Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752660 | XP_003611009.1 | 91.566 | 83 | 7 | 0 | 5 | 87 | 9 | 91 | 1.69e-47 | 156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752660 | sp|Q84RD1|ETC2_ARATH | 63.415 | 82 | 24 | 1 | 6 | 87 | 17 | 92 | 1.13e-28 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752660 | G7KAM1 | 91.566 | 83 | 7 | 0 | 5 | 87 | 9 | 91 | 8.07e-48 | 156 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0752660 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0712350 | Msa0752660 | 0.895904 | 6.150199e-76 | -8.615850e-47 |
| Msa0752660 | Msa0831030 | 0.910858 | 1.169869e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752660 | MtrunA17_Chr5g0396771 | 91.566 | 83 | 7 | 0 | 5 | 87 | 9 | 91 | 1.55e-51 | 156 |
| Msa0752660 | MtrunA17_Chr4g0024181 | 45.833 | 72 | 39 | 0 | 9 | 80 | 2 | 73 | 9.40e-19 | 73.2 |
| Msa0752660 | MtrunA17_Chr2g0322831 | 54.839 | 62 | 24 | 1 | 17 | 78 | 20 | 77 | 1.93e-18 | 72.4 |
| Msa0752660 | MtrunA17_Chr2g0288361 | 40.789 | 76 | 42 | 1 | 5 | 80 | 2 | 74 | 1.42e-15 | 65.1 |
| Msa0752660 | MtrunA17_Chr4g0055981 | 56.410 | 39 | 17 | 0 | 35 | 73 | 113 | 151 | 2.76e-11 | 57.0 |
| Msa0752660 | MtrunA17_Chr8g0360111 | 56.410 | 39 | 17 | 0 | 35 | 73 | 83 | 121 | 2.85e-11 | 57.4 |
| Msa0752660 | MtrunA17_Chr4g0070641 | 55.000 | 40 | 18 | 0 | 34 | 73 | 69 | 108 | 5.53e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752660 | AT2G30420.1 | 63.415 | 82 | 24 | 1 | 6 | 87 | 17 | 92 | 1.15e-29 | 102 |
| Msa0752660 | AT5G53200.1 | 70.312 | 64 | 19 | 0 | 24 | 87 | 22 | 85 | 1.64e-29 | 101 |
| Msa0752660 | AT2G46410.1 | 60.811 | 74 | 29 | 0 | 13 | 86 | 16 | 89 | 1.89e-28 | 98.6 |
| Msa0752660 | AT2G30424.1 | 59.740 | 77 | 30 | 1 | 12 | 87 | 12 | 88 | 4.68e-27 | 95.1 |
| Msa0752660 | AT2G30432.1 | 65.152 | 66 | 23 | 0 | 19 | 84 | 19 | 84 | 9.89e-27 | 94.0 |
| Msa0752660 | AT4G01060.1 | 55.844 | 77 | 34 | 0 | 1 | 77 | 1 | 77 | 1.13e-25 | 90.9 |
| Msa0752660 | AT4G01060.2 | 63.492 | 63 | 23 | 0 | 15 | 77 | 12 | 74 | 5.11e-25 | 89.4 |
| Msa0752660 | AT1G01380.1 | 75.556 | 45 | 11 | 0 | 33 | 77 | 32 | 76 | 1.61e-20 | 78.2 |
| Msa0752660 | AT4G01060.3 | 69.565 | 46 | 14 | 0 | 32 | 77 | 30 | 75 | 1.37e-19 | 75.5 |
| Msa0752660 | AT5G52600.1 | 58.974 | 39 | 16 | 0 | 35 | 73 | 70 | 108 | 9.59e-12 | 58.2 |
Find 24 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATCTTCACTTCTTTCTTT+TGG | 0.236926 | 5_2:+6401967 | None:intergenic |
| CGGAGGTTTGACTTGTGTTT+CGG | 0.239671 | 5_2:+6402921 | None:intergenic |
| CAGAAGAAATAGAGAGATTC+TGG | 0.240435 | 5_2:-6402018 | Msa0752660:CDS |
| GGAGGTTTGACTTGTGTTTC+GGG | 0.242590 | 5_2:+6402922 | None:intergenic |
| GGGAGATATTTGCCTTAGTT+TGG | 0.291933 | 5_2:+6402942 | None:intergenic |
| ACCACCAGGTAGATAAAATA+TGG | 0.317616 | 5_2:-6402975 | None:intergenic |
| TTGATAGCAGGTCGCATTCC+GGG | 0.323951 | 5_2:-6402049 | Msa0752660:CDS |
| GGAGATATTTGCCTTAGTTT+GGG | 0.373654 | 5_2:+6402943 | None:intergenic |
| TTTGATAGCAGGTCGCATTC+CGG | 0.383477 | 5_2:-6402050 | Msa0752660:CDS |
| CAATTATATCTCTCTCTCCT+AGG | 0.480221 | 5_2:-6401910 | Msa0752660:three_prime_UTR |
| GGAAGAACGTTCCCAAACTA+AGG | 0.483455 | 5_2:-6402954 | Msa0752660:CDS |
| TGTACGACCTAGTTGGAGAT+AGG | 0.497484 | 5_2:-6402622 | Msa0752660:intron |
| CAGAAGTGAGCAGCAATGAG+TGG | 0.497509 | 5_2:-6402691 | Msa0752660:CDS |
| CGCAGGATGTACGACCTAGT+TGG | 0.536525 | 5_2:-6402629 | Msa0752660:CDS |
| AACAGGTGGAATTTGATAGC+AGG | 0.543963 | 5_2:-6402061 | Msa0752660:intron |
| ATTTCTTCTGCTTTACGACC+CGG | 0.559635 | 5_2:+6402031 | None:intergenic |
| AAGATAAAGCAAATTAAACT+AGG | 0.566688 | 5_2:-6401951 | Msa0752660:three_prime_UTR |
| CATAGAGATGAGCGAGCAAG+AGG | 0.568119 | 5_2:-6402663 | Msa0752660:CDS |
| AAGAGGAGGATCTCATTCGC+AGG | 0.581290 | 5_2:-6402646 | Msa0752660:CDS |
| AGAAGTGAGCAGCAATGAGT+GGG | 0.602111 | 5_2:-6402690 | Msa0752660:CDS |
| AGAGATGAGCGAGCAAGAGG+AGG | 0.612798 | 5_2:-6402660 | Msa0752660:CDS |
| AGATTAGAAACCACCTTCGG+AGG | 0.612968 | 5_2:+6402904 | None:intergenic |
| AATATTACCTATCTCCAACT+AGG | 0.621481 | 5_2:+6402615 | None:intergenic |
| AACACAAGTCAAACCTCCGA+AGG | 0.653483 | 5_2:-6402917 | Msa0752660:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGCAATAGAGAAAATAA+TGG | + | chr5_2:6402035-6402054 | None:intergenic | 20.0% |
| !! | AAACATTAAATACTAGTATG+AGG | + | chr5_2:6402142-6402161 | None:intergenic | 20.0% |
| !!! | TATCTTTTGCAAAATCATAA+TGG | + | chr5_2:6402434-6402453 | None:intergenic | 20.0% |
| !!! | TCTAATTAGTTCTAATAACT+TGG | + | chr5_2:6402552-6402571 | None:intergenic | 20.0% |
| !! | ATTAGAACTAATTAGAAACA+CGG | - | chr5_2:6402556-6402575 | Msa0752660:intron | 20.0% |
| !!! | AAAGTTGGTCAATATTTTAA+AGG | + | chr5_2:6402681-6402700 | None:intergenic | 20.0% |
| !! | AAGATAAAGCAAATTAAACT+AGG | - | chr5_2:6402927-6402946 | Msa0752660:CDS | 20.0% |
| !! | AAAAGCAATAGAGAAAATAA+TGG | + | chr5_2:6402035-6402054 | None:intergenic | 20.0% |
| !! | AAACATTAAATACTAGTATG+AGG | + | chr5_2:6402142-6402161 | None:intergenic | 20.0% |
| !!! | TATCTTTTGCAAAATCATAA+TGG | + | chr5_2:6402434-6402453 | None:intergenic | 20.0% |
| !!! | TCTAATTAGTTCTAATAACT+TGG | + | chr5_2:6402552-6402571 | None:intergenic | 20.0% |
| !! | ATTAGAACTAATTAGAAACA+CGG | - | chr5_2:6402556-6402575 | Msa0752660:intron | 20.0% |
| !!! | AAAGTTGGTCAATATTTTAA+AGG | + | chr5_2:6402681-6402700 | None:intergenic | 20.0% |
| !! | AAGATAAAGCAAATTAAACT+AGG | - | chr5_2:6402927-6402946 | Msa0752660:CDS | 20.0% |
| !!! | TTTTAAGCTTTGACGTTTTA+AGG | - | chr5_2:6402328-6402347 | Msa0752660:intron | 25.0% |
| ! | TATGATACTAATTGCATGTT+TGG | + | chr5_2:6402519-6402538 | None:intergenic | 25.0% |
| ! | TTACTAAAGATGTGTTTGAT+AGG | - | chr5_2:6402613-6402632 | Msa0752660:intron | 25.0% |
| !! | TTTTTATGCTGTATGATGTT+TGG | - | chr5_2:6402698-6402717 | Msa0752660:CDS | 25.0% |
| !! | TTATCTTCACTTCTTTCTTT+TGG | + | chr5_2:6402914-6402933 | None:intergenic | 25.0% |
| !!! | TTTTAAGCTTTGACGTTTTA+AGG | - | chr5_2:6402328-6402347 | Msa0752660:intron | 25.0% |
| ! | TATGATACTAATTGCATGTT+TGG | + | chr5_2:6402519-6402538 | None:intergenic | 25.0% |
| ! | TTACTAAAGATGTGTTTGAT+AGG | - | chr5_2:6402613-6402632 | Msa0752660:intron | 25.0% |
| !! | TTTTTATGCTGTATGATGTT+TGG | - | chr5_2:6402698-6402717 | Msa0752660:CDS | 25.0% |
| !! | TTATCTTCACTTCTTTCTTT+TGG | + | chr5_2:6402914-6402933 | None:intergenic | 25.0% |
| AGAGAAAATAATGGCATGTT+GGG | + | chr5_2:6402026-6402045 | None:intergenic | 30.0% | |
| TAGAGAAAATAATGGCATGT+TGG | + | chr5_2:6402027-6402046 | None:intergenic | 30.0% | |
| TTATACGTGTACCAATTAAG+AGG | - | chr5_2:6402084-6402103 | Msa0752660:intron | 30.0% | |
| AATATTACCTATCTCCAACT+AGG | + | chr5_2:6402266-6402285 | None:intergenic | 30.0% | |
| ! | TATATTCCTTTGACGTTTTG+AGG | - | chr5_2:6402294-6402313 | Msa0752660:intron | 30.0% |
| AAAAAACCTCAAAACGTCAA+AGG | + | chr5_2:6402303-6402322 | None:intergenic | 30.0% | |
| TACAATTACAAAGAAGCTGA+GGG | - | chr5_2:6402384-6402403 | Msa0752660:intron | 30.0% | |
| ! | TAATTGCATGTTTGGTAACA+TGG | + | chr5_2:6402511-6402530 | None:intergenic | 30.0% |
| ! | GTTCTAATAACTTGGTCTTT+CGG | + | chr5_2:6402544-6402563 | None:intergenic | 30.0% |
| TAATTAGAAACACGGTGAAA+AGG | - | chr5_2:6402564-6402583 | Msa0752660:intron | 30.0% | |
| CATCATACAGCATAAAAAGT+TGG | + | chr5_2:6402696-6402715 | None:intergenic | 30.0% | |
| ! | GTCATAAGCTTTTACATGAA+AGG | - | chr5_2:6402765-6402784 | Msa0752660:intron | 30.0% |
| AATTATATCTCTCTCTCCTA+GGG | - | chr5_2:6402969-6402988 | Msa0752660:exon | 30.0% | |
| AGAGAAAATAATGGCATGTT+GGG | + | chr5_2:6402026-6402045 | None:intergenic | 30.0% | |
| TAGAGAAAATAATGGCATGT+TGG | + | chr5_2:6402027-6402046 | None:intergenic | 30.0% | |
| TTATACGTGTACCAATTAAG+AGG | - | chr5_2:6402084-6402103 | Msa0752660:intron | 30.0% | |
| AATATTACCTATCTCCAACT+AGG | + | chr5_2:6402266-6402285 | None:intergenic | 30.0% | |
| ! | TATATTCCTTTGACGTTTTG+AGG | - | chr5_2:6402294-6402313 | Msa0752660:intron | 30.0% |
| AAAAAACCTCAAAACGTCAA+AGG | + | chr5_2:6402303-6402322 | None:intergenic | 30.0% | |
| TACAATTACAAAGAAGCTGA+GGG | - | chr5_2:6402384-6402403 | Msa0752660:intron | 30.0% | |
| ! | TAATTGCATGTTTGGTAACA+TGG | + | chr5_2:6402511-6402530 | None:intergenic | 30.0% |
| ! | GTTCTAATAACTTGGTCTTT+CGG | + | chr5_2:6402544-6402563 | None:intergenic | 30.0% |
| TAATTAGAAACACGGTGAAA+AGG | - | chr5_2:6402564-6402583 | Msa0752660:intron | 30.0% | |
| CATCATACAGCATAAAAAGT+TGG | + | chr5_2:6402696-6402715 | None:intergenic | 30.0% | |
| ! | GTCATAAGCTTTTACATGAA+AGG | - | chr5_2:6402765-6402784 | Msa0752660:intron | 30.0% |
| GGAGATATTTGCCTTAGTTT+GGG | + | chr5_2:6401938-6401957 | None:intergenic | 35.0% | |
| AGAAAATAATGGCATGTTGG+GGG | + | chr5_2:6402024-6402043 | None:intergenic | 35.0% | |
| GAGAAAATAATGGCATGTTG+GGG | + | chr5_2:6402025-6402044 | None:intergenic | 35.0% | |
| ATGCATCATGTCCTCTTAAT+TGG | + | chr5_2:6402098-6402117 | None:intergenic | 35.0% | |
| CTACAATTACAAAGAAGCTG+AGG | - | chr5_2:6402383-6402402 | Msa0752660:intron | 35.0% | |
| TTATGCTGTATGATGTTTGG+TGG | - | chr5_2:6402701-6402720 | Msa0752660:intron | 35.0% | |
| AAGAAACTACACAATGCAAC+AGG | - | chr5_2:6402800-6402819 | Msa0752660:intron | 35.0% | |
| CAGAAGAAATAGAGAGATTC+TGG | - | chr5_2:6402860-6402879 | Msa0752660:intron | 35.0% | |
| ! | TCTTCACTTCTTTCTTTTGG+CGG | + | chr5_2:6402911-6402930 | None:intergenic | 35.0% |
| CAATTATATCTCTCTCTCCT+AGG | - | chr5_2:6402968-6402987 | Msa0752660:exon | 35.0% | |
| ATTATATCTCTCTCTCCTAG+GGG | - | chr5_2:6402970-6402989 | Msa0752660:exon | 35.0% | |
| GGAGATATTTGCCTTAGTTT+GGG | + | chr5_2:6401938-6401957 | None:intergenic | 35.0% | |
| AGAAAATAATGGCATGTTGG+GGG | + | chr5_2:6402024-6402043 | None:intergenic | 35.0% | |
| GAGAAAATAATGGCATGTTG+GGG | + | chr5_2:6402025-6402044 | None:intergenic | 35.0% | |
| ATGCATCATGTCCTCTTAAT+TGG | + | chr5_2:6402098-6402117 | None:intergenic | 35.0% | |
| CTACAATTACAAAGAAGCTG+AGG | - | chr5_2:6402383-6402402 | Msa0752660:intron | 35.0% | |
| TTATGCTGTATGATGTTTGG+TGG | - | chr5_2:6402701-6402720 | Msa0752660:intron | 35.0% | |
| AAGAAACTACACAATGCAAC+AGG | - | chr5_2:6402800-6402819 | Msa0752660:intron | 35.0% | |
| CAGAAGAAATAGAGAGATTC+TGG | - | chr5_2:6402860-6402879 | Msa0752660:intron | 35.0% | |
| ! | TCTTCACTTCTTTCTTTTGG+CGG | + | chr5_2:6402911-6402930 | None:intergenic | 35.0% |
| GGGAGATATTTGCCTTAGTT+TGG | + | chr5_2:6401939-6401958 | None:intergenic | 40.0% | |
| GGTAGATTAGAAACCACCTT+CGG | + | chr5_2:6401980-6401999 | None:intergenic | 40.0% | |
| AAACTACACAATGCAACAGG+TGG | - | chr5_2:6402803-6402822 | Msa0752660:intron | 40.0% | |
| ! | AACAGGTGGAATTTGATAGC+AGG | - | chr5_2:6402817-6402836 | Msa0752660:intron | 40.0% |
| ATTTCTTCTGCTTTACGACC+CGG | + | chr5_2:6402850-6402869 | None:intergenic | 40.0% | |
| GGGAGATATTTGCCTTAGTT+TGG | + | chr5_2:6401939-6401958 | None:intergenic | 40.0% | |
| GGTAGATTAGAAACCACCTT+CGG | + | chr5_2:6401980-6401999 | None:intergenic | 40.0% | |
| AAACTACACAATGCAACAGG+TGG | - | chr5_2:6402803-6402822 | Msa0752660:intron | 40.0% | |
| ! | AACAGGTGGAATTTGATAGC+AGG | - | chr5_2:6402817-6402836 | Msa0752660:intron | 40.0% |
| ATTTCTTCTGCTTTACGACC+CGG | + | chr5_2:6402850-6402869 | None:intergenic | 40.0% | |
| GGAAGAACGTTCCCAAACTA+AGG | - | chr5_2:6401924-6401943 | Msa0752660:three_prime_UTR | 45.0% | |
| !! | GGAGGTTTGACTTGTGTTTC+GGG | + | chr5_2:6401959-6401978 | None:intergenic | 45.0% |
| !! | CGGAGGTTTGACTTGTGTTT+CGG | + | chr5_2:6401960-6401979 | None:intergenic | 45.0% |
| AACACAAGTCAAACCTCCGA+AGG | - | chr5_2:6401961-6401980 | Msa0752660:exon | 45.0% | |
| AGATTAGAAACCACCTTCGG+AGG | + | chr5_2:6401977-6401996 | None:intergenic | 45.0% | |
| AATAATGGCATGTTGGGGGT+GGG | + | chr5_2:6402020-6402039 | None:intergenic | 45.0% | |
| AAATAATGGCATGTTGGGGG+TGG | + | chr5_2:6402021-6402040 | None:intergenic | 45.0% | |
| AGAAGTGAGCAGCAATGAGT+GGG | - | chr5_2:6402188-6402207 | Msa0752660:intron | 45.0% | |
| TGTACGACCTAGTTGGAGAT+AGG | - | chr5_2:6402256-6402275 | Msa0752660:intron | 45.0% | |
| ! | TTTGATAGCAGGTCGCATTC+CGG | - | chr5_2:6402828-6402847 | Msa0752660:intron | 45.0% |
| GGAAGAACGTTCCCAAACTA+AGG | - | chr5_2:6401924-6401943 | Msa0752660:three_prime_UTR | 45.0% | |
| !! | GGAGGTTTGACTTGTGTTTC+GGG | + | chr5_2:6401959-6401978 | None:intergenic | 45.0% |
| !! | CGGAGGTTTGACTTGTGTTT+CGG | + | chr5_2:6401960-6401979 | None:intergenic | 45.0% |
| AACACAAGTCAAACCTCCGA+AGG | - | chr5_2:6401961-6401980 | Msa0752660:exon | 45.0% | |
| AGATTAGAAACCACCTTCGG+AGG | + | chr5_2:6401977-6401996 | None:intergenic | 45.0% | |
| AATAATGGCATGTTGGGGGT+GGG | + | chr5_2:6402020-6402039 | None:intergenic | 45.0% | |
| AAATAATGGCATGTTGGGGG+TGG | + | chr5_2:6402021-6402040 | None:intergenic | 45.0% | |
| AGAAGTGAGCAGCAATGAGT+GGG | - | chr5_2:6402188-6402207 | Msa0752660:intron | 45.0% | |
| TGTACGACCTAGTTGGAGAT+AGG | - | chr5_2:6402256-6402275 | Msa0752660:intron | 45.0% | |
| ! | TTTGATAGCAGGTCGCATTC+CGG | - | chr5_2:6402828-6402847 | Msa0752660:intron | 45.0% |
| ACAAGTCAAACCTCCGAAGG+TGG | - | chr5_2:6401964-6401983 | Msa0752660:exon | 50.0% | |
| CAGAAGTGAGCAGCAATGAG+TGG | - | chr5_2:6402187-6402206 | Msa0752660:intron | 50.0% | |
| CATAGAGATGAGCGAGCAAG+AGG | - | chr5_2:6402215-6402234 | Msa0752660:intron | 50.0% | |
| AAGAGGAGGATCTCATTCGC+AGG | - | chr5_2:6402232-6402251 | Msa0752660:intron | 50.0% | |
| ! | TTGATAGCAGGTCGCATTCC+GGG | - | chr5_2:6402829-6402848 | Msa0752660:intron | 50.0% |
| ACAAGTCAAACCTCCGAAGG+TGG | - | chr5_2:6401964-6401983 | Msa0752660:exon | 50.0% | |
| CAGAAGTGAGCAGCAATGAG+TGG | - | chr5_2:6402187-6402206 | Msa0752660:intron | 50.0% | |
| CATAGAGATGAGCGAGCAAG+AGG | - | chr5_2:6402215-6402234 | Msa0752660:intron | 50.0% | |
| AAGAGGAGGATCTCATTCGC+AGG | - | chr5_2:6402232-6402251 | Msa0752660:intron | 50.0% | |
| ! | TTGATAGCAGGTCGCATTCC+GGG | - | chr5_2:6402829-6402848 | Msa0752660:intron | 50.0% |
| TGGGTGTGTGTGTGTGTTGG+GGG | + | chr5_2:6402001-6402020 | None:intergenic | 55.0% | |
| GTGGGTGTGTGTGTGTGTTG+GGG | + | chr5_2:6402002-6402021 | None:intergenic | 55.0% | |
| GGTGGGTGTGTGTGTGTGTT+GGG | + | chr5_2:6402003-6402022 | None:intergenic | 55.0% | |
| AGAGATGAGCGAGCAAGAGG+AGG | - | chr5_2:6402218-6402237 | Msa0752660:intron | 55.0% | |
| CGCAGGATGTACGACCTAGT+TGG | - | chr5_2:6402249-6402268 | Msa0752660:intron | 55.0% | |
| TGGGTGTGTGTGTGTGTTGG+GGG | + | chr5_2:6402001-6402020 | None:intergenic | 55.0% | |
| GTGGGTGTGTGTGTGTGTTG+GGG | + | chr5_2:6402002-6402021 | None:intergenic | 55.0% | |
| GGTGGGTGTGTGTGTGTGTT+GGG | + | chr5_2:6402003-6402022 | None:intergenic | 55.0% | |
| AGAGATGAGCGAGCAAGAGG+AGG | - | chr5_2:6402218-6402237 | Msa0752660:intron | 55.0% | |
| CGCAGGATGTACGACCTAGT+TGG | - | chr5_2:6402249-6402268 | Msa0752660:intron | 55.0% | |
| GGGTGGGTGTGTGTGTGTGT+TGG | + | chr5_2:6402004-6402023 | None:intergenic | 60.0% | |
| GGGTGGGTGTGTGTGTGTGT+TGG | + | chr5_2:6402004-6402023 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 6401910 | 6402990 | 6401910 | ID=Msa0752660;Name=Msa0752660 |
| chr5_2 | mRNA | 6401910 | 6402990 | 6401910 | ID=Msa0752660-mRNA-1;Parent=Msa0752660;Name=Msa0752660-mRNA-1;_AED=0.01;_eAED=0.01;_QI=12|0.5|0.66|1|0.5|0.33|3|63|87 |
| chr5_2 | exon | 6401910 | 6402078 | 6401910 | ID=Msa0752660-mRNA-1:exon:2724;Parent=Msa0752660-mRNA-1 |
| chr5_2 | exon | 6402623 | 6402719 | 6402623 | ID=Msa0752660-mRNA-1:exon:2723;Parent=Msa0752660-mRNA-1 |
| chr5_2 | exon | 6402918 | 6402990 | 6402918 | ID=Msa0752660-mRNA-1:exon:2722;Parent=Msa0752660-mRNA-1 |
| chr5_2 | five_prime_UTR | 6402979 | 6402990 | 6402979 | ID=Msa0752660-mRNA-1:five_prime_utr;Parent=Msa0752660-mRNA-1 |
| chr5_2 | CDS | 6402918 | 6402978 | 6402918 | ID=Msa0752660-mRNA-1:cds;Parent=Msa0752660-mRNA-1 |
| chr5_2 | CDS | 6402623 | 6402719 | 6402623 | ID=Msa0752660-mRNA-1:cds;Parent=Msa0752660-mRNA-1 |
| chr5_2 | CDS | 6401973 | 6402078 | 6401973 | ID=Msa0752660-mRNA-1:cds;Parent=Msa0752660-mRNA-1 |
| chr5_2 | three_prime_UTR | 6401910 | 6401972 | 6401910 | ID=Msa0752660-mRNA-1:three_prime_utr;Parent=Msa0752660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
