AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0754950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0754950 MtrunA17_Chr5g0399831 93.241 577 13 1 1 551 408 984 0.0 1105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0754950 AT5G41150.1 59.036 581 180 5 2 551 403 956 0.0 677
Msa0754950 AT5G41150.3 55.859 512 168 5 2 482 403 887 0.0 555
Msa0754950 AT5G41150.2 48.243 313 130 4 2 309 403 688 1.10e-86 282
Msa0754950 AT5G41150.4 48.243 313 130 4 2 309 403 688 1.10e-86 282

Find 248 sgRNAs with CRISPR-Local

Find 447 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCCTCAGGCGATGGTTTC+TGG 0.039215 5_2:-8694027 Msa0754950:five_prime_UTR
CAGTCGGGATTTGGTGGTTT+TGG 0.087312 5_2:+8694289 None:intergenic
TTTGAGATGGAAATTGATTT+TGG 0.169113 5_2:+8694323 None:intergenic
CACCGGATGTGGTGGATATT+AGG 0.180382 5_2:-8693903 Msa0754950:five_prime_UTR
TTCCTTTCCACGCAAATTAA+TGG 0.186365 5_2:+8689940 None:intergenic
TGTATTCTGTCCAAGGGATA+TGG 0.222718 5_2:+8691133 None:intergenic
GGTGACTTACTTGAAATATT+TGG 0.224245 5_2:-8693015 Msa0754950:five_prime_UTR
CCAAAGGATCCTAAGGGTTT+TGG 0.230872 5_2:-8691176 Msa0754950:CDS
ACATTTATGGCCGAGATTTC+AGG 0.231804 5_2:-8693956 Msa0754950:five_prime_UTR
GATCCAATTTGGCATACTTT+AGG 0.235008 5_2:-8693718 Msa0754950:five_prime_UTR
TTCCCTAAAGTATGCCAAAT+TGG 0.239779 5_2:+8693715 None:intergenic
GTGTTACAGATTCTAATTAT+AGG 0.253075 5_2:-8688666 Msa0754950:CDS
GGTTACGGAAGTTACATTTA+TGG 0.258472 5_2:-8693969 Msa0754950:five_prime_UTR
CGTGGAAAGGAAAAGTATTC+AGG 0.296025 5_2:-8689929 Msa0754950:CDS
TGGAAAAGGCAAGAGAAAAT+TGG 0.303152 5_2:-8690982 Msa0754950:CDS
TATCAGAGTGGGCATGGTTT+AGG 0.314337 5_2:-8690257 Msa0754950:intron
TAGCATCTAGAAAGTCTCTA+AGG 0.318207 5_2:+8688548 None:intergenic
AGATACCCCTCAGTCTGATT+TGG 0.321552 5_2:-8691018 Msa0754950:CDS
GAGAGGACGATGAAGTGTTT+AGG 0.322791 5_2:-8693991 Msa0754950:five_prime_UTR
ATCCAATTTGGCATACTTTA+GGG 0.326230 5_2:-8693717 Msa0754950:five_prime_UTR
CGGTGATTTCAGTCGGGATT+TGG 0.329036 5_2:+8694280 None:intergenic
TACCAGTCTGCCAGTGATAT+TGG 0.329348 5_2:-8689399 Msa0754950:intron
CAACTTTGATATAATGCTAT+TGG 0.331006 5_2:+8689362 None:intergenic
AGAAAAGCTAGCTGAAATAA+TGG 0.331086 5_2:-8688593 Msa0754950:CDS
TCCAAATATTCTTCATCAAA+AGG 0.334364 5_2:-8690013 Msa0754950:CDS
ACCGGATGTGGTGGATATTA+GGG 0.338897 5_2:-8693902 Msa0754950:five_prime_UTR
AAGCTGAGAATCCCTCTAAA+AGG 0.342926 5_2:-8690602 Msa0754950:CDS
CCAAAACCCTTAGGATCCTT+TGG 0.343817 5_2:+8691176 None:intergenic
AGAGGACGATGAAGTGTTTA+GGG 0.345932 5_2:-8693990 Msa0754950:five_prime_UTR
GCAGGAGCATGATGCACTTC+TGG 0.348700 5_2:-8691090 Msa0754950:CDS
TGTTACAGATTCTAATTATA+GGG 0.349584 5_2:-8688665 Msa0754950:CDS
AAAAGCTTCGGTGGAAGTTT+CGG 0.357591 5_2:+8694107 None:intergenic
AGAGATGAGGAAGACGAATA+AGG 0.361182 5_2:-8693812 Msa0754950:five_prime_UTR
CTGCATCAATATATCATCAT+TGG 0.362339 5_2:-8688435 Msa0754950:three_prime_UTR
TAGTATTTAAATCTGAATCT+AGG 0.363787 5_2:+8690222 None:intergenic
TGAAAGTGATCAGCCTATAC+TGG 0.367474 5_2:-8690697 Msa0754950:CDS
GTAAAACAAACCTGGTCAAT+TGG 0.376126 5_2:+8690459 None:intergenic
GGAAAAGGCAAGAGAAAATT+GGG 0.376193 5_2:-8690981 Msa0754950:CDS
GAAAGCGATTGTTGAAGTTA+TGG 0.378027 5_2:-8693848 Msa0754950:five_prime_UTR
GAAGTGGCAAGTGGTAAAAC+TGG 0.379166 5_2:-8690900 Msa0754950:CDS
TTCTAATTATAGGGCCATAA+TGG 0.379915 5_2:-8688656 Msa0754950:CDS
CCATCTCTTGCCATGGCATC+AGG 0.379982 5_2:+8690753 None:intergenic
AGACAATTCATTTGTCGAAA+TGG 0.381307 5_2:-8688497 Msa0754950:three_prime_UTR
GAACCATTGATGAATAATAA+TGG 0.385614 5_2:+8694514 None:intergenic
CACCAATACAATGCCATTGC+CGG 0.386145 5_2:+8692214 None:intergenic
TCTGCTATAAGCTAACTTAT+CGG 0.387286 5_2:+8693439 None:intergenic
GGAGACAGTTGGATCCAATT+TGG 0.389564 5_2:-8693729 Msa0754950:five_prime_UTR
AATGGATGGGTGTAAAAGTT+TGG 0.391473 5_2:-8688638 Msa0754950:CDS
TGAAATATTTGCTTCACTAA+AGG 0.402091 5_2:-8689274 Msa0754950:CDS
CCACGCAAATTAATGGTGAT+AGG 0.403076 5_2:+8689947 None:intergenic
AACTTTGATATAATGCTATT+GGG 0.405991 5_2:+8689363 None:intergenic
CGATGAAGTGTTTAGGGTTA+CGG 0.407072 5_2:-8693984 Msa0754950:five_prime_UTR
GAGAGAGTGACGGTGGTTAA+CGG 0.411126 5_2:+8694248 None:intergenic
GAGTTTCTAAGACGACTTCC+TGG 0.412129 5_2:-8688688 Msa0754950:CDS
GGTGGACATGTTCGTGGAAA+AGG 0.414905 5_2:-8690996 Msa0754950:CDS
AGAAAATTGGGGAATAGAAA+TGG 0.415060 5_2:-8690969 Msa0754950:CDS
GAAAAGCTAGCTGAAATAAT+GGG 0.415675 5_2:-8688592 Msa0754950:CDS
GATACCCCTCAGTCTGATTT+GGG 0.419551 5_2:-8691017 Msa0754950:CDS
TAAGACGTTGAGGAAGTTGT+TGG 0.419685 5_2:-8693665 Msa0754950:five_prime_UTR
ATTTCAGGTTTATGTGAGTC+AGG 0.422071 5_2:-8693941 Msa0754950:five_prime_UTR
GAGGATTTGACGGTGGAGAA+TGG 0.423362 5_2:-8693781 Msa0754950:five_prime_UTR
CATCCATTATTATTCATCAA+TGG 0.429516 5_2:-8694517 Msa0754950:five_prime_UTR
GGTTCCGATGACGAAGTATA+TGG 0.431073 5_2:-8693881 Msa0754950:five_prime_UTR
TAGTGTTCAGAGTAACAATA+AGG 0.435873 5_2:-8690925 Msa0754950:CDS
CTTGGACAGAATACAGAAAC+TGG 0.436932 5_2:-8691125 Msa0754950:CDS
AATTCTTACAATAAAAGCTT+CGG 0.439814 5_2:+8694095 None:intergenic
TCTCTTACAAAGGTCATGTC+TGG 0.440456 5_2:+8690639 None:intergenic
CCAAATATTCTTCATCAAAA+GGG 0.444882 5_2:-8690012 Msa0754950:CDS
GTATAGGCTGATCACTTTCA+AGG 0.445016 5_2:+8690700 None:intergenic
TTGGATTTGAGAGTGGGAGA+AGG 0.445667 5_2:+8694342 None:intergenic
CATAGTATTGGAAGAAGTCT+TGG 0.450907 5_2:-8692571 Msa0754950:five_prime_UTR
TTCCCCGGCTACGTATAATC+TGG 0.457803 5_2:-8689320 Msa0754950:CDS
TTGGAATTGAAAATTCTTGA+AGG 0.459000 5_2:+8694575 None:intergenic
CTAGAGCCATCAATAATGAT+TGG 0.459040 5_2:+8690945 None:intergenic
CACCATTAATTTGCGTGGAA+AGG 0.459042 5_2:-8689942 Msa0754950:CDS
TTCTGATCGTCCTCAGGCGA+TGG 0.459265 5_2:-8694034 Msa0754950:five_prime_UTR
AGGATTTGACGGTGGAGAAT+GGG 0.460766 5_2:-8693780 Msa0754950:five_prime_UTR
TGCATCAATATATCATCATT+GGG 0.460824 5_2:-8688434 Msa0754950:three_prime_UTR
AGTTGTTGGATTATCTAGTC+AGG 0.461734 5_2:-8693651 Msa0754950:five_prime_UTR
AATGGCCCAATCATTATTGA+TGG 0.462309 5_2:-8690951 Msa0754950:CDS
GGATATTCTTGAAGAGGTAG+AGG 0.463581 5_2:-8692294 Msa0754950:five_prime_UTR
GGACTCACAATTCTCTCATC+AGG 0.464055 5_2:-8694441 Msa0754950:five_prime_UTR
TACTATGCCATGATTTGAAC+TGG 0.464434 5_2:+8692587 None:intergenic
TTCAAATCATGGCATAGTAT+TGG 0.467334 5_2:-8692583 Msa0754950:five_prime_UTR
CTTTGTAGTTCTTTGTATTG+TGG 0.468359 5_2:-8693546 Msa0754950:five_prime_UTR
GTATTCTGTCCAAGGGATAT+GGG 0.469017 5_2:+8691134 None:intergenic
CTTCTCCACTCTTCTTCACA+AGG 0.470225 5_2:-8694384 Msa0754950:five_prime_UTR
GACTTCGATTTCTCTTACAA+AGG 0.470567 5_2:+8690629 None:intergenic
AAAGAAGCCAAAGGATCCTA+AGG 0.472095 5_2:-8691183 Msa0754950:CDS
GCTGTTTATCAGAGTGGGCA+TGG 0.475784 5_2:-8690263 Msa0754950:intron
GGATATAGTCACCAACTTCA+AGG 0.475904 5_2:+8689968 None:intergenic
AGAGGTTGATAAAGAAATGC+AGG 0.480477 5_2:-8690162 Msa0754950:intron
TGCATTGAGGATTAATATAC+CGG 0.483156 5_2:+8694140 None:intergenic
GCAAGTATACGTAGAGAGAA+TGG 0.483469 5_2:-8690525 Msa0754950:CDS
ACCCTAATATCCACCACATC+CGG 0.483836 5_2:+8693901 None:intergenic
ATGTGAGTCAGGAGCTTGAA+AGG 0.485830 5_2:-8693930 Msa0754950:five_prime_UTR
CTCCCTACCTCAACAATCTC+CGG 0.486509 5_2:-8694159 Msa0754950:five_prime_UTR
GTGGGTGTCCCTTCGGAAGA+AGG 0.486830 5_2:-8689213 Msa0754950:CDS
CACCGGCAATGGCATTGTAT+TGG 0.489183 5_2:-8692216 Msa0754950:CDS
TCGTAGACCAGGGCTCTGTT+TGG 0.489333 5_2:-8693479 Msa0754950:five_prime_UTR
GAATCCCTCTAAAAGGTTGA+AGG 0.491830 5_2:-8690595 Msa0754950:CDS
CGGAAATTGAATGTGCATTG+AGG 0.491952 5_2:+8694127 None:intergenic
AATGAGAGTGGGTGTCCCTT+CGG 0.493890 5_2:-8689220 Msa0754950:CDS
CTCTTCCAGAGTTTCACATC+AGG 0.496021 5_2:-8689904 Msa0754950:CDS
AATTATAGGGCCATAATGGA+TGG 0.499805 5_2:-8688652 Msa0754950:CDS
CTGTAGACGATGCAGTTCTT+CGG 0.500641 5_2:-8690788 Msa0754950:CDS
CTCACATAAACCTGAAATCT+CGG 0.502105 5_2:+8693946 None:intergenic
TTAAGAATCCCAAAACCCTT+AGG 0.504091 5_2:+8691167 None:intergenic
CCTGATGCCATGGCAAGAGA+TGG 0.505249 5_2:-8690753 Msa0754950:CDS
CAGTTTCTGTATTCTGTCCA+AGG 0.508921 5_2:+8691126 None:intergenic
CGGCAATGGCATTGTATTGG+TGG 0.510338 5_2:-8692213 Msa0754950:CDS
AGACCAGATTATACGTAGCC+GGG 0.510695 5_2:+8689317 None:intergenic
GAGTAACAATAAGGAGGAAG+TGG 0.511062 5_2:-8690916 Msa0754950:CDS
GGTTGATGTGGAGGATTTGA+CGG 0.512007 5_2:-8693791 Msa0754950:five_prime_UTR
TGAAAGGGATCCACCGGATG+TGG 0.516823 5_2:-8693914 Msa0754950:five_prime_UTR
AGGTCGGCGGTGATTTCAGT+CGG 0.517477 5_2:+8694273 None:intergenic
TCCACAATTCCTTCTTCCGA+AGG 0.518345 5_2:+8689204 None:intergenic
TAGAGCCATCAATAATGATT+GGG 0.519009 5_2:+8690946 None:intergenic
AACTGGTGGCATCAATAAGC+AGG 0.519992 5_2:-8691108 Msa0754950:CDS
AGTATTTAAATCTGAATCTA+GGG 0.523014 5_2:+8690223 None:intergenic
AGAGTGGAGAAGAAGAAGAG+AGG 0.523516 5_2:+8694395 None:intergenic
GACGAATAAGGTTGATGTGG+AGG 0.525666 5_2:-8693800 Msa0754950:five_prime_UTR
GGAGTCACTCCCATATCCCT+TGG 0.526144 5_2:-8691143 Msa0754950:CDS
TCACCAACTTCAAGGGTCAC+TGG 0.527041 5_2:+8689976 None:intergenic
TATCATCTTGTGAGGTCAGA+TGG 0.528309 5_2:-8692903 Msa0754950:five_prime_UTR
GTGAAATGTGGTTTCAATTG+CGG 0.529177 5_2:-8693514 Msa0754950:five_prime_UTR
TATTCTTGAAGAGGTAGAGG+AGG 0.530461 5_2:-8692291 Msa0754950:five_prime_UTR
TCAGGTCATTGTGGACATGC+GGG 0.534537 5_2:-8690052 Msa0754950:intron
AACTCAATAACCAGAAAAGC+AGG 0.535534 5_2:-8690194 Msa0754950:CDS
TGTGAGTCAGGAGCTTGAAA+GGG 0.539494 5_2:-8693929 Msa0754950:five_prime_UTR
ACACGTAAGACCTTCCACTT+TGG 0.540143 5_2:+8692540 None:intergenic
GATTTGGGTGGACATGTTCG+TGG 0.540278 5_2:-8691002 Msa0754950:CDS
GCCTCAACCAGTTCAAATCA+TGG 0.540311 5_2:-8692594 Msa0754950:five_prime_UTR
CCTATCACCATTAATTTGCG+TGG 0.542199 5_2:-8689947 Msa0754950:CDS
TACCGGAGATTGTTGAGGTA+GGG 0.544284 5_2:+8694157 None:intergenic
TGAAACAAAAGCAATGAGAG+TGG 0.545369 5_2:-8689232 Msa0754950:CDS
TGGCTTCCCATCTCTTGCCA+TGG 0.545402 5_2:+8690746 None:intergenic
GGCTTTAATATGTCCAGTAT+AGG 0.545948 5_2:+8690684 None:intergenic
TGAAGGTCATGCAAGATGAA+TGG 0.546252 5_2:-8691256 Msa0754950:intron
TGATTTCAGTCGGGATTTGG+TGG 0.546327 5_2:+8694283 None:intergenic
ATTCCAGTGACCCTTGAAGT+TGG 0.548185 5_2:-8689979 Msa0754950:CDS
CCACAATTCCTTCTTCCGAA+GGG 0.550932 5_2:+8689205 None:intergenic
ATTATAGGATATTCTTGAAG+AGG 0.552628 5_2:-8692300 Msa0754950:intron
TGCAACATTTCAGGTCATTG+TGG 0.552950 5_2:-8690061 Msa0754950:intron
AGATCAACGATGAGGATTCG+AGG 0.554305 5_2:+8694195 None:intergenic
TTTGATGAAGAATATTTGGA+AGG 0.555720 5_2:+8690016 None:intergenic
GATAATGAAGACACTGAAGA+AGG 0.559010 5_2:-8692822 Msa0754950:intron
CTGATGCCATGGCAAGAGAT+GGG 0.559494 5_2:-8690752 Msa0754950:CDS
TTCAGGTCATTGTGGACATG+CGG 0.559800 5_2:-8690053 Msa0754950:intron
CACATCATCACCAATATCAC+TGG 0.560057 5_2:+8689389 None:intergenic
AGTGATGAAACAAACGTGGC+CGG 0.560188 5_2:+8694218 None:intergenic
GTTCTGTGATTATGTGTTCG+TGG 0.560393 5_2:+8694484 None:intergenic
CGTCACTCTCTCTATTCCTC+CGG 0.561209 5_2:-8694237 Msa0754950:five_prime_UTR
TCTTACAATAAAAGCTTCGG+TGG 0.561222 5_2:+8694098 None:intergenic
AAAAGCAGGTGGGAGAAAAG+AGG 0.563035 5_2:-8690180 Msa0754950:CDS
AAATTACAACACATCGGCTG+TGG 0.565719 5_2:-8688710 Msa0754950:CDS
GACGACCTGATGTGAAACTC+TGG 0.566044 5_2:+8689899 None:intergenic
GAGACCAGATTATACGTAGC+CGG 0.566434 5_2:+8689316 None:intergenic
GGTCGGCGGTGATTTCAGTC+GGG 0.568350 5_2:+8694274 None:intergenic
TATAGGCTGATCACTTTCAA+GGG 0.569642 5_2:+8690701 None:intergenic
GATATAGTCACCAACTTCAA+GGG 0.570342 5_2:+8689969 None:intergenic
GATGATGATTCCAATTGACC+AGG 0.572392 5_2:-8690469 Msa0754950:intron
GGAGCTTGAAAGGGATCCAC+CGG 0.572541 5_2:-8693920 Msa0754950:five_prime_UTR
TTCTGTTTGGATATTTGCAG+AGG 0.573410 5_2:-8692964 Msa0754950:five_prime_UTR
GCATACCTTTCCTGATGCCA+TGG 0.573742 5_2:-8690763 Msa0754950:CDS
TACCGAGGTTCAGAAGTTTG+AGG 0.573827 5_2:-8690547 Msa0754950:CDS
ATACCGGAGATTGTTGAGGT+AGG 0.576613 5_2:+8694156 None:intergenic
GCCATGATTTGAACTGGTTG+AGG 0.578463 5_2:+8692593 None:intergenic
TATAGAGAATATCGTAGACC+AGG 0.580161 5_2:-8693490 Msa0754950:five_prime_UTR
TTACAAAGGTCATGTCTGGA+TGG 0.580235 5_2:+8690643 None:intergenic
GTGGTTAACGGCGAGGTCGG+CGG 0.582058 5_2:+8694260 None:intergenic
TGGTGGCATGTAAAGATGAA+AGG 0.582112 5_2:-8692196 Msa0754950:CDS
ATGGTAAACGACAATTATAG+AGG 0.582858 5_2:+8690662 None:intergenic
TCTTGCCATGGCATCAGGAA+AGG 0.583375 5_2:+8690758 None:intergenic
ACGGTGGTTAACGGCGAGGT+CGG 0.584337 5_2:+8694257 None:intergenic
CCGATGACGAAGTATATGGT+GGG 0.586824 5_2:-8693877 Msa0754950:five_prime_UTR
GGAAGAAGCACCAAAGTGGA+AGG 0.587130 5_2:-8692550 Msa0754950:five_prime_UTR
AGTTTCTGTATTCTGTCCAA+GGG 0.587257 5_2:+8691127 None:intergenic
GTCCACCCAAATCAGACTGA+GGG 0.588033 5_2:+8691012 None:intergenic
AGCATCTAGAAAGTCTCTAA+GGG 0.590263 5_2:+8688549 None:intergenic
GAAGACGAATAAGGTTGATG+TGG 0.590987 5_2:-8693803 Msa0754950:five_prime_UTR
TTGCTTGCCTCACAACAAAG+TGG 0.595258 5_2:+8688519 None:intergenic
TGCTTGCCTCACAACAAAGT+GGG 0.596550 5_2:+8688520 None:intergenic
GTGTGCCTTGTGAAGAAGAG+TGG 0.600486 5_2:+8694379 None:intergenic
TGAGATTGTGAGGAGACAGT+TGG 0.601412 5_2:-8693740 Msa0754950:five_prime_UTR
TAATATACCGGAGATTGTTG+AGG 0.602651 5_2:+8694152 None:intergenic
AAGGGATCCACCGGATGTGG+TGG 0.603412 5_2:-8693911 Msa0754950:five_prime_UTR
GAAGGTGAAGACACCGGCAA+TGG 0.604564 5_2:-8692227 Msa0754950:CDS
AAATATCCCACTTTGTTGTG+AGG 0.605641 5_2:-8688526 Msa0754950:exon
TCCGATGACGAAGTATATGG+TGG 0.605903 5_2:-8693878 Msa0754950:five_prime_UTR
CCCACCATATACTTCGTCAT+CGG 0.606972 5_2:+8693877 None:intergenic
TTTCTGATCTTAAGACGTTG+AGG 0.607391 5_2:-8693675 Msa0754950:five_prime_UTR
AGTCGTTTGATGAGATTGTG+AGG 0.607565 5_2:-8693750 Msa0754950:five_prime_UTR
ATTATAGGGCCATAATGGAT+GGG 0.608748 5_2:-8688651 Msa0754950:CDS
GAGGAGGAAAGACGAAAGCA+AGG 0.610985 5_2:-8692275 Msa0754950:five_prime_UTR
ACGCATCGCGATTAAACGAA+CGG 0.614460 5_2:+8694070 None:intergenic
TTTGGATACACTCAGAGTGT+CGG 0.621133 5_2:-8692997 Msa0754950:five_prime_UTR
GAAACAAAAGCAATGAGAGT+GGG 0.625806 5_2:-8689231 Msa0754950:CDS
TATAGCAGACGAACTTATGA+CGG 0.628311 5_2:-8693425 Msa0754950:five_prime_UTR
AACGTGTTTATCATCTTGTG+AGG 0.628573 5_2:-8692911 Msa0754950:five_prime_UTR
CGATGACGAAGTATATGGTG+GGG 0.628683 5_2:-8693876 Msa0754950:five_prime_UTR
TGCCTCAAACTTCTGAACCT+CGG 0.633949 5_2:+8690545 None:intergenic
CCCTTCGGAAGAAGGAATTG+TGG 0.634754 5_2:-8689205 Msa0754950:CDS
TGGTAAACGACAATTATAGA+GGG 0.634773 5_2:+8690663 None:intergenic
ACCCCTCAGTCTGATTTGGG+TGG 0.635198 5_2:-8691014 Msa0754950:CDS
AGAGAAGAAGTGTTGGCTGA+AGG 0.637430 5_2:-8692245 Msa0754950:CDS
TCTTGGAAGAAGCACCAAAG+TGG 0.638664 5_2:-8692554 Msa0754950:five_prime_UTR
AAGAAGCCAAAGGATCCTAA+GGG 0.640306 5_2:-8691182 Msa0754950:CDS
TGTTCAGAGTAACAATAAGG+AGG 0.640959 5_2:-8690922 Msa0754950:CDS
CATGCTGAGAGAAGAAGTGT+TGG 0.644882 5_2:-8692252 Msa0754950:CDS
CTAATATCCACCACATCCGG+TGG 0.646959 5_2:+8693904 None:intergenic
ATCAGGTCGTCTATACAACC+AGG 0.647266 5_2:-8689887 Msa0754950:intron
AAGTGGCAAGTGGTAAAACT+GGG 0.647794 5_2:-8690899 Msa0754950:CDS
CAGCACTAGTTTCACCCATG+TGG 0.649096 5_2:+8690853 None:intergenic
CGGAGGAATAGAGAGAGTGA+CGG 0.653257 5_2:+8694238 None:intergenic
TTGTTAAAAGATCAACGATG+AGG 0.653406 5_2:+8694187 None:intergenic
GACCAGATTATACGTAGCCG+GGG 0.655756 5_2:+8689318 None:intergenic
TAGACGATGCAGTTCTTCGG+AGG 0.657142 5_2:-8690785 Msa0754950:CDS
TGATGTGGAGGATTTGACGG+TGG 0.658243 5_2:-8693788 Msa0754950:five_prime_UTR
TGGAGAATCACAGTGAAATG+TGG 0.663645 5_2:-8693526 Msa0754950:five_prime_UTR
AATAAGGAGGAAGTGGCAAG+TGG 0.663909 5_2:-8690909 Msa0754950:CDS
TAATTAGAATCTGTAACACC+AGG 0.663930 5_2:+8688670 None:intergenic
TCAATAACCAGAAAAGCAGG+TGG 0.667123 5_2:-8690191 Msa0754950:CDS
GAGTTTGTGAAACCAAACAC+GGG 0.667217 5_2:-8690818 Msa0754950:CDS
TTTCTATGAAGATTCTACCG+AGG 0.670018 5_2:-8690562 Msa0754950:CDS
AAACCAGAAACCATCGCCTG+AGG 0.670896 5_2:+8694024 None:intergenic
TTGGCTGAAGGTGAAGACAC+CGG 0.674628 5_2:-8692233 Msa0754950:CDS
GGCTGAAAATTACAACACAT+CGG 0.677724 5_2:-8688716 Msa0754950:CDS
AGAGTTTGTGAAACCAAACA+CGG 0.679375 5_2:-8690819 Msa0754950:CDS
ATAGAGAATATCGTAGACCA+GGG 0.683116 5_2:-8693489 Msa0754950:five_prime_UTR
CAATAACCAGAAAAGCAGGT+GGG 0.683805 5_2:-8690190 Msa0754950:CDS
AAGCTAGCTGAAATAATGGG+TGG 0.684063 5_2:-8688589 Msa0754950:CDS
GATGAAACAAACGTGGCCGG+AGG 0.685510 5_2:+8694221 None:intergenic
TGTCCACCCAAATCAGACTG+AGG 0.686132 5_2:+8691011 None:intergenic
ATGCATGTTTGAAAGAGATG+AGG 0.694727 5_2:-8693825 Msa0754950:five_prime_UTR
AGGAATAGAGAGAGTGACGG+TGG 0.698504 5_2:+8694241 None:intergenic
TCCACCCAAATCAGACTGAG+GGG 0.701752 5_2:+8691013 None:intergenic
TTATGACGGATAGCTTATAG+CGG 0.709095 5_2:-8693411 Msa0754950:five_prime_UTR
GAACTTCTAGAAGACAACAA+TGG 0.710472 5_2:-8694465 Msa0754950:five_prime_UTR
GGACAGAATACAGAAACTGG+TGG 0.715782 5_2:-8691122 Msa0754950:CDS
AGTGACGGTGGTTAACGGCG+AGG 0.717877 5_2:+8694253 None:intergenic
CTTCTAGAAGACAACAATGG+CGG 0.720413 5_2:-8694462 Msa0754950:five_prime_UTR
GAATTGTGGAAAGTGACGTG+AGG 0.720586 5_2:-8689191 Msa0754950:intron
GAAAAGGCAAGAGAAAATTG+GGG 0.723707 5_2:-8690980 Msa0754950:CDS
AGTTTGTGAAACCAAACACG+GGG 0.728405 5_2:-8690817 Msa0754950:CDS
GAGGAGTGATGAAACAAACG+TGG 0.753230 5_2:+8694214 None:intergenic
TTTGTGAAACCAAACACGGG+GGG 0.756170 5_2:-8690815 Msa0754950:CDS
GTTTGTGAAACCAAACACGG+GGG 0.775210 5_2:-8690816 Msa0754950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTGAATTTGAAAAATTT+AGG + chr5_2:8688439-8688458 None:intergenic 15.0%
!! TCAAAAACAAAAAGAAAAAA+GGG - chr5_2:8690136-8690155 Msa0754950:intron 15.0%
!! AGCATTTAAAAAAATAAAAG+AGG - chr5_2:8690272-8690291 Msa0754950:intron 15.0%
!!! TAGTTTAATTTGATAAATGT+TGG - chr5_2:8690631-8690650 Msa0754950:CDS 15.0%
!! TTATGTCTTCTTATAAAATA+AGG - chr5_2:8690870-8690889 Msa0754950:CDS 15.0%
!!! TCTTTGAAATATTATAAATC+TGG - chr5_2:8691044-8691063 Msa0754950:CDS 15.0%
!!! CTTTGAAATATTATAAATCT+GGG - chr5_2:8691045-8691064 Msa0754950:CDS 15.0%
!!! TTTGAAATATTATAAATCTG+GGG - chr5_2:8691046-8691065 Msa0754950:CDS 15.0%
!!! GAATTTGAAAAATTTAGGTT+TGG + chr5_2:8688434-8688453 None:intergenic 20.0%
!! AATTCTTACAATAAAAGCTT+CGG + chr5_2:8688895-8688914 None:intergenic 20.0%
!!! TGAATTAGCTTATTGAAAAA+TGG - chr5_2:8689778-8689797 Msa0754950:intron 20.0%
!!! AACTTATAGCTTATTTTTAC+TGG + chr5_2:8689810-8689829 None:intergenic 20.0%
!! CTAACTAAAAAATACATGTT+TGG + chr5_2:8689852-8689871 None:intergenic 20.0%
!! GTAAAAAAACCATGATAAAA+GGG + chr5_2:8689915-8689934 None:intergenic 20.0%
!! AGTAAAAAAACCATGATAAA+AGG + chr5_2:8689916-8689935 None:intergenic 20.0%
!! GTCAAAAACAAAAAGAAAAA+AGG - chr5_2:8690135-8690154 Msa0754950:intron 20.0%
!!! AAAAAATAAAAGAGGCATAA+AGG - chr5_2:8690280-8690299 Msa0754950:intron 20.0%
!!! TATCATCGTTTTATTTGATT+TGG - chr5_2:8690504-8690523 Msa0754950:CDS 20.0%
!!! TTGATAAATGTTGGATATTT+TGG - chr5_2:8690640-8690659 Msa0754950:CDS 20.0%
!!! TGATAAATGTTGGATATTTT+GGG - chr5_2:8690641-8690660 Msa0754950:CDS 20.0%
!!! TAAAAAAAGACAACCTTTTT+TGG + chr5_2:8690853-8690872 None:intergenic 20.0%
!!! TACTTTTTTTGTGATTATGA+TGG - chr5_2:8691605-8691624 Msa0754950:intron 20.0%
!!! CTATTGTTTTTTTATTGTGA+AGG - chr5_2:8691714-8691733 Msa0754950:intron 20.0%
!! TGTAAGATAAAAGTTAGTAT+AGG + chr5_2:8692669-8692688 None:intergenic 20.0%
!! AGTATTTAAATCTGAATCTA+GGG + chr5_2:8692767-8692786 None:intergenic 20.0%
!! TAGTATTTAAATCTGAATCT+AGG + chr5_2:8692768-8692787 None:intergenic 20.0%
!! CAAATTAGTACTAAATATCT+GGG - chr5_2:8693343-8693362 Msa0754950:intron 20.0%
!! AACTTTGATATAATGCTATT+GGG + chr5_2:8693627-8693646 None:intergenic 20.0%
!! TGTTACAGATTCTAATTATA+GGG - chr5_2:8694322-8694341 Msa0754950:five_prime_UTR 20.0%
! TTGGAATTGAAAATTCTTGA+AGG + chr5_2:8688415-8688434 None:intergenic 25.0%
! CATCCATTATTATTCATCAA+TGG - chr5_2:8688470-8688489 Msa0754950:three_prime_UTR 25.0%
! GAACCATTGATGAATAATAA+TGG + chr5_2:8688476-8688495 None:intergenic 25.0%
!!! TTTGAGATGGAAATTGATTT+TGG + chr5_2:8688667-8688686 None:intergenic 25.0%
! TTGATTGAATTTGTAGTGTT+TGG - chr5_2:8689608-8689627 Msa0754950:intron 25.0%
! GTAGTGTTTGGTAAAATTAA+CGG - chr5_2:8689620-8689639 Msa0754950:intron 25.0%
! TTTCTTCAATTAAGAGAACA+AGG - chr5_2:8689702-8689721 Msa0754950:intron 25.0%
! TTCTTCAATTAAGAGAACAA+GGG - chr5_2:8689703-8689722 Msa0754950:intron 25.0%
!!! TTTTTTTACTGATTGTTGTG+TGG - chr5_2:8689926-8689945 Msa0754950:CDS 25.0%
! AACAAAAAGAAAAAAGGGAA+AGG - chr5_2:8690141-8690160 Msa0754950:intron 25.0%
! ACAAAAAGAAAAAAGGGAAA+GGG - chr5_2:8690142-8690161 Msa0754950:intron 25.0%
!! ACTTATCGTTATGTTTTCTT+TGG - chr5_2:8690193-8690212 Msa0754950:CDS 25.0%
!! TTCGTTTGGATTTTCAAAAT+AGG - chr5_2:8690582-8690601 Msa0754950:CDS 25.0%
! TGATTCGATCATATCATTAT+AGG - chr5_2:8690672-8690691 Msa0754950:CDS 25.0%
! ATTATAGGATATTCTTGAAG+AGG - chr5_2:8690687-8690706 Msa0754950:CDS 25.0%
! CTCTAAGTTTATGAAATTTG+TGG - chr5_2:8691286-8691305 Msa0754950:intron 25.0%
! ATTTGTGGATACATATAATC+TGG - chr5_2:8691301-8691320 Msa0754950:intron 25.0%
!! ACTCATTCGTTCAATTTTAT+TGG - chr5_2:8691391-8691410 Msa0754950:intron 25.0%
!!! GTGGACTTTATTTTTTGAAT+CGG + chr5_2:8692118-8692137 None:intergenic 25.0%
! TTCAAAAAATAAAGTCCACA+TGG - chr5_2:8692119-8692138 Msa0754950:intron 25.0%
! TCAAAAAATAAAGTCCACAT+GGG - chr5_2:8692120-8692139 Msa0754950:intron 25.0%
! GAATCAAAAGAAAAACATGA+GGG + chr5_2:8692565-8692584 None:intergenic 25.0%
! AGAATCAAAAGAAAAACATG+AGG + chr5_2:8692566-8692585 None:intergenic 25.0%
!!! TCATGTTTTTCTTTTGATTC+TGG - chr5_2:8692565-8692584 Msa0754950:five_prime_UTR 25.0%
! TTTGATGAAGAATATTTGGA+AGG + chr5_2:8692974-8692993 None:intergenic 25.0%
! TCCAAATATTCTTCATCAAA+AGG - chr5_2:8692974-8692993 Msa0754950:five_prime_UTR 25.0%
! CCAAATATTCTTCATCAAAA+GGG - chr5_2:8692975-8692994 Msa0754950:five_prime_UTR 25.0%
! CCAGATATTTAGTACTAATT+TGG + chr5_2:8693345-8693364 None:intergenic 25.0%
! CCAAATTAGTACTAAATATC+TGG - chr5_2:8693342-8693361 Msa0754950:intron 25.0%
! CAACTTTGATATAATGCTAT+TGG + chr5_2:8693628-8693647 None:intergenic 25.0%
! TGAAATATTTGCTTCACTAA+AGG - chr5_2:8693713-8693732 Msa0754950:five_prime_UTR 25.0%
! ATTGTAATTGCAAGAAACAT+TGG - chr5_2:8693910-8693929 Msa0754950:five_prime_UTR 25.0%
!!! TGCAGGCTTTATATAATTTT+AGG - chr5_2:8694036-8694055 Msa0754950:five_prime_UTR 25.0%
!! TCTGTTCCTAATGTAAATTT+TGG - chr5_2:8694228-8694247 Msa0754950:five_prime_UTR 25.0%
!! CTGTTCCTAATGTAAATTTT+GGG - chr5_2:8694229-8694248 Msa0754950:five_prime_UTR 25.0%
!! TGTTCCTAATGTAAATTTTG+GGG - chr5_2:8694230-8694249 Msa0754950:five_prime_UTR 25.0%
! TTAACCCCAAAATTTACATT+AGG + chr5_2:8694237-8694256 None:intergenic 25.0%
! GTGTTACAGATTCTAATTAT+AGG - chr5_2:8694321-8694340 Msa0754950:five_prime_UTR 25.0%
! TGCATCAATATATCATCATT+GGG - chr5_2:8694553-8694572 Msa0754950:five_prime_UTR 25.0%
! TTGATTTTGGATTTGAGAGT+GGG + chr5_2:8688654-8688673 None:intergenic 30.0%
!! ATTGATTTTGGATTTGAGAG+TGG + chr5_2:8688655-8688674 None:intergenic 30.0%
TTGTTAAAAGATCAACGATG+AGG + chr5_2:8688803-8688822 None:intergenic 30.0%
TGCATTGAGGATTAATATAC+CGG + chr5_2:8688850-8688869 None:intergenic 30.0%
ATCCAATTTGGCATACTTTA+GGG - chr5_2:8689270-8689289 Msa0754950:CDS 30.0%
!!! CTTATCGATGTTTTAACTTG+CGG - chr5_2:8689403-8689422 Msa0754950:intron 30.0%
CTTTGTAGTTCTTTGTATTG+TGG - chr5_2:8689441-8689460 Msa0754950:intron 30.0%
! CTCTGTTTGGTGAAAAATAA+CGG - chr5_2:8689521-8689540 Msa0754950:intron 30.0%
TCTGCTATAAGCTAACTTAT+CGG + chr5_2:8689551-8689570 None:intergenic 30.0%
GAGAAAAATCACAAGCTATA+AGG - chr5_2:8689737-8689756 Msa0754950:intron 30.0%
ATAAGTTCGTGAGAAAATGA+CGG - chr5_2:8689823-8689842 Msa0754950:intron 30.0%
!!! TTGTGTGGTTTTTTACTGAT+AGG - chr5_2:8689941-8689960 Msa0754950:CDS 30.0%
! TTTTACTGATAGGTATGATG+CGG - chr5_2:8689951-8689970 Msa0754950:CDS 30.0%
GGTGACTTACTTGAAATATT+TGG - chr5_2:8689972-8689991 Msa0754950:CDS 30.0%
CAAAAAGAAAAAAGGGAAAG+GGG - chr5_2:8690143-8690162 Msa0754950:intron 30.0%
!!! TTGGTTTTTTAATCTCGCAT+AGG - chr5_2:8690212-8690231 Msa0754950:CDS 30.0%
! ATAAAAGAGGCATAAAGGAA+AGG - chr5_2:8690285-8690304 Msa0754950:intron 30.0%
AAGCATGCAAAGCAAAATTA+AGG + chr5_2:8690353-8690372 None:intergenic 30.0%
TTCAAATCATGGCATAGTAT+TGG - chr5_2:8690404-8690423 Msa0754950:intron 30.0%
!!! TAATGCTTTTCTAGTTCGTT+TGG - chr5_2:8690568-8690587 Msa0754950:CDS 30.0%
!! AGAATTGGTTAGGATTAGTT+TGG + chr5_2:8690986-8691005 None:intergenic 30.0%
! TTTTCAGCATAGAATTGGTT+AGG + chr5_2:8690996-8691015 None:intergenic 30.0%
!! TGAGTTTTTCAGCATAGAAT+TGG + chr5_2:8691001-8691020 None:intergenic 30.0%
TATGGAATATGCATTGTTGA+TGG - chr5_2:8691077-8691096 Msa0754950:CDS 30.0%
! GATGGCAATTTTGGATAATA+AGG - chr5_2:8691095-8691114 Msa0754950:CDS 30.0%
! TCAATTTTATTGGCAGTGAT+TGG - chr5_2:8691401-8691420 Msa0754950:intron 30.0%
AGAAAATTGGGGAATAGAAA+TGG - chr5_2:8692018-8692037 Msa0754950:intron 30.0%
TAGAGCCATCAATAATGATT+GGG + chr5_2:8692044-8692063 None:intergenic 30.0%
TAGTGTTCAGAGTAACAATA+AGG - chr5_2:8692062-8692081 Msa0754950:intron 30.0%
TGGTAAACGACAATTATAGA+GGG + chr5_2:8692327-8692346 None:intergenic 30.0%
ATGGTAAACGACAATTATAG+AGG + chr5_2:8692328-8692347 None:intergenic 30.0%
! TATACCTTCAACCTTTTAGA+GGG + chr5_2:8692399-8692418 None:intergenic 30.0%
CAACTATAGTAAAACAAACC+TGG + chr5_2:8692539-8692558 None:intergenic 30.0%
! TTGTTTTCCTCTTTTCTGAT+TGG - chr5_2:8692689-8692708 Msa0754950:intron 30.0%
!!! TTTTCTGGTTATTGAGTTCT+GGG + chr5_2:8692791-8692810 None:intergenic 30.0%
! TTGCCATGGATTTTATAGTT+TGG - chr5_2:8692899-8692918 Msa0754950:five_prime_UTR 30.0%
! TGCCATGGATTTTATAGTTT+GGG - chr5_2:8692900-8692919 Msa0754950:five_prime_UTR 30.0%
TTCCCAAACTATAAAATCCA+TGG + chr5_2:8692905-8692924 None:intergenic 30.0%
! CCCTTTTGATGAAGAATATT+TGG + chr5_2:8692978-8692997 None:intergenic 30.0%
! CACCGGTATTTTATAATATC+GGG + chr5_2:8693138-8693157 None:intergenic 30.0%
!! GCACCGGTATTTTATAATAT+CGG + chr5_2:8693139-8693158 None:intergenic 30.0%
! TACTGTCTTGTTACTATCAA+TGG - chr5_2:8693236-8693255 Msa0754950:intron 30.0%
ATTTGGACCAAAACAGTAAA+CGG + chr5_2:8693328-8693347 None:intergenic 30.0%
CAAACAAGCTATATCATACA+TGG - chr5_2:8693487-8693506 Msa0754950:five_prime_UTR 30.0%
!!! CTTGATTAGCATTTGTTTTG+TGG - chr5_2:8693529-8693548 Msa0754950:five_prime_UTR 30.0%
!! CAACAAATATTGATTTGTGC+AGG - chr5_2:8694019-8694038 Msa0754950:five_prime_UTR 30.0%
GAAATATTCTTGTTGAGACA+TGG + chr5_2:8694086-8694105 None:intergenic 30.0%
TAATTAGAATCTGTAACACC+AGG + chr5_2:8694320-8694339 None:intergenic 30.0%
TTCTAATTATAGGGCCATAA+TGG - chr5_2:8694331-8694350 Msa0754950:five_prime_UTR 30.0%
AGAAAAGCTAGCTGAAATAA+TGG - chr5_2:8694394-8694413 Msa0754950:five_prime_UTR 30.0%
GAAAAGCTAGCTGAAATAAT+GGG - chr5_2:8694395-8694414 Msa0754950:five_prime_UTR 30.0%
AGACAATTCATTTGTCGAAA+TGG - chr5_2:8694490-8694509 Msa0754950:five_prime_UTR 30.0%
CTGCATCAATATATCATCAT+TGG - chr5_2:8694552-8694571 Msa0754950:five_prime_UTR 30.0%
! GAACTTCTAGAAGACAACAA+TGG - chr5_2:8688522-8688541 Msa0754950:exon 35.0%
!! AGAGGAGATGAGTTTTGATA+AGG + chr5_2:8688577-8688596 None:intergenic 35.0%
TAATATACCGGAGATTGTTG+AGG + chr5_2:8688838-8688857 None:intergenic 35.0%
TCTTACAATAAAAGCTTCGG+TGG + chr5_2:8688892-8688911 None:intergenic 35.0%
GGTTACGGAAGTTACATTTA+TGG - chr5_2:8689018-8689037 Msa0754950:intron 35.0%
CTCACATAAACCTGAAATCT+CGG + chr5_2:8689044-8689063 None:intergenic 35.0%
!! ATTTCAGGTTTATGTGAGTC+AGG - chr5_2:8689046-8689065 Msa0754950:intron 35.0%
GAAAGCGATTGTTGAAGTTA+TGG - chr5_2:8689139-8689158 Msa0754950:intron 35.0%
ATGCATGTTTGAAAGAGATG+AGG - chr5_2:8689162-8689181 Msa0754950:intron 35.0%
GATCCAATTTGGCATACTTT+AGG - chr5_2:8689269-8689288 Msa0754950:CDS 35.0%
TTCCCTAAAGTATGCCAAAT+TGG + chr5_2:8689275-8689294 None:intergenic 35.0%
TTTCTGATCTTAAGACGTTG+AGG - chr5_2:8689312-8689331 Msa0754950:CDS 35.0%
AGTTGTTGGATTATCTAGTC+AGG - chr5_2:8689336-8689355 Msa0754950:CDS 35.0%
GTGAAATGTGGTTTCAATTG+CGG - chr5_2:8689473-8689492 Msa0754950:intron 35.0%
TATAGAGAATATCGTAGACC+AGG - chr5_2:8689497-8689516 Msa0754950:intron 35.0%
ATAGAGAATATCGTAGACCA+GGG - chr5_2:8689498-8689517 Msa0754950:intron 35.0%
TATAGCAGACGAACTTATGA+CGG - chr5_2:8689562-8689581 Msa0754950:intron 35.0%
!! TTATGACGGATAGCTTATAG+CGG - chr5_2:8689576-8689595 Msa0754950:intron 35.0%
TTCTGTTTGGATATTTGCAG+AGG - chr5_2:8690023-8690042 Msa0754950:CDS 35.0%
AACGTGTTTATCATCTTGTG+AGG - chr5_2:8690076-8690095 Msa0754950:intron 35.0%
GATAATGAAGACACTGAAGA+AGG - chr5_2:8690165-8690184 Msa0754950:CDS 35.0%
TACTATGCCATGATTTGAAC+TGG + chr5_2:8690403-8690422 None:intergenic 35.0%
! CATAGTATTGGAAGAAGTCT+TGG - chr5_2:8690416-8690435 Msa0754950:intron 35.0%
! AGTTCCTATTCTAGAAAGTC+TGG - chr5_2:8690479-8690498 Msa0754950:CDS 35.0%
!! TAAGCCAGACTTTCTAGAAT+AGG + chr5_2:8690486-8690505 None:intergenic 35.0%
ATGCAAGACAGACACTAATT+TGG - chr5_2:8690528-8690547 Msa0754950:CDS 35.0%
!! TGCACTGATTAAATCAAGTC+CGG + chr5_2:8690914-8690933 None:intergenic 35.0%
! GTGCAGTAGTCAATTTTGTA+TGG - chr5_2:8690929-8690948 Msa0754950:CDS 35.0%
! AAATCTGGGGCAAGATATTA+TGG - chr5_2:8691059-8691078 Msa0754950:CDS 35.0%
!!! TGCATTGTTGATGGCAATTT+TGG - chr5_2:8691086-8691105 Msa0754950:CDS 35.0%
! GTATTTTTCCTGTGAGCTTT+TGG - chr5_2:8691166-8691185 Msa0754950:CDS 35.0%
CTGATATGTGATGATTACCA+TGG - chr5_2:8691219-8691238 Msa0754950:CDS 35.0%
ACCATGGATTCTATTCAAAG+TGG - chr5_2:8691235-8691254 Msa0754950:CDS 35.0%
TCCACTTTGAATAGAATCCA+TGG + chr5_2:8691239-8691258 None:intergenic 35.0%
AGCAGTGATTGACTGAATAT+TGG - chr5_2:8691366-8691385 Msa0754950:intron 35.0%
TATCAACCAGCAAAAACTCA+AGG + chr5_2:8691650-8691669 None:intergenic 35.0%
GCATAAGAAAAAGAAGCCAA+AGG - chr5_2:8691795-8691814 Msa0754950:intron 35.0%
TTAAGAATCCCAAAACCCTT+AGG + chr5_2:8691823-8691842 None:intergenic 35.0%
!!! AAGGGTTTTGGGATTCTTAA+TGG - chr5_2:8691823-8691842 Msa0754950:intron 35.0%
AGTTTCTGTATTCTGTCCAA+GGG + chr5_2:8691863-8691882 None:intergenic 35.0%
TGGAAAAGGCAAGAGAAAAT+TGG - chr5_2:8692005-8692024 Msa0754950:intron 35.0%
GGAAAAGGCAAGAGAAAATT+GGG - chr5_2:8692006-8692025 Msa0754950:intron 35.0%
GAAAAGGCAAGAGAAAATTG+GGG - chr5_2:8692007-8692026 Msa0754950:intron 35.0%
AATGGCCCAATCATTATTGA+TGG - chr5_2:8692036-8692055 Msa0754950:intron 35.0%
CTAGAGCCATCAATAATGAT+TGG + chr5_2:8692045-8692064 None:intergenic 35.0%
TGTTCAGAGTAACAATAAGG+AGG - chr5_2:8692065-8692084 Msa0754950:intron 35.0%
AGAGTTTGTGAAACCAAACA+CGG - chr5_2:8692168-8692187 Msa0754950:CDS 35.0%
! TAAAAATGTACTGGTGGTAG+TGG + chr5_2:8692264-8692283 None:intergenic 35.0%
! TCAAGGGCATAAAAATGTAC+TGG + chr5_2:8692273-8692292 None:intergenic 35.0%
TATAGGCTGATCACTTTCAA+GGG + chr5_2:8692289-8692308 None:intergenic 35.0%
! GGCTTTAATATGTCCAGTAT+AGG + chr5_2:8692306-8692325 None:intergenic 35.0%
GACTTCGATTTCTCTTACAA+AGG + chr5_2:8692361-8692380 None:intergenic 35.0%
! GTATACCTTCAACCTTTTAG+AGG + chr5_2:8692400-8692419 None:intergenic 35.0%
TTTCTATGAAGATTCTACCG+AGG - chr5_2:8692425-8692444 Msa0754950:intron 35.0%
GTAAAACAAACCTGGTCAAT+TGG + chr5_2:8692531-8692550 None:intergenic 35.0%
CCATTATCCACATTCCTATA+CGG + chr5_2:8692629-8692648 None:intergenic 35.0%
CGTATAGGAATGTGGATAAT+GGG - chr5_2:8692627-8692646 Msa0754950:intron 35.0%
!!! CTTTTCTGGTTATTGAGTTC+TGG + chr5_2:8692792-8692811 None:intergenic 35.0%
AACTCAATAACCAGAAAAGC+AGG - chr5_2:8692793-8692812 Msa0754950:intron 35.0%
!! AGAGGTTGATAAAGAAATGC+AGG - chr5_2:8692825-8692844 Msa0754950:five_prime_UTR 35.0%
AAATCCATGGCAAGTATATG+AGG + chr5_2:8692892-8692911 None:intergenic 35.0%
TTTGGGAATTGCAACATTTC+AGG - chr5_2:8692917-8692936 Msa0754950:five_prime_UTR 35.0%
GATATAGTCACCAACTTCAA+GGG + chr5_2:8693021-8693040 None:intergenic 35.0%
TTCCTTTCCACGCAAATTAA+TGG + chr5_2:8693050-8693069 None:intergenic 35.0%
GGCCCGATATTATAAAATAC+CGG - chr5_2:8693133-8693152 Msa0754950:intron 35.0%
!! TCAATGGCTTGTTCATATTC+TGG - chr5_2:8693252-8693271 Msa0754950:intron 35.0%
!! CAATGGCTTGTTCATATTCT+GGG - chr5_2:8693253-8693272 Msa0754950:intron 35.0%
!! AATGGCTTGTTCATATTCTG+GGG - chr5_2:8693254-8693273 Msa0754950:intron 35.0%
CGGCAAGCATTCTTATAAAT+GGG + chr5_2:8693308-8693327 None:intergenic 35.0%
ACGGCAAGCATTCTTATAAA+TGG + chr5_2:8693309-8693328 None:intergenic 35.0%
GAATGACATTTGATCTGTCA+TGG - chr5_2:8693558-8693577 Msa0754950:five_prime_UTR 35.0%
!! CTCATTGCTTTTGTTTCATC+TGG + chr5_2:8693753-8693772 None:intergenic 35.0%
TGAAACAAAAGCAATGAGAG+TGG - chr5_2:8693755-8693774 Msa0754950:five_prime_UTR 35.0%
GAAACAAAAGCAATGAGAGT+GGG - chr5_2:8693756-8693775 Msa0754950:five_prime_UTR 35.0%
!! TTCACTTTTCATTTCACCCT+TGG + chr5_2:8693869-8693888 None:intergenic 35.0%
GTAATTGCAAGAAACATTGG+TGG - chr5_2:8693913-8693932 Msa0754950:five_prime_UTR 35.0%
!! CCAACATGGCTTTAAAACTA+TGG + chr5_2:8693949-8693968 None:intergenic 35.0%
!!! CCATAGTTTTAAAGCCATGT+TGG - chr5_2:8693946-8693965 Msa0754950:five_prime_UTR 35.0%
TGAAACCTGTGCATATTGAT+AGG + chr5_2:8694113-8694132 None:intergenic 35.0%
ACATTTAAACTGTAGAGCTC+AGG - chr5_2:8694148-8694167 Msa0754950:five_prime_UTR 35.0%
GGCTGAAAATTACAACACAT+CGG - chr5_2:8694271-8694290 Msa0754950:five_prime_UTR 35.0%
! AATTATAGGGCCATAATGGA+TGG - chr5_2:8694335-8694354 Msa0754950:five_prime_UTR 35.0%
!! ATTATAGGGCCATAATGGAT+GGG - chr5_2:8694336-8694355 Msa0754950:five_prime_UTR 35.0%
! ACTTTTACACCCATCCATTA+TGG + chr5_2:8694348-8694367 None:intergenic 35.0%
AATGGATGGGTGTAAAAGTT+TGG - chr5_2:8694349-8694368 Msa0754950:five_prime_UTR 35.0%
!!! ATTTCAGCTAGCTTTTCTAC+TGG + chr5_2:8694392-8694411 None:intergenic 35.0%
AGCATCTAGAAAGTCTCTAA+GGG + chr5_2:8694441-8694460 None:intergenic 35.0%
TAGCATCTAGAAAGTCTCTA+AGG + chr5_2:8694442-8694461 None:intergenic 35.0%
! AAATATCCCACTTTGTTGTG+AGG - chr5_2:8694461-8694480 Msa0754950:five_prime_UTR 35.0%
GTTCTGTGATTATGTGTTCG+TGG + chr5_2:8688506-8688525 None:intergenic 40.0%
! CTTCTAGAAGACAACAATGG+CGG - chr5_2:8688525-8688544 Msa0754950:exon 40.0%
CGGAAATTGAATGTGCATTG+AGG + chr5_2:8688863-8688882 None:intergenic 40.0%
AAAAGCTTCGGTGGAAGTTT+CGG + chr5_2:8688883-8688902 None:intergenic 40.0%
! AGAGGACGATGAAGTGTTTA+GGG - chr5_2:8688997-8689016 Msa0754950:intron 40.0%
! CGATGAAGTGTTTAGGGTTA+CGG - chr5_2:8689003-8689022 Msa0754950:intron 40.0%
ACATTTATGGCCGAGATTTC+AGG - chr5_2:8689031-8689050 Msa0754950:intron 40.0%
AGAGATGAGGAAGACGAATA+AGG - chr5_2:8689175-8689194 Msa0754950:intron 40.0%
!! GAAGACGAATAAGGTTGATG+TGG - chr5_2:8689184-8689203 Msa0754950:intron 40.0%
AGTCGTTTGATGAGATTGTG+AGG - chr5_2:8689237-8689256 Msa0754950:CDS 40.0%
TAAGACGTTGAGGAAGTTGT+TGG - chr5_2:8689322-8689341 Msa0754950:CDS 40.0%
TGGAGAATCACAGTGAAATG+TGG - chr5_2:8689461-8689480 Msa0754950:intron 40.0%
TTTGGATACACTCAGAGTGT+CGG - chr5_2:8689990-8690009 Msa0754950:CDS 40.0%
TATCATCTTGTGAGGTCAGA+TGG - chr5_2:8690084-8690103 Msa0754950:intron 40.0%
! TTTTGCTTTGCATGCTTGTG+TGG - chr5_2:8690356-8690375 Msa0754950:intron 40.0%
CAAAATAGGATGACCTGAAG+CGG - chr5_2:8690596-8690615 Msa0754950:CDS 40.0%
AAAATAGGATGACCTGAAGC+GGG - chr5_2:8690597-8690616 Msa0754950:CDS 40.0%
! ATTTTTCCATAACCCGCTTC+AGG + chr5_2:8690612-8690631 None:intergenic 40.0%
GGATATTCTTGAAGAGGTAG+AGG - chr5_2:8690693-8690712 Msa0754950:CDS 40.0%
TATTCTTGAAGAGGTAGAGG+AGG - chr5_2:8690696-8690715 Msa0754950:CDS 40.0%
TGGTGGCATGTAAAGATGAA+AGG - chr5_2:8690791-8690810 Msa0754950:CDS 40.0%
!!! GACAACCTTTTTTGGACTGT+TGG + chr5_2:8690845-8690864 None:intergenic 40.0%
GTGTGATCTGAGTGTAATTC+CGG - chr5_2:8690892-8690911 Msa0754950:CDS 40.0%
AAACGATACCAAAAGCTCAC+AGG + chr5_2:8691177-8691196 None:intergenic 40.0%
TGACTGTAGTCTGTAGCAAA+AGG - chr5_2:8691438-8691457 Msa0754950:intron 40.0%
! TGATGGAAGTGTGCTATTCT+TGG - chr5_2:8691622-8691641 Msa0754950:intron 40.0%
! TTGGTTCCTTGAGTTTTTGC+TGG - chr5_2:8691641-8691660 Msa0754950:intron 40.0%
TGAAGGTCATGCAAGATGAA+TGG - chr5_2:8691731-8691750 Msa0754950:intron 40.0%
AAAGAAGCCAAAGGATCCTA+AGG - chr5_2:8691804-8691823 Msa0754950:intron 40.0%
AAGAAGCCAAAGGATCCTAA+GGG - chr5_2:8691805-8691824 Msa0754950:intron 40.0%
! CAAAGGATCCTAAGGGTTTT+GGG - chr5_2:8691812-8691831 Msa0754950:intron 40.0%
GTATTCTGTCCAAGGGATAT+GGG + chr5_2:8691856-8691875 None:intergenic 40.0%
TGTATTCTGTCCAAGGGATA+TGG + chr5_2:8691857-8691876 None:intergenic 40.0%
CAGTTTCTGTATTCTGTCCA+AGG + chr5_2:8691864-8691883 None:intergenic 40.0%
CTTGGACAGAATACAGAAAC+TGG - chr5_2:8691862-8691881 Msa0754950:intron 40.0%
GAGTAACAATAAGGAGGAAG+TGG - chr5_2:8692071-8692090 Msa0754950:intron 40.0%
AAGTGGCAAGTGGTAAAACT+GGG - chr5_2:8692088-8692107 Msa0754950:intron 40.0%
GAGTTTGTGAAACCAAACAC+GGG - chr5_2:8692169-8692188 Msa0754950:CDS 40.0%
AGTTTGTGAAACCAAACACG+GGG - chr5_2:8692170-8692189 Msa0754950:CDS 40.0%
AGGGCATAAAAATGTACTGG+TGG + chr5_2:8692270-8692289 None:intergenic 40.0%
GTATAGGCTGATCACTTTCA+AGG + chr5_2:8692290-8692309 None:intergenic 40.0%
TGAAAGTGATCAGCCTATAC+TGG - chr5_2:8692290-8692309 Msa0754950:five_prime_UTR 40.0%
TTACAAAGGTCATGTCTGGA+TGG + chr5_2:8692347-8692366 None:intergenic 40.0%
TCTCTTACAAAGGTCATGTC+TGG + chr5_2:8692351-8692370 None:intergenic 40.0%
! GAATCCCTCTAAAAGGTTGA+AGG - chr5_2:8692392-8692411 Msa0754950:intron 40.0%
GCAAGTATACGTAGAGAGAA+TGG - chr5_2:8692462-8692481 Msa0754950:intron 40.0%
GATGATGATTCCAATTGACC+AGG - chr5_2:8692518-8692537 Msa0754950:intron 40.0%
! TTTGATTCTGGTTGCTGCTT+CGG - chr5_2:8692577-8692596 Msa0754950:five_prime_UTR 40.0%
TATCCACATTCCTATACGGA+AGG + chr5_2:8692625-8692644 None:intergenic 40.0%
CCGTATAGGAATGTGGATAA+TGG - chr5_2:8692626-8692645 Msa0754950:intron 40.0%
!! GAAAGCACCAATCAGAAAAG+AGG + chr5_2:8692699-8692718 None:intergenic 40.0%
TCAATAACCAGAAAAGCAGG+TGG - chr5_2:8692796-8692815 Msa0754950:intron 40.0%
CAATAACCAGAAAAGCAGGT+GGG - chr5_2:8692797-8692816 Msa0754950:intron 40.0%
TATGCCTCATATACTTGCCA+TGG - chr5_2:8692885-8692904 Msa0754950:five_prime_UTR 40.0%
! TGCAACATTTCAGGTCATTG+TGG - chr5_2:8692926-8692945 Msa0754950:five_prime_UTR 40.0%
GGATATAGTCACCAACTTCA+AGG + chr5_2:8693022-8693041 None:intergenic 40.0%
CCACGCAAATTAATGGTGAT+AGG + chr5_2:8693043-8693062 None:intergenic 40.0%
!! CCTATCACCATTAATTTGCG+TGG - chr5_2:8693040-8693059 Msa0754950:intron 40.0%
!! CACCATTAATTTGCGTGGAA+AGG - chr5_2:8693045-8693064 Msa0754950:intron 40.0%
!! CGTGGAAAGGAAAAGTATTC+AGG - chr5_2:8693058-8693077 Msa0754950:intron 40.0%
ATACAACCAGGTGGAAACAA+TGG - chr5_2:8693112-8693131 Msa0754950:intron 40.0%
! GAAAACTCAATCAAGAGCAC+CGG + chr5_2:8693155-8693174 None:intergenic 40.0%
! GCTCTTGATTGAGTTTTCAC+AGG - chr5_2:8693157-8693176 Msa0754950:intron 40.0%
GGATAAGAGCTTCTCATTTC+AGG - chr5_2:8693178-8693197 Msa0754950:intron 40.0%
!! ATGGCTTGTTCATATTCTGG+GGG - chr5_2:8693255-8693274 Msa0754950:intron 40.0%
!! ATGCTTGCCGTTTACTGTTT+TGG - chr5_2:8693318-8693337 Msa0754950:intron 40.0%
AGTACTAAATATCTGGGCAC+TGG - chr5_2:8693349-8693368 Msa0754950:intron 40.0%
GTACTAAATATCTGGGCACT+GGG - chr5_2:8693350-8693369 Msa0754950:intron 40.0%
CACATCATCACCAATATCAC+TGG + chr5_2:8693601-8693620 None:intergenic 40.0%
! TACTTGCTCTACATTTTCCC+CGG - chr5_2:8693652-8693671 Msa0754950:five_prime_UTR 40.0%
TTTCCATGCTCGTGTGATAT+AGG - chr5_2:8693980-8693999 Msa0754950:five_prime_UTR 40.0%
! AAATTACAACACATCGGCTG+TGG - chr5_2:8694277-8694296 Msa0754950:five_prime_UTR 40.0%
! AAGCTAGCTGAAATAATGGG+TGG - chr5_2:8694398-8694417 Msa0754950:five_prime_UTR 40.0%
GGACTCACAATTCTCTCATC+AGG - chr5_2:8688546-8688565 Msa0754950:CDS 45.0%
AGAGTGGAGAAGAAGAAGAG+AGG + chr5_2:8688595-8688614 None:intergenic 45.0%
CTTCTCCACTCTTCTTCACA+AGG - chr5_2:8688603-8688622 Msa0754950:CDS 45.0%
TTGGATTTGAGAGTGGGAGA+AGG + chr5_2:8688648-8688667 None:intergenic 45.0%
!!! TTGGTGGTTTTGGGGGTTTA+GGG + chr5_2:8688691-8688710 None:intergenic 45.0%
!!! TTTGGTGGTTTTGGGGGTTT+AGG + chr5_2:8688692-8688711 None:intergenic 45.0%
!!! AGTCGGGATTTGGTGGTTTT+GGG + chr5_2:8688700-8688719 None:intergenic 45.0%
TGATTTCAGTCGGGATTTGG+TGG + chr5_2:8688707-8688726 None:intergenic 45.0%
AGTGATGAAACAAACGTGGC+CGG + chr5_2:8688772-8688791 None:intergenic 45.0%
GAGGAGTGATGAAACAAACG+TGG + chr5_2:8688776-8688795 None:intergenic 45.0%
AGATCAACGATGAGGATTCG+AGG + chr5_2:8688795-8688814 None:intergenic 45.0%
TACCGGAGATTGTTGAGGTA+GGG + chr5_2:8688833-8688852 None:intergenic 45.0%
ATACCGGAGATTGTTGAGGT+AGG + chr5_2:8688834-8688853 None:intergenic 45.0%
ACGCATCGCGATTAAACGAA+CGG + chr5_2:8688920-8688939 None:intergenic 45.0%
! AGCATTTTCTGATCGTCCTC+AGG - chr5_2:8688947-8688966 Msa0754950:intron 45.0%
!!! GATGGTTTCTGGTTTTGCGA+AGG - chr5_2:8688971-8688990 Msa0754950:intron 45.0%
! GAGAGGACGATGAAGTGTTT+AGG - chr5_2:8688996-8689015 Msa0754950:intron 45.0%
ATGTGAGTCAGGAGCTTGAA+AGG - chr5_2:8689057-8689076 Msa0754950:intron 45.0%
TGTGAGTCAGGAGCTTGAAA+GGG - chr5_2:8689058-8689077 Msa0754950:intron 45.0%
!! ACCGGATGTGGTGGATATTA+GGG - chr5_2:8689085-8689104 Msa0754950:intron 45.0%
ACCCTAATATCCACCACATC+CGG + chr5_2:8689089-8689108 None:intergenic 45.0%
GGTTCCGATGACGAAGTATA+TGG - chr5_2:8689106-8689125 Msa0754950:intron 45.0%
TCCGATGACGAAGTATATGG+TGG - chr5_2:8689109-8689128 Msa0754950:intron 45.0%
CCCACCATATACTTCGTCAT+CGG + chr5_2:8689113-8689132 None:intergenic 45.0%
CCGATGACGAAGTATATGGT+GGG - chr5_2:8689110-8689129 Msa0754950:intron 45.0%
CGATGACGAAGTATATGGTG+GGG - chr5_2:8689111-8689130 Msa0754950:intron 45.0%
!! GACGAATAAGGTTGATGTGG+AGG - chr5_2:8689187-8689206 Msa0754950:intron 45.0%
! GGTTGATGTGGAGGATTTGA+CGG - chr5_2:8689196-8689215 Msa0754950:CDS 45.0%
AGGATTTGACGGTGGAGAAT+GGG - chr5_2:8689207-8689226 Msa0754950:CDS 45.0%
TGAGATTGTGAGGAGACAGT+TGG - chr5_2:8689247-8689266 Msa0754950:CDS 45.0%
GGAGACAGTTGGATCCAATT+TGG - chr5_2:8689258-8689277 Msa0754950:CDS 45.0%
! TTTTTCACCAAACAGAGCCC+TGG + chr5_2:8689518-8689537 None:intergenic 45.0%
! AGCTGCAGACCCTTTTATCA+TGG - chr5_2:8689903-8689922 Msa0754950:CDS 45.0%
! CGGAGAGTTTTCGTTCTGTT+TGG - chr5_2:8690010-8690029 Msa0754950:CDS 45.0%
! CTCGCATAGGCTGTGATTTT+CGG - chr5_2:8690225-8690244 Msa0754950:CDS 45.0%
AACAAATGCAGTCCACAGCT+TGG + chr5_2:8690323-8690342 None:intergenic 45.0%
GCCTCAACCAGTTCAAATCA+TGG - chr5_2:8690393-8690412 Msa0754950:intron 45.0%
GCCATGATTTGAACTGGTTG+AGG + chr5_2:8690397-8690416 None:intergenic 45.0%
!! TCTTGGAAGAAGCACCAAAG+TGG - chr5_2:8690433-8690452 Msa0754950:intron 45.0%
ACACGTAAGACCTTCCACTT+TGG + chr5_2:8690450-8690469 None:intergenic 45.0%
! CATGCTGAGAGAAGAAGTGT+TGG - chr5_2:8690735-8690754 Msa0754950:CDS 45.0%
!! AGAGAAGAAGTGTTGGCTGA+AGG - chr5_2:8690742-8690761 Msa0754950:CDS 45.0%
CACCAATACAATGCCATTGC+CGG + chr5_2:8690776-8690795 None:intergenic 45.0%
CATCGCCAACAGTCCAAAAA+AGG - chr5_2:8690837-8690856 Msa0754950:CDS 45.0%
CAGTCAATCACTGCTACAGA+TGG + chr5_2:8691361-8691380 None:intergenic 45.0%
CCAAAACCCTTAGGATCCTT+TGG + chr5_2:8691814-8691833 None:intergenic 45.0%
! CCAAAGGATCCTAAGGGTTT+TGG - chr5_2:8691811-8691830 Msa0754950:intron 45.0%
GGACAGAATACAGAAACTGG+TGG - chr5_2:8691865-8691884 Msa0754950:intron 45.0%
AACTGGTGGCATCAATAAGC+AGG - chr5_2:8691879-8691898 Msa0754950:intron 45.0%
AGATACCCCTCAGTCTGATT+TGG - chr5_2:8691969-8691988 Msa0754950:intron 45.0%
GATACCCCTCAGTCTGATTT+GGG - chr5_2:8691970-8691989 Msa0754950:intron 45.0%
AATAAGGAGGAAGTGGCAAG+TGG - chr5_2:8692078-8692097 Msa0754950:intron 45.0%
GAAGTGGCAAGTGGTAAAAC+TGG - chr5_2:8692087-8692106 Msa0754950:intron 45.0%
GTTTGTGAAACCAAACACGG+GGG - chr5_2:8692171-8692190 Msa0754950:CDS 45.0%
TTTGTGAAACCAAACACGGG+GGG - chr5_2:8692172-8692191 Msa0754950:CDS 45.0%
CTGTAGACGATGCAGTTCTT+CGG - chr5_2:8692199-8692218 Msa0754950:CDS 45.0%
TACCGAGGTTCAGAAGTTTG+AGG - chr5_2:8692440-8692459 Msa0754950:intron 45.0%
TGCCTCAAACTTCTGAACCT+CGG + chr5_2:8692445-8692464 None:intergenic 45.0%
!! TCGGTCCATTGTTCTGGAAA+TGG - chr5_2:8692596-8692615 Msa0754950:five_prime_UTR 45.0%
!! AGGAATGTGGATAATGGGCA+TGG - chr5_2:8692632-8692651 Msa0754950:intron 45.0%
! GTCCTGCTGTTTATCAGAGT+GGG - chr5_2:8692719-8692738 Msa0754950:intron 45.0%
TATCAGAGTGGGCATGGTTT+AGG - chr5_2:8692730-8692749 Msa0754950:intron 45.0%
!! TTTTCTCCCACCTGCTTTTC+TGG + chr5_2:8692806-8692825 None:intergenic 45.0%
AAAAGCAGGTGGGAGAAAAG+AGG - chr5_2:8692807-8692826 Msa0754950:intron 45.0%
TTCAGGTCATTGTGGACATG+CGG - chr5_2:8692934-8692953 Msa0754950:five_prime_UTR 45.0%
ATTCCAGTGACCCTTGAAGT+TGG - chr5_2:8693008-8693027 Msa0754950:five_prime_UTR 45.0%
CTCTTCCAGAGTTTCACATC+AGG - chr5_2:8693083-8693102 Msa0754950:intron 45.0%
ATCAGGTCGTCTATACAACC+AGG - chr5_2:8693100-8693119 Msa0754950:intron 45.0%
! CTTGTTCATATTCTGGGGGT+GGG - chr5_2:8693259-8693278 Msa0754950:intron 45.0%
TACCAGTCTGCCAGTGATAT+TGG - chr5_2:8693588-8693607 Msa0754950:five_prime_UTR 45.0%
AGACCAGATTATACGTAGCC+GGG + chr5_2:8693673-8693692 None:intergenic 45.0%
GAGACCAGATTATACGTAGC+CGG + chr5_2:8693674-8693693 None:intergenic 45.0%
CCACAATTCCTTCTTCCGAA+GGG + chr5_2:8693785-8693804 None:intergenic 45.0%
TCCACAATTCCTTCTTCCGA+AGG + chr5_2:8693786-8693805 None:intergenic 45.0%
GAATTGTGGAAAGTGACGTG+AGG - chr5_2:8693796-8693815 Msa0754950:five_prime_UTR 45.0%
AAAGTAGCTTCATGCTGCCA+AGG - chr5_2:8693849-8693868 Msa0754950:five_prime_UTR 45.0%
AAGTAGCTTCATGCTGCCAA+GGG - chr5_2:8693850-8693869 Msa0754950:five_prime_UTR 45.0%
AAACAGGAGATGCACCAACA+TGG + chr5_2:8693963-8693982 None:intergenic 45.0%
TATCACACGAGCATGGAAAC+AGG + chr5_2:8693979-8693998 None:intergenic 45.0%
AAGCCTATATCACACGAGCA+TGG + chr5_2:8693986-8694005 None:intergenic 45.0%
CCTGTGCATATTGATAGGCA+AGG + chr5_2:8694108-8694127 None:intergenic 45.0%
CCTTGCCTATCAATATGCAC+AGG - chr5_2:8694105-8694124 Msa0754950:five_prime_UTR 45.0%
AACTGTAGAGCTCAGGATGT+TGG - chr5_2:8694155-8694174 Msa0754950:five_prime_UTR 45.0%
GGGTTAATGCTGTGATCACA+GGG - chr5_2:8694250-8694269 Msa0754950:five_prime_UTR 45.0%
!! GAGTTTCTAAGACGACTTCC+TGG - chr5_2:8694299-8694318 Msa0754950:five_prime_UTR 45.0%
TGCTTGCCTCACAACAAAGT+GGG + chr5_2:8694470-8694489 None:intergenic 45.0%
TTGCTTGCCTCACAACAAAG+TGG + chr5_2:8694471-8694490 None:intergenic 45.0%
GTGTGCCTTGTGAAGAAGAG+TGG + chr5_2:8688611-8688630 None:intergenic 50.0%
!!! GGGGGTTTAGGGTTTTGAGA+TGG + chr5_2:8688680-8688699 None:intergenic 50.0%
!!! TCGGGATTTGGTGGTTTTGG+GGG + chr5_2:8688698-8688717 None:intergenic 50.0%
!!! GTCGGGATTTGGTGGTTTTG+GGG + chr5_2:8688699-8688718 None:intergenic 50.0%
!!! CAGTCGGGATTTGGTGGTTT+TGG + chr5_2:8688701-8688720 None:intergenic 50.0%
CGGTGATTTCAGTCGGGATT+TGG + chr5_2:8688710-8688729 None:intergenic 50.0%
GAGAGAGTGACGGTGGTTAA+CGG + chr5_2:8688742-8688761 None:intergenic 50.0%
AGGAATAGAGAGAGTGACGG+TGG + chr5_2:8688749-8688768 None:intergenic 50.0%
CGGAGGAATAGAGAGAGTGA+CGG + chr5_2:8688752-8688771 None:intergenic 50.0%
CGTCACTCTCTCTATTCCTC+CGG - chr5_2:8688750-8688769 Msa0754950:intron 50.0%
CTCCCTACCTCAACAATCTC+CGG - chr5_2:8688828-8688847 Msa0754950:intron 50.0%
AAACCAGAAACCATCGCCTG+AGG + chr5_2:8688966-8688985 None:intergenic 50.0%
CTAATATCCACCACATCCGG+TGG + chr5_2:8689086-8689105 None:intergenic 50.0%
!! CACCGGATGTGGTGGATATT+AGG - chr5_2:8689084-8689103 Msa0754950:intron 50.0%
TGATGTGGAGGATTTGACGG+TGG - chr5_2:8689199-8689218 Msa0754950:CDS 50.0%
GAGGATTTGACGGTGGAGAA+TGG - chr5_2:8689206-8689225 Msa0754950:CDS 50.0%
!! GGAAGAAGCACCAAAGTGGA+AGG - chr5_2:8690437-8690456 Msa0754950:intron 50.0%
GAGGAGGAAAGACGAAAGCA+AGG - chr5_2:8690712-8690731 Msa0754950:CDS 50.0%
TTGGCTGAAGGTGAAGACAC+CGG - chr5_2:8690754-8690773 Msa0754950:CDS 50.0%
CACCGGCAATGGCATTGTAT+TGG - chr5_2:8690771-8690790 Msa0754950:CDS 50.0%
CGGCAATGGCATTGTATTGG+TGG - chr5_2:8690774-8690793 Msa0754950:CDS 50.0%
TCCACCCAAATCAGACTGAG+GGG + chr5_2:8691977-8691996 None:intergenic 50.0%
GTCCACCCAAATCAGACTGA+GGG + chr5_2:8691978-8691997 None:intergenic 50.0%
TGTCCACCCAAATCAGACTG+AGG + chr5_2:8691979-8691998 None:intergenic 50.0%
GATTTGGGTGGACATGTTCG+TGG - chr5_2:8691985-8692004 Msa0754950:intron 50.0%
GGTGGACATGTTCGTGGAAA+AGG - chr5_2:8691991-8692010 Msa0754950:intron 50.0%
! CAGCACTAGTTTCACCCATG+TGG + chr5_2:8692137-8692156 None:intergenic 50.0%
TACAGATATCCCCCCGTGTT+TGG + chr5_2:8692184-8692203 None:intergenic 50.0%
TAGACGATGCAGTTCTTCGG+AGG - chr5_2:8692202-8692221 Msa0754950:CDS 50.0%
GCATACCTTTCCTGATGCCA+TGG - chr5_2:8692224-8692243 Msa0754950:CDS 50.0%
TCTTGCCATGGCATCAGGAA+AGG + chr5_2:8692232-8692251 None:intergenic 50.0%
CTGATGCCATGGCAAGAGAT+GGG - chr5_2:8692235-8692254 Msa0754950:CDS 50.0%
GGCAGCCATTTCCAGAACAA+TGG + chr5_2:8692604-8692623 None:intergenic 50.0%
GAAATGGCTGCCTTCCGTAT+AGG - chr5_2:8692612-8692631 Msa0754950:intron 50.0%
CTGCCTTCCGTATAGGAATG+TGG - chr5_2:8692619-8692638 Msa0754950:intron 50.0%
! CGTCCTGCTGTTTATCAGAG+TGG - chr5_2:8692718-8692737 Msa0754950:intron 50.0%
TGCCCACTCTGATAAACAGC+AGG + chr5_2:8692724-8692743 None:intergenic 50.0%
GCTGTTTATCAGAGTGGGCA+TGG - chr5_2:8692724-8692743 Msa0754950:intron 50.0%
TCAGGTCATTGTGGACATGC+GGG - chr5_2:8692935-8692954 Msa0754950:five_prime_UTR 50.0%
TCACCAACTTCAAGGGTCAC+TGG + chr5_2:8693014-8693033 None:intergenic 50.0%
GACGACCTGATGTGAAACTC+TGG + chr5_2:8693091-8693110 None:intergenic 50.0%
AGGTCGTCTATACAACCAGG+TGG - chr5_2:8693103-8693122 Msa0754950:intron 50.0%
! GCTTGTTCATATTCTGGGGG+TGG - chr5_2:8693258-8693277 Msa0754950:intron 50.0%
!!! GGGTGGGATGTTGTTTTGAC+AGG - chr5_2:8693275-8693294 Msa0754950:intron 50.0%
!!! GGGATGTTGTTTTGACAGGC+AGG - chr5_2:8693279-8693298 Msa0754950:intron 50.0%
CACCAATATCACTGGCAGAC+TGG + chr5_2:8693593-8693612 None:intergenic 50.0%
TTCCCCGGCTACGTATAATC+TGG - chr5_2:8693667-8693686 Msa0754950:five_prime_UTR 50.0%
GACCAGATTATACGTAGCCG+GGG + chr5_2:8693672-8693691 None:intergenic 50.0%
AATGAGAGTGGGTGTCCCTT+CGG - chr5_2:8693767-8693786 Msa0754950:five_prime_UTR 50.0%
CCCTTCGGAAGAAGGAATTG+TGG - chr5_2:8693782-8693801 Msa0754950:five_prime_UTR 50.0%
GGGGTTAATGCTGTGATCAC+AGG - chr5_2:8694249-8694268 Msa0754950:five_prime_UTR 50.0%
AGGTCGGCGGTGATTTCAGT+CGG + chr5_2:8688717-8688736 None:intergenic 55.0%
GATGAAACAAACGTGGCCGG+AGG + chr5_2:8688769-8688788 None:intergenic 55.0%
TTCTGATCGTCCTCAGGCGA+TGG - chr5_2:8688953-8688972 Msa0754950:intron 55.0%
!!! CTGGTTTTGCGAAGGCAGAG+AGG - chr5_2:8688979-8688998 Msa0754950:intron 55.0%
GGAGCTTGAAAGGGATCCAC+CGG - chr5_2:8689067-8689086 Msa0754950:intron 55.0%
TGAAAGGGATCCACCGGATG+TGG - chr5_2:8689073-8689092 Msa0754950:intron 55.0%
TCGTAGACCAGGGCTCTGTT+TGG - chr5_2:8689508-8689527 Msa0754950:intron 55.0%
AGATGTGCCATGCCAAGCTG+TGG - chr5_2:8690308-8690327 Msa0754950:intron 55.0%
ATGCAGTCCACAGCTTGGCA+TGG + chr5_2:8690318-8690337 None:intergenic 55.0%
!! GGATGACCTGAAGCGGGTTA+TGG - chr5_2:8690603-8690622 Msa0754950:CDS 55.0%
GAAGGTGAAGACACCGGCAA+TGG - chr5_2:8690760-8690779 Msa0754950:CDS 55.0%
GGAGTCACTCCCATATCCCT+TGG - chr5_2:8691844-8691863 Msa0754950:intron 55.0%
! GCAGGAGCATGATGCACTTC+TGG - chr5_2:8691897-8691916 Msa0754950:intron 55.0%
!! ACCCCTCAGTCTGATTTGGG+TGG - chr5_2:8691973-8691992 Msa0754950:intron 55.0%
CCATCTCTTGCCATGGCATC+AGG + chr5_2:8692237-8692256 None:intergenic 55.0%
CCTGATGCCATGGCAAGAGA+TGG - chr5_2:8692234-8692253 Msa0754950:CDS 55.0%
TGGCTTCCCATCTCTTGCCA+TGG + chr5_2:8692244-8692263 None:intergenic 55.0%
GCTGCTTCGGTCCATTGTTC+TGG - chr5_2:8692590-8692609 Msa0754950:five_prime_UTR 55.0%
ATCGGGCCATTGTTTCCACC+TGG + chr5_2:8693121-8693140 None:intergenic 55.0%
GGTCGGCGGTGATTTCAGTC+GGG + chr5_2:8688716-8688735 None:intergenic 60.0%
ACGGTGGTTAACGGCGAGGT+CGG + chr5_2:8688733-8688752 None:intergenic 60.0%
AGTGACGGTGGTTAACGGCG+AGG + chr5_2:8688737-8688756 None:intergenic 60.0%
CGTCCTCAGGCGATGGTTTC+TGG - chr5_2:8688960-8688979 Msa0754950:intron 60.0%
AAGGGATCCACCGGATGTGG+TGG - chr5_2:8689076-8689095 Msa0754950:intron 60.0%
GTGGGTGTCCCTTCGGAAGA+AGG - chr5_2:8693774-8693793 Msa0754950:five_prime_UTR 60.0%
GTGGTTAACGGCGAGGTCGG+CGG + chr5_2:8688730-8688749 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 8688386 8694623 8688386 ID=Msa0754950;Name=Msa0754950
chr5_2 mRNA 8688386 8694623 8688386 ID=Msa0754950-mRNA-1;Parent=Msa0754950;Name=Msa0754950-mRNA-1;_AED=0.03;_eAED=0.03;_QI=1578|0.87|0.88|1|0.87|0.88|9|142|551
chr5_2 exon 8688386 8688738 8688386 ID=Msa0754950-mRNA-1:exon:3978;Parent=Msa0754950-mRNA-1
chr5_2 exon 8689192 8689415 8689192 ID=Msa0754950-mRNA-1:exon:3977;Parent=Msa0754950-mRNA-1
chr5_2 exon 8689888 8690070 8689888 ID=Msa0754950-mRNA-1:exon:3976;Parent=Msa0754950-mRNA-1
chr5_2 exon 8690163 8690273 8690163 ID=Msa0754950-mRNA-1:exon:3975;Parent=Msa0754950-mRNA-1
chr5_2 exon 8690470 8691273 8690470 ID=Msa0754950-mRNA-1:exon:3974;Parent=Msa0754950-mRNA-1
chr5_2 exon 8692151 8692315 8692151 ID=Msa0754950-mRNA-1:exon:3973;Parent=Msa0754950-mRNA-1
chr5_2 exon 8692542 8692627 8692542 ID=Msa0754950-mRNA-1:exon:3972;Parent=Msa0754950-mRNA-1
chr5_2 exon 8692823 8693046 8692823 ID=Msa0754950-mRNA-1:exon:3971;Parent=Msa0754950-mRNA-1
chr5_2 exon 8693398 8694623 8693398 ID=Msa0754950-mRNA-1:exon:3970;Parent=Msa0754950-mRNA-1
chr5_2 five_prime_UTR 8693398 8694623 8693398 ID=Msa0754950-mRNA-1:five_prime_utr;Parent=Msa0754950-mRNA-1
chr5_2 five_prime_UTR 8692823 8693046 8692823 ID=Msa0754950-mRNA-1:five_prime_utr;Parent=Msa0754950-mRNA-1
chr5_2 five_prime_UTR 8692542 8692627 8692542 ID=Msa0754950-mRNA-1:five_prime_utr;Parent=Msa0754950-mRNA-1
chr5_2 five_prime_UTR 8692274 8692315 8692274 ID=Msa0754950-mRNA-1:five_prime_utr;Parent=Msa0754950-mRNA-1
chr5_2 CDS 8692151 8692273 8692151 ID=Msa0754950-mRNA-1:cds;Parent=Msa0754950-mRNA-1
chr5_2 CDS 8690470 8691273 8690470 ID=Msa0754950-mRNA-1:cds;Parent=Msa0754950-mRNA-1
chr5_2 CDS 8690163 8690273 8690163 ID=Msa0754950-mRNA-1:cds;Parent=Msa0754950-mRNA-1
chr5_2 CDS 8689888 8690070 8689888 ID=Msa0754950-mRNA-1:cds;Parent=Msa0754950-mRNA-1
chr5_2 CDS 8689192 8689415 8689192 ID=Msa0754950-mRNA-1:cds;Parent=Msa0754950-mRNA-1
chr5_2 CDS 8688528 8688738 8688528 ID=Msa0754950-mRNA-1:cds;Parent=Msa0754950-mRNA-1
chr5_2 three_prime_UTR 8688386 8688527 8688386 ID=Msa0754950-mRNA-1:three_prime_utr;Parent=Msa0754950-mRNA-1
Gene Sequence

>Msa0754950

ATGCTGAGAGAAGAAGTGTTGGCTGAAGGTGAAGACACCGGCAATGGCATTGTATTGGTGGCATGTAAAGATGAAAGGTCGTGCTTGCAGCTTGACGAATGCATCGCCAACAGTCCAAAAAAGGTCATGCAAGATGAATGGAAGAAGTACTTACTGAACAAAGTACAACTGCGTGATGTAGTGCATAAGAAAAAGAAGCCAAAGGATCCTAAGGGTTTTGGGATTCTTAATGGAGTCACTCCCATATCCCTTGGACAGAATACAGAAACTGGTGGCATCAATAAGCAGGAGCATGATGCACTTCTGGCAGCAGCTTCGAAACTGCGAAATCTTTCTGAAAAAAATCATGTTGTTGAAGATACCCCTCAGTCTGATTTGGGTGGACATGTTCGTGGAAAAGGCAAGAGAAAATTGGGGAATAGAAATGGCCCAATCATTATTGATGGCTCTAGTGTTCAGAGTAACAATAAGGAGGAAGTGGCAAGTGGTAAAACTGGGATATCCGATTCAAAAAATAAAGTCCACATGGGTGAAACTAGTGCTGTCAGTAATGATAGAGTTTGTGAAACCAAACACGGGGGGATATCTGTAGACGATGCAGTTCTTCGGAGGCATACCTTTCCTGATGCCATGGCAAGAGATGGGAAGCCACTACCACCAGTACATTTTTATGCCCTTGAAAGTGATCAGCCTATACTGGACATATTAAAGCCCTCTATAATTGTCGTTTACCATCCAGACATGACCTTTGTAAGAGAAATCGAAGTCTACAAAGCTGAGAATCCCTCTAAAAGGTTGAAGGTATACTTTATTTTCTATGAAGATTCTACCGAGGTTCAGAAGTTTGAGGCAAGTATACGTAGAGAGAATGGAGCATTTGAATCTTTGATCAGACAAAAATCTATGATGATGATTCCAATTGACCAGAGTGGGCATGGTTTAGGATTTAATTCTACCCTAGATTCAGATTTAAATACTACCCAGAACTCAATAACCAGAAAAGCAGGTGGGAGAAAAGAGGTTGATAAAGAAATGCAGGTCATTGTGGACATGCGGGAGTTCATGAGCAGCCTTCCAAATATTCTTCATCAAAAGGGAATGCGCATAATTCCAGTGACCCTTGAAGTTGGTGACTATATCCTATCACCATTAATTTGCGTGGAAAGGAAAAGTATTCAGGATCTCTTCCAGAGTTTCACATCAGGTCGTCTATACAACCAGTCTGCCAGTGATATTGGTGATGATGTGACACCCAATAGCATTATATCAAAGTTGTCATTACTTGCTCTACATTTTCCCCGGCTACGTATAATCTGGTCTCGAAGTTTGCATGCAACTTCTGAAATATTTGCTTCACTAAAGGCAAATCAAGATGAACCAGATGAAACAAAAGCAATGAGAGTGGGTGTCCCTTCGGAAGAAGGAATTGTGGAAAGTGACGTGAGGGCTGAAAATTACAACACATCGGCTGTGGAGTTTCTAAGACGACTTCCTGGTGTTACAGATTCTAATTATAGGGCCATAATGGATGGGTGTAAAAGTTTGGCAGAACTTGCACTTCTTCCAGTAGAAAAGCTAGCTGAAATAATGGGTGGTCATAAAGCTGCTCGTACCCTTAGAGACTTTCTAGATGCTAAATATCCCACTTTGTTGTGA
Protein sequence

>Msa0754950

MLREEVLAEGEDTGNGIVLVACKDERSCLQLDECIANSPKKVMQDEWKKYLLNKVQLRDVVHKKKKPKDPKGFGILNGVTPISLGQNTETGGINKQEHDALLAAASKLRNLSEKNHVVEDTPQSDLGGHVRGKGKRKLGNRNGPIIIDGSSVQSNNKEEVASGKTGISDSKNKVHMGETSAVSNDRVCETKHGGISVDDAVLRRHTFPDAMARDGKPLPPVHFYALESDQPILDILKPSIIVVYHPDMTFVREIEVYKAENPSKRLKVYFIFYEDSTEVQKFEASIRRENGAFESLIRQKSMMMIPIDQSGHGLGFNSTLDSDLNTTQNSITRKAGGRKEVDKEMQVIVDMREFMSSLPNILHQKGMRIIPVTLEVGDYILSPLICVERKSIQDLFQSFTSGRLYNQSASDIGDDVTPNSIISKLSLLALHFPRLRIIWSRSLHATSEIFASLKANQDEPDETKAMRVGVPSEEGIVESDVRAENYNTSAVEFLRRLPGVTDSNYRAIMDGCKSLAELALLPVEKLAEIMGGHKAARTLRDFLDAKYPTLL*