Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830180 | XP_003610981.1 | 97.194 | 392 | 11 | 0 | 1 | 392 | 1 | 392 | 0.0 | 795 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830180 | sp|O65781|GALE2_CYATE | 86.207 | 348 | 47 | 1 | 46 | 392 | 3 | 350 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830180 | G7K9B4 | 97.194 | 392 | 11 | 0 | 1 | 392 | 1 | 392 | 0.0 | 795 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030720 | Msa0830180 | 0.804252 | 2.361308e-49 | -8.615850e-47 |
| Msa0701100 | Msa0830180 | 0.808325 | 3.273958e-50 | -8.615850e-47 |
| Msa0749840 | Msa0830180 | 0.983502 | 6.414443e-158 | -8.615850e-47 |
| Msa0830180 | Msa0879950 | 0.810704 | 1.009616e-50 | -8.615850e-47 |
| Msa0830180 | Msa1013070 | 0.815369 | 9.575430e-52 | -8.615850e-47 |
| Msa0830180 | Msa1206100 | 0.805108 | 1.565278e-49 | -8.615850e-47 |
| Msa0830180 | Msa1208380 | 0.803023 | 4.247499e-49 | -8.615850e-47 |
| Msa0830180 | Msa1302550 | 0.803343 | 3.646985e-49 | -8.615850e-47 |
| Msa0830180 | Msa1329550 | 0.802399 | 5.715498e-49 | -8.615850e-47 |
| Msa0830180 | Msa1438840 | 0.808119 | 3.621628e-50 | -8.615850e-47 |
| Msa0243090 | Msa0830180 | 0.823614 | 1.259616e-53 | -8.615850e-47 |
| Msa0517210 | Msa0830180 | 0.810574 | 1.077324e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830180 | MtrunA17_Chr5g0396581 | 97.194 | 392 | 11 | 0 | 1 | 392 | 1 | 392 | 0.0 | 795 |
| Msa0830180 | MtrunA17_Chr5g0396571 | 92.219 | 347 | 27 | 0 | 46 | 392 | 3 | 349 | 0.0 | 681 |
| Msa0830180 | MtrunA17_Chr8g0388261 | 83.140 | 344 | 58 | 0 | 46 | 389 | 3 | 346 | 0.0 | 616 |
| Msa0830180 | MtrunA17_Chr4g0076751 | 66.570 | 344 | 113 | 2 | 44 | 385 | 22 | 365 | 2.63e-174 | 490 |
| Msa0830180 | MtrunA17_Chr8g0386331 | 66.286 | 350 | 115 | 3 | 42 | 388 | 1 | 350 | 6.52e-173 | 486 |
| Msa0830180 | MtrunA17_Chr8g0380921 | 42.614 | 352 | 180 | 6 | 49 | 389 | 73 | 413 | 3.17e-85 | 265 |
| Msa0830180 | MtrunA17_Chr2g0293521 | 42.486 | 346 | 185 | 6 | 49 | 387 | 73 | 411 | 1.88e-83 | 260 |
| Msa0830180 | MtrunA17_Chr1g0147841 | 28.732 | 355 | 212 | 14 | 43 | 386 | 1 | 325 | 6.77e-23 | 100 |
| Msa0830180 | MtrunA17_Chr4g0056941 | 27.701 | 361 | 217 | 13 | 35 | 377 | 85 | 419 | 1.29e-21 | 95.9 |
| Msa0830180 | MtrunA17_Chr8g0359401 | 27.635 | 351 | 213 | 14 | 47 | 386 | 7 | 327 | 2.05e-21 | 96.3 |
| Msa0830180 | MtrunA17_Chr7g0230291 | 26.515 | 396 | 239 | 14 | 14 | 379 | 41 | 414 | 2.73e-21 | 95.1 |
| Msa0830180 | MtrunA17_Chr4g0011281 | 26.593 | 361 | 228 | 12 | 38 | 379 | 91 | 433 | 1.95e-20 | 92.4 |
| Msa0830180 | MtrunA17_Chr4g0073351 | 27.119 | 354 | 223 | 13 | 48 | 386 | 96 | 429 | 2.23e-20 | 92.4 |
| Msa0830180 | MtrunA17_Chr2g0314601 | 26.781 | 351 | 216 | 14 | 47 | 386 | 7 | 327 | 7.02e-20 | 91.7 |
| Msa0830180 | MtrunA17_Chr3g0121661 | 26.377 | 345 | 220 | 12 | 48 | 377 | 100 | 425 | 2.32e-18 | 86.7 |
| Msa0830180 | MtrunA17_Chr5g0398811 | 25.000 | 348 | 221 | 12 | 48 | 377 | 91 | 416 | 4.08e-18 | 85.5 |
| Msa0830180 | MtrunA17_Chr1g0195521 | 24.054 | 370 | 234 | 15 | 13 | 364 | 82 | 422 | 3.30e-14 | 73.9 |
| Msa0830180 | MtrunA17_Chr4g0067461 | 25.449 | 334 | 197 | 16 | 45 | 369 | 109 | 399 | 3.41e-13 | 70.5 |
| Msa0830180 | MtrunA17_Chr4g0031131 | 25.469 | 373 | 215 | 14 | 8 | 369 | 6 | 326 | 1.17e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830180 | AT4G10960.1 | 82.405 | 341 | 60 | 0 | 47 | 387 | 4 | 344 | 0.0 | 600 |
| Msa0830180 | AT1G64440.1 | 77.907 | 344 | 75 | 1 | 49 | 391 | 5 | 348 | 0.0 | 582 |
| Msa0830180 | AT4G23920.1 | 80.060 | 336 | 67 | 0 | 47 | 382 | 3 | 338 | 0.0 | 579 |
| Msa0830180 | AT1G63180.1 | 66.862 | 341 | 111 | 2 | 47 | 385 | 7 | 347 | 4.84e-173 | 487 |
| Msa0830180 | AT1G12780.1 | 65.689 | 341 | 115 | 2 | 47 | 385 | 7 | 347 | 5.14e-170 | 479 |
| Msa0830180 | AT1G63180.2 | 64.746 | 295 | 101 | 3 | 47 | 338 | 7 | 301 | 2.46e-139 | 399 |
| Msa0830180 | AT1G30620.1 | 41.979 | 374 | 199 | 7 | 29 | 391 | 49 | 415 | 5.32e-87 | 270 |
| Msa0830180 | AT1G30620.6 | 41.979 | 374 | 199 | 7 | 29 | 391 | 49 | 415 | 5.32e-87 | 270 |
| Msa0830180 | AT1G30620.4 | 41.979 | 374 | 199 | 7 | 29 | 391 | 49 | 415 | 5.32e-87 | 270 |
| Msa0830180 | AT1G30620.2 | 41.979 | 374 | 199 | 7 | 29 | 391 | 49 | 415 | 5.32e-87 | 270 |
| Msa0830180 | AT1G30620.3 | 43.714 | 350 | 183 | 6 | 49 | 391 | 72 | 414 | 3.76e-86 | 268 |
| Msa0830180 | AT5G44480.3 | 41.429 | 350 | 183 | 6 | 49 | 387 | 73 | 411 | 3.21e-83 | 260 |
| Msa0830180 | AT5G44480.4 | 41.429 | 350 | 183 | 6 | 49 | 387 | 73 | 411 | 3.21e-83 | 260 |
| Msa0830180 | AT5G44480.2 | 41.429 | 350 | 183 | 6 | 49 | 387 | 73 | 411 | 3.21e-83 | 260 |
| Msa0830180 | AT5G44480.1 | 41.429 | 350 | 183 | 6 | 49 | 387 | 97 | 435 | 7.88e-83 | 260 |
| Msa0830180 | AT4G20460.1 | 42.775 | 346 | 184 | 6 | 49 | 387 | 72 | 410 | 1.95e-82 | 258 |
| Msa0830180 | AT1G30620.5 | 44.240 | 217 | 115 | 3 | 29 | 241 | 49 | 263 | 1.14e-52 | 177 |
| Msa0830180 | AT2G34850.3 | 41.702 | 235 | 124 | 5 | 160 | 387 | 1 | 229 | 2.36e-51 | 172 |
| Msa0830180 | AT2G34850.1 | 41.702 | 235 | 124 | 5 | 160 | 387 | 1 | 229 | 2.36e-51 | 172 |
| Msa0830180 | AT2G34850.4 | 41.702 | 235 | 124 | 5 | 160 | 387 | 1 | 229 | 2.36e-51 | 172 |
| Msa0830180 | AT2G34850.2 | 41.702 | 235 | 124 | 5 | 160 | 387 | 1 | 229 | 2.36e-51 | 172 |
| Msa0830180 | AT1G53500.1 | 27.066 | 351 | 215 | 14 | 47 | 386 | 9 | 329 | 4.33e-23 | 101 |
| Msa0830180 | AT1G02000.1 | 27.826 | 345 | 206 | 13 | 38 | 362 | 82 | 403 | 5.57e-22 | 97.4 |
| Msa0830180 | AT4G00110.1 | 27.844 | 334 | 199 | 12 | 48 | 362 | 92 | 402 | 5.94e-22 | 97.4 |
| Msa0830180 | AT2G45310.1 | 26.648 | 349 | 214 | 12 | 48 | 377 | 98 | 423 | 2.08e-21 | 95.9 |
| Msa0830180 | AT3G14790.2 | 26.781 | 351 | 216 | 13 | 47 | 386 | 10 | 330 | 2.14e-20 | 93.6 |
| Msa0830180 | AT3G14790.1 | 26.781 | 351 | 216 | 13 | 47 | 386 | 7 | 327 | 2.21e-20 | 93.6 |
| Msa0830180 | AT1G78570.1 | 26.781 | 351 | 216 | 14 | 47 | 386 | 7 | 327 | 2.67e-20 | 93.6 |
| Msa0830180 | AT3G23820.1 | 26.957 | 345 | 218 | 11 | 48 | 377 | 113 | 438 | 7.31e-19 | 88.6 |
| Msa0830180 | AT4G12250.1 | 26.513 | 347 | 217 | 11 | 48 | 377 | 97 | 422 | 6.92e-18 | 85.5 |
| Msa0830180 | AT4G30440.1 | 26.184 | 359 | 222 | 14 | 48 | 387 | 89 | 423 | 7.31e-16 | 79.3 |
| Msa0830180 | AT2G47650.1 | 26.455 | 378 | 221 | 18 | 12 | 373 | 86 | 422 | 1.38e-15 | 78.6 |
| Msa0830180 | AT2G47650.2 | 27.034 | 381 | 221 | 19 | 12 | 373 | 86 | 428 | 1.62e-15 | 78.2 |
| Msa0830180 | AT3G53520.1 | 23.747 | 379 | 242 | 14 | 3 | 369 | 70 | 413 | 1.45e-14 | 75.5 |
| Msa0830180 | AT3G53520.4 | 25.378 | 331 | 198 | 15 | 3 | 321 | 70 | 363 | 2.98e-13 | 71.2 |
| Msa0830180 | AT3G53520.2 | 23.747 | 379 | 240 | 15 | 3 | 369 | 70 | 411 | 7.71e-13 | 70.1 |
| Msa0830180 | AT2G28760.1 | 25.893 | 336 | 211 | 13 | 39 | 369 | 23 | 325 | 2.73e-11 | 64.7 |
| Msa0830180 | AT2G28760.2 | 25.893 | 336 | 211 | 13 | 39 | 369 | 23 | 325 | 2.73e-11 | 64.7 |
| Msa0830180 | AT2G28760.3 | 25.893 | 336 | 211 | 13 | 39 | 369 | 23 | 325 | 2.73e-11 | 64.7 |
| Msa0830180 | AT2G28760.4 | 25.824 | 364 | 229 | 14 | 14 | 369 | 26 | 356 | 3.66e-11 | 64.7 |
Find 127 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAACTCGCTGCTGAATT+TGG | 0.168833 | 5_4:-3228588 | Msa0830180:CDS |
| ATAAATGGCATAAGATTATT+TGG | 0.181549 | 5_4:+3226781 | None:intergenic |
| TGAAGAAAGAAGAATATTTA+TGG | 0.231607 | 5_4:+3229006 | None:intergenic |
| ATATCTAGGTTCCACCTTAC+AGG | 0.242626 | 5_4:-3225099 | Msa0830180:three_prime_UTR |
| ATAGGTTATTATTATATATA+AGG | 0.248011 | 5_4:-3225074 | Msa0830180:three_prime_UTR |
| ACCGCTACTTGCTGAATAAA+TGG | 0.272562 | 5_4:+3226766 | None:intergenic |
| AATTAGAATTACTACCGTTT+TGG | 0.279718 | 5_4:+3228766 | None:intergenic |
| GGTTCCACCTTACAGGTTAT+AGG | 0.285218 | 5_4:-3225092 | Msa0830180:three_prime_UTR |
| AGAAGAATATTTATGGTGAT+TGG | 0.292729 | 5_4:+3229013 | None:intergenic |
| CATACCTTGGTTCGTCCATA+TGG | 0.299595 | 5_4:+3227193 | None:intergenic |
| TGCCATAGATGTTATGATCT+TGG | 0.302207 | 5_4:-3225293 | Msa0830180:three_prime_UTR |
| GATTGGGACAATCACTCTTT+TGG | 0.302714 | 5_4:-3227427 | Msa0830180:CDS |
| ATGGGATTTGAGTTTAGTTT+AGG | 0.303793 | 5_4:+3228971 | None:intergenic |
| CACACCCTAGTGGTTATATT+GGG | 0.312315 | 5_4:-3226822 | Msa0830180:CDS |
| TTTACCATACTATAGTTTAC+AGG | 0.314846 | 5_4:-3225124 | Msa0830180:three_prime_UTR |
| TGGGAATATACTATGCTCTA+TGG | 0.320274 | 5_4:+3228952 | None:intergenic |
| GCACACCCTAGTGGTTATAT+TGG | 0.324849 | 5_4:-3226823 | Msa0830180:CDS |
| TCATCTTCAGCCACTGTATA+TGG | 0.330380 | 5_4:-3227268 | Msa0830180:CDS |
| CCACTTTAATCTGTGGAATC+AGG | 0.342821 | 5_4:+3225330 | None:intergenic |
| CAATTCTCGCTTCGCTTCAA+TGG | 0.344508 | 5_4:-3228877 | Msa0830180:exon |
| ACCCAAGATCATAACATCTA+TGG | 0.351243 | 5_4:+3225291 | None:intergenic |
| GAAGAATATTTATGGTGATT+GGG | 0.352498 | 5_4:+3229014 | None:intergenic |
| TACTACAACAACAACTTGAT+TGG | 0.354486 | 5_4:-3227444 | Msa0830180:CDS |
| TGATGTGGCAGGGCAAAATA+TGG | 0.355594 | 5_4:-3225417 | Msa0830180:intron |
| TGGAATGAAGAATTCTTAGA+AGG | 0.355786 | 5_4:+3228792 | None:intergenic |
| AGGAAAGGGAACATCAGTTT+TGG | 0.357526 | 5_4:-3226217 | Msa0830180:CDS |
| GCCATAGATGTTATGATCTT+GGG | 0.357704 | 5_4:-3225292 | Msa0830180:three_prime_UTR |
| AAATCAAATCACATAACTTT+CGG | 0.358397 | 5_4:-3228911 | Msa0830180:five_prime_UTR |
| AGGAACTCGCTGCTGAATTT+GGG | 0.373544 | 5_4:-3228587 | Msa0830180:CDS |
| CATGTTCTACATGAACTTGA+TGG | 0.404661 | 5_4:-3225044 | Msa0830180:three_prime_UTR |
| GTTTATGCAATGCAGCAATA+TGG | 0.405003 | 5_4:+3226433 | None:intergenic |
| ATAACCTGTAAACTATAGTA+TGG | 0.405799 | 5_4:+3225120 | None:intergenic |
| AACAAAACCGTTCTAGTTAC+CGG | 0.411332 | 5_4:-3228723 | Msa0830180:CDS |
| ATAGTTTACAGGTTATATCT+AGG | 0.411778 | 5_4:-3225113 | Msa0830180:three_prime_UTR |
| AATGATTATAATACAGTTGA+TGG | 0.415727 | 5_4:-3226712 | Msa0830180:CDS |
| TGTGCCGTGATCAATGGAAT+TGG | 0.420702 | 5_4:-3225383 | Msa0830180:CDS |
| TCTCGCGTCGGCATCACTAA+TGG | 0.429875 | 5_4:-3228852 | Msa0830180:CDS |
| TCAGTACATGGAACCTCCTT+CGG | 0.438588 | 5_4:+3227241 | None:intergenic |
| GGCTGTGACGTTTATAACTT+AGG | 0.439614 | 5_4:-3226243 | Msa0830180:CDS |
| AAGAATATTTATGGTGATTG+GGG | 0.443295 | 5_4:+3229015 | None:intergenic |
| AGTTGCTGTTCATAGAGTTA+AGG | 0.447776 | 5_4:-3228607 | Msa0830180:CDS |
| TTGGAAGTCATGGCTGCTCA+TGG | 0.451385 | 5_4:-3227408 | Msa0830180:CDS |
| GGCCACTGCAGGTAGACATC+CGG | 0.451531 | 5_4:-3227881 | Msa0830180:intron |
| ATAGTTTAGATTTACAAAAC+AGG | 0.451911 | 5_4:+3225018 | None:intergenic |
| GTGAAGGCTGGCCGTAGGCC+TGG | 0.454952 | 5_4:-3225684 | Msa0830180:CDS |
| CTTTCAGCAGCAAACCCATA+TGG | 0.460790 | 5_4:-3227208 | Msa0830180:CDS |
| ACTACAACAACAACTTGATT+GGG | 0.462398 | 5_4:-3227443 | Msa0830180:CDS |
| TAATATGAATATGAATGAAT+GGG | 0.464371 | 5_4:+3228933 | None:intergenic |
| CCACTAGGGTGTGCACCCAC+TGG | 0.468983 | 5_4:+3226832 | None:intergenic |
| TGCAGGTAGACATCCGGGAC+AGG | 0.471148 | 5_4:-3227875 | Msa0830180:intron |
| CACTAGGGTGTGCACCCACT+GGG | 0.471612 | 5_4:+3226833 | None:intergenic |
| TATAATACAGTTGATGGCAC+TGG | 0.475559 | 5_4:-3226706 | Msa0830180:CDS |
| TTAATATGAATATGAATGAA+TGG | 0.477568 | 5_4:+3228932 | None:intergenic |
| ATGAAATGTGCCGTGATCAA+TGG | 0.481865 | 5_4:-3225389 | Msa0830180:CDS |
| AACTAAATTCACAGAACCTA+TGG | 0.482890 | 5_4:+3225232 | None:intergenic |
| ATAATAACCTATAACCTGTA+AGG | 0.486058 | 5_4:+3225085 | None:intergenic |
| GCTCAAGTGCAGCCCTGTCC+CGG | 0.493218 | 5_4:+3227862 | None:intergenic |
| TCAATCGTGCTGATCCAGAT+TGG | 0.502291 | 5_4:-3226882 | Msa0830180:CDS |
| AAGCTGAAAGAGAACTTAAG+TGG | 0.503547 | 5_4:-3225629 | Msa0830180:CDS |
| TTTACTCGGCGGTTTCAAAA+CGG | 0.504395 | 5_4:-3228661 | Msa0830180:CDS |
| GACGTTTATAACTTAGGGAC+AGG | 0.505250 | 5_4:-3226237 | Msa0830180:CDS |
| TCAGAAAATTCCACTTGTGA+AGG | 0.507254 | 5_4:-3225700 | Msa0830180:intron |
| ATACCTTGGTTCGTCCATAT+GGG | 0.507726 | 5_4:+3227194 | None:intergenic |
| TATAACTTAGGGACAGGAAA+GGG | 0.507998 | 5_4:-3226231 | Msa0830180:CDS |
| TCTTCATTCCAAACCCAAAA+CGG | 0.510188 | 5_4:-3228780 | Msa0830180:CDS |
| GGGAATATACTATGCTCTAT+GGG | 0.514215 | 5_4:+3228953 | None:intergenic |
| ATAATACAGTTGATGGCACT+GGG | 0.520770 | 5_4:-3226705 | Msa0830180:CDS |
| CATGTTGTTGATTTAGCTGA+TGG | 0.521889 | 5_4:-3226456 | Msa0830180:CDS |
| GCTTCAATGGCTTCTCGCGT+CGG | 0.522264 | 5_4:-3228864 | Msa0830180:exon |
| TATGGGTTTGCTGCTGAAAG+AGG | 0.522622 | 5_4:+3227211 | None:intergenic |
| AAAATTCCACTTGTGAAGGC+TGG | 0.523612 | 5_4:-3225696 | Msa0830180:CDS |
| AGAGCACCTTGTGAAAATTG+AGG | 0.524145 | 5_4:+3228559 | None:intergenic |
| GGTGTGGCTACCGATGTAAC+CGG | 0.525888 | 5_4:+3228695 | None:intergenic |
| AACACGGTAAGAGTATTTGT+TGG | 0.526363 | 5_4:+3224968 | None:intergenic |
| AACTCTATGAACAGCAACTT+CGG | 0.528814 | 5_4:+3228611 | None:intergenic |
| GCTGTGACGTTTATAACTTA+GGG | 0.529207 | 5_4:-3226242 | Msa0830180:CDS |
| CCTGATTCCACAGATTAAAG+TGG | 0.531279 | 5_4:-3225330 | Msa0830180:exon |
| TCATTGTCCACTTTAATCTG+TGG | 0.538500 | 5_4:+3225323 | None:intergenic |
| ACCGATGTAACCGGCACCGC+CGG | 0.541899 | 5_4:+3228704 | None:intergenic |
| GTGCCGTGATCAATGGAATT+GGG | 0.542969 | 5_4:-3225382 | Msa0830180:CDS |
| CAGGAGATCCATAGCCGTAA+GGG | 0.545140 | 5_4:+3225349 | None:intergenic |
| AGAGGAAACTCTTCAGTACA+TGG | 0.546798 | 5_4:+3227229 | None:intergenic |
| GTTCTAGTTACCGGCGGTGC+CGG | 0.549409 | 5_4:-3228714 | Msa0830180:CDS |
| GCCACTGCAGGTAGACATCC+GGG | 0.559878 | 5_4:-3227880 | Msa0830180:intron |
| TTGTTGTTGTAGTAGAGTAA+CGG | 0.566441 | 5_4:+3227453 | None:intergenic |
| TCAGGAGATCCATAGCCGTA+AGG | 0.570852 | 5_4:+3225348 | None:intergenic |
| TTTATTCAGCAAGTAGCGGT+TGG | 0.573220 | 5_4:-3226763 | Msa0830180:CDS |
| TGAAGAGTTTAAATAAGAAG+AGG | 0.577484 | 5_4:+3228827 | None:intergenic |
| CTTCAGCCACTGTATATGGT+TGG | 0.578060 | 5_4:-3227264 | Msa0830180:CDS |
| TATATTGGGGAGGATCCTCA+CGG | 0.584038 | 5_4:-3226808 | Msa0830180:CDS |
| GCCATTTATTCAGCAAGTAG+CGG | 0.584484 | 5_4:-3226767 | Msa0830180:CDS |
| GGCTGCTCATGGATGCAAGA+AGG | 0.588720 | 5_4:-3227397 | Msa0830180:intron |
| AAACTAGAAGAAGCTGACAT+AGG | 0.589751 | 5_4:-3226414 | Msa0830180:intron |
| TGTATATGGTTGGCCGAAGG+AGG | 0.591711 | 5_4:-3227254 | Msa0830180:CDS |
| CACTGTATATGGTTGGCCGA+AGG | 0.593964 | 5_4:-3227257 | Msa0830180:CDS |
| CACTTGTGAAGGCTGGCCGT+AGG | 0.596509 | 5_4:-3225689 | Msa0830180:CDS |
| ATATTGGGGAGGATCCTCAC+GGG | 0.599402 | 5_4:-3226807 | Msa0830180:CDS |
| TTATAACTTAGGGACAGGAA+AGG | 0.600592 | 5_4:-3226232 | Msa0830180:CDS |
| TTTCAGCATCACCAGGCCTA+CGG | 0.603678 | 5_4:+3225673 | None:intergenic |
| TCCTCCCCAATATAACCACT+AGG | 0.607338 | 5_4:+3226817 | None:intergenic |
| TAAACAATTTCAGCATCACC+AGG | 0.611844 | 5_4:+3225666 | None:intergenic |
| TTGAGATACTTCAACCCAGT+GGG | 0.612544 | 5_4:-3226847 | Msa0830180:CDS |
| TAGCCCAATTCCATTGATCA+CGG | 0.615843 | 5_4:+3225379 | None:intergenic |
| CCCTAGTGGTTATATTGGGG+AGG | 0.615928 | 5_4:-3226818 | Msa0830180:CDS |
| ATAACCTATAACCTGTAAGG+TGG | 0.618440 | 5_4:+3225088 | None:intergenic |
| ACCGGCGGTGCCGGTTACAT+CGG | 0.627367 | 5_4:-3228705 | Msa0830180:CDS |
| CTACGGCCAGCCTTCACAAG+TGG | 0.628252 | 5_4:+3225690 | None:intergenic |
| GCAGGTAGACATCCGGGACA+GGG | 0.638284 | 5_4:-3227874 | Msa0830180:intron |
| TCTGCCACATCAATCACCAT+AGG | 0.643581 | 5_4:-3225248 | Msa0830180:three_prime_UTR |
| CCTCCCCAATATAACCACTA+GGG | 0.650185 | 5_4:+3226818 | None:intergenic |
| GCCGAGTAAAAGCTGAAGAA+CGG | 0.652299 | 5_4:+3228674 | None:intergenic |
| AGAATATTTATGGTGATTGG+GGG | 0.653476 | 5_4:+3229016 | None:intergenic |
| GGCACCGCCGGTAACTAGAA+CGG | 0.658798 | 5_4:+3228716 | None:intergenic |
| ACACCCTAGTGGTTATATTG+GGG | 0.659441 | 5_4:-3226821 | Msa0830180:CDS |
| TTTGCTGGAATGAAAGCAGT+GGG | 0.661073 | 5_4:-3227492 | Msa0830180:CDS |
| CCAGTGGGTGCACACCCTAG+TGG | 0.666271 | 5_4:-3226832 | Msa0830180:CDS |
| AAACCCATATGGACGAACCA+AGG | 0.674131 | 5_4:-3227197 | Msa0830180:intron |
| AGATTATTTGGAATCCCGTG+AGG | 0.688575 | 5_4:+3226793 | None:intergenic |
| AAGCTTAATCTAACATAACA+CGG | 0.695359 | 5_4:+3224952 | None:intergenic |
| AGAACCTATGGTGATTGATG+TGG | 0.696407 | 5_4:+3225244 | None:intergenic |
| CTTCGGCCAACCATATACAG+TGG | 0.701226 | 5_4:+3227258 | None:intergenic |
| ATTGAGATACTTCAACCCAG+TGG | 0.701880 | 5_4:-3226848 | Msa0830180:CDS |
| AGAGTAACAGATCAGCCACG+TGG | 0.727214 | 5_4:+3229041 | None:intergenic |
| GTAAAAGCTGAAGAACGGTG+TGG | 0.738273 | 5_4:+3228679 | None:intergenic |
| TAATACAGTTGATGGCACTG+GGG | 0.771630 | 5_4:-3226704 | Msa0830180:intron |
| AAAACCGTTCTAGTTACCGG+CGG | 0.775437 | 5_4:-3228720 | Msa0830180:CDS |
| GAACACACTGGAAATCCACG+TGG | 0.813066 | 5_4:-3229056 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTTAATAATAATGAAAAAT+CGG | - | chr5_4:3226331-3226350 | Msa0830180:intron | 10.0% |
| !! | AGAGAATAATAAAATATAAA+GGG | + | chr5_4:3228501-3228520 | None:intergenic | 10.0% |
| !! | TAGAGAATAATAAAATATAA+AGG | + | chr5_4:3228502-3228521 | None:intergenic | 10.0% |
| !! | ATAGGTTATTATTATATATA+AGG | - | chr5_4:3228877-3228896 | Msa0830180:exon | 10.0% |
| !! | TAATATGAATATGAATGAAT+GGG | + | chr5_4:3225021-3225040 | None:intergenic | 15.0% |
| !! | TTAATATGAATATGAATGAA+TGG | + | chr5_4:3225022-3225041 | None:intergenic | 15.0% |
| !!! | ATTGATAATTTTCTGAATTT+AGG | - | chr5_4:3225466-3225485 | Msa0830180:intron | 15.0% |
| !! | CTACAATAAAAGAATAAAAA+AGG | + | chr5_4:3226420-3226439 | None:intergenic | 15.0% |
| !!! | CTTTTTTATTCTTTTATTGT+AGG | - | chr5_4:3226418-3226437 | Msa0830180:CDS | 15.0% |
| !! | GAGAATAATAAAATATAAAG+GGG | + | chr5_4:3228500-3228519 | None:intergenic | 15.0% |
| !! | CTAAAAAAAATTATTTGATG+TGG | - | chr5_4:3228519-3228538 | Msa0830180:intron | 15.0% |
| !! | TGAAGAAAGAAGAATATTTA+TGG | + | chr5_4:3224948-3224967 | None:intergenic | 20.0% |
| !! | AAATCAAATCACATAACTTT+CGG | - | chr5_4:3225040-3225059 | Msa0830180:three_prime_UTR | 20.0% |
| !! | AATTGCAAAAATTCTTATCA+AGG | + | chr5_4:3225596-3225615 | None:intergenic | 20.0% |
| !!! | TTGCAATTTGATGTAATTTT+TGG | - | chr5_4:3225608-3225627 | Msa0830180:intron | 20.0% |
| !!! | TGCAATTTGATGTAATTTTT+GGG | - | chr5_4:3225609-3225628 | Msa0830180:intron | 20.0% |
| !!! | TTTGACTTTTCATGATAATT+CGG | - | chr5_4:3225710-3225729 | Msa0830180:intron | 20.0% |
| !!! | AATAATTTACTCTTGTTTAG+AGG | - | chr5_4:3225772-3225791 | Msa0830180:intron | 20.0% |
| !!! | ATAATTTACTCTTGTTTAGA+GGG | - | chr5_4:3225773-3225792 | Msa0830180:intron | 20.0% |
| !! | TACTGAGAATCAAAATAAAA+AGG | + | chr5_4:3226168-3226187 | None:intergenic | 20.0% |
| !! | TATGATAAGGAAATTGTTTA+GGG | - | chr5_4:3226777-3226796 | Msa0830180:CDS | 20.0% |
| !! | TGAAGTAGATGAATAATTTA+AGG | - | chr5_4:3226866-3226885 | Msa0830180:CDS | 20.0% |
| !! | GATAATTAGAAAGAATTTGA+AGG | + | chr5_4:3226898-3226917 | None:intergenic | 20.0% |
| !!! | AATAACATTATTTTCCAATC+TGG | + | chr5_4:3227086-3227105 | None:intergenic | 20.0% |
| !! | ATAAATGGCATAAGATTATT+TGG | + | chr5_4:3227173-3227192 | None:intergenic | 20.0% |
| !! | AATGATTATAATACAGTTGA+TGG | - | chr5_4:3227239-3227258 | Msa0830180:CDS | 20.0% |
| !!! | TTCAAGCAAAAATTTTAACA+GGG | + | chr5_4:3227348-3227367 | None:intergenic | 20.0% |
| !!! | ATTCAAGCAAAAATTTTAAC+AGG | + | chr5_4:3227349-3227368 | None:intergenic | 20.0% |
| !! | AGGTAAGATAATGATATATT+TGG | + | chr5_4:3227570-3227589 | None:intergenic | 20.0% |
| !!! | ATTGGAAAAAGAAAATTTTG+AGG | - | chr5_4:3227638-3227657 | Msa0830180:intron | 20.0% |
| !!! | AGTATTTTTGTTTTGAAAAG+TGG | + | chr5_4:3227853-3227872 | None:intergenic | 20.0% |
| !! | TATTTGATTCCTATAACATT+TGG | + | chr5_4:3228073-3228092 | None:intergenic | 20.0% |
| !! | TTCATCTTTATGATATATTC+TGG | - | chr5_4:3228443-3228462 | Msa0830180:intron | 20.0% |
| !! | TCATCTTTATGATATATTCT+GGG | - | chr5_4:3228444-3228463 | Msa0830180:intron | 20.0% |
| !! | ATAATAAAATATAAAGGGGT+AGG | + | chr5_4:3228496-3228515 | None:intergenic | 20.0% |
| !!! | TTTCTCTTATAGCATTTTAA+AGG | - | chr5_4:3228757-3228776 | Msa0830180:CDS | 20.0% |
| !! | ATAGTTTAGATTTACAAAAC+AGG | + | chr5_4:3228936-3228955 | None:intergenic | 20.0% |
| !!! | TCAAATTTTCATAAAATGCT+TGG | + | chr5_4:3229040-3229059 | None:intergenic | 20.0% |
| ! | AAGAATATTTATGGTGATTG+GGG | + | chr5_4:3224939-3224958 | None:intergenic | 25.0% |
| ! | GAAGAATATTTATGGTGATT+GGG | + | chr5_4:3224940-3224959 | None:intergenic | 25.0% |
| ! | AGAAGAATATTTATGGTGAT+TGG | + | chr5_4:3224941-3224960 | None:intergenic | 25.0% |
| ! | TGAAGAGTTTAAATAAGAAG+AGG | + | chr5_4:3225127-3225146 | None:intergenic | 25.0% |
| !! | ATTAGAATTACTACCGTTTT+GGG | + | chr5_4:3225187-3225206 | None:intergenic | 25.0% |
| !! | AATTAGAATTACTACCGTTT+TGG | + | chr5_4:3225188-3225207 | None:intergenic | 25.0% |
| ! | ATATACATATATAACGCTGA+AGG | + | chr5_4:3225436-3225455 | None:intergenic | 25.0% |
| !! | GATTTGTGTAATTTTTGTGA+TGG | - | chr5_4:3225524-3225543 | Msa0830180:intron | 25.0% |
| !! | GCAATTTGATGTAATTTTTG+GGG | - | chr5_4:3225610-3225629 | Msa0830180:intron | 25.0% |
| !! | TAATTTACTCTTGTTTAGAG+GGG | - | chr5_4:3225774-3225793 | Msa0830180:intron | 25.0% |
| !!! | TTTTTTCATAGGATTTTGGA+GGG | + | chr5_4:3225943-3225962 | None:intergenic | 25.0% |
| !!! | TTTTTTTCATAGGATTTTGG+AGG | + | chr5_4:3225944-3225963 | None:intergenic | 25.0% |
| !!! | TGGTTTTTTTCATAGGATTT+TGG | + | chr5_4:3225947-3225966 | None:intergenic | 25.0% |
| ! | AAAGCCAGAAGTAAAATTAA+GGG | + | chr5_4:3225983-3226002 | None:intergenic | 25.0% |
| !!! | AGACAGTTCTGATTATATTT+TGG | - | chr5_4:3226049-3226068 | Msa0830180:intron | 25.0% |
| ! | TTGATATAATCCTTACTTTG+TGG | + | chr5_4:3226127-3226146 | None:intergenic | 25.0% |
| ! | CAAAGACATTAGATAAGTTT+GGG | - | chr5_4:3226240-3226259 | Msa0830180:CDS | 25.0% |
| ! | GTATGATAAGGAAATTGTTT+AGG | - | chr5_4:3226776-3226795 | Msa0830180:CDS | 25.0% |
| ! | TTCAAAACCCCAAAAATATA+TGG | + | chr5_4:3226833-3226852 | None:intergenic | 25.0% |
| ! | AGTAGATGAATAATTTAAGG+AGG | - | chr5_4:3226869-3226888 | Msa0830180:CDS | 25.0% |
| ! | TACACGTGAAATAATCAAAA+CGG | + | chr5_4:3227300-3227319 | None:intergenic | 25.0% |
| !!! | AATTTTAACAGGGTACAAAT+GGG | + | chr5_4:3227338-3227357 | None:intergenic | 25.0% |
| !!! | AAATTTTAACAGGGTACAAA+TGG | + | chr5_4:3227339-3227358 | None:intergenic | 25.0% |
| ! | GCATGAATATTAAATACGTA+AGG | + | chr5_4:3227672-3227691 | None:intergenic | 25.0% |
| ! | GGAAAGGTAATAACTTTATT+TGG | - | chr5_4:3227786-3227805 | Msa0830180:intron | 25.0% |
| ! | TATTCGAACACAAAATATCT+TGG | + | chr5_4:3227928-3227947 | None:intergenic | 25.0% |
| !! | GAATCAAATAATTTTCCTCT+AGG | - | chr5_4:3228083-3228102 | Msa0830180:intron | 25.0% |
| !! | TGTCGATTAAAGATTAAGTT+TGG | + | chr5_4:3228120-3228139 | None:intergenic | 25.0% |
| ! | TAATCTTTAATCGACAATCA+CGG | - | chr5_4:3228124-3228143 | Msa0830180:intron | 25.0% |
| ! | TTCCTTTCTAATATCATGTA+AGG | - | chr5_4:3228377-3228396 | Msa0830180:intron | 25.0% |
| ! | AAAAAATTATTTGATGTGGC+AGG | - | chr5_4:3228523-3228542 | Msa0830180:intron | 25.0% |
| ! | AAAAATTATTTGATGTGGCA+GGG | - | chr5_4:3228524-3228543 | Msa0830180:intron | 25.0% |
| ! | TTTACCATACTATAGTTTAC+AGG | - | chr5_4:3228827-3228846 | Msa0830180:CDS | 25.0% |
| ! | ATAACCTGTAAACTATAGTA+TGG | + | chr5_4:3228834-3228853 | None:intergenic | 25.0% |
| ! | ATAGTTTACAGGTTATATCT+AGG | - | chr5_4:3228838-3228857 | Msa0830180:CDS | 25.0% |
| ! | ATAATAACCTATAACCTGTA+AGG | + | chr5_4:3228869-3228888 | None:intergenic | 25.0% |
| ! | AAGCTTAATCTAACATAACA+CGG | + | chr5_4:3229002-3229021 | None:intergenic | 25.0% |
| AGAATATTTATGGTGATTGG+GGG | + | chr5_4:3224938-3224957 | None:intergenic | 30.0% | |
| ! | ATGGGATTTGAGTTTAGTTT+AGG | + | chr5_4:3224983-3225002 | None:intergenic | 30.0% |
| TGGAATGAAGAATTCTTAGA+AGG | + | chr5_4:3225162-3225181 | None:intergenic | 30.0% | |
| ! | GAATAACCTCAATTTTCACA+AGG | - | chr5_4:3225386-3225405 | Msa0830180:CDS | 30.0% |
| ! | TTGTGTAATTTTTGTGATGG+CGG | - | chr5_4:3225527-3225546 | Msa0830180:intron | 30.0% |
| GAAAGCTCAAAAGCAATATT+TGG | + | chr5_4:3225664-3225683 | None:intergenic | 30.0% | |
| GAAAGCCAGAAGTAAAATTA+AGG | + | chr5_4:3225984-3226003 | None:intergenic | 30.0% | |
| ! | ATTTTTGCTTCCACAAAGTA+AGG | - | chr5_4:3226114-3226133 | Msa0830180:intron | 30.0% |
| AACTTATCTAATGTCTTTGC+AGG | + | chr5_4:3226239-3226258 | None:intergenic | 30.0% | |
| GCAAAGACATTAGATAAGTT+TGG | - | chr5_4:3226239-3226258 | Msa0830180:CDS | 30.0% | |
| AGAATCTCACACATTAAATG+TGG | + | chr5_4:3226295-3226314 | None:intergenic | 30.0% | |
| ! | TTGTTGTTGTAGTAGAGTAA+CGG | + | chr5_4:3226501-3226520 | None:intergenic | 30.0% |
| TACTACAACAACAACTTGAT+TGG | - | chr5_4:3226507-3226526 | Msa0830180:intron | 30.0% | |
| ACTACAACAACAACTTGATT+GGG | - | chr5_4:3226508-3226527 | Msa0830180:intron | 30.0% | |
| ACAATTTCCTTATCATACCT+TGG | + | chr5_4:3226774-3226793 | None:intergenic | 30.0% | |
| ! | TGTCTCTGCCATATATTTTT+GGG | - | chr5_4:3226822-3226841 | Msa0830180:CDS | 30.0% |
| ! | TACCTTTGATTTCTTCACTA+TGG | - | chr5_4:3227425-3227444 | Msa0830180:CDS | 30.0% |
| !!! | CGAGTAAGTGTTTTTTTGAA+AGG | + | chr5_4:3227611-3227630 | None:intergenic | 30.0% |
| !! | ACACTTACTCGTTTTGTTAT+TGG | - | chr5_4:3227620-3227639 | Msa0830180:intron | 30.0% |
| !!! | AAAAGAAAATTTTGAGGCAG+TGG | - | chr5_4:3227644-3227663 | Msa0830180:intron | 30.0% |
| !! | CACATGCTTTTATTTCTTTG+CGG | - | chr5_4:3227879-3227898 | Msa0830180:intron | 30.0% |
| ATAGCACTCCATAAAGAAAA+GGG | + | chr5_4:3228026-3228045 | None:intergenic | 30.0% | |
| TATAGCACTCCATAAAGAAA+AGG | + | chr5_4:3228027-3228046 | None:intergenic | 30.0% | |
| GCTCAATGTTATACATGATT+TGG | + | chr5_4:3228189-3228208 | None:intergenic | 30.0% | |
| !!! | TTCTCTTTCAGCTTTTTTTG+TGG | + | chr5_4:3228316-3228335 | None:intergenic | 30.0% |
| TATTCCTTATCTAACTGATC+AGG | - | chr5_4:3228352-3228371 | Msa0830180:intron | 30.0% | |
| GTCCTTACATGATATTAGAA+AGG | + | chr5_4:3228382-3228401 | None:intergenic | 30.0% | |
| TTCTAATATCATGTAAGGAC+TGG | - | chr5_4:3228382-3228401 | Msa0830180:intron | 30.0% | |
| TCTAATATCATGTAAGGACT+GGG | - | chr5_4:3228383-3228402 | Msa0830180:intron | 30.0% | |
| TTTATGATATATTCTGGGTG+TGG | - | chr5_4:3228449-3228468 | Msa0830180:intron | 30.0% | |
| AACTAAATTCACAGAACCTA+TGG | + | chr5_4:3228722-3228741 | None:intergenic | 30.0% | |
| CTATAAGAGAAAAAGAGCTT+CGG | + | chr5_4:3228749-3228768 | None:intergenic | 30.0% | |
| GGGAATATACTATGCTCTAT+GGG | + | chr5_4:3225001-3225020 | None:intergenic | 35.0% | |
| TGGGAATATACTATGCTCTA+TGG | + | chr5_4:3225002-3225021 | None:intergenic | 35.0% | |
| TCTTCATTCCAAACCCAAAA+CGG | - | chr5_4:3225171-3225190 | Msa0830180:three_prime_UTR | 35.0% | |
| !!! | AATTACTACCGTTTTGGGTT+TGG | + | chr5_4:3225182-3225201 | None:intergenic | 35.0% |
| ! | AACAAAACCGTTCTAGTTAC+CGG | - | chr5_4:3225228-3225247 | Msa0830180:three_prime_UTR | 35.0% |
| AACTCTATGAACAGCAACTT+CGG | + | chr5_4:3225343-3225362 | None:intergenic | 35.0% | |
| ! | AGTTGCTGTTCATAGAGTTA+AGG | - | chr5_4:3225344-3225363 | Msa0830180:CDS | 35.0% |
| CTGAAGGTAAAAAATCGCAA+CGG | + | chr5_4:3225420-3225439 | None:intergenic | 35.0% | |
| TTAGAGGGGAACAATTTAGA+TGG | - | chr5_4:3225788-3225807 | Msa0830180:intron | 35.0% | |
| !!! | TGCGAGTTGGTTTTTTTCAT+AGG | + | chr5_4:3225954-3225973 | None:intergenic | 35.0% |
| ! | CACACCCTTAATTTTACTTC+TGG | - | chr5_4:3225976-3225995 | Msa0830180:intron | 35.0% |
| ! | TGTTTGCAGTTTGTTCAGTA+TGG | - | chr5_4:3226019-3226038 | Msa0830180:intron | 35.0% |
| ACATTAAATGTGGAGAAGTG+TGG | + | chr5_4:3226285-3226304 | None:intergenic | 35.0% | |
| ! | AGATAACATGAAGCACCAAA+TGG | + | chr5_4:3226363-3226382 | None:intergenic | 35.0% |
| ! | GATGCAGTTATACATTTTGC+TGG | - | chr5_4:3226444-3226463 | Msa0830180:CDS | 35.0% |
| !! | AATCACTCTTTTGGAAGTCA+TGG | - | chr5_4:3226533-3226552 | Msa0830180:intron | 35.0% |
| !!! | GAAGGTAAGTTCCTTGTTTT+TGG | - | chr5_4:3226572-3226591 | Msa0830180:intron | 35.0% |
| ! | CTGTCTCTGCCATATATTTT+TGG | - | chr5_4:3226821-3226840 | Msa0830180:CDS | 35.0% |
| !! | GTCTCTGCCATATATTTTTG+GGG | - | chr5_4:3226823-3226842 | Msa0830180:CDS | 35.0% |
| !! | TATAATACAGTTGATGGCAC+TGG | - | chr5_4:3227245-3227264 | Msa0830180:CDS | 35.0% |
| !! | ATAATACAGTTGATGGCACT+GGG | - | chr5_4:3227246-3227265 | Msa0830180:CDS | 35.0% |
| AGCCATAGTGAAGAAATCAA+AGG | + | chr5_4:3227430-3227449 | None:intergenic | 35.0% | |
| TTCTTCACTATGGCTCTTAT+TGG | - | chr5_4:3227435-3227454 | Msa0830180:CDS | 35.0% | |
| ATGGTTCTTACCTTATTCTC+AGG | - | chr5_4:3227458-3227477 | Msa0830180:CDS | 35.0% | |
| TCTTACCTTATTCTCAGGTT+CGG | - | chr5_4:3227463-3227482 | Msa0830180:CDS | 35.0% | |
| !! | CATGTTGTTGATTTAGCTGA+TGG | - | chr5_4:3227495-3227514 | Msa0830180:CDS | 35.0% |
| GTTTATGCAATGCAGCAATA+TGG | + | chr5_4:3227521-3227540 | None:intergenic | 35.0% | |
| AAACTAGAAGAAGCTGACAT+AGG | - | chr5_4:3227537-3227556 | Msa0830180:intron | 35.0% | |
| GCTGTGACGTTTATAACTTA+GGG | - | chr5_4:3227709-3227728 | Msa0830180:intron | 35.0% | |
| TTATAACTTAGGGACAGGAA+AGG | - | chr5_4:3227719-3227738 | Msa0830180:intron | 35.0% | |
| TATAACTTAGGGACAGGAAA+GGG | - | chr5_4:3227720-3227739 | Msa0830180:intron | 35.0% | |
| ATAGATAGAGACATGCAAAG+TGG | - | chr5_4:3228044-3228063 | Msa0830180:intron | 35.0% | |
| AAGTGGCTACCAAATGTTAT+AGG | - | chr5_4:3228061-3228080 | Msa0830180:intron | 35.0% | |
| TTGGATAGAAAGAATCCTAG+AGG | + | chr5_4:3228101-3228120 | None:intergenic | 35.0% | |
| TCAGAAAATTCCACTTGTGA+AGG | - | chr5_4:3228251-3228270 | Msa0830180:intron | 35.0% | |
| TAAACAATTTCAGCATCACC+AGG | + | chr5_4:3228288-3228307 | None:intergenic | 35.0% | |
| AAGCTGAAAGAGAACTTAAG+TGG | - | chr5_4:3228322-3228341 | Msa0830180:intron | 35.0% | |
| AAAGCCTGATCAGTTAGATA+AGG | + | chr5_4:3228359-3228378 | None:intergenic | 35.0% | |
| TCATTGTCCACTTTAATCTG+TGG | + | chr5_4:3228631-3228650 | None:intergenic | 35.0% | |
| TGCCATAGATGTTATGATCT+TGG | - | chr5_4:3228658-3228677 | Msa0830180:CDS | 35.0% | |
| GCCATAGATGTTATGATCTT+GGG | - | chr5_4:3228659-3228678 | Msa0830180:CDS | 35.0% | |
| ACCCAAGATCATAACATCTA+TGG | + | chr5_4:3228663-3228682 | None:intergenic | 35.0% | |
| ATAACCTATAACCTGTAAGG+TGG | + | chr5_4:3228866-3228885 | None:intergenic | 35.0% | |
| CATGTTCTACATGAACTTGA+TGG | - | chr5_4:3228907-3228926 | Msa0830180:five_prime_UTR | 35.0% | |
| !! | AACACGGTAAGAGTATTTGT+TGG | + | chr5_4:3228986-3229005 | None:intergenic | 35.0% |
| ! | ACCGTTCTTCAGCTTTTACT+CGG | - | chr5_4:3225276-3225295 | Msa0830180:three_prime_UTR | 40.0% |
| TTTACTCGGCGGTTTCAAAA+CGG | - | chr5_4:3225290-3225309 | Msa0830180:three_prime_UTR | 40.0% | |
| ! | AGAGCACCTTGTGAAAATTG+AGG | + | chr5_4:3225395-3225414 | None:intergenic | 40.0% |
| !!! | TGTAATTTTTGTGATGGCGG+TGG | - | chr5_4:3225530-3225549 | Msa0830180:intron | 40.0% |
| !!! | GTAATTTTTGTGATGGCGGT+GGG | - | chr5_4:3225531-3225550 | Msa0830180:intron | 40.0% |
| !!! | GATTATATTTTGGCCACTGC+AGG | - | chr5_4:3226059-3226078 | Msa0830180:intron | 40.0% |
| ! | AAAAATCGGCTCCTTCCATT+TGG | - | chr5_4:3226345-3226364 | Msa0830180:intron | 40.0% |
| ! | AACATGAAGCACCAAATGGA+AGG | + | chr5_4:3226359-3226378 | None:intergenic | 40.0% |
| ! | TTTTGCTGGAATGAAAGCAG+TGG | - | chr5_4:3226458-3226477 | Msa0830180:CDS | 40.0% |
| TTTGCTGGAATGAAAGCAGT+GGG | - | chr5_4:3226459-3226478 | Msa0830180:CDS | 40.0% | |
| ! | GATTGGGACAATCACTCTTT+TGG | - | chr5_4:3226524-3226543 | Msa0830180:intron | 40.0% |
| GTGCATCTCATCCAAAAACA+AGG | + | chr5_4:3226586-3226605 | None:intergenic | 40.0% | |
| TCATCTTCAGCCACTGTATA+TGG | - | chr5_4:3226683-3226702 | Msa0830180:intron | 40.0% | |
| AGAGGAAACTCTTCAGTACA+TGG | + | chr5_4:3226725-3226744 | None:intergenic | 40.0% | |
| ! | ATACCTTGGTTCGTCCATAT+GGG | + | chr5_4:3226760-3226779 | None:intergenic | 40.0% |
| ATTGAGATACTTCAACCCAG+TGG | - | chr5_4:3227103-3227122 | Msa0830180:intron | 40.0% | |
| TTGAGATACTTCAACCCAGT+GGG | - | chr5_4:3227104-3227123 | Msa0830180:intron | 40.0% | |
| CACACCCTAGTGGTTATATT+GGG | - | chr5_4:3227129-3227148 | Msa0830180:intron | 40.0% | |
| ACACCCTAGTGGTTATATTG+GGG | - | chr5_4:3227130-3227149 | Msa0830180:intron | 40.0% | |
| ! | AGATTATTTGGAATCCCGTG+AGG | + | chr5_4:3227161-3227180 | None:intergenic | 40.0% |
| GCCATTTATTCAGCAAGTAG+CGG | - | chr5_4:3227184-3227203 | Msa0830180:intron | 40.0% | |
| ! | ACCGCTACTTGCTGAATAAA+TGG | + | chr5_4:3227188-3227207 | None:intergenic | 40.0% |
| TTTATTCAGCAAGTAGCGGT+TGG | - | chr5_4:3227188-3227207 | Msa0830180:intron | 40.0% | |
| TTTCCAAAAACTGTCAGTGC+AGG | + | chr5_4:3227221-3227240 | None:intergenic | 40.0% | |
| !! | TAATACAGTTGATGGCACTG+GGG | - | chr5_4:3227247-3227266 | Msa0830180:CDS | 40.0% |
| CTTGAATAAACTGTCTGTCC+TGG | - | chr5_4:3227362-3227381 | Msa0830180:intron | 40.0% | |
| TCACTATGGCTCTTATTGGA+TGG | - | chr5_4:3227439-3227458 | Msa0830180:CDS | 40.0% | |
| CTTACCTTATTCTCAGGTTC+GGG | - | chr5_4:3227464-3227483 | Msa0830180:CDS | 40.0% | |
| TAATCCCGAACCTGAGAATA+AGG | + | chr5_4:3227471-3227490 | None:intergenic | 40.0% | |
| ATATTCATGCTGTGTGTGTC+TGG | - | chr5_4:3227682-3227701 | Msa0830180:intron | 40.0% | |
| GGCTGTGACGTTTATAACTT+AGG | - | chr5_4:3227708-3227727 | Msa0830180:intron | 40.0% | |
| GACGTTTATAACTTAGGGAC+AGG | - | chr5_4:3227714-3227733 | Msa0830180:intron | 40.0% | |
| ! | AGGAAAGGGAACATCAGTTT+TGG | - | chr5_4:3227734-3227753 | Msa0830180:intron | 40.0% |
| AGAGTTGACAGCAAGGATAA+AGG | + | chr5_4:3227826-3227845 | None:intergenic | 40.0% | |
| TGGAATTAGAGTTGACAGCA+AGG | + | chr5_4:3227833-3227852 | None:intergenic | 40.0% | |
| CGTATCCTTAACTACAGTTG+GGG | + | chr5_4:3227958-3227977 | None:intergenic | 40.0% | |
| GCGTATCCTTAACTACAGTT+GGG | + | chr5_4:3227959-3227978 | None:intergenic | 40.0% | |
| TGCGTATCCTTAACTACAGT+TGG | + | chr5_4:3227960-3227979 | None:intergenic | 40.0% | |
| AACTGAGACTATAGAGCAAC+TGG | + | chr5_4:3227999-3228018 | None:intergenic | 40.0% | |
| ! | AGTTGCCTCCCTTTTCTTTA+TGG | - | chr5_4:3228015-3228034 | Msa0830180:intron | 40.0% |
| AAAATTCCACTTGTGAAGGC+TGG | - | chr5_4:3228255-3228274 | Msa0830180:intron | 40.0% | |
| GATATATTCTGGGTGTGGTT+TGG | - | chr5_4:3228454-3228473 | Msa0830180:intron | 40.0% | |
| ATGAAATGTGCCGTGATCAA+TGG | - | chr5_4:3228562-3228581 | Msa0830180:intron | 40.0% | |
| TAGCCCAATTCCATTGATCA+CGG | + | chr5_4:3228575-3228594 | None:intergenic | 40.0% | |
| CCACTTTAATCTGTGGAATC+AGG | + | chr5_4:3228624-3228643 | None:intergenic | 40.0% | |
| CCTGATTCCACAGATTAAAG+TGG | - | chr5_4:3228621-3228640 | Msa0830180:CDS | 40.0% | |
| AGAACCTATGGTGATTGATG+TGG | + | chr5_4:3228710-3228729 | None:intergenic | 40.0% | |
| ATATCTAGGTTCCACCTTAC+AGG | - | chr5_4:3228852-3228871 | Msa0830180:CDS | 40.0% | |
| CAATTCTCGCTTCGCTTCAA+TGG | - | chr5_4:3225074-3225093 | Msa0830180:three_prime_UTR | 45.0% | |
| ! | AAAACCGTTCTAGTTACCGG+CGG | - | chr5_4:3225231-3225250 | Msa0830180:three_prime_UTR | 45.0% |
| GTAAAAGCTGAAGAACGGTG+TGG | + | chr5_4:3225275-3225294 | None:intergenic | 45.0% | |
| GCCGAGTAAAAGCTGAAGAA+CGG | + | chr5_4:3225280-3225299 | None:intergenic | 45.0% | |
| ! | GTTCTTCAGCTTTTACTCGG+CGG | - | chr5_4:3225279-3225298 | Msa0830180:three_prime_UTR | 45.0% |
| AAGGAACTCGCTGCTGAATT+TGG | - | chr5_4:3225363-3225382 | Msa0830180:CDS | 45.0% | |
| AGGAACTCGCTGCTGAATTT+GGG | - | chr5_4:3225364-3225383 | Msa0830180:CDS | 45.0% | |
| ! | TTAAGGGTGTGTTTGCGAGT+TGG | + | chr5_4:3225967-3225986 | None:intergenic | 45.0% |
| CTTCAGCCACTGTATATGGT+TGG | - | chr5_4:3226687-3226706 | Msa0830180:intron | 45.0% | |
| TCAGTACATGGAACCTCCTT+CGG | + | chr5_4:3226713-3226732 | None:intergenic | 45.0% | |
| !! | TATGGGTTTGCTGCTGAAAG+AGG | + | chr5_4:3226743-3226762 | None:intergenic | 45.0% |
| CTTTCAGCAGCAAACCCATA+TGG | - | chr5_4:3226743-3226762 | Msa0830180:CDS | 45.0% | |
| AAACCCATATGGACGAACCA+AGG | - | chr5_4:3226754-3226773 | Msa0830180:CDS | 45.0% | |
| ! | CATACCTTGGTTCGTCCATA+TGG | + | chr5_4:3226761-3226780 | None:intergenic | 45.0% |
| GGACGAACCAAGGTATGATA+AGG | - | chr5_4:3226764-3226783 | Msa0830180:CDS | 45.0% | |
| ! | TCAATCGTGCTGATCCAGAT+TGG | - | chr5_4:3227069-3227088 | Msa0830180:intron | 45.0% |
| GCACACCCTAGTGGTTATAT+TGG | - | chr5_4:3227128-3227147 | Msa0830180:intron | 45.0% | |
| CCTCCCCAATATAACCACTA+GGG | + | chr5_4:3227136-3227155 | None:intergenic | 45.0% | |
| TCCTCCCCAATATAACCACT+AGG | + | chr5_4:3227137-3227156 | None:intergenic | 45.0% | |
| TATATTGGGGAGGATCCTCA+CGG | - | chr5_4:3227143-3227162 | Msa0830180:intron | 45.0% | |
| GGACACGAGTAAGTGTTAGA+AGG | + | chr5_4:3227590-3227609 | None:intergenic | 45.0% | |
| !!! | GGGAACATCAGTTTTGGAGA+TGG | - | chr5_4:3227740-3227759 | Msa0830180:intron | 45.0% |
| ! | GATGGTAAGAGCTTTTGAGC+AGG | - | chr5_4:3227758-3227777 | Msa0830180:intron | 45.0% |
| ! | TTTTGAGCAGGCATCTGGAA+AGG | - | chr5_4:3227770-3227789 | Msa0830180:intron | 45.0% |
| CAAGGATAAAGGCGACAGAT+AGG | + | chr5_4:3227815-3227834 | None:intergenic | 45.0% | |
| AGTTGCCCCAACTGTAGTTA+AGG | - | chr5_4:3227950-3227969 | Msa0830180:intron | 45.0% | |
| GCACTCCATAAAGAAAAGGG+AGG | + | chr5_4:3228023-3228042 | None:intergenic | 45.0% | |
| ! | ATATTCTGGGTGTGGTTTGG+TGG | - | chr5_4:3228457-3228476 | Msa0830180:intron | 45.0% |
| TGATGTGGCAGGGCAAAATA+TGG | - | chr5_4:3228534-3228553 | Msa0830180:intron | 45.0% | |
| TGTGCCGTGATCAATGGAAT+TGG | - | chr5_4:3228568-3228587 | Msa0830180:CDS | 45.0% | |
| GTGCCGTGATCAATGGAATT+GGG | - | chr5_4:3228569-3228588 | Msa0830180:CDS | 45.0% | |
| !! | TGGGCTAGCAAAAACCCTTA+CGG | - | chr5_4:3228588-3228607 | Msa0830180:CDS | 45.0% |
| AGCAAAAACCCTTACGGCTA+TGG | - | chr5_4:3228594-3228613 | Msa0830180:CDS | 45.0% | |
| TCTGCCACATCAATCACCAT+AGG | - | chr5_4:3228703-3228722 | Msa0830180:CDS | 45.0% | |
| GGTTCCACCTTACAGGTTAT+AGG | - | chr5_4:3228859-3228878 | Msa0830180:CDS | 45.0% | |
| AGAGTAACAGATCAGCCACG+TGG | + | chr5_4:3224913-3224932 | None:intergenic | 50.0% | |
| GGCTGCTGCTACTATTTGAG+TGG | + | chr5_4:3226218-3226237 | None:intergenic | 50.0% | |
| TTGGAAGTCATGGCTGCTCA+TGG | - | chr5_4:3226543-3226562 | Msa0830180:intron | 50.0% | |
| CTTCGGCCAACCATATACAG+TGG | + | chr5_4:3226696-3226715 | None:intergenic | 50.0% | |
| ! | CACTGTATATGGTTGGCCGA+AGG | - | chr5_4:3226694-3226713 | Msa0830180:intron | 50.0% |
| ! | TGTATATGGTTGGCCGAAGG+AGG | - | chr5_4:3226697-3226716 | Msa0830180:intron | 50.0% |
| CCCTAGTGGTTATATTGGGG+AGG | - | chr5_4:3227133-3227152 | Msa0830180:intron | 50.0% | |
| ATATTGGGGAGGATCCTCAC+GGG | - | chr5_4:3227144-3227163 | Msa0830180:intron | 50.0% | |
| !! | CGTCCTGCACTGACAGTTTT+TGG | - | chr5_4:3227215-3227234 | Msa0830180:CDS | 50.0% |
| !! | ACTGTCTGTCCTGGTTCTGT+TGG | - | chr5_4:3227371-3227390 | Msa0830180:intron | 50.0% |
| !! | CTGTCTGTCCTGGTTCTGTT+GGG | - | chr5_4:3227372-3227391 | Msa0830180:intron | 50.0% |
| TACATGCACCCAACAGAACC+AGG | + | chr5_4:3227383-3227402 | None:intergenic | 50.0% | |
| ! | AGAGCTTTTGAGCAGGCATC+TGG | - | chr5_4:3227765-3227784 | Msa0830180:intron | 50.0% |
| TTTCAGCATCACCAGGCCTA+CGG | + | chr5_4:3228281-3228300 | None:intergenic | 50.0% | |
| CAGGAGATCCATAGCCGTAA+GGG | + | chr5_4:3228605-3228624 | None:intergenic | 50.0% | |
| TCAGGAGATCCATAGCCGTA+AGG | + | chr5_4:3228606-3228625 | None:intergenic | 50.0% | |
| GCTTCAATGGCTTCTCGCGT+CGG | - | chr5_4:3225087-3225106 | Msa0830180:three_prime_UTR | 55.0% | |
| ! | TCTCGCGTCGGCATCACTAA+TGG | - | chr5_4:3225099-3225118 | Msa0830180:three_prime_UTR | 55.0% |
| GGTGTGGCTACCGATGTAAC+CGG | + | chr5_4:3225259-3225278 | None:intergenic | 55.0% | |
| GGCTGCTCATGGATGCAAGA+AGG | - | chr5_4:3226554-3226573 | Msa0830180:intron | 55.0% | |
| CATGCTGTGTGTGTCTGGAC+AGG | - | chr5_4:3227687-3227706 | Msa0830180:intron | 55.0% | |
| GGCACCGCCGGTAACTAGAA+CGG | + | chr5_4:3225238-3225257 | None:intergenic | 60.0% | |
| ! | GTTCTAGTTACCGGCGGTGC+CGG | - | chr5_4:3225237-3225256 | Msa0830180:three_prime_UTR | 60.0% |
| GGCCACTGCAGGTAGACATC+CGG | - | chr5_4:3226070-3226089 | Msa0830180:intron | 60.0% | |
| GCCACTGCAGGTAGACATCC+GGG | - | chr5_4:3226071-3226090 | Msa0830180:intron | 60.0% | |
| TCCCGGATGTCTACCTGCAG+TGG | + | chr5_4:3226075-3226094 | None:intergenic | 60.0% | |
| TGCAGGTAGACATCCGGGAC+AGG | - | chr5_4:3226076-3226095 | Msa0830180:intron | 60.0% | |
| GCAGGTAGACATCCGGGACA+GGG | - | chr5_4:3226077-3226096 | Msa0830180:intron | 60.0% | |
| CACTAGGGTGTGCACCCACT+GGG | + | chr5_4:3227121-3227140 | None:intergenic | 60.0% | |
| CTACGGCCAGCCTTCACAAG+TGG | + | chr5_4:3228264-3228283 | None:intergenic | 60.0% | |
| ! | CACTTGTGAAGGCTGGCCGT+AGG | - | chr5_4:3228262-3228281 | Msa0830180:intron | 60.0% |
| !! | ACCGGCGGTGCCGGTTACAT+CGG | - | chr5_4:3225246-3225265 | Msa0830180:three_prime_UTR | 65.0% |
| ACCGATGTAACCGGCACCGC+CGG | + | chr5_4:3225250-3225269 | None:intergenic | 65.0% | |
| GCTCAAGTGCAGCCCTGTCC+CGG | + | chr5_4:3226092-3226111 | None:intergenic | 65.0% | |
| CCACTAGGGTGTGCACCCAC+TGG | + | chr5_4:3227122-3227141 | None:intergenic | 65.0% | |
| CCAGTGGGTGCACACCCTAG+TGG | - | chr5_4:3227119-3227138 | Msa0830180:intron | 65.0% | |
| ! | GTGAAGGCTGGCCGTAGGCC+TGG | - | chr5_4:3228267-3228286 | Msa0830180:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 3224903 | 3229070 | 3224903 | ID=Msa0830180;Name=Msa0830180 |
| chr5_4 | mRNA | 3224903 | 3229070 | 3224903 | ID=Msa0830180-mRNA-1;Parent=Msa0830180;Name=Msa0830180-mRNA-1;_AED=0.31;_eAED=0.31;_QI=190|1|1|1|1|1|9|432|392 |
| chr5_4 | exon | 3224903 | 3225428 | 3224903 | ID=Msa0830180-mRNA-1:exon:1199;Parent=Msa0830180-mRNA-1 |
| chr5_4 | exon | 3225627 | 3225718 | 3225627 | ID=Msa0830180-mRNA-1:exon:1198;Parent=Msa0830180-mRNA-1 |
| chr5_4 | exon | 3226182 | 3226264 | 3226182 | ID=Msa0830180-mRNA-1:exon:1197;Parent=Msa0830180-mRNA-1 |
| chr5_4 | exon | 3226415 | 3226493 | 3226415 | ID=Msa0830180-mRNA-1:exon:1196;Parent=Msa0830180-mRNA-1 |
| chr5_4 | exon | 3226705 | 3226932 | 3226705 | ID=Msa0830180-mRNA-1:exon:1195;Parent=Msa0830180-mRNA-1 |
| chr5_4 | exon | 3227198 | 3227299 | 3227198 | ID=Msa0830180-mRNA-1:exon:1194;Parent=Msa0830180-mRNA-1 |
| chr5_4 | exon | 3227398 | 3227533 | 3227398 | ID=Msa0830180-mRNA-1:exon:1193;Parent=Msa0830180-mRNA-1 |
| chr5_4 | exon | 3227843 | 3227892 | 3227843 | ID=Msa0830180-mRNA-1:exon:1192;Parent=Msa0830180-mRNA-1 |
| chr5_4 | exon | 3228566 | 3229070 | 3228566 | ID=Msa0830180-mRNA-1:exon:1191;Parent=Msa0830180-mRNA-1 |
| chr5_4 | five_prime_UTR | 3228881 | 3229070 | 3228881 | ID=Msa0830180-mRNA-1:five_prime_utr;Parent=Msa0830180-mRNA-1 |
| chr5_4 | CDS | 3228566 | 3228880 | 3228566 | ID=Msa0830180-mRNA-1:cds;Parent=Msa0830180-mRNA-1 |
| chr5_4 | CDS | 3227843 | 3227892 | 3227843 | ID=Msa0830180-mRNA-1:cds;Parent=Msa0830180-mRNA-1 |
| chr5_4 | CDS | 3227398 | 3227533 | 3227398 | ID=Msa0830180-mRNA-1:cds;Parent=Msa0830180-mRNA-1 |
| chr5_4 | CDS | 3227198 | 3227299 | 3227198 | ID=Msa0830180-mRNA-1:cds;Parent=Msa0830180-mRNA-1 |
| chr5_4 | CDS | 3226705 | 3226932 | 3226705 | ID=Msa0830180-mRNA-1:cds;Parent=Msa0830180-mRNA-1 |
| chr5_4 | CDS | 3226415 | 3226493 | 3226415 | ID=Msa0830180-mRNA-1:cds;Parent=Msa0830180-mRNA-1 |
| chr5_4 | CDS | 3226182 | 3226264 | 3226182 | ID=Msa0830180-mRNA-1:cds;Parent=Msa0830180-mRNA-1 |
| chr5_4 | CDS | 3225627 | 3225718 | 3225627 | ID=Msa0830180-mRNA-1:cds;Parent=Msa0830180-mRNA-1 |
| chr5_4 | CDS | 3225335 | 3225428 | 3225335 | ID=Msa0830180-mRNA-1:cds;Parent=Msa0830180-mRNA-1 |
| chr5_4 | three_prime_UTR | 3224903 | 3225334 | 3224903 | ID=Msa0830180-mRNA-1:three_prime_utr;Parent=Msa0830180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
