr5_2:3528517-3528536 Msa0750100:intron 40.0%
AGATACCGATAACCATGATG+TGG - chr5_2:3528740-3528759 Msa0750100:intron 40.0%
CTCAATCAAACTCCACATCA+TGG + chr5_2:3528755-3528774 None:intergenic 40.0%
TGATGTGGAGTTTGATTGAG+AGG - chr5_2:3528755-3528774 Msa0750100:intron 40.0%
ATTGAGAGGTAGGTAAAGTG+AGG - chr5_2:3528769-3528788 Msa0750100:intron 40.0%
TCCATTTCATGTCTCAGTCA+TGG - chr5_2:3528897-3528916 Msa0750100:intron 40.0%
! TTGACCTCAAGCTGTTACTT+TGG - chr5_2:3528953-3528972 Msa0750100:CDS 40.0%
!! TGACCTCAAGCTGTTACTTT+GGG - chr5_2:3528954-3528973 Msa0750100:CDS 40.0%
! CACACAGTTACTTGTTAGGA+AGG + chr5_2:3529138-3529157 None:intergenic 40.0%
CCTACACACAGTTACTTGTT+AGG + chr5_2:3529142-3529161 None:intergenic 40.0%
CCTAACAAGTAACTGTGTGT+AGG - chr5_2:3529139-3529158 Msa0750100:intron 40.0%
CAGTTTCAGAAACTGCAGAT+TGG - chr5_2:3529384-3529403 Msa0750100:intron 40.0%
GACTCAGTAGTTGCTGTAAT+AGG + chr5_2:3529783-3529802 None:intergenic 40.0%
!! CTGAGTCTTATTCCACAAAG+TGG - chr5_2:3529796-3529815 Msa0750100:intron 40.0%
!! GAGTCTTATTCCACAAAGTG+GGG - chr5_2:3529798-3529817 Msa0750100:intron 40.0%
TTCCATTGCCTTTCGCAATT+CGG - chr5_2:3529933-3529952 Msa0750100:intron 40.0%
! TTAGATGGTTTGGACATGTG+TGG + chr5_2:3530009-3530028 None:intergenic 40.0%
ACGTGTGGAAAGACTAGAAA+GGG + chr5_2:3530103-3530122 None:intergenic 40.0%
!! TTCTTCGTCGTTTTCTACGA+TGG - chr5_2:3530168-3530187 Msa0750100:intron 40.0%
TTCAAGAGTGGAGTATGTGT+TGG + chr5_2:3530251-3530270 None:intergenic 40.0%
! TAGAGGGTGTATCAAATGAG+AGG - chr5_2:3530317-3530336 Msa0750100:intron 40.0%
!! GAGAGGAGTGTTATAATGAG+AGG - chr5_2:3530334-3530353 Msa0750100:intron 40.0%
GTGTGTTCTGCCTTTCTAAT+TGG + chr5_2:3530414-3530433 None:intergenic 40.0%
GACTTCATAGTCAGAAGAGA+AGG + chr5_2:3530474-3530493 None:intergenic 40.0%
!! AAAACATACGTGGCTTGGTT+GGG + chr5_2:3530552-3530571 None:intergenic 40.0%
!! AAAAACATACGTGGCTTGGT+TGG + chr5_2:3530553-3530572 None:intergenic 40.0%
CATATATGCTTGTGAGAGAG+AGG - chr5_2:3530885-3530904 Msa0750100:intron 40.0%
!! GAGAGGAGTGTTATAATGAG+AGG + chr5_2:3530334-3530353 None:intergenic 40.0%
! TAGAGGGTGTATCAAATGAG+AGG + chr5_2:3530317-3530336 None:intergenic 40.0%
AATGAAACGGGGTTGAAAGA+TGG + chr5_2:3531205-3531224 None:intergenic 40.0%
ACCCCGTTTCATTGTATGTA+TGG - chr5_2:3531212-3531231 Msa0750100:intron 40.0%
CAATGGCATGTTTGGTAGAT+TGG + chr5_2:3531302-3531321 None:intergenic 40.0%
TTTCAATATCTCCTCCTAGG+AGG + chr5_2:3531444-3531463 None:intergenic 40.0%
TCCTAGGAGGAGATATTGAA+AGG - chr5_2:3531443-3531462 Msa0750100:intron 40.0%
CCTAGGAGGAGATATTGAAA+GGG - chr5_2:3531444-3531463 Msa0750100:intron 40.0%
!! TAGGAAAAAGCATCCACAAC+TGG + chr5_2:3531535-3531554 None:intergenic 40.0%
CATGGTGGCAAAGAAAAAGA+TGG + chr5_2:3531846-3531865 None:intergenic 40.0%
GAGAGGAGTGAGTGTATGAA+GGG + chr5_2:3526812-3526831 None:intergenic 45.0%
AGAGAGGAGTGAGTGTATGA+AGG + chr5_2:3526813-3526832 None:intergenic 45.0%
GAAATCCAAAGCTTCTCCGT+CGG + chr5_2:3526865-3526884 None:intergenic 45.0%
TCCATCAAGTCATCTTCCTC+TGG + chr5_2:3526891-3526910 None:intergenic 45.0%
! GATGACTTGATGGACGAAGA+AGG - chr5_2:3526897-3526916 Msa0750100:three_prime_UTR 45.0%
! GATTTGAGTTTGGGATGTGG+AGG + chr5_2:3526945-3526964 None:intergenic 45.0%
!! GTGATGGCGGATTTGAGTTT+GGG + chr5_2:3526954-3526973 None:intergenic 45.0%
!! AGTGATGGCGGATTTGAGTT+TGG + chr5_2:3526955-3526974 None:intergenic 45.0%
!!! CCGCGACCTTTGGTTTTTTT+GGG + chr5_2:3526984-3527003 None:intergenic 45.0%
CCCAAAAAAACCAAAGGTCG+CGG - chr5_2:3526981-3527000 Msa0750100:three_prime_UTR 45.0%
!!! ACCGCGACCTTTGGTTTTTT+TGG + chr5_2:3526985-3527004 None:intergenic 45.0%
TAGAGGAATCGGAATCCTGA+CGG + chr5_2:3527010-3527029 None:intergenic 45.0%
AATCAGCGAGACGAGAGTTA+CGG + chr5_2:3527034-3527053 None:intergenic 45.0%
!! AGCAGTGAGAGTATCGAAAC+CGG + chr5_2:3527057-3527076 None:intergenic 45.0%
TTTCGATACTCTCACTGCTG+AGG - chr5_2:3527058-3527077 Msa0750100:three_prime_UTR 45.0%
TTCGATACTCTCACTGCTGA+GGG - chr5_2:3527059-3527078 Msa0750100:three_prime_UTR 45.0%
! TTTGGTGACTGGTGTACATG+AGG - chr5_2:3527211-3527230 Msa0750100:intron 45.0%
TTGAATCTTGATCGCCGTAC+TGG - chr5_2:3527296-3527315 Msa0750100:intron 45.0%
!!! TCGCCGTACTGGTTTTGTTA+AGG - chr5_2:3527307-3527326 Msa0750100:intron 45.0%
! GGACGGGTAATGGTAATCTA+AGG - chr5_2:3527489-3527508 Msa0750100:intron 45.0%
! TATGTTGTTGGGAGGGGTTT+TGG + chr5_2:3527690-3527709 None:intergenic 45.0%
!!! GGGTTTTGAAGGGATTTGGA+AGG + chr5_2:3527780-3527799 None:intergenic 45.0%
!!! AGGAGGGTTTTGAAGGGATT+TGG + chr5_2:3527784-3527803 None:intergenic 45.0%
!! GTATTCGAGGAGGGTTTTGA+AGG + chr5_2:3527791-3527810 None:intergenic 45.0%
AAAAAGGAAGGAGCAAGTGG+AGG + chr5_2:3528033-3528052 None:intergenic 45.0%
TTTGGGAGTTTAGAGGGCAA+GGG + chr5_2:3527949-3527968 None:intergenic 45.0%
!! GGCTTTGTTTGGGAGTTTAG+AGG - chr5_2:3527985-3528004 Msa0750100:intron 45.0%
GGAGTTTAGAGGGAAGTGAA+GGG - chr5_2:3527996-3528015 Msa0750100:intron 45.0%
TACCTTGATATTCCGGAGCA+TGG - chr5_2:3528336-3528355 Msa0750100:intron 45.0%
AACCATGCTCCGGAATATCA+AGG + chr5_2:3528341-3528360 None:intergenic 45.0%
CAATGTTGACCGACAAAAGC+TGG - chr5_2:3528545-3528564 Msa0750100:intron 45.0%
GTGGAGTTTGATTGAGAGGT+AGG - chr5_2:3528759-3528778 Msa0750100:intron 45.0%
TCCCATGCTGGAACAATCTT+CGG + chr5_2:3528795-3528814 None:intergenic 45.0%
TTCCAGCATGGGATTGAACT+TGG - chr5_2:3528802-3528821 Msa0750100:intron 45.0%
TCCAGCATGGGATTGAACTT+GGG - chr5_2:3528803-3528822 Msa0750100:intron 45.0%
GCCATGACTGAGACATGAAA+TGG + chr5_2:3528901-3528920 None:intergenic 45.0%
!! GACCTCAAGCTGTTACTTTG+GGG - chr5_2:3528955-3528974 Msa0750100:CDS 45.0%
AACCCCAAAGTAACAGCTTG+AGG + chr5_2:3528960-3528979 None:intergenic 45.0%
!! CTGTTACTTTGGGGTTCAGA+TGG - chr5_2:3528964-3528983 Msa0750100:CDS 45.0%
TGAGATCAAAGCAGCGAAAG+TGG + chr5_2:3529222-3529241 None:intergenic 45.0%
GATTGAATATGAGCGCTCTG+AGG - chr5_2:3529524-3529543 Msa0750100:intron 45.0%
CTTATTCCACAAAGTGGGGT+TGG - chr5_2:3529802-3529821 Msa0750100:intron 45.0%
GGAAGGCCAACAAACACTAT+TGG + chr5_2:3529917-3529936 None:intergenic 45.0%
GAATTGCGAAAGGCAATGGA+AGG + chr5_2:3529934-3529953 None:intergenic 45.0%
AACCGAATTGCGAAAGGCAA+TGG + chr5_2:3529938-3529957 None:intergenic 45.0%
AAAGGCAACCGAATTGCGAA+AGG + chr5_2:3529944-3529963 None:intergenic 45.0%
CATTAGAGAGAGTTGGGTAG+AGG + chr5_2:3530062-3530081 None:intergenic 45.0%
GTGGAAAGACTAGAAAGGGT+AGG + chr5_2:3530099-3530118 None:intergenic 45.0%
GACGTGTGGAAAGACTAGAA+AGG + chr5_2:3530104-3530123 None:intergenic 45.0%
!! AGAATTGAGTGTTGGACGTG+TGG + chr5_2:3530118-3530137 None:intergenic 45.0%
GTGGAAAAACATACGTGGCT+TGG + chr5_2:3530557-3530576 None:intergenic 45.0%
TATGCTTGTGAGAGAGAGGA+AGG - chr5_2:3530889-3530908 Msa0750100:intron 45.0%
AGAGTCCAGTTAGAAAGGCA+CGG + chr5_2:3530975-3530994 None:intergenic 45.0%
! TGACATTTTGCAGACCTCAG+CGG - chr5_2:3531406-3531425 Msa0750100:intron 45.0%
CCCTTTCAATATCTCCTCCT+AGG + chr5_2:3531447-3531466 None:intergenic 45.0%
GACGGAAGCTGCATAAGTAT+AGG + chr5_2:3531554-3531573 None:intergenic 45.0%
GATTGCGTCTTGTGTGTGAT+GGG - chr5_2:3531758-3531777 Msa0750100:five_prime_UTR 45.0%
GTGGCAAAGAAAAAGATGGG+AGG + chr5_2:3531842-3531861 None:intergenic 45.0%
!!! TGTATATAAATTTTATAAAA+TGG - chr5_2:3529005-3529024 Msa0750100:CDS 5.0%
!! AATATTTAAAAAATATTTAG+AGG + chr5_2:3529892-3529911 None:intergenic 5.0%
!! TTATATATATATATATATAG+AGG - chr5_2:3530300-3530319 Msa0750100:intron 5.0%
!! TATATATATATATATATAGA+GGG - chr5_2:3530301-3530320 Msa0750100:intron 5.0%
!! TATATATATATATATATAGA+GGG + chr5_2:3530301-3530320 None:intergenic 5.0%
!! ATATATATATATATATATAG+AGG + chr5_2:3531081-3531100 None:intergenic 5.0%
CATCGTCGCTGAATAGAGAG+AGG + chr5_2:3526829-3526848 None:intergenic 50.0%
CTCTATTCAGCGACGATGCA+AGG - chr5_2:3526831-3526850 Msa0750100:three_prime_UTR 50.0%
!! AGCTTTGGATTTCGAGCCAG+AGG - chr5_2:3526872-3526891 Msa0750100:three_prime_UTR 50.0%
GCCAGAGGAAGATGACTTGA+TGG - chr5_2:3526887-3526906 Msa0750100:three_prime_UTR 50.0%
! GCGGATTTGAGTTTGGGATG+TGG + chr5_2:3526948-3526967 None:intergenic 50.0%
TTTGGGAACGGAAGTGATGG+CGG + chr5_2:3526967-3526986 None:intergenic 50.0%
GAGACGAGAGTTACGGTTAG+AGG + chr5_2:3527027-3527046 None:intergenic 50.0%
!! AACTCTCGTCTCGCTGATTC+CGG - chr5_2:3527035-3527054 Msa0750100:three_prime_UTR 50.0%
!!! ATTGTAGGGTTTTGGAGGGG+AGG - chr5_2:3527517-3527536 Msa0750100:intron 50.0%
!!! TTGTAGGGTTTTGGAGGGGA+GGG - chr5_2:3527518-3527537 Msa0750100:intron 50.0%
TAGAGGAGTTTGAGAGGGGA+GGG + chr5_2:3527877-3527896 None:intergenic 50.0%
ATAGAGGAGTTTGAGAGGGG+AGG + chr5_2:3527878-3527897 None:intergenic 50.0%
GGAGCAAGTGGAGGAAATAG+AGG + chr5_2:3527894-3527913 None:intergenic 50.0%
GTTTGGGAGTTTAGAGGGCA+AGG + chr5_2:3527950-3527969 None:intergenic 50.0%
GGGAGTTTAGAGGGAAGTGA+AGG - chr5_2:3527995-3528014 Msa0750100:intron 50.0%
ATAGAAGACATTGGGAGGGG+AGG - chr5_2:3528058-3528077 Msa0750100:intron 50.0%
TAGAAGACATTGGGAGGGGA+GGG - chr5_2:3528059-3528078 Msa0750100:intron 50.0%
!! GTTAACCTTCTGGTTTCCCG+AGG - chr5_2:3528308-3528327 Msa0750100:intron 50.0%
GCCGAAGATTGTTCCAGCAT+GGG - chr5_2:3528791-3528810 Msa0750100:intron 50.0%
ACCCAAGTTCAATCCCATGC+TGG + chr5_2:3528807-3528826 None:intergenic 50.0%
GTTGATTGGGCTTTCAGCAG+TGG - chr5_2:3529606-3529625 Msa0750100:intron 50.0%
ATGTAGCCAACCCCACTTTG+TGG + chr5_2:3529811-3529830 None:intergenic 50.0%
!! ACAAAGTGGGGTTGGCTACA+TGG - chr5_2:3529810-3529829 Msa0750100:intron 50.0%
! GATGGTTTGGACATGTGTGG+AGG + chr5_2:3530006-3530025 None:intergenic 50.0%
GAGAGAGAGGAAGGAAATCC+AGG - chr5_2:3530898-3530917 Msa0750100:intron 50.0%
AGGAGCGACGCTGTTTGATT+AGG - chr5_2:3530945-3530964 Msa0750100:intron 50.0%
GGATTGCGTCTTGTGTGTGA+TGG - chr5_2:3531757-3531776 Msa0750100:five_prime_UTR 50.0%
ATCCAAAGCTTCTCCGTCGG+CGG + chr5_2:3526862-3526881 None:intergenic 55.0%
GGGATGTGGAGGAGAAGCTT+CGG + chr5_2:3526934-3526953 None:intergenic 55.0%
GATACTCTCACTGCTGAGGG+TGG - chr5_2:3527062-3527081 Msa0750100:three_prime_UTR 55.0%
!!! TGTAGGGTTTTGGAGGGGAG+GGG - chr5_2:3527519-3527538 Msa0750100:intron 55.0%
!! GTTGTTGGGAGGGGTTTTGG+AGG + chr5_2:3527687-3527706 None:intergenic 55.0%
TTTGAGAGGGGAGGGCTTTG+GGG + chr5_2:3527869-3527888 None:intergenic 55.0%
GTTTGAGAGGGGAGGGCTTT+GGG + chr5_2:3527870-3527889 None:intergenic 55.0%
AGTTTGAGAGGGGAGGGCTT+TGG + chr5_2:3527871-3527890 None:intergenic 55.0%
! TAGAGGGCAAGGGAGGGTTT+TGG + chr5_2:3527939-3527958 None:intergenic 55.0%
GGAGTTTAGAGGGCAAGGGA+GGG + chr5_2:3527945-3527964 None:intergenic 55.0%
! ATTGGGAGGGGAGGGCTTTT+GGG - chr5_2:3528067-3528086 Msa0750100:intron 55.0%
CCTTTCCTCGGGAAACCAGA+AGG + chr5_2:3528316-3528335 None:intergenic 55.0%
!! CCTTCTGGTTTCCCGAGGAA+AGG - chr5_2:3528313-3528332 Msa0750100:intron 55.0%
GGCCGAAGATTGTTCCAGCA+TGG - chr5_2:3528790-3528809 Msa0750100:intron 55.0%
! ATACTGCAGGGAGTGCAGTG+AGG + chr5_2:3529031-3529050 None:intergenic 55.0%
!! ATGAGCGCTCTGAGGAAGCT+CGG - chr5_2:3529532-3529551 Msa0750100:intron 55.0%
AAGGGCGAGCGAAGGAAGAT+GGG + chr5_2:3530455-3530474 None:intergenic 55.0%
!! CGTGGCTTGGTTGGGATTGT+TGG + chr5_2:3530544-3530563 None:intergenic 55.0%
CAAACAGCGTCGCTCCTCTT+TGG + chr5_2:3530942-3530961 None:intergenic 55.0%
GTGTGCCGTGCCTTTCTAAC+TGG - chr5_2:3530967-3530986 Msa0750100:intron 55.0%
CTGACGGAAACCGCGACCTT+TGG + chr5_2:3526994-3527013 None:intergenic 60.0%
CAAAGGTCGCGGTTTCCGTC+AGG - chr5_2:3526992-3527011 Msa0750100:three_prime_UTR 60.0%
!!! GTAGGGTTTTGGAGGGGAGG+GGG - chr5_2:3527520-3527539 Msa0750100:intron 60.0%
! TTGAGAGGGGAGGGCTTTGG+GGG + chr5_2:3527868-3527887 None:intergenic 60.0%
GGGAGTTTAGAGGGCAAGGG+AGG + chr5_2:3527946-3527965 None:intergenic 60.0%
! CATTGGGAGGGGAGGGCTTT+TGG - chr5_2:3528066-3528085 Msa0750100:intron 60.0%
! TTGGGAGGGGAGGGCTTTTG+GGG - chr5_2:3528068-3528087 Msa0750100:intron 60.0%
GAAGGGCGAGCGAAGGAAGA+TGG + chr5_2:3530456-3530475 None:intergenic 60.0%
CAGAAGAGAAGGGCGAGCGA+AGG + chr5_2:3530463-3530482 None:intergenic 60.0%
TCTCCTCCTAGGAGGACTCC+TGG + chr5_2:3531436-3531455 None:intergenic 60.0%
!! ATGCAAGGAAGCGCCGCCGA+CGG - chr5_2:3526846-3526865 Msa0750100:three_prime_UTR 65.0%
CTCACTGCTGAGGGTGGTCC+TGG - chr5_2:3527068-3527087 Msa0750100:three_prime_UTR 65.0%
!! TTTTGGAGGGGAGGGGGTGG+AGG - chr5_2:3527526-3527545 Msa0750100:intron 65.0%
!! TGAGAGGGGAGGGCTTTGGG+GGG + chr5_2:3527867-3527886 None:intergenic 65.0%
GCTCCAGGAGTCCTCCTAGG+AGG - chr5_2:3531430-3531449 Msa0750100:intron 65.0%
CGCCGCCGACGGAGAAGCTT+TGG - chr5_2:3526857-3526876 Msa0750100:three_prime_UTR 70.0%
!!! GGGTTTTGGAGGGGAGGGGG+TGG - chr5_2:3527523-3527542 Msa0750100:intron 70.0%
GGCGCTCCAGGAGTCCTCCT+AGG - chr5_2:3531427-3531446 Msa0750100:intron 70.0%
GCAGACCTCAGCGGCGCTCC+AGG - chr5_2:3531415-3531434 Msa0750100:intron 75.0%
!! GGACTCCTGGAGCGCCGCTG+AGG + chr5_2:3531423-3531442 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 3526656 3531921 3526656 ID=Msa0750100;Name=Msa0750100
chr5_2 mRNA 3526656 3531921 3526656 ID=Msa0750100-mRNA-1;Parent=Msa0750100;Name=Msa0750100-mRNA-1;_AED=0.03;_eAED=0.03;_QI=168|1|1|1|0.75|0.6|5|460|193
chr5_2 exon 3526656 3527158 3526656 ID=Msa0750100-mRNA-1:exon:1308;Parent=Msa0750100-mRNA-1
chr5_2 exon 3528919 3529064 3528919 ID=Msa0750100-mRNA-1:exon:1307;Parent=Msa0750100-mRNA-1
chr5_2 exon 3531249 3531385 3531249 ID=Msa0750100-mRNA-1:exon:1306;Parent=Msa0750100-mRNA-1
chr5_2 exon 3531476 3531847 3531476 ID=Msa0750100-mRNA-1:exon:1305;Parent=Msa0750100-mRNA-1
chr5_2 exon 3531870 3531921 3531870 ID=Msa0750100-mRNA-1:exon:1304;Parent=Msa0750100-mRNA-1
chr5_2 five_prime_UTR 3531870 3531921 3531870 ID=Msa0750100-mRNA-1:five_prime_utr;Parent=Msa0750100-mRNA-1
chr5_2 five_prime_UTR 3531732 3531847 3531732 ID=Msa0750100-mRNA-1:five_prime_utr;Parent=Msa0750100-mRNA-1
chr5_2 CDS 3531476 3531731 3531476 ID=Msa0750100-mRNA-1:cds;Parent=Msa0750100-mRNA-1
chr5_2 CDS 3531249 3531385 3531249 ID=Msa0750100-mRNA-1:cds;Parent=Msa0750100-mRNA-1
chr5_2 CDS 3528919 3529064 3528919 ID=Msa0750100-mRNA-1:cds;Parent=Msa0750100-mRNA-1
chr5_2 CDS 3527116 3527158 3527116 ID=Msa0750100-mRNA-1:cds;Parent=Msa0750100-mRNA-1
chr5_2 three_prime_UTR 3526656 3527115 3526656 ID=Msa0750100-mRNA-1:three_prime_utr;Parent=Msa0750100-mRNA-1
Gene Sequence

>Msa0750100

ATGCAAGGAAGCGCCGCCGACGGAGAAGCTTTGGATTTCGAGCCAGAGGAAGATGACTTGATGGACGAAGAAGGTGCTGTTGACGCCGAAGCTTCTCCTCCACATCCCAAACTCAAATCCGCCATCACTTCCGTTCCCAAAAAAACCAAAGGTCGCGGTTTCCGTCAGGATTCCGATTCCTCTAACCGTAACTCTCGTCTCGCTGATTCCGGTTTCGATACTCTCACTGCTGAGGGTGGTCCTGGTCCTCAAAGATCTATTGAAGGATGGATTATTTTGGTGACTGGTGTACATGAGGAAGCTCAAGATGATGATTTGCAGAATGCTTTTGGTGAATATGGTGATATTAAGAATCTTCACTTGAATCTTGATCGCCGTACTGGTTTTGTTAAGGGTTATGCACTGATTGAATATGAGCGCTCTGAGGAAGCTCGGAATGCAATAGAGAATTTGAATGGATCTGTGCTTCTCACACAAACCATTTATGTTGATTGGGCTTTCAGCAGTGGACCTATCAATGAGTCAGTTAGAAGAAACAGACCTCAGCGGCGCTCCAGGAGTCCTCCTAGGAGGAGATATTGA
Protein sequence

>Msa0750100

MQGSAADGEALDFEPEEDDLMDEEGAVDAEASPPHPKLKSAITSVPKKTKGRGFRQDSDSSNRNSRLADSGFDTLTAEGGPGPQRSIEGWIILVTGVHEEAQDDDLQNAFGEYGDIKNLHLNLDRRTGFVKGYALIEYERSEEARNAIENLNGSVLLTQTIYVDWAFSSGPINESVRRNRPQRRSRSPPRRRY*