AlfalfaGEDB | Msa0754830

M. sativa cultivar zhongmu-4 / Msa0754830

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0311860	Msa0754830	0.807556	4.771988e-50	-8.615850e-47
Msa0484780	Msa0754830	0.802586	5.229364e-49	-8.615850e-47
Msa0657970	Msa0754830	0.823827	1.123295e-53	-8.615850e-47
Msa0739120	Msa0754830	0.806056	9.898795e-50	-8.615850e-47
Msa0754830	Msa0788710	0.804609	1.989818e-49	-8.615850e-47
Msa0754830	Msa1082500	0.810604	1.061449e-50	-8.615850e-47
Msa0754830	Msa1427760	0.801889	7.275959e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 58 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAATATGGGAAAATAA+TGG	0.391252	5_2:+8537465	None:intergenic
AAAGGTTTGTGTTGTAACGT+AGG	0.548427	5_2:+8537957	None:intergenic
AAATAAGATGAGAAAGAGTT+CGG	0.348384	5_2:+8537903	None:intergenic
AATAAAGGAGAAAATGTATC+AGG	0.382572	5_2:+8538086	None:intergenic
AATAAGATGAGAAAGAGTTC+GGG	0.501569	5_2:+8537904	None:intergenic
AATATCTAAAGTGGATTGGC+AGG	0.421646	5_2:-8534364	Msa0754830:three_prime_UTR
AATCAAGAAAAGTCTTTGTT+TGG	0.318002	5_2:+8534730	None:intergenic
AATGGCATGGGATCTCGTGT+GGG	0.632770	5_2:-8534515	Msa0754830:three_prime_UTR
AGAAAACGAAGAAGAAATTA+GGG	0.406138	5_2:-8537531	Msa0754830:five_prime_UTR
AGAGGGAGTGGTGGAATGTT+TGG	0.333140	5_2:+8537987	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAGGAAATTAATGTTGGAT+AGG	+	chr5_2:8534379-8534398	None:intergenic	30.0%
TGGAATGAGGAAATTAATGT+TGG	+	chr5_2:8534384-8534403	None:intergenic	30.0%
GAGAGTAAAAAAATGGAATG+AGG	+	chr5_2:8534397-8534416	None:intergenic	30.0%
GATGAGAGAGAGTAAAAAAA+TGG	+	chr5_2:8534404-8534423	None:intergenic	30.0%
GAAGAAGAAGATGAAGAAAA+AGG	+	chr5_2:8534503-8534522	None:intergenic	30.0%
AATAAGATGAGAAAGAGTTC+GGG	+	chr5_2:8534538-8534557	None:intergenic	30.0%
ATCCTTCACGAAAAGATTAT+GGG	-	chr5_2:8534592-8534611	Msa0754830:three_prime_UTR	30.0%
ATTCACTCAACATGTGAAAA+AGG	-	chr5_2:8534743-8534762	Msa0754830:CDS	30.0%
TTCACTCAACATGTGAAAAA+GGG	-	chr5_2:8534744-8534763	Msa0754830:CDS	30.0%
CATGAGACTAAATGTGAAAA+GGG	+	chr5_2:8534852-8534871	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	8534335	8538126	8534335	ID=Msa0754830;Name=Msa0754830
chr5_2	mRNA	8534335	8538126	8534335	ID=Msa0754830-mRNA-1;Parent=Msa0754830;Name=Msa0754830-mRNA-1;_AED=0.39;_eAED=0.39;_QI=652\|0.75\|0.8\|1\|0.25\|0.4\|5\|302\|95
chr5_2	exon	8534335	8534822	8534335	ID=Msa0754830-mRNA-1:exon:3917;Parent=Msa0754830-mRNA-1
chr5_2	exon	8535730	8535761	8535730	ID=Msa0754830-mRNA-1:exon:3916;Parent=Msa0754830-mRNA-1
chr5_2	exon	8536118	8536164	8536118	ID=Msa0754830-mRNA-1:exon:3915;Parent=Msa0754830-mRNA-1
chr5_2	exon	8537339	8537563	8537339	ID=Msa0754830-mRNA-1:exon:3914;Parent=Msa0754830-mRNA-1
chr5_2	exon	8537677	8538126	8537677	ID=Msa0754830-mRNA-1:exon:3913;Parent=Msa0754830-mRNA-1
chr5_2	five_prime_UTR	8537677	8538126	8537677	ID=Msa0754830-mRNA-1:five_prime_utr;Parent=Msa0754830-mRNA-1
chr5_2	five_prime_UTR	8537362	8537563	8537362	ID=Msa0754830-mRNA-1:five_prime_utr;Parent=Msa0754830-mRNA-1
chr5_2	CDS	8537339	8537361	8537339	ID=Msa0754830-mRNA-1:cds;Parent=Msa0754830-mRNA-1
chr5_2	CDS	8536118	8536164	8536118	ID=Msa0754830-mRNA-1:cds;Parent=Msa0754830-mRNA-1
chr5_2	CDS	8535730	8535761	8535730	ID=Msa0754830-mRNA-1:cds;Parent=Msa0754830-mRNA-1
chr5_2	CDS	8534637	8534822	8534637	ID=Msa0754830-mRNA-1:cds;Parent=Msa0754830-mRNA-1
chr5_2	three_prime_UTR	8534335	8534636	8534335	ID=Msa0754830-mRNA-1:three_prime_utr;Parent=Msa0754830-mRNA-1

Gene Sequence	>Msa0754830 ATGACTAATCGGATGGGAACAGGATTTATTCAAAGGAATGGAAATGAAGGGTTTATTAGATATGACTCAGGCTCAGAGTTGTTGATGAAGGTTAGGAATGAGTCTTTATCTGAGATAAAGTTGGAGCTAAAGAACAAGCAGAGCGACCAAGAGATAAAGTTCAAGGGCAATGCCAAACAAAGACTTTTCTTGATTAATTCTATTGTAGGAGATAAAAAAAAACTTTTAGAGTTGATTCGTATCATATTCATTTTATTTATTATTATTTTGACAAGAGGGTTGAATTAG
Protein sequence	>Msa0754830 MTNRMGTGFIQRNGNEGFIRYDSGSELLMKVRNESLSEIKLELKNKQSDQEIKFKGNAKQRLFLINSIVGDKKKLLELIRIIFILFIIILTRGLN*