Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749840 | XP_003610981.1 | 97.194 | 392 | 11 | 0 | 1 | 392 | 1 | 392 | 0.0 | 795 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749840 | sp|O65781|GALE2_CYATE | 86.207 | 348 | 47 | 1 | 46 | 392 | 3 | 350 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749840 | G7K9B4 | 97.194 | 392 | 11 | 0 | 1 | 392 | 1 | 392 | 0.0 | 795 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0749840 | Msa0830180 | 0.983502 | 6.414443e-158 | -8.615850e-47 |
| Msa0749840 | Msa1013070 | 0.804219 | 2.399004e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749840 | MtrunA17_Chr5g0396581 | 97.194 | 392 | 11 | 0 | 1 | 392 | 1 | 392 | 0.0 | 795 |
| Msa0749840 | MtrunA17_Chr5g0396571 | 92.219 | 347 | 27 | 0 | 46 | 392 | 3 | 349 | 0.0 | 681 |
| Msa0749840 | MtrunA17_Chr8g0388261 | 83.140 | 344 | 58 | 0 | 46 | 389 | 3 | 346 | 0.0 | 616 |
| Msa0749840 | MtrunA17_Chr4g0076751 | 66.570 | 344 | 113 | 2 | 44 | 385 | 22 | 365 | 2.63e-174 | 490 |
| Msa0749840 | MtrunA17_Chr8g0386331 | 66.286 | 350 | 115 | 3 | 42 | 388 | 1 | 350 | 6.52e-173 | 486 |
| Msa0749840 | MtrunA17_Chr8g0380921 | 42.614 | 352 | 180 | 6 | 49 | 389 | 73 | 413 | 3.17e-85 | 265 |
| Msa0749840 | MtrunA17_Chr2g0293521 | 42.486 | 346 | 185 | 6 | 49 | 387 | 73 | 411 | 1.88e-83 | 260 |
| Msa0749840 | MtrunA17_Chr1g0147841 | 28.732 | 355 | 212 | 14 | 43 | 386 | 1 | 325 | 6.77e-23 | 100 |
| Msa0749840 | MtrunA17_Chr4g0056941 | 27.701 | 361 | 217 | 13 | 35 | 377 | 85 | 419 | 1.29e-21 | 95.9 |
| Msa0749840 | MtrunA17_Chr8g0359401 | 27.635 | 351 | 213 | 14 | 47 | 386 | 7 | 327 | 2.05e-21 | 96.3 |
| Msa0749840 | MtrunA17_Chr7g0230291 | 26.515 | 396 | 239 | 14 | 14 | 379 | 41 | 414 | 2.73e-21 | 95.1 |
| Msa0749840 | MtrunA17_Chr4g0011281 | 26.593 | 361 | 228 | 12 | 38 | 379 | 91 | 433 | 1.95e-20 | 92.4 |
| Msa0749840 | MtrunA17_Chr4g0073351 | 27.119 | 354 | 223 | 13 | 48 | 386 | 96 | 429 | 2.23e-20 | 92.4 |
| Msa0749840 | MtrunA17_Chr2g0314601 | 26.781 | 351 | 216 | 14 | 47 | 386 | 7 | 327 | 7.02e-20 | 91.7 |
| Msa0749840 | MtrunA17_Chr3g0121661 | 26.377 | 345 | 220 | 12 | 48 | 377 | 100 | 425 | 2.32e-18 | 86.7 |
| Msa0749840 | MtrunA17_Chr5g0398811 | 25.000 | 348 | 221 | 12 | 48 | 377 | 91 | 416 | 4.08e-18 | 85.5 |
| Msa0749840 | MtrunA17_Chr1g0195521 | 24.054 | 370 | 234 | 15 | 13 | 364 | 82 | 422 | 3.30e-14 | 73.9 |
| Msa0749840 | MtrunA17_Chr4g0067461 | 25.449 | 334 | 197 | 16 | 45 | 369 | 109 | 399 | 3.41e-13 | 70.5 |
| Msa0749840 | MtrunA17_Chr4g0031131 | 25.469 | 373 | 215 | 14 | 8 | 369 | 6 | 326 | 1.17e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749840 | AT4G10960.1 | 82.405 | 341 | 60 | 0 | 47 | 387 | 4 | 344 | 0.0 | 600 |
| Msa0749840 | AT1G64440.1 | 77.907 | 344 | 75 | 1 | 49 | 391 | 5 | 348 | 0.0 | 582 |
| Msa0749840 | AT4G23920.1 | 80.060 | 336 | 67 | 0 | 47 | 382 | 3 | 338 | 0.0 | 579 |
| Msa0749840 | AT1G63180.1 | 66.862 | 341 | 111 | 2 | 47 | 385 | 7 | 347 | 4.84e-173 | 487 |
| Msa0749840 | AT1G12780.1 | 65.689 | 341 | 115 | 2 | 47 | 385 | 7 | 347 | 5.14e-170 | 479 |
| Msa0749840 | AT1G63180.2 | 64.746 | 295 | 101 | 3 | 47 | 338 | 7 | 301 | 2.46e-139 | 399 |
| Msa0749840 | AT1G30620.1 | 41.979 | 374 | 199 | 7 | 29 | 391 | 49 | 415 | 5.32e-87 | 270 |
| Msa0749840 | AT1G30620.6 | 41.979 | 374 | 199 | 7 | 29 | 391 | 49 | 415 | 5.32e-87 | 270 |
| Msa0749840 | AT1G30620.4 | 41.979 | 374 | 199 | 7 | 29 | 391 | 49 | 415 | 5.32e-87 | 270 |
| Msa0749840 | AT1G30620.2 | 41.979 | 374 | 199 | 7 | 29 | 391 | 49 | 415 | 5.32e-87 | 270 |
| Msa0749840 | AT1G30620.3 | 43.714 | 350 | 183 | 6 | 49 | 391 | 72 | 414 | 3.76e-86 | 268 |
| Msa0749840 | AT5G44480.3 | 41.429 | 350 | 183 | 6 | 49 | 387 | 73 | 411 | 3.21e-83 | 260 |
| Msa0749840 | AT5G44480.4 | 41.429 | 350 | 183 | 6 | 49 | 387 | 73 | 411 | 3.21e-83 | 260 |
| Msa0749840 | AT5G44480.2 | 41.429 | 350 | 183 | 6 | 49 | 387 | 73 | 411 | 3.21e-83 | 260 |
| Msa0749840 | AT5G44480.1 | 41.429 | 350 | 183 | 6 | 49 | 387 | 97 | 435 | 7.88e-83 | 260 |
| Msa0749840 | AT4G20460.1 | 42.775 | 346 | 184 | 6 | 49 | 387 | 72 | 410 | 1.95e-82 | 258 |
| Msa0749840 | AT1G30620.5 | 44.240 | 217 | 115 | 3 | 29 | 241 | 49 | 263 | 1.14e-52 | 177 |
| Msa0749840 | AT2G34850.3 | 41.702 | 235 | 124 | 5 | 160 | 387 | 1 | 229 | 2.36e-51 | 172 |
| Msa0749840 | AT2G34850.1 | 41.702 | 235 | 124 | 5 | 160 | 387 | 1 | 229 | 2.36e-51 | 172 |
| Msa0749840 | AT2G34850.4 | 41.702 | 235 | 124 | 5 | 160 | 387 | 1 | 229 | 2.36e-51 | 172 |
| Msa0749840 | AT2G34850.2 | 41.702 | 235 | 124 | 5 | 160 | 387 | 1 | 229 | 2.36e-51 | 172 |
| Msa0749840 | AT1G53500.1 | 27.066 | 351 | 215 | 14 | 47 | 386 | 9 | 329 | 4.33e-23 | 101 |
| Msa0749840 | AT1G02000.1 | 27.826 | 345 | 206 | 13 | 38 | 362 | 82 | 403 | 5.57e-22 | 97.4 |
| Msa0749840 | AT4G00110.1 | 27.844 | 334 | 199 | 12 | 48 | 362 | 92 | 402 | 5.94e-22 | 97.4 |
| Msa0749840 | AT2G45310.1 | 26.648 | 349 | 214 | 12 | 48 | 377 | 98 | 423 | 2.08e-21 | 95.9 |
| Msa0749840 | AT3G14790.2 | 26.781 | 351 | 216 | 13 | 47 | 386 | 10 | 330 | 2.14e-20 | 93.6 |
| Msa0749840 | AT3G14790.1 | 26.781 | 351 | 216 | 13 | 47 | 386 | 7 | 327 | 2.21e-20 | 93.6 |
| Msa0749840 | AT1G78570.1 | 26.781 | 351 | 216 | 14 | 47 | 386 | 7 | 327 | 2.67e-20 | 93.6 |
| Msa0749840 | AT3G23820.1 | 26.957 | 345 | 218 | 11 | 48 | 377 | 113 | 438 | 7.31e-19 | 88.6 |
| Msa0749840 | AT4G12250.1 | 26.513 | 347 | 217 | 11 | 48 | 377 | 97 | 422 | 6.92e-18 | 85.5 |
| Msa0749840 | AT4G30440.1 | 26.184 | 359 | 222 | 14 | 48 | 387 | 89 | 423 | 7.31e-16 | 79.3 |
| Msa0749840 | AT2G47650.1 | 26.455 | 378 | 221 | 18 | 12 | 373 | 86 | 422 | 1.38e-15 | 78.6 |
| Msa0749840 | AT2G47650.2 | 27.034 | 381 | 221 | 19 | 12 | 373 | 86 | 428 | 1.62e-15 | 78.2 |
| Msa0749840 | AT3G53520.1 | 23.747 | 379 | 242 | 14 | 3 | 369 | 70 | 413 | 1.45e-14 | 75.5 |
| Msa0749840 | AT3G53520.4 | 25.378 | 331 | 198 | 15 | 3 | 321 | 70 | 363 | 2.98e-13 | 71.2 |
| Msa0749840 | AT3G53520.2 | 23.747 | 379 | 240 | 15 | 3 | 369 | 70 | 411 | 7.71e-13 | 70.1 |
| Msa0749840 | AT2G28760.1 | 25.893 | 336 | 211 | 13 | 39 | 369 | 23 | 325 | 2.73e-11 | 64.7 |
| Msa0749840 | AT2G28760.2 | 25.893 | 336 | 211 | 13 | 39 | 369 | 23 | 325 | 2.73e-11 | 64.7 |
| Msa0749840 | AT2G28760.3 | 25.893 | 336 | 211 | 13 | 39 | 369 | 23 | 325 | 2.73e-11 | 64.7 |
| Msa0749840 | AT2G28760.4 | 25.824 | 364 | 229 | 14 | 14 | 369 | 26 | 356 | 3.66e-11 | 64.7 |
Find 127 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAACTCGCTGCTGAATT+TGG | 0.168833 | 5_2:+3341423 | Msa0749840:CDS |
| ATAAATGGCATAAGATTATT+TGG | 0.181549 | 5_2:-3343230 | None:intergenic |
| TGAAGAAAGAAGAATATTTA+TGG | 0.231607 | 5_2:-3341005 | None:intergenic |
| ATATCTAGGTTCCACCTTAC+AGG | 0.242626 | 5_2:+3344912 | Msa0749840:three_prime_UTR |
| ATAGGTTATTATTATATATA+AGG | 0.248011 | 5_2:+3344937 | Msa0749840:three_prime_UTR |
| ACCGCTACTTGCTGAATAAA+TGG | 0.272562 | 5_2:-3343245 | None:intergenic |
| AATTAGAATTACTACCGTTT+TGG | 0.279718 | 5_2:-3341245 | None:intergenic |
| GGTTCCACCTTACAGGTTAT+AGG | 0.285218 | 5_2:+3344919 | Msa0749840:three_prime_UTR |
| AGAAGAATATTTATGGTGAT+TGG | 0.292729 | 5_2:-3340998 | None:intergenic |
| CATACCTTGGTTCGTCCATA+TGG | 0.299595 | 5_2:-3342818 | None:intergenic |
| TGCCATAGATGTTATGATCT+TGG | 0.302207 | 5_2:+3344718 | Msa0749840:three_prime_UTR |
| GATTGGGACAATCACTCTTT+TGG | 0.302714 | 5_2:+3342584 | Msa0749840:CDS |
| ATGGGATTTGAGTTTAGTTT+AGG | 0.303793 | 5_2:-3341040 | None:intergenic |
| CACACCCTAGTGGTTATATT+GGG | 0.312315 | 5_2:+3343189 | Msa0749840:CDS |
| TTTACCATACTATAGTTTAC+AGG | 0.314846 | 5_2:+3344887 | Msa0749840:three_prime_UTR |
| TGGGAATATACTATGCTCTA+TGG | 0.320274 | 5_2:-3341059 | None:intergenic |
| GCACACCCTAGTGGTTATAT+TGG | 0.324849 | 5_2:+3343188 | Msa0749840:CDS |
| TCATCTTCAGCCACTGTATA+TGG | 0.330380 | 5_2:+3342743 | Msa0749840:CDS |
| CCACTTTAATCTGTGGAATC+AGG | 0.342821 | 5_2:-3344681 | None:intergenic |
| CAATTCTCGCTTCGCTTCAA+TGG | 0.344508 | 5_2:+3341134 | Msa0749840:exon |
| ACCCAAGATCATAACATCTA+TGG | 0.351243 | 5_2:-3344720 | None:intergenic |
| GAAGAATATTTATGGTGATT+GGG | 0.352498 | 5_2:-3340997 | None:intergenic |
| TACTACAACAACAACTTGAT+TGG | 0.354486 | 5_2:+3342567 | Msa0749840:CDS |
| TGATGTGGCAGGGCAAAATA+TGG | 0.355594 | 5_2:+3344594 | Msa0749840:intron |
| TGGAATGAAGAATTCTTAGA+AGG | 0.355786 | 5_2:-3341219 | None:intergenic |
| AGGAAAGGGAACATCAGTTT+TGG | 0.357526 | 5_2:+3343794 | Msa0749840:CDS |
| GCCATAGATGTTATGATCTT+GGG | 0.357704 | 5_2:+3344719 | Msa0749840:three_prime_UTR |
| AAATCAAATCACATAACTTT+CGG | 0.358397 | 5_2:+3341100 | Msa0749840:five_prime_UTR |
| AGGAACTCGCTGCTGAATTT+GGG | 0.373544 | 5_2:+3341424 | Msa0749840:CDS |
| CATGTTCTACATGAACTTGA+TGG | 0.404661 | 5_2:+3344967 | Msa0749840:three_prime_UTR |
| GTTTATGCAATGCAGCAATA+TGG | 0.405003 | 5_2:-3343578 | None:intergenic |
| ATAACCTGTAAACTATAGTA+TGG | 0.405799 | 5_2:-3344891 | None:intergenic |
| AACAAAACCGTTCTAGTTAC+CGG | 0.411332 | 5_2:+3341288 | Msa0749840:CDS |
| ATAGTTTACAGGTTATATCT+AGG | 0.411778 | 5_2:+3344898 | Msa0749840:three_prime_UTR |
| AATGATTATAATACAGTTGA+TGG | 0.415727 | 5_2:+3343299 | Msa0749840:CDS |
| TGTGCCGTGATCAATGGAAT+TGG | 0.420702 | 5_2:+3344628 | Msa0749840:CDS |
| TCTCGCGTCGGCATCACTAA+TGG | 0.429875 | 5_2:+3341159 | Msa0749840:CDS |
| TCAGTACATGGAACCTCCTT+CGG | 0.438588 | 5_2:-3342770 | None:intergenic |
| GGCTGTGACGTTTATAACTT+AGG | 0.439614 | 5_2:+3343768 | Msa0749840:intron |
| AAGAATATTTATGGTGATTG+GGG | 0.443295 | 5_2:-3340996 | None:intergenic |
| AGTTGCTGTTCATAGAGTTA+AGG | 0.447776 | 5_2:+3341404 | Msa0749840:CDS |
| TTGGAAGTCATGGCTGCTCA+TGG | 0.451385 | 5_2:+3342603 | Msa0749840:CDS |
| GGCCACTGCAGGTAGACATC+CGG | 0.451531 | 5_2:+3342130 | Msa0749840:intron |
| ATAGTTTAGATTTACAAAAC+AGG | 0.451911 | 5_2:-3344993 | None:intergenic |
| GTGAAGGCTGGCCGTAGGCC+TGG | 0.454952 | 5_2:+3344327 | Msa0749840:CDS |
| CTTTCAGCAGCAAACCCATA+TGG | 0.460790 | 5_2:+3342803 | Msa0749840:CDS |
| ACTACAACAACAACTTGATT+GGG | 0.462398 | 5_2:+3342568 | Msa0749840:CDS |
| TAATATGAATATGAATGAAT+GGG | 0.464371 | 5_2:-3341078 | None:intergenic |
| CCACTAGGGTGTGCACCCAC+TGG | 0.468983 | 5_2:-3343179 | None:intergenic |
| TGCAGGTAGACATCCGGGAC+AGG | 0.471148 | 5_2:+3342136 | Msa0749840:intron |
| CACTAGGGTGTGCACCCACT+GGG | 0.471612 | 5_2:-3343178 | None:intergenic |
| TATAATACAGTTGATGGCAC+TGG | 0.475559 | 5_2:+3343305 | Msa0749840:CDS |
| TTAATATGAATATGAATGAA+TGG | 0.477568 | 5_2:-3341079 | None:intergenic |
| ATGAAATGTGCCGTGATCAA+TGG | 0.481865 | 5_2:+3344622 | Msa0749840:CDS |
| AACTAAATTCACAGAACCTA+TGG | 0.482890 | 5_2:-3344779 | None:intergenic |
| ATAATAACCTATAACCTGTA+AGG | 0.486058 | 5_2:-3344926 | None:intergenic |
| GCTCAAGTGCAGCCCTGTCC+CGG | 0.493218 | 5_2:-3342149 | None:intergenic |
| TCAATCGTGCTGATCCAGAT+TGG | 0.502291 | 5_2:+3343129 | Msa0749840:CDS |
| AAGCTGAAAGAGAACTTAAG+TGG | 0.503547 | 5_2:+3344382 | Msa0749840:CDS |
| TTTACTCGGCGGTTTCAAAA+CGG | 0.504395 | 5_2:+3341350 | Msa0749840:CDS |
| GACGTTTATAACTTAGGGAC+AGG | 0.505250 | 5_2:+3343774 | Msa0749840:CDS |
| TCAGAAAATTCCACTTGTGA+AGG | 0.507254 | 5_2:+3344311 | Msa0749840:intron |
| ATACCTTGGTTCGTCCATAT+GGG | 0.507726 | 5_2:-3342817 | None:intergenic |
| TATAACTTAGGGACAGGAAA+GGG | 0.507998 | 5_2:+3343780 | Msa0749840:CDS |
| TCTTCATTCCAAACCCAAAA+CGG | 0.510188 | 5_2:+3341231 | Msa0749840:CDS |
| GGGAATATACTATGCTCTAT+GGG | 0.514215 | 5_2:-3341058 | None:intergenic |
| ATAATACAGTTGATGGCACT+GGG | 0.520770 | 5_2:+3343306 | Msa0749840:CDS |
| CATGTTGTTGATTTAGCTGA+TGG | 0.521889 | 5_2:+3343555 | Msa0749840:CDS |
| GCTTCAATGGCTTCTCGCGT+CGG | 0.522264 | 5_2:+3341147 | Msa0749840:exon |
| TATGGGTTTGCTGCTGAAAG+AGG | 0.522622 | 5_2:-3342800 | None:intergenic |
| AAAATTCCACTTGTGAAGGC+TGG | 0.523612 | 5_2:+3344315 | Msa0749840:CDS |
| AGAGCACCTTGTGAAAATTG+AGG | 0.524145 | 5_2:-3341452 | None:intergenic |
| GGTGTGGCTACCGATGTAAC+CGG | 0.525888 | 5_2:-3341316 | None:intergenic |
| AACACGGTAAGAGTATTTGT+TGG | 0.526363 | 5_2:-3345043 | None:intergenic |
| AACTCTATGAACAGCAACTT+CGG | 0.528814 | 5_2:-3341400 | None:intergenic |
| GCTGTGACGTTTATAACTTA+GGG | 0.529207 | 5_2:+3343769 | Msa0749840:CDS |
| CCTGATTCCACAGATTAAAG+TGG | 0.531279 | 5_2:+3344681 | Msa0749840:exon |
| TCATTGTCCACTTTAATCTG+TGG | 0.538500 | 5_2:-3344688 | None:intergenic |
| ACCGATGTAACCGGCACCGC+CGG | 0.541899 | 5_2:-3341307 | None:intergenic |
| GTGCCGTGATCAATGGAATT+GGG | 0.542969 | 5_2:+3344629 | Msa0749840:CDS |
| CAGGAGATCCATAGCCGTAA+GGG | 0.545140 | 5_2:-3344662 | None:intergenic |
| AGAGGAAACTCTTCAGTACA+TGG | 0.546798 | 5_2:-3342782 | None:intergenic |
| GTTCTAGTTACCGGCGGTGC+CGG | 0.549409 | 5_2:+3341297 | Msa0749840:CDS |
| GCCACTGCAGGTAGACATCC+GGG | 0.559878 | 5_2:+3342131 | Msa0749840:intron |
| TTGTTGTTGTAGTAGAGTAA+CGG | 0.566441 | 5_2:-3342558 | None:intergenic |
| TCAGGAGATCCATAGCCGTA+AGG | 0.570852 | 5_2:-3344663 | None:intergenic |
| TTTATTCAGCAAGTAGCGGT+TGG | 0.573220 | 5_2:+3343248 | Msa0749840:CDS |
| TGAAGAGTTTAAATAAGAAG+AGG | 0.577484 | 5_2:-3341184 | None:intergenic |
| CTTCAGCCACTGTATATGGT+TGG | 0.578060 | 5_2:+3342747 | Msa0749840:CDS |
| TATATTGGGGAGGATCCTCA+CGG | 0.584038 | 5_2:+3343203 | Msa0749840:CDS |
| GCCATTTATTCAGCAAGTAG+CGG | 0.584484 | 5_2:+3343244 | Msa0749840:CDS |
| GGCTGCTCATGGATGCAAGA+AGG | 0.588720 | 5_2:+3342614 | Msa0749840:CDS |
| AAACTAGAAGAAGCTGACAT+AGG | 0.589751 | 5_2:+3343597 | Msa0749840:CDS |
| TGTATATGGTTGGCCGAAGG+AGG | 0.591711 | 5_2:+3342757 | Msa0749840:CDS |
| CACTGTATATGGTTGGCCGA+AGG | 0.593964 | 5_2:+3342754 | Msa0749840:CDS |
| CACTTGTGAAGGCTGGCCGT+AGG | 0.596509 | 5_2:+3344322 | Msa0749840:CDS |
| ATATTGGGGAGGATCCTCAC+GGG | 0.599402 | 5_2:+3343204 | Msa0749840:CDS |
| TTATAACTTAGGGACAGGAA+AGG | 0.600592 | 5_2:+3343779 | Msa0749840:CDS |
| TTTCAGCATCACCAGGCCTA+CGG | 0.603678 | 5_2:-3344338 | None:intergenic |
| TCCTCCCCAATATAACCACT+AGG | 0.607338 | 5_2:-3343194 | None:intergenic |
| TAAACAATTTCAGCATCACC+AGG | 0.611844 | 5_2:-3344345 | None:intergenic |
| TTGAGATACTTCAACCCAGT+GGG | 0.612544 | 5_2:+3343164 | Msa0749840:CDS |
| TAGCCCAATTCCATTGATCA+CGG | 0.615843 | 5_2:-3344632 | None:intergenic |
| CCCTAGTGGTTATATTGGGG+AGG | 0.615928 | 5_2:+3343193 | Msa0749840:CDS |
| ATAACCTATAACCTGTAAGG+TGG | 0.618440 | 5_2:-3344923 | None:intergenic |
| ACCGGCGGTGCCGGTTACAT+CGG | 0.627367 | 5_2:+3341306 | Msa0749840:CDS |
| CTACGGCCAGCCTTCACAAG+TGG | 0.628252 | 5_2:-3344321 | None:intergenic |
| GCAGGTAGACATCCGGGACA+GGG | 0.638284 | 5_2:+3342137 | Msa0749840:intron |
| TCTGCCACATCAATCACCAT+AGG | 0.643581 | 5_2:+3344763 | Msa0749840:three_prime_UTR |
| CCTCCCCAATATAACCACTA+GGG | 0.650185 | 5_2:-3343193 | None:intergenic |
| GCCGAGTAAAAGCTGAAGAA+CGG | 0.652299 | 5_2:-3341337 | None:intergenic |
| AGAATATTTATGGTGATTGG+GGG | 0.653476 | 5_2:-3340995 | None:intergenic |
| GGCACCGCCGGTAACTAGAA+CGG | 0.658798 | 5_2:-3341295 | None:intergenic |
| ACACCCTAGTGGTTATATTG+GGG | 0.659441 | 5_2:+3343190 | Msa0749840:CDS |
| TTTGCTGGAATGAAAGCAGT+GGG | 0.661073 | 5_2:+3342519 | Msa0749840:CDS |
| CCAGTGGGTGCACACCCTAG+TGG | 0.666271 | 5_2:+3343179 | Msa0749840:CDS |
| AAACCCATATGGACGAACCA+AGG | 0.674131 | 5_2:+3342814 | Msa0749840:CDS |
| AGATTATTTGGAATCCCGTG+AGG | 0.688575 | 5_2:-3343218 | None:intergenic |
| AAGCTTAATCTAACATAACA+CGG | 0.695359 | 5_2:-3345059 | None:intergenic |
| AGAACCTATGGTGATTGATG+TGG | 0.696407 | 5_2:-3344767 | None:intergenic |
| CTTCGGCCAACCATATACAG+TGG | 0.701226 | 5_2:-3342753 | None:intergenic |
| ATTGAGATACTTCAACCCAG+TGG | 0.701880 | 5_2:+3343163 | Msa0749840:CDS |
| AGAGTAACAGATCAGCCACG+TGG | 0.727214 | 5_2:-3340970 | None:intergenic |
| GTAAAAGCTGAAGAACGGTG+TGG | 0.738273 | 5_2:-3341332 | None:intergenic |
| TAATACAGTTGATGGCACTG+GGG | 0.771630 | 5_2:+3343307 | Msa0749840:CDS |
| AAAACCGTTCTAGTTACCGG+CGG | 0.775437 | 5_2:+3341291 | Msa0749840:CDS |
| GAACACACTGGAAATCCACG+TGG | 0.813066 | 5_2:+3340955 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTTAATAATAATGAAAAAT+CGG | + | chr5_2:3342391-3342410 | Msa0749840:intron | 10.0% |
| !! | AGAGAATAATAAAATATAAA+GGG | - | chr5_2:3344561-3344580 | None:intergenic | 10.0% |
| !! | TAGAGAATAATAAAATATAA+AGG | - | chr5_2:3344562-3344581 | None:intergenic | 10.0% |
| !! | ATAGGTTATTATTATATATA+AGG | + | chr5_2:3344937-3344956 | Msa0749840:three_prime_UTR | 10.0% |
| !! | TAATATGAATATGAATGAAT+GGG | - | chr5_2:3341081-3341100 | None:intergenic | 15.0% |
| !! | TTAATATGAATATGAATGAA+TGG | - | chr5_2:3341082-3341101 | None:intergenic | 15.0% |
| !!! | ATTGATAATTTTCTGAATTT+AGG | + | chr5_2:3341526-3341545 | Msa0749840:intron | 15.0% |
| !! | CTACAATAAAAGAATAAAAA+AGG | - | chr5_2:3342480-3342499 | None:intergenic | 15.0% |
| !!! | CTTTTTTATTCTTTTATTGT+AGG | + | chr5_2:3342478-3342497 | Msa0749840:intron | 15.0% |
| !! | GAGAATAATAAAATATAAAG+GGG | - | chr5_2:3344560-3344579 | None:intergenic | 15.0% |
| !! | CTAAAAAAAATTATTTGATG+TGG | + | chr5_2:3344579-3344598 | Msa0749840:intron | 15.0% |
| !! | TGAAGAAAGAAGAATATTTA+TGG | - | chr5_2:3341008-3341027 | None:intergenic | 20.0% |
| !! | AAATCAAATCACATAACTTT+CGG | + | chr5_2:3341100-3341119 | Msa0749840:five_prime_UTR | 20.0% |
| !! | AATTGCAAAAATTCTTATCA+AGG | - | chr5_2:3341656-3341675 | None:intergenic | 20.0% |
| !!! | TTGCAATTTGATGTAATTTT+TGG | + | chr5_2:3341668-3341687 | Msa0749840:intron | 20.0% |
| !!! | TGCAATTTGATGTAATTTTT+GGG | + | chr5_2:3341669-3341688 | Msa0749840:intron | 20.0% |
| !!! | TTTGACTTTTCATGATAATT+CGG | + | chr5_2:3341770-3341789 | Msa0749840:intron | 20.0% |
| !!! | AATAATTTACTCTTGTTTAG+AGG | + | chr5_2:3341832-3341851 | Msa0749840:intron | 20.0% |
| !!! | ATAATTTACTCTTGTTTAGA+GGG | + | chr5_2:3341833-3341852 | Msa0749840:intron | 20.0% |
| !! | TACTGAGAATCAAAATAAAA+AGG | - | chr5_2:3342228-3342247 | None:intergenic | 20.0% |
| !! | TATGATAAGGAAATTGTTTA+GGG | + | chr5_2:3342837-3342856 | Msa0749840:intron | 20.0% |
| !! | TGAAGTAGATGAATAATTTA+AGG | + | chr5_2:3342926-3342945 | Msa0749840:intron | 20.0% |
| !! | GATAATTAGAAAGAATTTGA+AGG | - | chr5_2:3342958-3342977 | None:intergenic | 20.0% |
| !!! | AATAACATTATTTTCCAATC+TGG | - | chr5_2:3343146-3343165 | None:intergenic | 20.0% |
| !! | ATAAATGGCATAAGATTATT+TGG | - | chr5_2:3343233-3343252 | None:intergenic | 20.0% |
| !! | AATGATTATAATACAGTTGA+TGG | + | chr5_2:3343299-3343318 | Msa0749840:CDS | 20.0% |
| !!! | TTCAAGCAAAAATTTTAACA+GGG | - | chr5_2:3343408-3343427 | None:intergenic | 20.0% |
| !!! | ATTCAAGCAAAAATTTTAAC+AGG | - | chr5_2:3343409-3343428 | None:intergenic | 20.0% |
| !! | AGGTAAGATAATGATATATT+TGG | - | chr5_2:3343630-3343649 | None:intergenic | 20.0% |
| !!! | ATTGGAAAAAGAAAATTTTG+AGG | + | chr5_2:3343698-3343717 | Msa0749840:intron | 20.0% |
| !!! | AGTATTTTTGTTTTGAAAAG+TGG | - | chr5_2:3343913-3343932 | None:intergenic | 20.0% |
| !! | TATTTGATTCCTATAACATT+TGG | - | chr5_2:3344133-3344152 | None:intergenic | 20.0% |
| !! | TTCATCTTTATGATATATTC+TGG | + | chr5_2:3344503-3344522 | Msa0749840:intron | 20.0% |
| !! | TCATCTTTATGATATATTCT+GGG | + | chr5_2:3344504-3344523 | Msa0749840:intron | 20.0% |
| !! | ATAATAAAATATAAAGGGGT+AGG | - | chr5_2:3344556-3344575 | None:intergenic | 20.0% |
| !!! | TTTCTCTTATAGCATTTTAA+AGG | + | chr5_2:3344817-3344836 | Msa0749840:three_prime_UTR | 20.0% |
| !! | ATAGTTTAGATTTACAAAAC+AGG | - | chr5_2:3344996-3345015 | None:intergenic | 20.0% |
| !!! | TCAAATTTTCATAAAATGCT+TGG | - | chr5_2:3345100-3345119 | None:intergenic | 20.0% |
| ! | AAGAATATTTATGGTGATTG+GGG | - | chr5_2:3340999-3341018 | None:intergenic | 25.0% |
| ! | GAAGAATATTTATGGTGATT+GGG | - | chr5_2:3341000-3341019 | None:intergenic | 25.0% |
| ! | AGAAGAATATTTATGGTGAT+TGG | - | chr5_2:3341001-3341020 | None:intergenic | 25.0% |
| ! | TGAAGAGTTTAAATAAGAAG+AGG | - | chr5_2:3341187-3341206 | None:intergenic | 25.0% |
| !! | ATTAGAATTACTACCGTTTT+GGG | - | chr5_2:3341247-3341266 | None:intergenic | 25.0% |
| !! | AATTAGAATTACTACCGTTT+TGG | - | chr5_2:3341248-3341267 | None:intergenic | 25.0% |
| ! | ATATACATATATAACGCTGA+AGG | - | chr5_2:3341496-3341515 | None:intergenic | 25.0% |
| !! | GATTTGTGTAATTTTTGTGA+TGG | + | chr5_2:3341584-3341603 | Msa0749840:intron | 25.0% |
| !! | GCAATTTGATGTAATTTTTG+GGG | + | chr5_2:3341670-3341689 | Msa0749840:intron | 25.0% |
| !! | TAATTTACTCTTGTTTAGAG+GGG | + | chr5_2:3341834-3341853 | Msa0749840:intron | 25.0% |
| !!! | TTTTTTCATAGGATTTTGGA+GGG | - | chr5_2:3342003-3342022 | None:intergenic | 25.0% |
| !!! | TTTTTTTCATAGGATTTTGG+AGG | - | chr5_2:3342004-3342023 | None:intergenic | 25.0% |
| !!! | TGGTTTTTTTCATAGGATTT+TGG | - | chr5_2:3342007-3342026 | None:intergenic | 25.0% |
| ! | AAAGCCAGAAGTAAAATTAA+GGG | - | chr5_2:3342043-3342062 | None:intergenic | 25.0% |
| !!! | AGACAGTTCTGATTATATTT+TGG | + | chr5_2:3342109-3342128 | Msa0749840:intron | 25.0% |
| ! | TTGATATAATCCTTACTTTG+TGG | - | chr5_2:3342187-3342206 | None:intergenic | 25.0% |
| ! | CAAAGACATTAGATAAGTTT+GGG | + | chr5_2:3342300-3342319 | Msa0749840:intron | 25.0% |
| ! | GTATGATAAGGAAATTGTTT+AGG | + | chr5_2:3342836-3342855 | Msa0749840:intron | 25.0% |
| ! | TTCAAAACCCCAAAAATATA+TGG | - | chr5_2:3342893-3342912 | None:intergenic | 25.0% |
| ! | AGTAGATGAATAATTTAAGG+AGG | + | chr5_2:3342929-3342948 | Msa0749840:intron | 25.0% |
| ! | TACACGTGAAATAATCAAAA+CGG | - | chr5_2:3343360-3343379 | None:intergenic | 25.0% |
| !!! | AATTTTAACAGGGTACAAAT+GGG | - | chr5_2:3343398-3343417 | None:intergenic | 25.0% |
| !!! | AAATTTTAACAGGGTACAAA+TGG | - | chr5_2:3343399-3343418 | None:intergenic | 25.0% |
| ! | GCATGAATATTAAATACGTA+AGG | - | chr5_2:3343732-3343751 | None:intergenic | 25.0% |
| ! | GGAAAGGTAATAACTTTATT+TGG | + | chr5_2:3343846-3343865 | Msa0749840:intron | 25.0% |
| ! | TATTCGAACACAAAATATCT+TGG | - | chr5_2:3343988-3344007 | None:intergenic | 25.0% |
| !! | GAATCAAATAATTTTCCTCT+AGG | + | chr5_2:3344143-3344162 | Msa0749840:intron | 25.0% |
| !! | TGTCGATTAAAGATTAAGTT+TGG | - | chr5_2:3344180-3344199 | None:intergenic | 25.0% |
| ! | TAATCTTTAATCGACAATCA+CGG | + | chr5_2:3344184-3344203 | Msa0749840:intron | 25.0% |
| ! | TTCCTTTCTAATATCATGTA+AGG | + | chr5_2:3344437-3344456 | Msa0749840:intron | 25.0% |
| ! | AAAAAATTATTTGATGTGGC+AGG | + | chr5_2:3344583-3344602 | Msa0749840:intron | 25.0% |
| ! | AAAAATTATTTGATGTGGCA+GGG | + | chr5_2:3344584-3344603 | Msa0749840:intron | 25.0% |
| ! | TTTACCATACTATAGTTTAC+AGG | + | chr5_2:3344887-3344906 | Msa0749840:three_prime_UTR | 25.0% |
| ! | ATAACCTGTAAACTATAGTA+TGG | - | chr5_2:3344894-3344913 | None:intergenic | 25.0% |
| ! | ATAGTTTACAGGTTATATCT+AGG | + | chr5_2:3344898-3344917 | Msa0749840:three_prime_UTR | 25.0% |
| ! | ATAATAACCTATAACCTGTA+AGG | - | chr5_2:3344929-3344948 | None:intergenic | 25.0% |
| ! | AAGCTTAATCTAACATAACA+CGG | - | chr5_2:3345062-3345081 | None:intergenic | 25.0% |
| AGAATATTTATGGTGATTGG+GGG | - | chr5_2:3340998-3341017 | None:intergenic | 30.0% | |
| ! | ATGGGATTTGAGTTTAGTTT+AGG | - | chr5_2:3341043-3341062 | None:intergenic | 30.0% |
| TGGAATGAAGAATTCTTAGA+AGG | - | chr5_2:3341222-3341241 | None:intergenic | 30.0% | |
| ! | GAATAACCTCAATTTTCACA+AGG | + | chr5_2:3341446-3341465 | Msa0749840:CDS | 30.0% |
| ! | TTGTGTAATTTTTGTGATGG+CGG | + | chr5_2:3341587-3341606 | Msa0749840:intron | 30.0% |
| GAAAGCTCAAAAGCAATATT+TGG | - | chr5_2:3341724-3341743 | None:intergenic | 30.0% | |
| GAAAGCCAGAAGTAAAATTA+AGG | - | chr5_2:3342044-3342063 | None:intergenic | 30.0% | |
| ! | ATTTTTGCTTCCACAAAGTA+AGG | + | chr5_2:3342174-3342193 | Msa0749840:intron | 30.0% |
| AACTTATCTAATGTCTTTGC+AGG | - | chr5_2:3342299-3342318 | None:intergenic | 30.0% | |
| GCAAAGACATTAGATAAGTT+TGG | + | chr5_2:3342299-3342318 | Msa0749840:intron | 30.0% | |
| AGAATCTCACACATTAAATG+TGG | - | chr5_2:3342355-3342374 | None:intergenic | 30.0% | |
| ! | TTGTTGTTGTAGTAGAGTAA+CGG | - | chr5_2:3342561-3342580 | None:intergenic | 30.0% |
| TACTACAACAACAACTTGAT+TGG | + | chr5_2:3342567-3342586 | Msa0749840:CDS | 30.0% | |
| ACTACAACAACAACTTGATT+GGG | + | chr5_2:3342568-3342587 | Msa0749840:CDS | 30.0% | |
| ACAATTTCCTTATCATACCT+TGG | - | chr5_2:3342834-3342853 | None:intergenic | 30.0% | |
| ! | TGTCTCTGCCATATATTTTT+GGG | + | chr5_2:3342882-3342901 | Msa0749840:intron | 30.0% |
| ! | TACCTTTGATTTCTTCACTA+TGG | + | chr5_2:3343485-3343504 | Msa0749840:intron | 30.0% |
| !!! | CGAGTAAGTGTTTTTTTGAA+AGG | - | chr5_2:3343671-3343690 | None:intergenic | 30.0% |
| !! | ACACTTACTCGTTTTGTTAT+TGG | + | chr5_2:3343680-3343699 | Msa0749840:intron | 30.0% |
| !!! | AAAAGAAAATTTTGAGGCAG+TGG | + | chr5_2:3343704-3343723 | Msa0749840:intron | 30.0% |
| !! | CACATGCTTTTATTTCTTTG+CGG | + | chr5_2:3343939-3343958 | Msa0749840:intron | 30.0% |
| ATAGCACTCCATAAAGAAAA+GGG | - | chr5_2:3344086-3344105 | None:intergenic | 30.0% | |
| TATAGCACTCCATAAAGAAA+AGG | - | chr5_2:3344087-3344106 | None:intergenic | 30.0% | |
| GCTCAATGTTATACATGATT+TGG | - | chr5_2:3344249-3344268 | None:intergenic | 30.0% | |
| !!! | TTCTCTTTCAGCTTTTTTTG+TGG | - | chr5_2:3344376-3344395 | None:intergenic | 30.0% |
| TATTCCTTATCTAACTGATC+AGG | + | chr5_2:3344412-3344431 | Msa0749840:intron | 30.0% | |
| GTCCTTACATGATATTAGAA+AGG | - | chr5_2:3344442-3344461 | None:intergenic | 30.0% | |
| TTCTAATATCATGTAAGGAC+TGG | + | chr5_2:3344442-3344461 | Msa0749840:intron | 30.0% | |
| TCTAATATCATGTAAGGACT+GGG | + | chr5_2:3344443-3344462 | Msa0749840:intron | 30.0% | |
| TTTATGATATATTCTGGGTG+TGG | + | chr5_2:3344509-3344528 | Msa0749840:intron | 30.0% | |
| AACTAAATTCACAGAACCTA+TGG | - | chr5_2:3344782-3344801 | None:intergenic | 30.0% | |
| CTATAAGAGAAAAAGAGCTT+CGG | - | chr5_2:3344809-3344828 | None:intergenic | 30.0% | |
| GGGAATATACTATGCTCTAT+GGG | - | chr5_2:3341061-3341080 | None:intergenic | 35.0% | |
| TGGGAATATACTATGCTCTA+TGG | - | chr5_2:3341062-3341081 | None:intergenic | 35.0% | |
| TCTTCATTCCAAACCCAAAA+CGG | + | chr5_2:3341231-3341250 | Msa0749840:CDS | 35.0% | |
| !!! | AATTACTACCGTTTTGGGTT+TGG | - | chr5_2:3341242-3341261 | None:intergenic | 35.0% |
| ! | AACAAAACCGTTCTAGTTAC+CGG | + | chr5_2:3341288-3341307 | Msa0749840:CDS | 35.0% |
| AACTCTATGAACAGCAACTT+CGG | - | chr5_2:3341403-3341422 | None:intergenic | 35.0% | |
| ! | AGTTGCTGTTCATAGAGTTA+AGG | + | chr5_2:3341404-3341423 | Msa0749840:CDS | 35.0% |
| CTGAAGGTAAAAAATCGCAA+CGG | - | chr5_2:3341480-3341499 | None:intergenic | 35.0% | |
| TTAGAGGGGAACAATTTAGA+TGG | + | chr5_2:3341848-3341867 | Msa0749840:intron | 35.0% | |
| !!! | TGCGAGTTGGTTTTTTTCAT+AGG | - | chr5_2:3342014-3342033 | None:intergenic | 35.0% |
| ! | CACACCCTTAATTTTACTTC+TGG | + | chr5_2:3342036-3342055 | Msa0749840:intron | 35.0% |
| ! | TGTTTGCAGTTTGTTCAGTA+TGG | + | chr5_2:3342079-3342098 | Msa0749840:intron | 35.0% |
| ACATTAAATGTGGAGAAGTG+TGG | - | chr5_2:3342345-3342364 | None:intergenic | 35.0% | |
| ! | AGATAACATGAAGCACCAAA+TGG | - | chr5_2:3342423-3342442 | None:intergenic | 35.0% |
| ! | GATGCAGTTATACATTTTGC+TGG | + | chr5_2:3342504-3342523 | Msa0749840:CDS | 35.0% |
| !! | AATCACTCTTTTGGAAGTCA+TGG | + | chr5_2:3342593-3342612 | Msa0749840:CDS | 35.0% |
| !!! | GAAGGTAAGTTCCTTGTTTT+TGG | + | chr5_2:3342632-3342651 | Msa0749840:intron | 35.0% |
| ! | CTGTCTCTGCCATATATTTT+TGG | + | chr5_2:3342881-3342900 | Msa0749840:intron | 35.0% |
| !! | GTCTCTGCCATATATTTTTG+GGG | + | chr5_2:3342883-3342902 | Msa0749840:intron | 35.0% |
| !! | TATAATACAGTTGATGGCAC+TGG | + | chr5_2:3343305-3343324 | Msa0749840:CDS | 35.0% |
| !! | ATAATACAGTTGATGGCACT+GGG | + | chr5_2:3343306-3343325 | Msa0749840:CDS | 35.0% |
| AGCCATAGTGAAGAAATCAA+AGG | - | chr5_2:3343490-3343509 | None:intergenic | 35.0% | |
| TTCTTCACTATGGCTCTTAT+TGG | + | chr5_2:3343495-3343514 | Msa0749840:intron | 35.0% | |
| ATGGTTCTTACCTTATTCTC+AGG | + | chr5_2:3343518-3343537 | Msa0749840:intron | 35.0% | |
| TCTTACCTTATTCTCAGGTT+CGG | + | chr5_2:3343523-3343542 | Msa0749840:intron | 35.0% | |
| !! | CATGTTGTTGATTTAGCTGA+TGG | + | chr5_2:3343555-3343574 | Msa0749840:CDS | 35.0% |
| GTTTATGCAATGCAGCAATA+TGG | - | chr5_2:3343581-3343600 | None:intergenic | 35.0% | |
| AAACTAGAAGAAGCTGACAT+AGG | + | chr5_2:3343597-3343616 | Msa0749840:CDS | 35.0% | |
| GCTGTGACGTTTATAACTTA+GGG | + | chr5_2:3343769-3343788 | Msa0749840:CDS | 35.0% | |
| TTATAACTTAGGGACAGGAA+AGG | + | chr5_2:3343779-3343798 | Msa0749840:CDS | 35.0% | |
| TATAACTTAGGGACAGGAAA+GGG | + | chr5_2:3343780-3343799 | Msa0749840:CDS | 35.0% | |
| ATAGATAGAGACATGCAAAG+TGG | + | chr5_2:3344104-3344123 | Msa0749840:intron | 35.0% | |
| AAGTGGCTACCAAATGTTAT+AGG | + | chr5_2:3344121-3344140 | Msa0749840:intron | 35.0% | |
| TTGGATAGAAAGAATCCTAG+AGG | - | chr5_2:3344161-3344180 | None:intergenic | 35.0% | |
| TCAGAAAATTCCACTTGTGA+AGG | + | chr5_2:3344311-3344330 | Msa0749840:intron | 35.0% | |
| TAAACAATTTCAGCATCACC+AGG | - | chr5_2:3344348-3344367 | None:intergenic | 35.0% | |
| AAGCTGAAAGAGAACTTAAG+TGG | + | chr5_2:3344382-3344401 | Msa0749840:CDS | 35.0% | |
| AAAGCCTGATCAGTTAGATA+AGG | - | chr5_2:3344419-3344438 | None:intergenic | 35.0% | |
| TCATTGTCCACTTTAATCTG+TGG | - | chr5_2:3344691-3344710 | None:intergenic | 35.0% | |
| TGCCATAGATGTTATGATCT+TGG | + | chr5_2:3344718-3344737 | Msa0749840:three_prime_UTR | 35.0% | |
| GCCATAGATGTTATGATCTT+GGG | + | chr5_2:3344719-3344738 | Msa0749840:three_prime_UTR | 35.0% | |
| ACCCAAGATCATAACATCTA+TGG | - | chr5_2:3344723-3344742 | None:intergenic | 35.0% | |
| ATAACCTATAACCTGTAAGG+TGG | - | chr5_2:3344926-3344945 | None:intergenic | 35.0% | |
| CATGTTCTACATGAACTTGA+TGG | + | chr5_2:3344967-3344986 | Msa0749840:three_prime_UTR | 35.0% | |
| !! | AACACGGTAAGAGTATTTGT+TGG | - | chr5_2:3345046-3345065 | None:intergenic | 35.0% |
| ! | ACCGTTCTTCAGCTTTTACT+CGG | + | chr5_2:3341336-3341355 | Msa0749840:CDS | 40.0% |
| TTTACTCGGCGGTTTCAAAA+CGG | + | chr5_2:3341350-3341369 | Msa0749840:CDS | 40.0% | |
| ! | AGAGCACCTTGTGAAAATTG+AGG | - | chr5_2:3341455-3341474 | None:intergenic | 40.0% |
| !!! | TGTAATTTTTGTGATGGCGG+TGG | + | chr5_2:3341590-3341609 | Msa0749840:intron | 40.0% |
| !!! | GTAATTTTTGTGATGGCGGT+GGG | + | chr5_2:3341591-3341610 | Msa0749840:intron | 40.0% |
| !!! | GATTATATTTTGGCCACTGC+AGG | + | chr5_2:3342119-3342138 | Msa0749840:intron | 40.0% |
| ! | AAAAATCGGCTCCTTCCATT+TGG | + | chr5_2:3342405-3342424 | Msa0749840:intron | 40.0% |
| ! | AACATGAAGCACCAAATGGA+AGG | - | chr5_2:3342419-3342438 | None:intergenic | 40.0% |
| ! | TTTTGCTGGAATGAAAGCAG+TGG | + | chr5_2:3342518-3342537 | Msa0749840:CDS | 40.0% |
| TTTGCTGGAATGAAAGCAGT+GGG | + | chr5_2:3342519-3342538 | Msa0749840:CDS | 40.0% | |
| ! | GATTGGGACAATCACTCTTT+TGG | + | chr5_2:3342584-3342603 | Msa0749840:CDS | 40.0% |
| GTGCATCTCATCCAAAAACA+AGG | - | chr5_2:3342646-3342665 | None:intergenic | 40.0% | |
| TCATCTTCAGCCACTGTATA+TGG | + | chr5_2:3342743-3342762 | Msa0749840:CDS | 40.0% | |
| AGAGGAAACTCTTCAGTACA+TGG | - | chr5_2:3342785-3342804 | None:intergenic | 40.0% | |
| ! | ATACCTTGGTTCGTCCATAT+GGG | - | chr5_2:3342820-3342839 | None:intergenic | 40.0% |
| ATTGAGATACTTCAACCCAG+TGG | + | chr5_2:3343163-3343182 | Msa0749840:CDS | 40.0% | |
| TTGAGATACTTCAACCCAGT+GGG | + | chr5_2:3343164-3343183 | Msa0749840:CDS | 40.0% | |
| CACACCCTAGTGGTTATATT+GGG | + | chr5_2:3343189-3343208 | Msa0749840:CDS | 40.0% | |
| ACACCCTAGTGGTTATATTG+GGG | + | chr5_2:3343190-3343209 | Msa0749840:CDS | 40.0% | |
| ! | AGATTATTTGGAATCCCGTG+AGG | - | chr5_2:3343221-3343240 | None:intergenic | 40.0% |
| GCCATTTATTCAGCAAGTAG+CGG | + | chr5_2:3343244-3343263 | Msa0749840:CDS | 40.0% | |
| ! | ACCGCTACTTGCTGAATAAA+TGG | - | chr5_2:3343248-3343267 | None:intergenic | 40.0% |
| TTTATTCAGCAAGTAGCGGT+TGG | + | chr5_2:3343248-3343267 | Msa0749840:CDS | 40.0% | |
| TTTCCAAAAACTGTCAGTGC+AGG | - | chr5_2:3343281-3343300 | None:intergenic | 40.0% | |
| !! | TAATACAGTTGATGGCACTG+GGG | + | chr5_2:3343307-3343326 | Msa0749840:CDS | 40.0% |
| CTTGAATAAACTGTCTGTCC+TGG | + | chr5_2:3343422-3343441 | Msa0749840:intron | 40.0% | |
| TCACTATGGCTCTTATTGGA+TGG | + | chr5_2:3343499-3343518 | Msa0749840:intron | 40.0% | |
| CTTACCTTATTCTCAGGTTC+GGG | + | chr5_2:3343524-3343543 | Msa0749840:intron | 40.0% | |
| TAATCCCGAACCTGAGAATA+AGG | - | chr5_2:3343531-3343550 | None:intergenic | 40.0% | |
| ATATTCATGCTGTGTGTGTC+TGG | + | chr5_2:3343742-3343761 | Msa0749840:intron | 40.0% | |
| GGCTGTGACGTTTATAACTT+AGG | + | chr5_2:3343768-3343787 | Msa0749840:intron | 40.0% | |
| GACGTTTATAACTTAGGGAC+AGG | + | chr5_2:3343774-3343793 | Msa0749840:CDS | 40.0% | |
| ! | AGGAAAGGGAACATCAGTTT+TGG | + | chr5_2:3343794-3343813 | Msa0749840:CDS | 40.0% |
| AGAGTTGACAGCAAGGATAA+AGG | - | chr5_2:3343886-3343905 | None:intergenic | 40.0% | |
| TGGAATTAGAGTTGACAGCA+AGG | - | chr5_2:3343893-3343912 | None:intergenic | 40.0% | |
| CGTATCCTTAACTACAGTTG+GGG | - | chr5_2:3344018-3344037 | None:intergenic | 40.0% | |
| GCGTATCCTTAACTACAGTT+GGG | - | chr5_2:3344019-3344038 | None:intergenic | 40.0% | |
| TGCGTATCCTTAACTACAGT+TGG | - | chr5_2:3344020-3344039 | None:intergenic | 40.0% | |
| AACTGAGACTATAGAGCAAC+TGG | - | chr5_2:3344059-3344078 | None:intergenic | 40.0% | |
| ! | AGTTGCCTCCCTTTTCTTTA+TGG | + | chr5_2:3344075-3344094 | Msa0749840:intron | 40.0% |
| AAAATTCCACTTGTGAAGGC+TGG | + | chr5_2:3344315-3344334 | Msa0749840:CDS | 40.0% | |
| GATATATTCTGGGTGTGGTT+TGG | + | chr5_2:3344514-3344533 | Msa0749840:intron | 40.0% | |
| ATGAAATGTGCCGTGATCAA+TGG | + | chr5_2:3344622-3344641 | Msa0749840:CDS | 40.0% | |
| TAGCCCAATTCCATTGATCA+CGG | - | chr5_2:3344635-3344654 | None:intergenic | 40.0% | |
| CCACTTTAATCTGTGGAATC+AGG | - | chr5_2:3344684-3344703 | None:intergenic | 40.0% | |
| CCTGATTCCACAGATTAAAG+TGG | + | chr5_2:3344681-3344700 | Msa0749840:exon | 40.0% | |
| AGAACCTATGGTGATTGATG+TGG | - | chr5_2:3344770-3344789 | None:intergenic | 40.0% | |
| ATATCTAGGTTCCACCTTAC+AGG | + | chr5_2:3344912-3344931 | Msa0749840:three_prime_UTR | 40.0% | |
| CAATTCTCGCTTCGCTTCAA+TGG | + | chr5_2:3341134-3341153 | Msa0749840:exon | 45.0% | |
| ! | AAAACCGTTCTAGTTACCGG+CGG | + | chr5_2:3341291-3341310 | Msa0749840:CDS | 45.0% |
| GTAAAAGCTGAAGAACGGTG+TGG | - | chr5_2:3341335-3341354 | None:intergenic | 45.0% | |
| GCCGAGTAAAAGCTGAAGAA+CGG | - | chr5_2:3341340-3341359 | None:intergenic | 45.0% | |
| ! | GTTCTTCAGCTTTTACTCGG+CGG | + | chr5_2:3341339-3341358 | Msa0749840:CDS | 45.0% |
| AAGGAACTCGCTGCTGAATT+TGG | + | chr5_2:3341423-3341442 | Msa0749840:CDS | 45.0% | |
| AGGAACTCGCTGCTGAATTT+GGG | + | chr5_2:3341424-3341443 | Msa0749840:CDS | 45.0% | |
| ! | TTAAGGGTGTGTTTGCGAGT+TGG | - | chr5_2:3342027-3342046 | None:intergenic | 45.0% |
| CTTCAGCCACTGTATATGGT+TGG | + | chr5_2:3342747-3342766 | Msa0749840:CDS | 45.0% | |
| TCAGTACATGGAACCTCCTT+CGG | - | chr5_2:3342773-3342792 | None:intergenic | 45.0% | |
| !! | TATGGGTTTGCTGCTGAAAG+AGG | - | chr5_2:3342803-3342822 | None:intergenic | 45.0% |
| CTTTCAGCAGCAAACCCATA+TGG | + | chr5_2:3342803-3342822 | Msa0749840:CDS | 45.0% | |
| AAACCCATATGGACGAACCA+AGG | + | chr5_2:3342814-3342833 | Msa0749840:CDS | 45.0% | |
| ! | CATACCTTGGTTCGTCCATA+TGG | - | chr5_2:3342821-3342840 | None:intergenic | 45.0% |
| GGACGAACCAAGGTATGATA+AGG | + | chr5_2:3342824-3342843 | Msa0749840:intron | 45.0% | |
| ! | TCAATCGTGCTGATCCAGAT+TGG | + | chr5_2:3343129-3343148 | Msa0749840:CDS | 45.0% |
| GCACACCCTAGTGGTTATAT+TGG | + | chr5_2:3343188-3343207 | Msa0749840:CDS | 45.0% | |
| CCTCCCCAATATAACCACTA+GGG | - | chr5_2:3343196-3343215 | None:intergenic | 45.0% | |
| TCCTCCCCAATATAACCACT+AGG | - | chr5_2:3343197-3343216 | None:intergenic | 45.0% | |
| TATATTGGGGAGGATCCTCA+CGG | + | chr5_2:3343203-3343222 | Msa0749840:CDS | 45.0% | |
| GGACACGAGTAAGTGTTAGA+AGG | - | chr5_2:3343650-3343669 | None:intergenic | 45.0% | |
| !!! | GGGAACATCAGTTTTGGAGA+TGG | + | chr5_2:3343800-3343819 | Msa0749840:CDS | 45.0% |
| ! | GATGGTAAGAGCTTTTGAGC+AGG | + | chr5_2:3343818-3343837 | Msa0749840:CDS | 45.0% |
| ! | TTTTGAGCAGGCATCTGGAA+AGG | + | chr5_2:3343830-3343849 | Msa0749840:CDS | 45.0% |
| CAAGGATAAAGGCGACAGAT+AGG | - | chr5_2:3343875-3343894 | None:intergenic | 45.0% | |
| AGTTGCCCCAACTGTAGTTA+AGG | + | chr5_2:3344010-3344029 | Msa0749840:intron | 45.0% | |
| GCACTCCATAAAGAAAAGGG+AGG | - | chr5_2:3344083-3344102 | None:intergenic | 45.0% | |
| ! | ATATTCTGGGTGTGGTTTGG+TGG | + | chr5_2:3344517-3344536 | Msa0749840:intron | 45.0% |
| TGATGTGGCAGGGCAAAATA+TGG | + | chr5_2:3344594-3344613 | Msa0749840:intron | 45.0% | |
| TGTGCCGTGATCAATGGAAT+TGG | + | chr5_2:3344628-3344647 | Msa0749840:CDS | 45.0% | |
| GTGCCGTGATCAATGGAATT+GGG | + | chr5_2:3344629-3344648 | Msa0749840:CDS | 45.0% | |
| !! | TGGGCTAGCAAAAACCCTTA+CGG | + | chr5_2:3344648-3344667 | Msa0749840:CDS | 45.0% |
| AGCAAAAACCCTTACGGCTA+TGG | + | chr5_2:3344654-3344673 | Msa0749840:CDS | 45.0% | |
| TCTGCCACATCAATCACCAT+AGG | + | chr5_2:3344763-3344782 | Msa0749840:three_prime_UTR | 45.0% | |
| GGTTCCACCTTACAGGTTAT+AGG | + | chr5_2:3344919-3344938 | Msa0749840:three_prime_UTR | 45.0% | |
| AGAGTAACAGATCAGCCACG+TGG | - | chr5_2:3340973-3340992 | None:intergenic | 50.0% | |
| GGCTGCTGCTACTATTTGAG+TGG | - | chr5_2:3342278-3342297 | None:intergenic | 50.0% | |
| TTGGAAGTCATGGCTGCTCA+TGG | + | chr5_2:3342603-3342622 | Msa0749840:CDS | 50.0% | |
| CTTCGGCCAACCATATACAG+TGG | - | chr5_2:3342756-3342775 | None:intergenic | 50.0% | |
| ! | CACTGTATATGGTTGGCCGA+AGG | + | chr5_2:3342754-3342773 | Msa0749840:CDS | 50.0% |
| ! | TGTATATGGTTGGCCGAAGG+AGG | + | chr5_2:3342757-3342776 | Msa0749840:CDS | 50.0% |
| CCCTAGTGGTTATATTGGGG+AGG | + | chr5_2:3343193-3343212 | Msa0749840:CDS | 50.0% | |
| ATATTGGGGAGGATCCTCAC+GGG | + | chr5_2:3343204-3343223 | Msa0749840:CDS | 50.0% | |
| !! | CGTCCTGCACTGACAGTTTT+TGG | + | chr5_2:3343275-3343294 | Msa0749840:CDS | 50.0% |
| !! | ACTGTCTGTCCTGGTTCTGT+TGG | + | chr5_2:3343431-3343450 | Msa0749840:intron | 50.0% |
| !! | CTGTCTGTCCTGGTTCTGTT+GGG | + | chr5_2:3343432-3343451 | Msa0749840:intron | 50.0% |
| TACATGCACCCAACAGAACC+AGG | - | chr5_2:3343443-3343462 | None:intergenic | 50.0% | |
| ! | AGAGCTTTTGAGCAGGCATC+TGG | + | chr5_2:3343825-3343844 | Msa0749840:CDS | 50.0% |
| TTTCAGCATCACCAGGCCTA+CGG | - | chr5_2:3344341-3344360 | None:intergenic | 50.0% | |
| CAGGAGATCCATAGCCGTAA+GGG | - | chr5_2:3344665-3344684 | None:intergenic | 50.0% | |
| TCAGGAGATCCATAGCCGTA+AGG | - | chr5_2:3344666-3344685 | None:intergenic | 50.0% | |
| GCTTCAATGGCTTCTCGCGT+CGG | + | chr5_2:3341147-3341166 | Msa0749840:exon | 55.0% | |
| ! | TCTCGCGTCGGCATCACTAA+TGG | + | chr5_2:3341159-3341178 | Msa0749840:CDS | 55.0% |
| GGTGTGGCTACCGATGTAAC+CGG | - | chr5_2:3341319-3341338 | None:intergenic | 55.0% | |
| GGCTGCTCATGGATGCAAGA+AGG | + | chr5_2:3342614-3342633 | Msa0749840:CDS | 55.0% | |
| CATGCTGTGTGTGTCTGGAC+AGG | + | chr5_2:3343747-3343766 | Msa0749840:intron | 55.0% | |
| GGCACCGCCGGTAACTAGAA+CGG | - | chr5_2:3341298-3341317 | None:intergenic | 60.0% | |
| ! | GTTCTAGTTACCGGCGGTGC+CGG | + | chr5_2:3341297-3341316 | Msa0749840:CDS | 60.0% |
| GGCCACTGCAGGTAGACATC+CGG | + | chr5_2:3342130-3342149 | Msa0749840:intron | 60.0% | |
| GCCACTGCAGGTAGACATCC+GGG | + | chr5_2:3342131-3342150 | Msa0749840:intron | 60.0% | |
| TCCCGGATGTCTACCTGCAG+TGG | - | chr5_2:3342135-3342154 | None:intergenic | 60.0% | |
| TGCAGGTAGACATCCGGGAC+AGG | + | chr5_2:3342136-3342155 | Msa0749840:intron | 60.0% | |
| GCAGGTAGACATCCGGGACA+GGG | + | chr5_2:3342137-3342156 | Msa0749840:intron | 60.0% | |
| CACTAGGGTGTGCACCCACT+GGG | - | chr5_2:3343181-3343200 | None:intergenic | 60.0% | |
| CTACGGCCAGCCTTCACAAG+TGG | - | chr5_2:3344324-3344343 | None:intergenic | 60.0% | |
| ! | CACTTGTGAAGGCTGGCCGT+AGG | + | chr5_2:3344322-3344341 | Msa0749840:CDS | 60.0% |
| !! | ACCGGCGGTGCCGGTTACAT+CGG | + | chr5_2:3341306-3341325 | Msa0749840:CDS | 65.0% |
| ACCGATGTAACCGGCACCGC+CGG | - | chr5_2:3341310-3341329 | None:intergenic | 65.0% | |
| GCTCAAGTGCAGCCCTGTCC+CGG | - | chr5_2:3342152-3342171 | None:intergenic | 65.0% | |
| CCACTAGGGTGTGCACCCAC+TGG | - | chr5_2:3343182-3343201 | None:intergenic | 65.0% | |
| CCAGTGGGTGCACACCCTAG+TGG | + | chr5_2:3343179-3343198 | Msa0749840:CDS | 65.0% | |
| ! | GTGAAGGCTGGCCGTAGGCC+TGG | + | chr5_2:3344327-3344346 | Msa0749840:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 3340963 | 3345130 | 3340963 | ID=Msa0749840;Name=Msa0749840 |
| chr5_2 | mRNA | 3340963 | 3345130 | 3340963 | ID=Msa0749840-mRNA-1;Parent=Msa0749840;Name=Msa0749840-mRNA-1;_AED=0.30;_eAED=0.30;_QI=190|1|1|1|1|1|9|432|392 |
| chr5_2 | exon | 3340963 | 3341467 | 3340963 | ID=Msa0749840-mRNA-1:exon:1159;Parent=Msa0749840-mRNA-1 |
| chr5_2 | exon | 3342141 | 3342190 | 3342141 | ID=Msa0749840-mRNA-1:exon:1160;Parent=Msa0749840-mRNA-1 |
| chr5_2 | exon | 3342500 | 3342635 | 3342500 | ID=Msa0749840-mRNA-1:exon:1161;Parent=Msa0749840-mRNA-1 |
| chr5_2 | exon | 3342734 | 3342835 | 3342734 | ID=Msa0749840-mRNA-1:exon:1162;Parent=Msa0749840-mRNA-1 |
| chr5_2 | exon | 3343101 | 3343328 | 3343101 | ID=Msa0749840-mRNA-1:exon:1163;Parent=Msa0749840-mRNA-1 |
| chr5_2 | exon | 3343540 | 3343618 | 3343540 | ID=Msa0749840-mRNA-1:exon:1164;Parent=Msa0749840-mRNA-1 |
| chr5_2 | exon | 3343769 | 3343851 | 3343769 | ID=Msa0749840-mRNA-1:exon:1165;Parent=Msa0749840-mRNA-1 |
| chr5_2 | exon | 3344315 | 3344406 | 3344315 | ID=Msa0749840-mRNA-1:exon:1166;Parent=Msa0749840-mRNA-1 |
| chr5_2 | exon | 3344605 | 3345130 | 3344605 | ID=Msa0749840-mRNA-1:exon:1167;Parent=Msa0749840-mRNA-1 |
| chr5_2 | five_prime_UTR | 3340963 | 3341152 | 3340963 | ID=Msa0749840-mRNA-1:five_prime_utr;Parent=Msa0749840-mRNA-1 |
| chr5_2 | CDS | 3341153 | 3341467 | 3341153 | ID=Msa0749840-mRNA-1:cds;Parent=Msa0749840-mRNA-1 |
| chr5_2 | CDS | 3342141 | 3342190 | 3342141 | ID=Msa0749840-mRNA-1:cds;Parent=Msa0749840-mRNA-1 |
| chr5_2 | CDS | 3342500 | 3342635 | 3342500 | ID=Msa0749840-mRNA-1:cds;Parent=Msa0749840-mRNA-1 |
| chr5_2 | CDS | 3342734 | 3342835 | 3342734 | ID=Msa0749840-mRNA-1:cds;Parent=Msa0749840-mRNA-1 |
| chr5_2 | CDS | 3343101 | 3343328 | 3343101 | ID=Msa0749840-mRNA-1:cds;Parent=Msa0749840-mRNA-1 |
| chr5_2 | CDS | 3343540 | 3343618 | 3343540 | ID=Msa0749840-mRNA-1:cds;Parent=Msa0749840-mRNA-1 |
| chr5_2 | CDS | 3343769 | 3343851 | 3343769 | ID=Msa0749840-mRNA-1:cds;Parent=Msa0749840-mRNA-1 |
| chr5_2 | CDS | 3344315 | 3344406 | 3344315 | ID=Msa0749840-mRNA-1:cds;Parent=Msa0749840-mRNA-1 |
| chr5_2 | CDS | 3344605 | 3344698 | 3344605 | ID=Msa0749840-mRNA-1:cds;Parent=Msa0749840-mRNA-1 |
| chr5_2 | three_prime_UTR | 3344699 | 3345130 | 3344699 | ID=Msa0749840-mRNA-1:three_prime_utr;Parent=Msa0749840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
