Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831030 | XP_003611009.1 | 91.566 | 83 | 7 | 0 | 5 | 87 | 9 | 91 | 1.69e-47 | 156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831030 | sp|Q84RD1|ETC2_ARATH | 63.415 | 82 | 24 | 1 | 6 | 87 | 17 | 92 | 1.13e-28 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831030 | G7KAM1 | 91.566 | 83 | 7 | 0 | 5 | 87 | 9 | 91 | 8.07e-48 | 156 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0831030 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0712350 | Msa0831030 | 0.954881 | 1.084175e-112 | -8.615850e-47 |
| Msa0752660 | Msa0831030 | 0.910858 | 1.169869e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831030 | MtrunA17_Chr5g0396771 | 91.566 | 83 | 7 | 0 | 5 | 87 | 9 | 91 | 1.55e-51 | 156 |
| Msa0831030 | MtrunA17_Chr4g0024181 | 45.833 | 72 | 39 | 0 | 9 | 80 | 2 | 73 | 9.40e-19 | 73.2 |
| Msa0831030 | MtrunA17_Chr2g0322831 | 54.839 | 62 | 24 | 1 | 17 | 78 | 20 | 77 | 1.93e-18 | 72.4 |
| Msa0831030 | MtrunA17_Chr2g0288361 | 40.789 | 76 | 42 | 1 | 5 | 80 | 2 | 74 | 1.42e-15 | 65.1 |
| Msa0831030 | MtrunA17_Chr4g0055981 | 56.410 | 39 | 17 | 0 | 35 | 73 | 113 | 151 | 2.76e-11 | 57.0 |
| Msa0831030 | MtrunA17_Chr8g0360111 | 56.410 | 39 | 17 | 0 | 35 | 73 | 83 | 121 | 2.85e-11 | 57.4 |
| Msa0831030 | MtrunA17_Chr4g0070641 | 55.000 | 40 | 18 | 0 | 34 | 73 | 69 | 108 | 5.53e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831030 | AT2G30420.1 | 63.415 | 82 | 24 | 1 | 6 | 87 | 17 | 92 | 1.15e-29 | 102 |
| Msa0831030 | AT5G53200.1 | 70.312 | 64 | 19 | 0 | 24 | 87 | 22 | 85 | 1.64e-29 | 101 |
| Msa0831030 | AT2G46410.1 | 60.811 | 74 | 29 | 0 | 13 | 86 | 16 | 89 | 1.89e-28 | 98.6 |
| Msa0831030 | AT2G30424.1 | 59.740 | 77 | 30 | 1 | 12 | 87 | 12 | 88 | 4.68e-27 | 95.1 |
| Msa0831030 | AT2G30432.1 | 65.152 | 66 | 23 | 0 | 19 | 84 | 19 | 84 | 9.89e-27 | 94.0 |
| Msa0831030 | AT4G01060.1 | 55.844 | 77 | 34 | 0 | 1 | 77 | 1 | 77 | 1.13e-25 | 90.9 |
| Msa0831030 | AT4G01060.2 | 63.492 | 63 | 23 | 0 | 15 | 77 | 12 | 74 | 5.11e-25 | 89.4 |
| Msa0831030 | AT1G01380.1 | 75.556 | 45 | 11 | 0 | 33 | 77 | 32 | 76 | 1.61e-20 | 78.2 |
| Msa0831030 | AT4G01060.3 | 69.565 | 46 | 14 | 0 | 32 | 77 | 30 | 75 | 1.37e-19 | 75.5 |
| Msa0831030 | AT5G52600.1 | 58.974 | 39 | 16 | 0 | 35 | 73 | 70 | 108 | 9.59e-12 | 58.2 |
Find 32 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATTTAGTACATAGTTTA+AGG | 0.125338 | 5_4:-4058580 | Msa0831030:three_prime_UTR |
| TTATCTTCACTTCTTTCTTT+TGG | 0.236926 | 5_4:+4058780 | None:intergenic |
| CGGAGGTTTGACTTGTGTTT+CGG | 0.239671 | 5_4:+4059725 | None:intergenic |
| CAGAAGAAATAGAGAGATTC+TGG | 0.240435 | 5_4:-4058831 | Msa0831030:CDS |
| GGAGGTTTGACTTGTGTTTC+GGG | 0.242590 | 5_4:+4059726 | None:intergenic |
| GGGAGATATTTGCCTTAGTT+TGG | 0.291933 | 5_4:+4059746 | None:intergenic |
| CTAGCATACAAACTTTGTTT+TGG | 0.300692 | 5_4:-4058686 | Msa0831030:three_prime_UTR |
| ACCACCAGGTAGATAAAATA+TGG | 0.317616 | 5_4:-4059779 | None:intergenic |
| TTGATAGCAGGTCGCATTCC+GGG | 0.323951 | 5_4:-4058862 | Msa0831030:CDS |
| TGTCTGAAGCAAGCTTTATA+TGG | 0.347994 | 5_4:-4058613 | Msa0831030:three_prime_UTR |
| TTTGTATTGCTTCTCGTTGA+AGG | 0.371662 | 5_4:-4058649 | Msa0831030:three_prime_UTR |
| GGAGATATTTGCCTTAGTTT+GGG | 0.373654 | 5_4:+4059747 | None:intergenic |
| TTTGATAGCAGGTCGCATTC+CGG | 0.383477 | 5_4:-4058863 | Msa0831030:CDS |
| CAATTATATCTCTCTCTCCT+AGG | 0.480221 | 5_4:-4058723 | Msa0831030:three_prime_UTR |
| GGAAGAACGTTCCCAAACTA+AGG | 0.483455 | 5_4:-4059758 | Msa0831030:CDS |
| TGTACGACCTAGTTGGAGAT+AGG | 0.497484 | 5_4:-4059425 | Msa0831030:intron |
| CAGAAGTGAGCAGCAATGAG+TGG | 0.497509 | 5_4:-4059494 | Msa0831030:CDS |
| AAAATCAAGTGTAGGACAAA+CGG | 0.520186 | 5_4:+4058539 | None:intergenic |
| CGCAGGATGTACGACCTAGT+TGG | 0.536525 | 5_4:-4059432 | Msa0831030:CDS |
| AACAGGTGGAATTTGATAGC+AGG | 0.539200 | 5_4:-4058874 | Msa0831030:intron |
| ATTTCTTCTGCTTTACGACC+CGG | 0.559635 | 5_4:+4058844 | None:intergenic |
| TAGAATAATCAATCATGCCT+AGG | 0.562767 | 5_4:+4058706 | None:intergenic |
| AAGATAAAGCAAATTAAACT+AGG | 0.566688 | 5_4:-4058764 | Msa0831030:three_prime_UTR |
| CATAGAGATGAGCGAGCAAG+AGG | 0.568119 | 5_4:-4059466 | Msa0831030:CDS |
| AAGAGGAGGATCTCATTCGC+AGG | 0.581290 | 5_4:-4059449 | Msa0831030:CDS |
| TATAAAGCTTGCTTCAGACA+TGG | 0.595768 | 5_4:+4058616 | None:intergenic |
| AGAAGTGAGCAGCAATGAGT+GGG | 0.602111 | 5_4:-4059493 | Msa0831030:CDS |
| AGAGATGAGCGAGCAAGAGG+AGG | 0.612798 | 5_4:-4059463 | Msa0831030:CDS |
| AGATTAGAAACCACCTTCGG+AGG | 0.612968 | 5_4:+4059708 | None:intergenic |
| AACAAAAGAAAATCAAGTGT+AGG | 0.621115 | 5_4:+4058531 | None:intergenic |
| AATATTACCTATCTCCAACT+AGG | 0.621481 | 5_4:+4059418 | None:intergenic |
| AACACAAGTCAAACCTCCGA+AGG | 0.653483 | 5_4:-4059721 | Msa0831030:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGCAATAGAGAAAATAA+TGG | + | chr5_4:4058660-4058679 | None:intergenic | 20.0% |
| !! | AAACATTAAATACTAGTATG+AGG | + | chr5_4:4058768-4058787 | None:intergenic | 20.0% |
| !!! | TATCTTTTGCAAAATCATAA+TGG | + | chr5_4:4059055-4059074 | None:intergenic | 20.0% |
| !!! | TCTAATTAGTTCTAATAACT+TGG | + | chr5_4:4059173-4059192 | None:intergenic | 20.0% |
| !! | ATTAGAACTAATTAGAAACA+CGG | - | chr5_4:4059177-4059196 | Msa0831030:intron | 20.0% |
| !!! | CATATAAGCTTTTATATGAA+AGG | - | chr5_4:4059384-4059403 | Msa0831030:intron | 20.0% |
| !! | AAGATAAAGCAAATTAAACT+AGG | - | chr5_4:4059543-4059562 | Msa0831030:intron | 20.0% |
| !! | TGTATTTAGTACATAGTTTA+AGG | - | chr5_4:4059727-4059746 | Msa0831030:CDS | 20.0% |
| !! | AAAAGCAATAGAGAAAATAA+TGG | + | chr5_4:4058660-4058679 | None:intergenic | 20.0% |
| !! | AAACATTAAATACTAGTATG+AGG | + | chr5_4:4058768-4058787 | None:intergenic | 20.0% |
| !!! | TATCTTTTGCAAAATCATAA+TGG | + | chr5_4:4059055-4059074 | None:intergenic | 20.0% |
| !!! | TCTAATTAGTTCTAATAACT+TGG | + | chr5_4:4059173-4059192 | None:intergenic | 20.0% |
| !! | ATTAGAACTAATTAGAAACA+CGG | - | chr5_4:4059177-4059196 | Msa0831030:intron | 20.0% |
| !!! | CATATAAGCTTTTATATGAA+AGG | - | chr5_4:4059384-4059403 | Msa0831030:intron | 20.0% |
| !! | AAGATAAAGCAAATTAAACT+AGG | - | chr5_4:4059543-4059562 | Msa0831030:intron | 20.0% |
| !! | TGTATTTAGTACATAGTTTA+AGG | - | chr5_4:4059727-4059746 | Msa0831030:CDS | 20.0% |
| !! | TCTCTTTTATTACTTATACG+TGG | - | chr5_4:4058696-4058715 | Msa0831030:three_prime_UTR | 25.0% |
| !!! | TTTTAAGCTTTGACGTTTTA+AGG | - | chr5_4:4058949-4058968 | Msa0831030:intron | 25.0% |
| ! | TTACTAAAGATGTGTTTGAT+AGG | - | chr5_4:4059234-4059253 | Msa0831030:intron | 25.0% |
| !! | TTTTTATGTTGTATGGTGTT+TGG | - | chr5_4:4059315-4059334 | Msa0831030:intron | 25.0% |
| !! | TTATCTTCACTTCTTTCTTT+TGG | + | chr5_4:4059530-4059549 | None:intergenic | 25.0% |
| !! | TCTCTTTTATTACTTATACG+TGG | - | chr5_4:4058696-4058715 | Msa0831030:three_prime_UTR | 25.0% |
| !!! | TTTTAAGCTTTGACGTTTTA+AGG | - | chr5_4:4058949-4058968 | Msa0831030:intron | 25.0% |
| ! | TTACTAAAGATGTGTTTGAT+AGG | - | chr5_4:4059234-4059253 | Msa0831030:intron | 25.0% |
| !! | TTTTTATGTTGTATGGTGTT+TGG | - | chr5_4:4059315-4059334 | Msa0831030:intron | 25.0% |
| !! | TTATCTTCACTTCTTTCTTT+TGG | + | chr5_4:4059530-4059549 | None:intergenic | 25.0% |
| AGAGAAAATAATGGCATGTT+GGG | + | chr5_4:4058651-4058670 | None:intergenic | 30.0% | |
| TAGAGAAAATAATGGCATGT+TGG | + | chr5_4:4058652-4058671 | None:intergenic | 30.0% | |
| AATATTACCTATCTCCAACT+AGG | + | chr5_4:4058892-4058911 | None:intergenic | 30.0% | |
| ! | TATATTCCTTTGACGTTTTG+AGG | - | chr5_4:4058920-4058939 | Msa0831030:intron | 30.0% |
| AAAAAACCTCAAAACGTCAA+AGG | + | chr5_4:4058929-4058948 | None:intergenic | 30.0% | |
| TACAATTACAAAGAAGCTGA+GGG | - | chr5_4:4059005-4059024 | Msa0831030:intron | 30.0% | |
| TGCAAAATCATAATGGTTCA+CGG | + | chr5_4:4059048-4059067 | None:intergenic | 30.0% | |
| ! | TAATTGCATGTTTGGTAACA+TGG | + | chr5_4:4059132-4059151 | None:intergenic | 30.0% |
| TACGATACTAATTGCATGTT+TGG | + | chr5_4:4059140-4059159 | None:intergenic | 30.0% | |
| ! | GTTCTAATAACTTGGTCTTT+CGG | + | chr5_4:4059165-4059184 | None:intergenic | 30.0% |
| TAATTAGAAACACGGTGAAA+AGG | - | chr5_4:4059185-4059204 | Msa0831030:intron | 30.0% | |
| ! | GACCAACTTTTTATGTTGTA+TGG | - | chr5_4:4059308-4059327 | Msa0831030:intron | 30.0% |
| CACCATACAACATAAAAAGT+TGG | + | chr5_4:4059313-4059332 | None:intergenic | 30.0% | |
| TAGAATAATCAATCATGCCT+AGG | + | chr5_4:4059604-4059623 | None:intergenic | 30.0% | |
| !! | CTAGCATACAAACTTTGTTT+TGG | - | chr5_4:4059621-4059640 | Msa0831030:intron | 30.0% |
| AAAATCAAGTGTAGGACAAA+CGG | + | chr5_4:4059771-4059790 | None:intergenic | 30.0% | |
| AGAGAAAATAATGGCATGTT+GGG | + | chr5_4:4058651-4058670 | None:intergenic | 30.0% | |
| TAGAGAAAATAATGGCATGT+TGG | + | chr5_4:4058652-4058671 | None:intergenic | 30.0% | |
| AATATTACCTATCTCCAACT+AGG | + | chr5_4:4058892-4058911 | None:intergenic | 30.0% | |
| ! | TATATTCCTTTGACGTTTTG+AGG | - | chr5_4:4058920-4058939 | Msa0831030:intron | 30.0% |
| AAAAAACCTCAAAACGTCAA+AGG | + | chr5_4:4058929-4058948 | None:intergenic | 30.0% | |
| TACAATTACAAAGAAGCTGA+GGG | - | chr5_4:4059005-4059024 | Msa0831030:intron | 30.0% | |
| TGCAAAATCATAATGGTTCA+CGG | + | chr5_4:4059048-4059067 | None:intergenic | 30.0% | |
| ! | TAATTGCATGTTTGGTAACA+TGG | + | chr5_4:4059132-4059151 | None:intergenic | 30.0% |
| TACGATACTAATTGCATGTT+TGG | + | chr5_4:4059140-4059159 | None:intergenic | 30.0% | |
| ! | GTTCTAATAACTTGGTCTTT+CGG | + | chr5_4:4059165-4059184 | None:intergenic | 30.0% |
| TAATTAGAAACACGGTGAAA+AGG | - | chr5_4:4059185-4059204 | Msa0831030:intron | 30.0% | |
| ! | GACCAACTTTTTATGTTGTA+TGG | - | chr5_4:4059308-4059327 | Msa0831030:intron | 30.0% |
| CACCATACAACATAAAAAGT+TGG | + | chr5_4:4059313-4059332 | None:intergenic | 30.0% | |
| TAGAATAATCAATCATGCCT+AGG | + | chr5_4:4059604-4059623 | None:intergenic | 30.0% | |
| !! | CTAGCATACAAACTTTGTTT+TGG | - | chr5_4:4059621-4059640 | Msa0831030:intron | 30.0% |
| AAAATCAAGTGTAGGACAAA+CGG | + | chr5_4:4059771-4059790 | None:intergenic | 30.0% | |
| GGAGATATTTGCCTTAGTTT+GGG | + | chr5_4:4058563-4058582 | None:intergenic | 35.0% | |
| AGAAAATAATGGCATGTTGG+GGG | + | chr5_4:4058649-4058668 | None:intergenic | 35.0% | |
| GAGAAAATAATGGCATGTTG+GGG | + | chr5_4:4058650-4058669 | None:intergenic | 35.0% | |
| TATACGTGGTACCAATTAAG+AGG | - | chr5_4:4058710-4058729 | Msa0831030:three_prime_UTR | 35.0% | |
| ATGCATCATGTCCTCTTAAT+TGG | + | chr5_4:4058724-4058743 | None:intergenic | 35.0% | |
| CTACAATTACAAAGAAGCTG+AGG | - | chr5_4:4059004-4059023 | Msa0831030:intron | 35.0% | |
| TTATGTTGTATGGTGTTTGG+TGG | - | chr5_4:4059318-4059337 | Msa0831030:intron | 35.0% | |
| CAGAAGAAATAGAGAGATTC+TGG | - | chr5_4:4059476-4059495 | Msa0831030:CDS | 35.0% | |
| ! | TCTTCACTTCTTTCTTTTGG+CGG | + | chr5_4:4059527-4059546 | None:intergenic | 35.0% |
| CAATTATATCTCTCTCTCCT+AGG | - | chr5_4:4059584-4059603 | Msa0831030:intron | 35.0% | |
| TTTGTATTGCTTCTCGTTGA+AGG | - | chr5_4:4059658-4059677 | Msa0831030:intron | 35.0% | |
| ! | TATAAAGCTTGCTTCAGACA+TGG | + | chr5_4:4059694-4059713 | None:intergenic | 35.0% |
| ! | TGTCTGAAGCAAGCTTTATA+TGG | - | chr5_4:4059694-4059713 | Msa0831030:intron | 35.0% |
| ! | GTCCTACACTTGATTTTCTT+TGG | - | chr5_4:4059774-4059793 | Msa0831030:exon | 35.0% |
| GGAGATATTTGCCTTAGTTT+GGG | + | chr5_4:4058563-4058582 | None:intergenic | 35.0% | |
| AGAAAATAATGGCATGTTGG+GGG | + | chr5_4:4058649-4058668 | None:intergenic | 35.0% | |
| GAGAAAATAATGGCATGTTG+GGG | + | chr5_4:4058650-4058669 | None:intergenic | 35.0% | |
| TATACGTGGTACCAATTAAG+AGG | - | chr5_4:4058710-4058729 | Msa0831030:three_prime_UTR | 35.0% | |
| ATGCATCATGTCCTCTTAAT+TGG | + | chr5_4:4058724-4058743 | None:intergenic | 35.0% | |
| CTACAATTACAAAGAAGCTG+AGG | - | chr5_4:4059004-4059023 | Msa0831030:intron | 35.0% | |
| TTATGTTGTATGGTGTTTGG+TGG | - | chr5_4:4059318-4059337 | Msa0831030:intron | 35.0% | |
| CAGAAGAAATAGAGAGATTC+TGG | - | chr5_4:4059476-4059495 | Msa0831030:CDS | 35.0% | |
| ! | TCTTCACTTCTTTCTTTTGG+CGG | + | chr5_4:4059527-4059546 | None:intergenic | 35.0% |
| CAATTATATCTCTCTCTCCT+AGG | - | chr5_4:4059584-4059603 | Msa0831030:intron | 35.0% | |
| TTTGTATTGCTTCTCGTTGA+AGG | - | chr5_4:4059658-4059677 | Msa0831030:intron | 35.0% | |
| ! | TATAAAGCTTGCTTCAGACA+TGG | + | chr5_4:4059694-4059713 | None:intergenic | 35.0% |
| ! | TGTCTGAAGCAAGCTTTATA+TGG | - | chr5_4:4059694-4059713 | Msa0831030:intron | 35.0% |
| GGGAGATATTTGCCTTAGTT+TGG | + | chr5_4:4058564-4058583 | None:intergenic | 40.0% | |
| GGTAGATTAGAAACCACCTT+CGG | + | chr5_4:4058605-4058624 | None:intergenic | 40.0% | |
| TAGAAACTACACAACGCAAC+AGG | - | chr5_4:4059416-4059435 | Msa0831030:intron | 40.0% | |
| ! | AACAGGTGGAATTTGATAGC+AGG | - | chr5_4:4059433-4059452 | Msa0831030:CDS | 40.0% |
| ATTTCTTCTGCTTTACGACC+CGG | + | chr5_4:4059466-4059485 | None:intergenic | 40.0% | |
| GGGAGATATTTGCCTTAGTT+TGG | + | chr5_4:4058564-4058583 | None:intergenic | 40.0% | |
| GGTAGATTAGAAACCACCTT+CGG | + | chr5_4:4058605-4058624 | None:intergenic | 40.0% | |
| TAGAAACTACACAACGCAAC+AGG | - | chr5_4:4059416-4059435 | Msa0831030:intron | 40.0% | |
| ! | AACAGGTGGAATTTGATAGC+AGG | - | chr5_4:4059433-4059452 | Msa0831030:CDS | 40.0% |
| ATTTCTTCTGCTTTACGACC+CGG | + | chr5_4:4059466-4059485 | None:intergenic | 40.0% | |
| GGAAGAACGTTCCCAAACTA+AGG | - | chr5_4:4058549-4058568 | Msa0831030:three_prime_UTR | 45.0% | |
| !! | GGAGGTTTGACTTGTGTTTC+GGG | + | chr5_4:4058584-4058603 | None:intergenic | 45.0% |
| !! | CGGAGGTTTGACTTGTGTTT+CGG | + | chr5_4:4058585-4058604 | None:intergenic | 45.0% |
| AACACAAGTCAAACCTCCGA+AGG | - | chr5_4:4058586-4058605 | Msa0831030:three_prime_UTR | 45.0% | |
| AGATTAGAAACCACCTTCGG+AGG | + | chr5_4:4058602-4058621 | None:intergenic | 45.0% | |
| AATAATGGCATGTTGGGGGT+GGG | + | chr5_4:4058645-4058664 | None:intergenic | 45.0% | |
| AAATAATGGCATGTTGGGGG+TGG | + | chr5_4:4058646-4058665 | None:intergenic | 45.0% | |
| AGAAGTGAGCAGCAATGAGT+GGG | - | chr5_4:4058814-4058833 | Msa0831030:CDS | 45.0% | |
| TGTACGACCTAGTTGGAGAT+AGG | - | chr5_4:4058882-4058901 | Msa0831030:intron | 45.0% | |
| AAACTACACAACGCAACAGG+TGG | - | chr5_4:4059419-4059438 | Msa0831030:intron | 45.0% | |
| ! | TTTGATAGCAGGTCGCATTC+CGG | - | chr5_4:4059444-4059463 | Msa0831030:CDS | 45.0% |
| GGAAGAACGTTCCCAAACTA+AGG | - | chr5_4:4058549-4058568 | Msa0831030:three_prime_UTR | 45.0% | |
| !! | GGAGGTTTGACTTGTGTTTC+GGG | + | chr5_4:4058584-4058603 | None:intergenic | 45.0% |
| !! | CGGAGGTTTGACTTGTGTTT+CGG | + | chr5_4:4058585-4058604 | None:intergenic | 45.0% |
| AACACAAGTCAAACCTCCGA+AGG | - | chr5_4:4058586-4058605 | Msa0831030:three_prime_UTR | 45.0% | |
| AGATTAGAAACCACCTTCGG+AGG | + | chr5_4:4058602-4058621 | None:intergenic | 45.0% | |
| AATAATGGCATGTTGGGGGT+GGG | + | chr5_4:4058645-4058664 | None:intergenic | 45.0% | |
| AAATAATGGCATGTTGGGGG+TGG | + | chr5_4:4058646-4058665 | None:intergenic | 45.0% | |
| AGAAGTGAGCAGCAATGAGT+GGG | - | chr5_4:4058814-4058833 | Msa0831030:CDS | 45.0% | |
| TGTACGACCTAGTTGGAGAT+AGG | - | chr5_4:4058882-4058901 | Msa0831030:intron | 45.0% | |
| AAACTACACAACGCAACAGG+TGG | - | chr5_4:4059419-4059438 | Msa0831030:intron | 45.0% | |
| ! | TTTGATAGCAGGTCGCATTC+CGG | - | chr5_4:4059444-4059463 | Msa0831030:CDS | 45.0% |
| ACAAGTCAAACCTCCGAAGG+TGG | - | chr5_4:4058589-4058608 | Msa0831030:three_prime_UTR | 50.0% | |
| CAGAAGTGAGCAGCAATGAG+TGG | - | chr5_4:4058813-4058832 | Msa0831030:CDS | 50.0% | |
| CATAGAGATGAGCGAGCAAG+AGG | - | chr5_4:4058841-4058860 | Msa0831030:CDS | 50.0% | |
| AAGAGGAGGATCTCATTCGC+AGG | - | chr5_4:4058858-4058877 | Msa0831030:CDS | 50.0% | |
| ! | TTGATAGCAGGTCGCATTCC+GGG | - | chr5_4:4059445-4059464 | Msa0831030:CDS | 50.0% |
| ACAAGTCAAACCTCCGAAGG+TGG | - | chr5_4:4058589-4058608 | Msa0831030:three_prime_UTR | 50.0% | |
| CAGAAGTGAGCAGCAATGAG+TGG | - | chr5_4:4058813-4058832 | Msa0831030:CDS | 50.0% | |
| CATAGAGATGAGCGAGCAAG+AGG | - | chr5_4:4058841-4058860 | Msa0831030:CDS | 50.0% | |
| AAGAGGAGGATCTCATTCGC+AGG | - | chr5_4:4058858-4058877 | Msa0831030:CDS | 50.0% | |
| ! | TTGATAGCAGGTCGCATTCC+GGG | - | chr5_4:4059445-4059464 | Msa0831030:CDS | 50.0% |
| AGAGATGAGCGAGCAAGAGG+AGG | - | chr5_4:4058844-4058863 | Msa0831030:CDS | 55.0% | |
| CGCAGGATGTACGACCTAGT+TGG | - | chr5_4:4058875-4058894 | Msa0831030:intron | 55.0% | |
| AGAGATGAGCGAGCAAGAGG+AGG | - | chr5_4:4058844-4058863 | Msa0831030:CDS | 55.0% | |
| CGCAGGATGTACGACCTAGT+TGG | - | chr5_4:4058875-4058894 | Msa0831030:intron | 55.0% | |
| TGGGTGGGTGTGTGTGTTGG+GGG | + | chr5_4:4058626-4058645 | None:intergenic | 60.0% | |
| GTGGGTGGGTGTGTGTGTTG+GGG | + | chr5_4:4058627-4058646 | None:intergenic | 60.0% | |
| GGTGGGTGGGTGTGTGTGTT+GGG | + | chr5_4:4058628-4058647 | None:intergenic | 60.0% | |
| ATGGCATGTTGGGGGTGGGT+GGG | + | chr5_4:4058641-4058660 | None:intergenic | 60.0% | |
| AATGGCATGTTGGGGGTGGG+TGG | + | chr5_4:4058642-4058661 | None:intergenic | 60.0% | |
| TGGGTGGGTGTGTGTGTTGG+GGG | + | chr5_4:4058626-4058645 | None:intergenic | 60.0% | |
| GTGGGTGGGTGTGTGTGTTG+GGG | + | chr5_4:4058627-4058646 | None:intergenic | 60.0% | |
| GGTGGGTGGGTGTGTGTGTT+GGG | + | chr5_4:4058628-4058647 | None:intergenic | 60.0% | |
| ATGGCATGTTGGGGGTGGGT+GGG | + | chr5_4:4058641-4058660 | None:intergenic | 60.0% | |
| AATGGCATGTTGGGGGTGGG+TGG | + | chr5_4:4058642-4058661 | None:intergenic | 60.0% | |
| GGGTGGGTGGGTGTGTGTGT+TGG | + | chr5_4:4058629-4058648 | None:intergenic | 65.0% | |
| GGGTGGGTGGGTGTGTGTGT+TGG | + | chr5_4:4058629-4058648 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 4058535 | 4059794 | 4058535 | ID=Msa0831030;Name=Msa0831030 |
| chr5_4 | mRNA | 4058535 | 4059794 | 4058535 | ID=Msa0831030-mRNA-1;Parent=Msa0831030;Name=Msa0831030-mRNA-1;_AED=0.01;_eAED=0.01;_QI=12|0.5|0.66|1|0.5|0.33|3|251|87 |
| chr5_4 | exon | 4058535 | 4058891 | 4058535 | ID=Msa0831030-mRNA-1:exon:1602;Parent=Msa0831030-mRNA-1 |
| chr5_4 | exon | 4059426 | 4059522 | 4059426 | ID=Msa0831030-mRNA-1:exon:1601;Parent=Msa0831030-mRNA-1 |
| chr5_4 | exon | 4059722 | 4059794 | 4059722 | ID=Msa0831030-mRNA-1:exon:1600;Parent=Msa0831030-mRNA-1 |
| chr5_4 | five_prime_UTR | 4059783 | 4059794 | 4059783 | ID=Msa0831030-mRNA-1:five_prime_utr;Parent=Msa0831030-mRNA-1 |
| chr5_4 | CDS | 4059722 | 4059782 | 4059722 | ID=Msa0831030-mRNA-1:cds;Parent=Msa0831030-mRNA-1 |
| chr5_4 | CDS | 4059426 | 4059522 | 4059426 | ID=Msa0831030-mRNA-1:cds;Parent=Msa0831030-mRNA-1 |
| chr5_4 | CDS | 4058786 | 4058891 | 4058786 | ID=Msa0831030-mRNA-1:cds;Parent=Msa0831030-mRNA-1 |
| chr5_4 | three_prime_UTR | 4058535 | 4058785 | 4058535 | ID=Msa0831030-mRNA-1:three_prime_utr;Parent=Msa0831030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
