Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712350 | XP_003611009.1 | 91.566 | 83 | 7 | 0 | 5 | 87 | 9 | 91 | 1.69e-47 | 156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712350 | sp|Q84RD1|ETC2_ARATH | 63.415 | 82 | 24 | 1 | 6 | 87 | 17 | 92 | 1.13e-28 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712350 | G7KAM1 | 91.566 | 83 | 7 | 0 | 5 | 87 | 9 | 91 | 8.07e-48 | 156 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0712350 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0712350 | Msa0752660 | 0.895904 | 6.150199e-76 | -8.615850e-47 |
| Msa0712350 | Msa0831030 | 0.954881 | 1.084175e-112 | -8.615850e-47 |
| Msa0712350 | Msa1361230 | 0.812526 | 4.056303e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712350 | MtrunA17_Chr5g0396771 | 91.566 | 83 | 7 | 0 | 5 | 87 | 9 | 91 | 1.55e-51 | 156 |
| Msa0712350 | MtrunA17_Chr4g0024181 | 45.833 | 72 | 39 | 0 | 9 | 80 | 2 | 73 | 9.40e-19 | 73.2 |
| Msa0712350 | MtrunA17_Chr2g0322831 | 54.839 | 62 | 24 | 1 | 17 | 78 | 20 | 77 | 1.93e-18 | 72.4 |
| Msa0712350 | MtrunA17_Chr2g0288361 | 40.789 | 76 | 42 | 1 | 5 | 80 | 2 | 74 | 1.42e-15 | 65.1 |
| Msa0712350 | MtrunA17_Chr4g0055981 | 56.410 | 39 | 17 | 0 | 35 | 73 | 113 | 151 | 2.76e-11 | 57.0 |
| Msa0712350 | MtrunA17_Chr8g0360111 | 56.410 | 39 | 17 | 0 | 35 | 73 | 83 | 121 | 2.85e-11 | 57.4 |
| Msa0712350 | MtrunA17_Chr4g0070641 | 55.000 | 40 | 18 | 0 | 34 | 73 | 69 | 108 | 5.53e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712350 | AT2G30420.1 | 63.415 | 82 | 24 | 1 | 6 | 87 | 17 | 92 | 1.15e-29 | 102 |
| Msa0712350 | AT5G53200.1 | 70.312 | 64 | 19 | 0 | 24 | 87 | 22 | 85 | 1.64e-29 | 101 |
| Msa0712350 | AT2G46410.1 | 60.811 | 74 | 29 | 0 | 13 | 86 | 16 | 89 | 1.89e-28 | 98.6 |
| Msa0712350 | AT2G30424.1 | 59.740 | 77 | 30 | 1 | 12 | 87 | 12 | 88 | 4.68e-27 | 95.1 |
| Msa0712350 | AT2G30432.1 | 65.152 | 66 | 23 | 0 | 19 | 84 | 19 | 84 | 9.89e-27 | 94.0 |
| Msa0712350 | AT4G01060.1 | 55.844 | 77 | 34 | 0 | 1 | 77 | 1 | 77 | 1.13e-25 | 90.9 |
| Msa0712350 | AT4G01060.2 | 63.492 | 63 | 23 | 0 | 15 | 77 | 12 | 74 | 5.11e-25 | 89.4 |
| Msa0712350 | AT1G01380.1 | 75.556 | 45 | 11 | 0 | 33 | 77 | 32 | 76 | 1.61e-20 | 78.2 |
| Msa0712350 | AT4G01060.3 | 69.565 | 46 | 14 | 0 | 32 | 77 | 30 | 75 | 1.37e-19 | 75.5 |
| Msa0712350 | AT5G52600.1 | 58.974 | 39 | 16 | 0 | 35 | 73 | 70 | 108 | 9.59e-12 | 58.2 |
Find 32 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATTTAGTACATAGTTTA+AGG | 0.125338 | 5_1:-4173398 | Msa0712350:three_prime_UTR |
| TTATCTTCACTTCTTTCTTT+TGG | 0.236926 | 5_1:+4173598 | None:intergenic |
| CGGAGGTTTGACTTGTGTTT+CGG | 0.239671 | 5_1:+4174543 | None:intergenic |
| CAGAAGAAATAGAGAGATTC+TGG | 0.240435 | 5_1:-4173649 | Msa0712350:CDS |
| GGAGGTTTGACTTGTGTTTC+GGG | 0.242590 | 5_1:+4174544 | None:intergenic |
| GGGAGATATTTGCCTTAGTT+TGG | 0.291933 | 5_1:+4174564 | None:intergenic |
| CTAGCATACAAACTTTGTTT+TGG | 0.300692 | 5_1:-4173504 | Msa0712350:three_prime_UTR |
| ACCACCAGGTAGATAAAATA+TGG | 0.317616 | 5_1:-4174597 | None:intergenic |
| TTGATAGCAGGTCGCATTCC+GGG | 0.323951 | 5_1:-4173680 | Msa0712350:CDS |
| TGTCTGAAGCAAGCTTTATA+TGG | 0.347994 | 5_1:-4173431 | Msa0712350:three_prime_UTR |
| TTTGTATTGCTTCTCGTTGA+AGG | 0.371662 | 5_1:-4173467 | Msa0712350:three_prime_UTR |
| GGAGATATTTGCCTTAGTTT+GGG | 0.373654 | 5_1:+4174565 | None:intergenic |
| TTTGATAGCAGGTCGCATTC+CGG | 0.383477 | 5_1:-4173681 | Msa0712350:CDS |
| CAATTATATCTCTCTCTCCT+AGG | 0.480221 | 5_1:-4173541 | Msa0712350:three_prime_UTR |
| GGAAGAACGTTCCCAAACTA+AGG | 0.483455 | 5_1:-4174576 | Msa0712350:CDS |
| TGTACGACCTAGTTGGAGAT+AGG | 0.497484 | 5_1:-4174243 | Msa0712350:intron |
| CAGAAGTGAGCAGCAATGAG+TGG | 0.497509 | 5_1:-4174312 | Msa0712350:CDS |
| CGCAGGATGTACGACCTAGT+TGG | 0.536525 | 5_1:-4174250 | Msa0712350:CDS |
| AACAGGTGGAATTTGATAGC+AGG | 0.539200 | 5_1:-4173692 | Msa0712350:intron |
| AAAATCAAGTGTAGGACAAA+CGG | 0.544304 | 5_1:+4173357 | None:intergenic |
| ATTTCTTCTGCTTTACGACC+CGG | 0.559635 | 5_1:+4173662 | None:intergenic |
| TAGAATAATCAATCATGCCT+AGG | 0.562767 | 5_1:+4173524 | None:intergenic |
| AAGATAAAGCAAATTAAACT+AGG | 0.566688 | 5_1:-4173582 | Msa0712350:three_prime_UTR |
| CATAGAGATGAGCGAGCAAG+AGG | 0.568119 | 5_1:-4174284 | Msa0712350:CDS |
| AAGAGGAGGATCTCATTCGC+AGG | 0.581290 | 5_1:-4174267 | Msa0712350:CDS |
| ACAAAAGGAAAATCAAGTGT+AGG | 0.581382 | 5_1:+4173349 | None:intergenic |
| TATAAAGCTTGCTTCAGACA+TGG | 0.595768 | 5_1:+4173434 | None:intergenic |
| AGAAGTGAGCAGCAATGAGT+GGG | 0.602111 | 5_1:-4174311 | Msa0712350:CDS |
| AGAGATGAGCGAGCAAGAGG+AGG | 0.612798 | 5_1:-4174281 | Msa0712350:CDS |
| AGATTAGAAACCACCTTCGG+AGG | 0.612968 | 5_1:+4174526 | None:intergenic |
| AATATTACCTATCTCCAACT+AGG | 0.621481 | 5_1:+4174236 | None:intergenic |
| AACACAAGTCAAACCTCCGA+AGG | 0.653483 | 5_1:-4174539 | Msa0712350:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGCAATAGAGAAAATAA+TGG | + | chr5_1:4173478-4173497 | None:intergenic | 20.0% |
| !! | AAACATTAAATACTAGTATG+AGG | + | chr5_1:4173586-4173605 | None:intergenic | 20.0% |
| !!! | TATCTTTTGCAAAATCATAA+TGG | + | chr5_1:4173873-4173892 | None:intergenic | 20.0% |
| !!! | TCTAATTAGTTCTAATAACT+TGG | + | chr5_1:4173991-4174010 | None:intergenic | 20.0% |
| !! | ATTAGAACTAATTAGAAACA+CGG | - | chr5_1:4173995-4174014 | Msa0712350:intron | 20.0% |
| !!! | CATATAAGCTTTTATATGAA+AGG | - | chr5_1:4174202-4174221 | Msa0712350:intron | 20.0% |
| !! | AAGATAAAGCAAATTAAACT+AGG | - | chr5_1:4174361-4174380 | Msa0712350:intron | 20.0% |
| !! | TGTATTTAGTACATAGTTTA+AGG | - | chr5_1:4174545-4174564 | Msa0712350:CDS | 20.0% |
| !! | AAAAGCAATAGAGAAAATAA+TGG | + | chr5_1:4173478-4173497 | None:intergenic | 20.0% |
| !! | AAACATTAAATACTAGTATG+AGG | + | chr5_1:4173586-4173605 | None:intergenic | 20.0% |
| !!! | TATCTTTTGCAAAATCATAA+TGG | + | chr5_1:4173873-4173892 | None:intergenic | 20.0% |
| !!! | TCTAATTAGTTCTAATAACT+TGG | + | chr5_1:4173991-4174010 | None:intergenic | 20.0% |
| !! | ATTAGAACTAATTAGAAACA+CGG | - | chr5_1:4173995-4174014 | Msa0712350:intron | 20.0% |
| !!! | CATATAAGCTTTTATATGAA+AGG | - | chr5_1:4174202-4174221 | Msa0712350:intron | 20.0% |
| !! | AAGATAAAGCAAATTAAACT+AGG | - | chr5_1:4174361-4174380 | Msa0712350:intron | 20.0% |
| !! | TGTATTTAGTACATAGTTTA+AGG | - | chr5_1:4174545-4174564 | Msa0712350:CDS | 20.0% |
| !! | TCTCTTTTATTACTTATACG+TGG | - | chr5_1:4173514-4173533 | Msa0712350:three_prime_UTR | 25.0% |
| !!! | TTTTAAGCTTTGACGTTTTA+AGG | - | chr5_1:4173767-4173786 | Msa0712350:intron | 25.0% |
| ! | TTACTAAAGATGTGTTTGAT+AGG | - | chr5_1:4174052-4174071 | Msa0712350:intron | 25.0% |
| !! | TTTTTATGTTGTATGGTGTT+TGG | - | chr5_1:4174133-4174152 | Msa0712350:intron | 25.0% |
| !! | TTATCTTCACTTCTTTCTTT+TGG | + | chr5_1:4174348-4174367 | None:intergenic | 25.0% |
| !! | TCTCTTTTATTACTTATACG+TGG | - | chr5_1:4173514-4173533 | Msa0712350:three_prime_UTR | 25.0% |
| !!! | TTTTAAGCTTTGACGTTTTA+AGG | - | chr5_1:4173767-4173786 | Msa0712350:intron | 25.0% |
| ! | TTACTAAAGATGTGTTTGAT+AGG | - | chr5_1:4174052-4174071 | Msa0712350:intron | 25.0% |
| !! | TTTTTATGTTGTATGGTGTT+TGG | - | chr5_1:4174133-4174152 | Msa0712350:intron | 25.0% |
| !! | TTATCTTCACTTCTTTCTTT+TGG | + | chr5_1:4174348-4174367 | None:intergenic | 25.0% |
| AGAGAAAATAATGGCATGTT+GGG | + | chr5_1:4173469-4173488 | None:intergenic | 30.0% | |
| TAGAGAAAATAATGGCATGT+TGG | + | chr5_1:4173470-4173489 | None:intergenic | 30.0% | |
| AATATTACCTATCTCCAACT+AGG | + | chr5_1:4173710-4173729 | None:intergenic | 30.0% | |
| ! | TATATTCCTTTGACGTTTTG+AGG | - | chr5_1:4173738-4173757 | Msa0712350:intron | 30.0% |
| AAAAAACCTCAAAACGTCAA+AGG | + | chr5_1:4173747-4173766 | None:intergenic | 30.0% | |
| TACAATTACAAAGAAGCTGA+GGG | - | chr5_1:4173823-4173842 | Msa0712350:intron | 30.0% | |
| TGCAAAATCATAATGGTTCA+CGG | + | chr5_1:4173866-4173885 | None:intergenic | 30.0% | |
| ! | TAATTGCATGTTTGGTAACA+TGG | + | chr5_1:4173950-4173969 | None:intergenic | 30.0% |
| TACGATACTAATTGCATGTT+TGG | + | chr5_1:4173958-4173977 | None:intergenic | 30.0% | |
| ! | GTTCTAATAACTTGGTCTTT+CGG | + | chr5_1:4173983-4174002 | None:intergenic | 30.0% |
| TAATTAGAAACACGGTGAAA+AGG | - | chr5_1:4174003-4174022 | Msa0712350:intron | 30.0% | |
| ! | GACCAACTTTTTATGTTGTA+TGG | - | chr5_1:4174126-4174145 | Msa0712350:intron | 30.0% |
| CACCATACAACATAAAAAGT+TGG | + | chr5_1:4174131-4174150 | None:intergenic | 30.0% | |
| TAGAATAATCAATCATGCCT+AGG | + | chr5_1:4174422-4174441 | None:intergenic | 30.0% | |
| !! | CTAGCATACAAACTTTGTTT+TGG | - | chr5_1:4174439-4174458 | Msa0712350:intron | 30.0% |
| AAAATCAAGTGTAGGACAAA+CGG | + | chr5_1:4174589-4174608 | None:intergenic | 30.0% | |
| AGAGAAAATAATGGCATGTT+GGG | + | chr5_1:4173469-4173488 | None:intergenic | 30.0% | |
| TAGAGAAAATAATGGCATGT+TGG | + | chr5_1:4173470-4173489 | None:intergenic | 30.0% | |
| AATATTACCTATCTCCAACT+AGG | + | chr5_1:4173710-4173729 | None:intergenic | 30.0% | |
| ! | TATATTCCTTTGACGTTTTG+AGG | - | chr5_1:4173738-4173757 | Msa0712350:intron | 30.0% |
| AAAAAACCTCAAAACGTCAA+AGG | + | chr5_1:4173747-4173766 | None:intergenic | 30.0% | |
| TACAATTACAAAGAAGCTGA+GGG | - | chr5_1:4173823-4173842 | Msa0712350:intron | 30.0% | |
| TGCAAAATCATAATGGTTCA+CGG | + | chr5_1:4173866-4173885 | None:intergenic | 30.0% | |
| ! | TAATTGCATGTTTGGTAACA+TGG | + | chr5_1:4173950-4173969 | None:intergenic | 30.0% |
| TACGATACTAATTGCATGTT+TGG | + | chr5_1:4173958-4173977 | None:intergenic | 30.0% | |
| ! | GTTCTAATAACTTGGTCTTT+CGG | + | chr5_1:4173983-4174002 | None:intergenic | 30.0% |
| TAATTAGAAACACGGTGAAA+AGG | - | chr5_1:4174003-4174022 | Msa0712350:intron | 30.0% | |
| ! | GACCAACTTTTTATGTTGTA+TGG | - | chr5_1:4174126-4174145 | Msa0712350:intron | 30.0% |
| CACCATACAACATAAAAAGT+TGG | + | chr5_1:4174131-4174150 | None:intergenic | 30.0% | |
| TAGAATAATCAATCATGCCT+AGG | + | chr5_1:4174422-4174441 | None:intergenic | 30.0% | |
| !! | CTAGCATACAAACTTTGTTT+TGG | - | chr5_1:4174439-4174458 | Msa0712350:intron | 30.0% |
| AAAATCAAGTGTAGGACAAA+CGG | + | chr5_1:4174589-4174608 | None:intergenic | 30.0% | |
| GGAGATATTTGCCTTAGTTT+GGG | + | chr5_1:4173381-4173400 | None:intergenic | 35.0% | |
| AGAAAATAATGGCATGTTGG+GGG | + | chr5_1:4173467-4173486 | None:intergenic | 35.0% | |
| GAGAAAATAATGGCATGTTG+GGG | + | chr5_1:4173468-4173487 | None:intergenic | 35.0% | |
| TATACGTGGTACCAATTAAG+AGG | - | chr5_1:4173528-4173547 | Msa0712350:three_prime_UTR | 35.0% | |
| ATGCATCATGTCCTCTTAAT+TGG | + | chr5_1:4173542-4173561 | None:intergenic | 35.0% | |
| CTACAATTACAAAGAAGCTG+AGG | - | chr5_1:4173822-4173841 | Msa0712350:intron | 35.0% | |
| TTATGTTGTATGGTGTTTGG+TGG | - | chr5_1:4174136-4174155 | Msa0712350:intron | 35.0% | |
| CAGAAGAAATAGAGAGATTC+TGG | - | chr5_1:4174294-4174313 | Msa0712350:CDS | 35.0% | |
| ! | TCTTCACTTCTTTCTTTTGG+CGG | + | chr5_1:4174345-4174364 | None:intergenic | 35.0% |
| CAATTATATCTCTCTCTCCT+AGG | - | chr5_1:4174402-4174421 | Msa0712350:intron | 35.0% | |
| TTTGTATTGCTTCTCGTTGA+AGG | - | chr5_1:4174476-4174495 | Msa0712350:intron | 35.0% | |
| ! | TATAAAGCTTGCTTCAGACA+TGG | + | chr5_1:4174512-4174531 | None:intergenic | 35.0% |
| ! | TGTCTGAAGCAAGCTTTATA+TGG | - | chr5_1:4174512-4174531 | Msa0712350:intron | 35.0% |
| GGAGATATTTGCCTTAGTTT+GGG | + | chr5_1:4173381-4173400 | None:intergenic | 35.0% | |
| AGAAAATAATGGCATGTTGG+GGG | + | chr5_1:4173467-4173486 | None:intergenic | 35.0% | |
| GAGAAAATAATGGCATGTTG+GGG | + | chr5_1:4173468-4173487 | None:intergenic | 35.0% | |
| TATACGTGGTACCAATTAAG+AGG | - | chr5_1:4173528-4173547 | Msa0712350:three_prime_UTR | 35.0% | |
| ATGCATCATGTCCTCTTAAT+TGG | + | chr5_1:4173542-4173561 | None:intergenic | 35.0% | |
| CTACAATTACAAAGAAGCTG+AGG | - | chr5_1:4173822-4173841 | Msa0712350:intron | 35.0% | |
| TTATGTTGTATGGTGTTTGG+TGG | - | chr5_1:4174136-4174155 | Msa0712350:intron | 35.0% | |
| CAGAAGAAATAGAGAGATTC+TGG | - | chr5_1:4174294-4174313 | Msa0712350:CDS | 35.0% | |
| ! | TCTTCACTTCTTTCTTTTGG+CGG | + | chr5_1:4174345-4174364 | None:intergenic | 35.0% |
| CAATTATATCTCTCTCTCCT+AGG | - | chr5_1:4174402-4174421 | Msa0712350:intron | 35.0% | |
| TTTGTATTGCTTCTCGTTGA+AGG | - | chr5_1:4174476-4174495 | Msa0712350:intron | 35.0% | |
| ! | TATAAAGCTTGCTTCAGACA+TGG | + | chr5_1:4174512-4174531 | None:intergenic | 35.0% |
| ! | TGTCTGAAGCAAGCTTTATA+TGG | - | chr5_1:4174512-4174531 | Msa0712350:intron | 35.0% |
| GGGAGATATTTGCCTTAGTT+TGG | + | chr5_1:4173382-4173401 | None:intergenic | 40.0% | |
| GGTAGATTAGAAACCACCTT+CGG | + | chr5_1:4173423-4173442 | None:intergenic | 40.0% | |
| TAGAAACTACACAACGCAAC+AGG | - | chr5_1:4174234-4174253 | Msa0712350:intron | 40.0% | |
| ! | AACAGGTGGAATTTGATAGC+AGG | - | chr5_1:4174251-4174270 | Msa0712350:CDS | 40.0% |
| ATTTCTTCTGCTTTACGACC+CGG | + | chr5_1:4174284-4174303 | None:intergenic | 40.0% | |
| ! | GTCCTACACTTGATTTTCCT+TGG | - | chr5_1:4174592-4174611 | Msa0712350:exon | 40.0% |
| GGGAGATATTTGCCTTAGTT+TGG | + | chr5_1:4173382-4173401 | None:intergenic | 40.0% | |
| GGTAGATTAGAAACCACCTT+CGG | + | chr5_1:4173423-4173442 | None:intergenic | 40.0% | |
| TAGAAACTACACAACGCAAC+AGG | - | chr5_1:4174234-4174253 | Msa0712350:intron | 40.0% | |
| ! | AACAGGTGGAATTTGATAGC+AGG | - | chr5_1:4174251-4174270 | Msa0712350:CDS | 40.0% |
| ATTTCTTCTGCTTTACGACC+CGG | + | chr5_1:4174284-4174303 | None:intergenic | 40.0% | |
| GGAAGAACGTTCCCAAACTA+AGG | - | chr5_1:4173367-4173386 | Msa0712350:three_prime_UTR | 45.0% | |
| !! | GGAGGTTTGACTTGTGTTTC+GGG | + | chr5_1:4173402-4173421 | None:intergenic | 45.0% |
| !! | CGGAGGTTTGACTTGTGTTT+CGG | + | chr5_1:4173403-4173422 | None:intergenic | 45.0% |
| AACACAAGTCAAACCTCCGA+AGG | - | chr5_1:4173404-4173423 | Msa0712350:three_prime_UTR | 45.0% | |
| AGATTAGAAACCACCTTCGG+AGG | + | chr5_1:4173420-4173439 | None:intergenic | 45.0% | |
| AATAATGGCATGTTGGGGGT+GGG | + | chr5_1:4173463-4173482 | None:intergenic | 45.0% | |
| AAATAATGGCATGTTGGGGG+TGG | + | chr5_1:4173464-4173483 | None:intergenic | 45.0% | |
| AGAAGTGAGCAGCAATGAGT+GGG | - | chr5_1:4173632-4173651 | Msa0712350:CDS | 45.0% | |
| TGTACGACCTAGTTGGAGAT+AGG | - | chr5_1:4173700-4173719 | Msa0712350:intron | 45.0% | |
| AAACTACACAACGCAACAGG+TGG | - | chr5_1:4174237-4174256 | Msa0712350:intron | 45.0% | |
| ! | TTTGATAGCAGGTCGCATTC+CGG | - | chr5_1:4174262-4174281 | Msa0712350:CDS | 45.0% |
| GGAAGAACGTTCCCAAACTA+AGG | - | chr5_1:4173367-4173386 | Msa0712350:three_prime_UTR | 45.0% | |
| !! | GGAGGTTTGACTTGTGTTTC+GGG | + | chr5_1:4173402-4173421 | None:intergenic | 45.0% |
| !! | CGGAGGTTTGACTTGTGTTT+CGG | + | chr5_1:4173403-4173422 | None:intergenic | 45.0% |
| AACACAAGTCAAACCTCCGA+AGG | - | chr5_1:4173404-4173423 | Msa0712350:three_prime_UTR | 45.0% | |
| AGATTAGAAACCACCTTCGG+AGG | + | chr5_1:4173420-4173439 | None:intergenic | 45.0% | |
| AATAATGGCATGTTGGGGGT+GGG | + | chr5_1:4173463-4173482 | None:intergenic | 45.0% | |
| AAATAATGGCATGTTGGGGG+TGG | + | chr5_1:4173464-4173483 | None:intergenic | 45.0% | |
| AGAAGTGAGCAGCAATGAGT+GGG | - | chr5_1:4173632-4173651 | Msa0712350:CDS | 45.0% | |
| TGTACGACCTAGTTGGAGAT+AGG | - | chr5_1:4173700-4173719 | Msa0712350:intron | 45.0% | |
| AAACTACACAACGCAACAGG+TGG | - | chr5_1:4174237-4174256 | Msa0712350:intron | 45.0% | |
| ! | TTTGATAGCAGGTCGCATTC+CGG | - | chr5_1:4174262-4174281 | Msa0712350:CDS | 45.0% |
| ACAAGTCAAACCTCCGAAGG+TGG | - | chr5_1:4173407-4173426 | Msa0712350:three_prime_UTR | 50.0% | |
| CAGAAGTGAGCAGCAATGAG+TGG | - | chr5_1:4173631-4173650 | Msa0712350:CDS | 50.0% | |
| CATAGAGATGAGCGAGCAAG+AGG | - | chr5_1:4173659-4173678 | Msa0712350:CDS | 50.0% | |
| AAGAGGAGGATCTCATTCGC+AGG | - | chr5_1:4173676-4173695 | Msa0712350:CDS | 50.0% | |
| ! | TTGATAGCAGGTCGCATTCC+GGG | - | chr5_1:4174263-4174282 | Msa0712350:CDS | 50.0% |
| ACAAGTCAAACCTCCGAAGG+TGG | - | chr5_1:4173407-4173426 | Msa0712350:three_prime_UTR | 50.0% | |
| CAGAAGTGAGCAGCAATGAG+TGG | - | chr5_1:4173631-4173650 | Msa0712350:CDS | 50.0% | |
| CATAGAGATGAGCGAGCAAG+AGG | - | chr5_1:4173659-4173678 | Msa0712350:CDS | 50.0% | |
| AAGAGGAGGATCTCATTCGC+AGG | - | chr5_1:4173676-4173695 | Msa0712350:CDS | 50.0% | |
| ! | TTGATAGCAGGTCGCATTCC+GGG | - | chr5_1:4174263-4174282 | Msa0712350:CDS | 50.0% |
| AGAGATGAGCGAGCAAGAGG+AGG | - | chr5_1:4173662-4173681 | Msa0712350:CDS | 55.0% | |
| CGCAGGATGTACGACCTAGT+TGG | - | chr5_1:4173693-4173712 | Msa0712350:intron | 55.0% | |
| AGAGATGAGCGAGCAAGAGG+AGG | - | chr5_1:4173662-4173681 | Msa0712350:CDS | 55.0% | |
| CGCAGGATGTACGACCTAGT+TGG | - | chr5_1:4173693-4173712 | Msa0712350:intron | 55.0% | |
| TGGGTGGGTGTGTGTGTTGG+GGG | + | chr5_1:4173444-4173463 | None:intergenic | 60.0% | |
| GTGGGTGGGTGTGTGTGTTG+GGG | + | chr5_1:4173445-4173464 | None:intergenic | 60.0% | |
| GGTGGGTGGGTGTGTGTGTT+GGG | + | chr5_1:4173446-4173465 | None:intergenic | 60.0% | |
| ATGGCATGTTGGGGGTGGGT+GGG | + | chr5_1:4173459-4173478 | None:intergenic | 60.0% | |
| AATGGCATGTTGGGGGTGGG+TGG | + | chr5_1:4173460-4173479 | None:intergenic | 60.0% | |
| TGGGTGGGTGTGTGTGTTGG+GGG | + | chr5_1:4173444-4173463 | None:intergenic | 60.0% | |
| GTGGGTGGGTGTGTGTGTTG+GGG | + | chr5_1:4173445-4173464 | None:intergenic | 60.0% | |
| GGTGGGTGGGTGTGTGTGTT+GGG | + | chr5_1:4173446-4173465 | None:intergenic | 60.0% | |
| ATGGCATGTTGGGGGTGGGT+GGG | + | chr5_1:4173459-4173478 | None:intergenic | 60.0% | |
| AATGGCATGTTGGGGGTGGG+TGG | + | chr5_1:4173460-4173479 | None:intergenic | 60.0% | |
| GGGTGGGTGGGTGTGTGTGT+TGG | + | chr5_1:4173447-4173466 | None:intergenic | 65.0% | |
| GGGTGGGTGGGTGTGTGTGT+TGG | + | chr5_1:4173447-4173466 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 4173353 | 4174612 | 4173353 | ID=Msa0712350;Name=Msa0712350 |
| chr5_1 | mRNA | 4173353 | 4174612 | 4173353 | ID=Msa0712350-mRNA-1;Parent=Msa0712350;Name=Msa0712350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=12|0.5|0.66|1|0.5|0.33|3|251|87 |
| chr5_1 | exon | 4173353 | 4173709 | 4173353 | ID=Msa0712350-mRNA-1:exon:1649;Parent=Msa0712350-mRNA-1 |
| chr5_1 | exon | 4174244 | 4174340 | 4174244 | ID=Msa0712350-mRNA-1:exon:1648;Parent=Msa0712350-mRNA-1 |
| chr5_1 | exon | 4174540 | 4174612 | 4174540 | ID=Msa0712350-mRNA-1:exon:1647;Parent=Msa0712350-mRNA-1 |
| chr5_1 | five_prime_UTR | 4174601 | 4174612 | 4174601 | ID=Msa0712350-mRNA-1:five_prime_utr;Parent=Msa0712350-mRNA-1 |
| chr5_1 | CDS | 4174540 | 4174600 | 4174540 | ID=Msa0712350-mRNA-1:cds;Parent=Msa0712350-mRNA-1 |
| chr5_1 | CDS | 4174244 | 4174340 | 4174244 | ID=Msa0712350-mRNA-1:cds;Parent=Msa0712350-mRNA-1 |
| chr5_1 | CDS | 4173604 | 4173709 | 4173604 | ID=Msa0712350-mRNA-1:cds;Parent=Msa0712350-mRNA-1 |
| chr5_1 | three_prime_UTR | 4173353 | 4173603 | 4173353 | ID=Msa0712350-mRNA-1:three_prime_utr;Parent=Msa0712350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
