AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0755000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0755000 MtrunA17_Chr5g0399861 69.231 130 6 1 1 96 1 130 9.42e-59 177
Msa0755000 MtrunA17_Chr5g0399881 69.231 130 6 1 1 96 1 130 1.86e-58 177
Msa0755000 MtrunA17_Chr5g0399851 49.074 108 15 1 29 96 6 113 4.36e-28 99.4
Msa0755000 MtrunA17_Chr4g0070271 35.185 108 43 3 5 96 73 169 8.83e-14 63.5
Msa0755000 MtrunA17_Chr2g0301131 50.000 52 20 1 25 76 99 144 2.39e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 60 sgRNAs with CRISPR-Local

Find 485 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTACAAGAGATTCCTATTT+TGG 0.046444 5_2:+8754351 Msa0755000:CDS
CGCCTTAAAGGTAGAGAATT+TGG 0.112365 5_2:+8755402 Msa0755000:three_prime_UTR
ATCCAAATTCTCTACCTTTA+AGG 0.113414 5_2:-8755404 None:intergenic
TACACTATTATAATCAATTT+TGG 0.164904 5_2:+8755558 Msa0755000:three_prime_UTR
ATTCATCAATTGACTTATTT+AGG 0.185988 5_2:-8755808 None:intergenic
GATAACCAATTTACTAAAAT+TGG 0.211487 5_2:-8755651 None:intergenic
TTATAGTTTCAATCCGTTTC+TGG 0.215419 5_2:+8755460 Msa0755000:three_prime_UTR
TGTATCCTCGGCTCGACTTT+AGG 0.251341 5_2:-8755586 None:intergenic
AGCTTCACTTCATCGGTTCT+TGG 0.292747 5_2:+8754913 Msa0755000:CDS
ATCCTCTCAAAACTAATATA+TGG 0.324946 5_2:+8755671 Msa0755000:three_prime_UTR
TCAACCAGAACAACACTTAA+TGG 0.328246 5_2:-8755979 None:intergenic
CCAAAATAGGAATCTCTTGT+AGG 0.331403 5_2:-8754351 None:intergenic
GACAAACATATCAGTCAATA+TGG 0.340189 5_2:-8755727 None:intergenic
TGTACCATTAAGTGTTGTTC+TGG 0.342549 5_2:+8755975 Msa0755000:three_prime_UTR
ACGGGAGGGAGTTCTAAAAT+TGG 0.385479 5_2:-8755226 None:intergenic
TACCTGGAGTTTCCCAAAAT+AGG 0.395618 5_2:-8754364 None:intergenic
AGTGAAGCTTTCCTTGTCAT+TGG 0.396031 5_2:-8754899 None:intergenic
TCCAAACATCACAATAGAAA+AGG 0.404418 5_2:-8755699 None:intergenic
GGAAAAGTCCATGATGTCTT+TGG 0.411671 5_2:-8754632 None:intergenic
ATGTCTTTGGCTTTATCAGC+TGG 0.417227 5_2:-8754619 None:intergenic
GCTGGATTACTTGTTTGATA+AGG 0.423471 5_2:-8755779 None:intergenic
TGAAGTACTAGTAATTCCTT+TGG 0.428902 5_2:-8754656 None:intergenic
GACTTATTTAGGAATGCTGC+TGG 0.431039 5_2:-8755797 None:intergenic
AAGTAGTGTGTTTGATTCTA+CGG 0.437591 5_2:+8755034 Msa0755000:three_prime_UTR
GACATGACTCTTTGTATCCT+CGG 0.452320 5_2:-8755598 None:intergenic
CAAATGACAATCTTCTATGA+TGG 0.453411 5_2:+8754571 Msa0755000:CDS
AACACACTACTTAACAATTG+AGG 0.457393 5_2:-8755023 None:intergenic
TTCATCGGTTCTTGGAGAAA+AGG 0.463618 5_2:+8754921 Msa0755000:CDS
GGAAGCTGTTGAAAATTCAT+AGG 0.469618 5_2:-8754319 None:intergenic
ATATTTGATTGAGAGAGATC+TGG 0.495274 5_2:-8754961 None:intergenic
AGTACTAGTAATTCCTTTGG+TGG 0.499055 5_2:-8754653 None:intergenic
GGATTGAGATATAGTGACTT+TGG 0.505442 5_2:+8755110 Msa0755000:three_prime_UTR
ATCCATGTCATGGCTATCCT+TGG 0.509457 5_2:+8755829 Msa0755000:three_prime_UTR
AATGAAGGCTAATGTTAAGA+AGG 0.511094 5_2:+8754531 Msa0755000:CDS
CCAAACATCACAATAGAAAA+GGG 0.513329 5_2:-8755698 None:intergenic
CAAGGAAAGCTTCACTTCAT+CGG 0.526583 5_2:+8754906 Msa0755000:CDS
ATGGAATAAATAGTTGAAGA+AGG 0.536535 5_2:-8754263 None:intergenic
AAATGACAATCTTCTATGAT+GGG 0.538308 5_2:+8754572 Msa0755000:CDS
CTACATTCAGATTTGTGTTG+CGG 0.544643 5_2:-8755863 None:intergenic
AGATATAGTGACTTTGGTGA+TGG 0.562046 5_2:+8755116 Msa0755000:three_prime_UTR
ATCTCTTGTAGGAAGAGATG+AGG 0.564072 5_2:-8754340 None:intergenic
TCTTGGAGAAAAGGAAGGAT+AGG 0.567398 5_2:+8754930 Msa0755000:CDS
GGCTAATGTTAAGAAGGAAG+AGG 0.580916 5_2:+8754537 Msa0755000:CDS
TGATAAAGCCAAAGACATCA+TGG 0.585378 5_2:+8754624 Msa0755000:CDS
TCGGTTCTTGGAGAAAAGGA+AGG 0.585705 5_2:+8754925 Msa0755000:CDS
TTTATATAAAAGTGACGGGA+GGG 0.602729 5_2:-8755240 None:intergenic
GTTTCTGCAGAATTGCTGCA+AGG 0.606526 5_2:+8755753 Msa0755000:three_prime_UTR
TTTCTGCAGAATTGCTGCAA+GGG 0.611240 5_2:+8755754 Msa0755000:three_prime_UTR
CAATTGATGAATCCATGTCA+TGG 0.612586 5_2:+8755819 Msa0755000:three_prime_UTR
TTGATTGAGAGAGATCTGGC+TGG 0.614955 5_2:-8754957 None:intergenic
GATATAGTGACTTTGGTGAT+GGG 0.617195 5_2:+8755117 Msa0755000:three_prime_UTR
TGCCAAGGATAGCCATGACA+TGG 0.617530 5_2:-8755831 None:intergenic
GTACATATTAGTTAATGTTG+AGG 0.621240 5_2:+8755940 Msa0755000:three_prime_UTR
GATTTGTGTTGCGGTGAATG+TGG 0.622415 5_2:-8755854 None:intergenic
GATACCATGAACAAAAGTGA+AGG 0.623946 5_2:+8755626 Msa0755000:three_prime_UTR
ATTGTTATAGAAGATGTCCT+CGG 0.627775 5_2:+8756061 Msa0755000:three_prime_UTR
TTGCGGTGAATGTGGTGCCA+AGG 0.648709 5_2:-8755846 None:intergenic
CTCATCCTAAAGTCGAGCCG+AGG 0.663904 5_2:+8755581 Msa0755000:three_prime_UTR
ATTCAGATTTACCAATGACA+AGG 0.664984 5_2:+8754888 Msa0755000:intron
TCGACATAAGAATGATACCG+AGG 0.723742 5_2:-8756078 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTATGGTAATTTTTTTT+TGG + chr5_2:8749169-8749188 Msa0755000:intron 10.0%
!! AATAAAATTAAATGTAAGTT+TGG + chr5_2:8749435-8749454 Msa0755000:intron 10.0%
!! TATTTACATAACTATTTATT+TGG + chr5_2:8750100-8750119 Msa0755000:intron 10.0%
!! ATTTACATAACTATTTATTT+GGG + chr5_2:8750101-8750120 Msa0755000:intron 10.0%
!! TAAAAAGTTAAAATACTTAT+AGG - chr5_2:8751773-8751792 None:intergenic 10.0%
!! AAAAATTCATATTTAATTCA+TGG + chr5_2:8751968-8751987 Msa0755000:intron 10.0%
!!! ACTATGTTAATATTTTATTA+AGG - chr5_2:8752426-8752445 None:intergenic 10.0%
!!! TTTATATAAAATCAATTTTG+TGG - chr5_2:8753108-8753127 None:intergenic 10.0%
!!! TCTCATTTATTTATTTTTAA+AGG - chr5_2:8753834-8753853 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+TGG - chr5_2:8750763-8750782 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr5_2:8750763-8750782 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr5_2:8750763-8750782 None:intergenic 100.0%
!! AAAAAATTACCATAAATAAC+AGG - chr5_2:8749167-8749186 None:intergenic 15.0%
!! ATTACTAATATTATGATGTT+TGG + chr5_2:8749696-8749715 Msa0755000:intron 15.0%
!! TTACTAATATTATGATGTTT+GGG + chr5_2:8749697-8749716 Msa0755000:intron 15.0%
!!! AAATATAAAGTTTTATGTTG+TGG - chr5_2:8750183-8750202 None:intergenic 15.0%
!! TAAAGAAATAAAAAACTAGA+CGG - chr5_2:8750556-8750575 None:intergenic 15.0%
!!! CCTTAACTTTTTTTATTTAA+GGG - chr5_2:8751544-8751563 None:intergenic 15.0%
!! CCTTAAATAAAAAAAGTTAA+GGG + chr5_2:8751542-8751561 Msa0755000:intron 15.0%
!!! CATAATCATATTTAACTTTT+GGG - chr5_2:8751747-8751766 None:intergenic 15.0%
!! TTCAAATATTTACTTTACAT+GGG + chr5_2:8752223-8752242 Msa0755000:intron 15.0%
!!! ATAACCATATTAATTTTTAG+AGG - chr5_2:8752985-8753004 None:intergenic 15.0%
!! AACATAACTTATTACTAAAA+AGG + chr5_2:8753044-8753063 Msa0755000:intron 15.0%
!!! CTATACTTTTATAAATATCA+GGG - chr5_2:8753206-8753225 None:intergenic 15.0%
!!! ACTATACTTTTATAAATATC+AGG - chr5_2:8753207-8753226 None:intergenic 15.0%
!!! TTATAAGTTTTAAGATTCAA+TGG - chr5_2:8753300-8753319 None:intergenic 15.0%
!!! TTTGTGAATTTAAAATTTAG+TGG - chr5_2:8753576-8753595 None:intergenic 15.0%
!!! ATTTTAAATTCACAAATCAA+TGG + chr5_2:8753580-8753599 Msa0755000:intron 15.0%
!!! TGATAGATAAATCAATTTTA+AGG + chr5_2:8755201-8755220 Msa0755000:three_prime_UTR 15.0%
!!! TTTTTGTTTATAATAGTGAT+TGG + chr5_2:8755326-8755345 Msa0755000:three_prime_UTR 15.0%
!!! TACACTATTATAATCAATTT+TGG + chr5_2:8755558-8755577 Msa0755000:three_prime_UTR 15.0%
!!! TGTTAATAAACTTCACTTTT+TGG + chr5_2:8749384-8749403 Msa0755000:intron 20.0%
!!! GTTAATAAACTTCACTTTTT+GGG + chr5_2:8749385-8749404 Msa0755000:intron 20.0%
!!! TTAATAAACTTCACTTTTTG+GGG + chr5_2:8749386-8749405 Msa0755000:intron 20.0%
!!! GTTAGTTTTTTTTTTTGCAA+AGG - chr5_2:8750356-8750375 None:intergenic 20.0%
!! ATCGAAAAAATTATGATAAG+TGG - chr5_2:8750519-8750538 None:intergenic 20.0%
!! TTATAAACTTACATGTTGTT+TGG + chr5_2:8750860-8750879 Msa0755000:intron 20.0%
!! TTATAAACTTACATGTTGTT+TGG + chr5_2:8750860-8750879 Msa0755000:intron 20.0%
!! TTATAAACTTACATGTTGTT+TGG + chr5_2:8750860-8750879 Msa0755000:intron 20.0%
!! TTATAAACTTACATGTTGTT+TGG + chr5_2:8750860-8750879 Msa0755000:intron 20.0%
!!! CAATGCAAAATTATCATTTT+TGG + chr5_2:8751491-8751510 Msa0755000:intron 20.0%
!! CCCTTAAATAAAAAAAGTTA+AGG + chr5_2:8751541-8751560 Msa0755000:intron 20.0%
!!! CCCTTAACTTTTTTTATTTA+AGG - chr5_2:8751545-8751564 None:intergenic 20.0%
!!! CAAATGTAGAAACTTTTTAT+TGG + chr5_2:8751604-8751623 Msa0755000:intron 20.0%
!! ATTGAATGCACAAATATTAA+TGG + chr5_2:8751665-8751684 Msa0755000:intron 20.0%
!!! CCATAATCATATTTAACTTT+TGG - chr5_2:8751748-8751767 None:intergenic 20.0%
!! CCAAAAGTTAAATATGATTA+TGG + chr5_2:8751745-8751764 Msa0755000:intron 20.0%
!!! TATGTTTACATTTTTAGACA+TGG + chr5_2:8752188-8752207 Msa0755000:intron 20.0%
!!! ATGTTTACATTTTTAGACAT+GGG + chr5_2:8752189-8752208 Msa0755000:intron 20.0%
!! CTTCAAATATTTACTTTACA+TGG + chr5_2:8752222-8752241 Msa0755000:intron 20.0%
!! ATCCTAGAAAGAATAAAATT+GGG - chr5_2:8752388-8752407 None:intergenic 20.0%
!! AATCCTAGAAAGAATAAAAT+TGG - chr5_2:8752389-8752408 None:intergenic 20.0%
!!! ATTTTATTAAGGTTGATCAT+CGG - chr5_2:8752415-8752434 None:intergenic 20.0%
!!! CAGTTTTATGAATTCTAAAA+TGG + chr5_2:8752792-8752811 Msa0755000:intron 20.0%
!! TTAAAACAGGATATTTATCA+GGG + chr5_2:8752894-8752913 Msa0755000:intron 20.0%
!!! CTAAAGCAAAAATTTTAATG+TGG - chr5_2:8753161-8753180 None:intergenic 20.0%
!!! CACATTAAAATTTTTGCTTT+AGG + chr5_2:8753159-8753178 Msa0755000:intron 20.0%
!! CACTACTCTATAAATATATA+TGG + chr5_2:8753500-8753519 Msa0755000:intron 20.0%
!!! TATTTTTTAATGTTTAGTCG+AGG - chr5_2:8753782-8753801 None:intergenic 20.0%
!! AGAAATCCAAAGTTATTATT+CGG + chr5_2:8753851-8753870 Msa0755000:intron 20.0%
!!! ATTGAATAAATGACTTGTTT+TGG - chr5_2:8754030-8754049 None:intergenic 20.0%
!!! AGAAGTTTTTTATATCTTGT+AGG - chr5_2:8754222-8754241 None:intergenic 20.0%
!! AAAAACTTACCATAAATAAC+AGG - chr5_2:8754781-8754800 None:intergenic 20.0%
!!! GTTATTTATGGTAAGTTTTT+TGG + chr5_2:8754781-8754800 Msa0755000:intron 20.0%
!! TTGGATATATTATGTTTAAG+AGG + chr5_2:8754800-8754819 Msa0755000:intron 20.0%
!! TGGATATATTATGTTTAAGA+GGG + chr5_2:8754801-8754820 Msa0755000:intron 20.0%
!!! AGTGTAATTTTGTGTATTTT+AGG + chr5_2:8755157-8755176 Msa0755000:three_prime_UTR 20.0%
!!! TTGCTTTTATATAAAAGTGA+CGG - chr5_2:8755248-8755267 None:intergenic 20.0%
!!! TATAGTTTTTTTCTCTACAT+TGG - chr5_2:8755438-8755457 None:intergenic 20.0%
!! GATAACCAATTTACTAAAAT+TGG - chr5_2:8755654-8755673 None:intergenic 20.0%
!!! ATTCATCAATTGACTTATTT+AGG - chr5_2:8755811-8755830 None:intergenic 20.0%
!!! GTTTTGTTTTGTGCTTTTTT+TGG - chr5_2:8748678-8748697 None:intergenic 25.0%
! CATACTAGTAGTATATAACA+TGG + chr5_2:8748867-8748886 Msa0755000:intron 25.0%
!!! GTTTTATTACAGTGTAATGA+AGG + chr5_2:8748920-8748939 Msa0755000:intron 25.0%
! AAATGACAATCTTCTATGAT+GGG + chr5_2:8748976-8748995 Msa0755000:intron 25.0%
!! TTGGATATTTTATGTTTGAG+AGG + chr5_2:8749188-8749207 Msa0755000:intron 25.0%
!! TGGATATTTTATGTTTGAGA+GGG + chr5_2:8749189-8749208 Msa0755000:intron 25.0%
! AAACATGTCAAAATCAATCT+TGG - chr5_2:8749478-8749497 None:intergenic 25.0%
! AATGTACAGTGATTTATGTT+TGG - chr5_2:8749619-8749638 None:intergenic 25.0%
! AACAAACATATCAGTCAATA+TGG - chr5_2:8749725-8749744 None:intergenic 25.0%
! AAACAGTTAAAGTAACACAT+GGG - chr5_2:8749892-8749911 None:intergenic 25.0%
! AAAACAGTTAAAGTAACACA+TGG - chr5_2:8749893-8749912 None:intergenic 25.0%
!!! TTTAACTGTTTTTGTTAGCA+CGG + chr5_2:8749901-8749920 Msa0755000:intron 25.0%
!! ATACATACTTTTGTGAGAAT+AGG - chr5_2:8749989-8750008 None:intergenic 25.0%
! ATACATATTTGTGATTGTTG+TGG + chr5_2:8750007-8750026 Msa0755000:intron 25.0%
!!! ACAAGTAGTACACTTTTTTT+AGG - chr5_2:8750079-8750098 None:intergenic 25.0%
!!! TATAAAGTTTTATGTTGTGG+AGG - chr5_2:8750180-8750199 None:intergenic 25.0%
! ATTCAATAAGGAAAATCGAA+TGG + chr5_2:8750235-8750254 Msa0755000:intron 25.0%
! GAATGGAAAGAAAAAACAAA+GGG + chr5_2:8750252-8750271 Msa0755000:intron 25.0%
! TTGGTAAAATTGAATTGAAC+TGG + chr5_2:8750285-8750304 Msa0755000:intron 25.0%
! ATTGAATTGAACTGGTATAA+AGG + chr5_2:8750293-8750312 Msa0755000:intron 25.0%
!!! AGTTTTTTTTTTTGCAAAGG+TGG - chr5_2:8750353-8750372 None:intergenic 25.0%
! TGAAATTATAAAAAATCCCC+TGG + chr5_2:8750684-8750703 Msa0755000:intron 25.0%
! GAAATTATAAAAAATCCCCT+GGG + chr5_2:8750685-8750704 Msa0755000:intron 25.0%
!!! TATTTTTTGAGGATAGTTTC+AGG + chr5_2:8751305-8751324 Msa0755000:intron 25.0%
! TGAAAAGAAGAGCAAAAAAT+AGG - chr5_2:8751830-8751849 None:intergenic 25.0%
! ATGATGTGTCAAATAGATAA+TGG - chr5_2:8752069-8752088 None:intergenic 25.0%
! TTATCTATTTGACACATCAT+CGG + chr5_2:8752069-8752088 Msa0755000:intron 25.0%
! CAAAATAAATTACTACCTCA+AGG - chr5_2:8752120-8752139 None:intergenic 25.0%
! AGAAAGAATAAAATTGGGTT+TGG - chr5_2:8752383-8752402 None:intergenic 25.0%
!! AACCCAATTTTATTCTTTCT+AGG + chr5_2:8752383-8752402 Msa0755000:intron 25.0%
! GTGAAAATTTAGTGTTAACT+TGG - chr5_2:8752544-8752563 None:intergenic 25.0%
!! AATTTTCACATAAAAACTCC+CGG + chr5_2:8752555-8752574 Msa0755000:intron 25.0%
!! TATTAAAGTGTCTATTGCTA+AGG + chr5_2:8752610-8752629 Msa0755000:intron 25.0%
!!! TTTATGAATTCTAAAATGGC+TGG + chr5_2:8752796-8752815 Msa0755000:intron 25.0%
!!! TTATGAATTCTAAAATGGCT+GGG + chr5_2:8752797-8752816 Msa0755000:intron 25.0%
!!! ATTTTTCTTGCTTTTCTCAT+AGG - chr5_2:8752825-8752844 None:intergenic 25.0%
!!! ATATCTATACGTGCTATTTT+TGG - chr5_2:8752854-8752873 None:intergenic 25.0%
! CTTAAAACAGGATATTTATC+AGG + chr5_2:8752893-8752912 Msa0755000:intron 25.0%
!!! TTTTTTCACCCATAATTTTG+AGG - chr5_2:8752959-8752978 None:intergenic 25.0%
! CAAAATTATGGGTGAAAAAA+AGG + chr5_2:8752959-8752978 Msa0755000:intron 25.0%
!! AAGGCCTCTAAAAATTAATA+TGG + chr5_2:8752978-8752997 Msa0755000:intron 25.0%
! GGTAAATAGTATAGATTTGT+TGG - chr5_2:8753249-8753268 None:intergenic 25.0%
!! TCAATGGATATGATTTTGTA+AGG - chr5_2:8753284-8753303 None:intergenic 25.0%
!! TGATATTTGTACAACCATTT+TGG + chr5_2:8753330-8753349 Msa0755000:intron 25.0%
! AAAACAATAGAGAGAGAAAA+AGG - chr5_2:8753414-8753433 None:intergenic 25.0%
! ATCAATGGTTGCAAATAATA+TGG + chr5_2:8753595-8753614 Msa0755000:intron 25.0%
! ATTGTTCCGAATAATAACTT+TGG - chr5_2:8753860-8753879 None:intergenic 25.0%
! ATAAATAACACATGCTGATA+TGG + chr5_2:8753992-8754011 Msa0755000:intron 25.0%
! TAAATAACACATGCTGATAT+GGG + chr5_2:8753993-8754012 Msa0755000:intron 25.0%
!!! AAATGACTTGTTTTGGTTTT+TGG - chr5_2:8754023-8754042 None:intergenic 25.0%
! ATGGAATAAATAGTTGAAGA+AGG - chr5_2:8754266-8754285 None:intergenic 25.0%
! CATACTAGTAGTATATAACA+TGG + chr5_2:8748867-8748886 Msa0755000:intron 25.0%
!!! GTTTTATTACAGTGTAATGA+AGG + chr5_2:8748920-8748939 Msa0755000:intron 25.0%
! AAATGACAATCTTCTATGAT+GGG + chr5_2:8748976-8748995 Msa0755000:intron 25.0%
! GTTACAAAAATTGATTGAAC+TGG + chr5_2:8755056-8755075 Msa0755000:three_prime_UTR 25.0%
!! TGCTTTTATATAAAAGTGAC+GGG - chr5_2:8755247-8755266 None:intergenic 25.0%
!! TTTTCTCTACATTGGATTTT+TGG - chr5_2:8755430-8755449 None:intergenic 25.0%
! ATCCTCTCAAAACTAATATA+TGG + chr5_2:8755671-8755690 Msa0755000:three_prime_UTR 25.0%
!!! ACACATATTTTTGTGAGTAT+AGG - chr5_2:8755922-8755941 None:intergenic 25.0%
! GTACATATTAGTTAATGTTG+AGG + chr5_2:8755940-8755959 Msa0755000:three_prime_UTR 25.0%
!!! GTTTTGTGCTTTTTTTGGTA+TGG - chr5_2:8748673-8748692 None:intergenic 30.0%
GGAAGTTGTTGAAAATTCAT+AGG - chr5_2:8748725-8748744 None:intergenic 30.0%
! CTACAAGAGATTCCTATTTT+GGG + chr5_2:8748755-8748774 Msa0755000:intron 30.0%
AAAAAGAACATGTATGTACC+TGG - chr5_2:8748786-8748805 None:intergenic 30.0%
AATGAAGGCTAATGTTAAGA+AGG + chr5_2:8748935-8748954 Msa0755000:intron 30.0%
CAAATGACAATCTTCTATGA+TGG + chr5_2:8748975-8748994 Msa0755000:intron 30.0%
! AGTACTAGTAATTCCTTTTG+TGG - chr5_2:8749060-8749079 None:intergenic 30.0%
! AGTAAGCATAGTTGTTATTG+TGG - chr5_2:8749091-8749110 None:intergenic 30.0%
CCATAAATAACAGGTATAGA+TGG - chr5_2:8749158-8749177 None:intergenic 30.0%
! CCATCTATACCTGTTATTTA+TGG + chr5_2:8749155-8749174 Msa0755000:intron 30.0%
AATCTTGGATTATCCAAAAG+TGG - chr5_2:8749463-8749482 None:intergenic 30.0%
CAAAATCAATTCAACTGATG+CGG - chr5_2:8749505-8749524 None:intergenic 30.0%
!! AATTGATTTTGCCTACAGAA+TGG + chr5_2:8749514-8749533 Msa0755000:intron 30.0%
! ATTGGTTTATTAATGCCTCT+TGG - chr5_2:8749795-8749814 None:intergenic 30.0%
ACTATTTATTTGGGTCCATT+TGG + chr5_2:8750110-8750129 Msa0755000:intron 30.0%
! GGACATTTTCTATAACCAAA+TGG - chr5_2:8750128-8750147 None:intergenic 30.0%
TCGAAAAAAGAAAGACATTG+AGG - chr5_2:8750149-8750168 None:intergenic 30.0%
ATATTTCCACTCTCATAACT+AGG + chr5_2:8750197-8750216 Msa0755000:intron 30.0%
CGAATGGAAAGAAAAAACAA+AGG + chr5_2:8750251-8750270 Msa0755000:intron 30.0%
AACAAAGGGAATTGAAACTT+TGG + chr5_2:8750266-8750285 Msa0755000:intron 30.0%
ATTGAACTGGTATAAAGGTT+CGG + chr5_2:8750298-8750317 Msa0755000:intron 30.0%
!!! TTTTTTTGCAAAGGTGGTTA+TGG - chr5_2:8750347-8750366 None:intergenic 30.0%
GATGATAATCGAATTTGAGA+TGG + chr5_2:8750379-8750398 Msa0755000:intron 30.0%
GTACACTATATGTCACAATT+CGG - chr5_2:8750465-8750484 None:intergenic 30.0%
AGAAAAATTATTTCCGTTGC+CGG - chr5_2:8750660-8750679 None:intergenic 30.0%
AGAAAAATTATTTCCGTTGC+CGG - chr5_2:8750660-8750679 None:intergenic 30.0%
AAAAATTAATTTCCGTTGCC+GGG - chr5_2:8750808-8750827 None:intergenic 30.0%
GAAAAATTAATTTCCGTTGC+CGG - chr5_2:8750809-8750828 None:intergenic 30.0%
AGAAAAATTATTTCCGTTGC+CGG - chr5_2:8750660-8750679 None:intergenic 30.0%
AGAAAAATTATTTCCGTTGC+CGG - chr5_2:8750660-8750679 None:intergenic 30.0%
AGAAAAATTATTTCCGTTGC+CGG - chr5_2:8750660-8750679 None:intergenic 30.0%
GAAATGAAAAGAAAGTTGAG+AGG + chr5_2:8751242-8751261 Msa0755000:intron 30.0%
TATCTATTTGACACATCATC+GGG + chr5_2:8752070-8752089 Msa0755000:intron 30.0%
ATAAATTACTACCTCAAGGA+GGG - chr5_2:8752116-8752135 None:intergenic 30.0%
AATAAATTACTACCTCAAGG+AGG - chr5_2:8752117-8752136 None:intergenic 30.0%
!!! CACGTTTTTTTTCCTAAGAA+GGG + chr5_2:8752285-8752304 Msa0755000:intron 30.0%
! TTGGGTTTGGTTTAACTTAA+GGG - chr5_2:8752370-8752389 None:intergenic 30.0%
! ATTGGGTTTGGTTTAACTTA+AGG - chr5_2:8752371-8752390 None:intergenic 30.0%
AATATTAACATAGTCGCCAA+CGG + chr5_2:8752432-8752451 Msa0755000:intron 30.0%
TAAGTTAAATCGCTCAAACT+AGG + chr5_2:8752486-8752505 Msa0755000:intron 30.0%
! ATTTTCACATAAAAACTCCC+GGG + chr5_2:8752556-8752575 Msa0755000:intron 30.0%
TGTATCATCAATGAGAGATT+AGG - chr5_2:8752735-8752754 None:intergenic 30.0%
! ATCTCTCATTGATGATACAA+AGG + chr5_2:8752736-8752755 Msa0755000:intron 30.0%
AGAAAGAATGAGCTTAAAAC+AGG + chr5_2:8752881-8752900 Msa0755000:intron 30.0%
!! AAAAAGGCATCAATTACTCT+TGG + chr5_2:8753060-8753079 Msa0755000:intron 30.0%
! ACTTTTATAAATATCAGGGC+CGG - chr5_2:8753202-8753221 None:intergenic 30.0%
GTACAAAAGTTGTACCAAAA+TGG - chr5_2:8753347-8753366 None:intergenic 30.0%
TCTCAAAGGTTGTACAAAAA+TGG + chr5_2:8753465-8753484 Msa0755000:intron 30.0%
AAATAATATGGACTTGTGCA+TGG + chr5_2:8753607-8753626 Msa0755000:intron 30.0%
AATAATATGGACTTGTGCAT+GGG + chr5_2:8753608-8753627 Msa0755000:intron 30.0%
! AAGAAGGAAGGTAGTTTTTA+GGG - chr5_2:8753658-8753677 None:intergenic 30.0%
! TAAGAAGGAAGGTAGTTTTT+AGG - chr5_2:8753659-8753678 None:intergenic 30.0%
!! TAGGCAACAATTCTAGAATA+TGG + chr5_2:8753735-8753754 Msa0755000:intron 30.0%
!! AGGCAACAATTCTAGAATAT+GGG + chr5_2:8753736-8753755 Msa0755000:intron 30.0%
TTCATCTCAAGATATCTCTT+GGG - chr5_2:8753920-8753939 None:intergenic 30.0%
TTTCATCTCAAGATATCTCT+TGG - chr5_2:8753921-8753940 None:intergenic 30.0%
AGAGATATCTTGAGATGAAA+AGG + chr5_2:8753921-8753940 Msa0755000:intron 30.0%
TTGAGATGAAAAGGAAAGAA+GGG + chr5_2:8753930-8753949 Msa0755000:intron 30.0%
!! TTTTATTTGCCTAGATCACT+TGG - chr5_2:8753973-8753992 None:intergenic 30.0%
TACTAGTTATTAAGAACGTG+TGG - chr5_2:8754197-8754216 None:intergenic 30.0%
!!! GATTCATGCTTTTTTTGGTA+TGG - chr5_2:8754285-8754304 None:intergenic 30.0%
!!! GTGATGATTCATGCTTTTTT+TGG - chr5_2:8754290-8754309 None:intergenic 30.0%
! CTACAAGAGATTCCTATTTT+GGG + chr5_2:8748755-8748774 Msa0755000:intron 30.0%
AAAAAGAACATGTATGTACC+TGG - chr5_2:8748786-8748805 None:intergenic 30.0%
AATGAAGGCTAATGTTAAGA+AGG + chr5_2:8748935-8748954 Msa0755000:intron 30.0%
CAAATGACAATCTTCTATGA+TGG + chr5_2:8748975-8748994 Msa0755000:intron 30.0%
! TGAAGTACTAGTAATTCCTT+TGG - chr5_2:8749063-8749082 None:intergenic 30.0%
! TAGTCTTGAAGAGAATTGTT+GGG - chr5_2:8754739-8754758 None:intergenic 30.0%
CCATAAATAACAGGTATAGA+TGG - chr5_2:8749158-8749177 None:intergenic 30.0%
! CCATCTATACCTGTTATTTA+TGG + chr5_2:8749155-8749174 Msa0755000:intron 30.0%
ATTCAGATTTACCAATGACA+AGG + chr5_2:8754888-8754907 Msa0755000:intron 30.0%
ATATTTGATTGAGAGAGATC+TGG - chr5_2:8754964-8754983 None:intergenic 30.0%
!!! GTCAATAGACTTCACTTTTT+AGG + chr5_2:8754996-8755015 Msa0755000:three_prime_UTR 30.0%
AACACACTACTTAACAATTG+AGG - chr5_2:8755026-8755045 None:intergenic 30.0%
AAGTAGTGTGTTTGATTCTA+CGG + chr5_2:8755034-8755053 Msa0755000:three_prime_UTR 30.0%
! GTGATTTTGCTAAAAGTGAA+TGG + chr5_2:8755089-8755108 Msa0755000:three_prime_UTR 30.0%
! TTTATATAAAAGTGACGGGA+GGG - chr5_2:8755243-8755262 None:intergenic 30.0%
!! TTTTATATAAAAGTGACGGG+AGG - chr5_2:8755244-8755263 None:intergenic 30.0%
ATCCAAATTCTCTACCTTTA+AGG - chr5_2:8755407-8755426 None:intergenic 30.0%
TTATAGTTTCAATCCGTTTC+TGG + chr5_2:8755460-8755479 Msa0755000:three_prime_UTR 30.0%
!! ATTGATTTTGCTTCCAGAAA+CGG - chr5_2:8755476-8755495 None:intergenic 30.0%
!! AGGAGCCAATTTTAGTAAAT+TGG + chr5_2:8755646-8755665 Msa0755000:three_prime_UTR 30.0%
!!! AGCCATATATTAGTTTTGAG+AGG - chr5_2:8755676-8755695 None:intergenic 30.0%
CCAAACATCACAATAGAAAA+GGG - chr5_2:8755701-8755720 None:intergenic 30.0%
TCCAAACATCACAATAGAAA+AGG - chr5_2:8755702-8755721 None:intergenic 30.0%
GACAAACATATCAGTCAATA+TGG - chr5_2:8755730-8755749 None:intergenic 30.0%
!! AACAAGTTCTACTCGTTTTT+GGG - chr5_2:8756006-8756025 None:intergenic 30.0%
! TAACAAGTTCTACTCGTTTT+TGG - chr5_2:8756007-8756026 None:intergenic 30.0%
ATTGTTATAGAAGATGTCCT+CGG + chr5_2:8756061-8756080 Msa0755000:three_prime_UTR 30.0%
CCAAAATAGGAATCTCTTGT+AGG - chr5_2:8748757-8748776 None:intergenic 35.0%
! CCTACAAGAGATTCCTATTT+TGG + chr5_2:8748754-8748773 Msa0755000:intron 35.0%
TGATAAAGCCAAAGACATCA+TGG + chr5_2:8749028-8749047 Msa0755000:intron 35.0%
! ATCATGGACTTTTCCACAAA+AGG + chr5_2:8749044-8749063 Msa0755000:intron 35.0%
ATTCAGATTTACCAATGACG+AGG + chr5_2:8749277-8749296 Msa0755000:intron 35.0%
!! TGTAAGTTTGGTTCCACTTT+TGG + chr5_2:8749447-8749466 Msa0755000:intron 35.0%
TCAAGTAGAATCCATTCTGT+AGG - chr5_2:8749528-8749547 None:intergenic 35.0%
CTTGGATTGCTTGTTTGATA+TGG - chr5_2:8749777-8749796 None:intergenic 35.0%
TATCAAACAAGCAATCCAAG+AGG + chr5_2:8749777-8749796 Msa0755000:intron 35.0%
CATGTCATGGATTCATCAAT+TGG - chr5_2:8749813-8749832 None:intergenic 35.0%
CAATTGATGAATCCATGACA+TGG + chr5_2:8749811-8749830 Msa0755000:intron 35.0%
CTCAGTCCTACAAAAATAGA+GGG - chr5_2:8749965-8749984 None:intergenic 35.0%
ACTCAGTCCTACAAAAATAG+AGG - chr5_2:8749966-8749985 None:intergenic 35.0%
! CCATTGTTAAGAGTGTAGTT+CGG + chr5_2:8750047-8750066 Msa0755000:intron 35.0%
GTTCATGGTTCGATTCAATA+AGG + chr5_2:8750223-8750242 Msa0755000:intron 35.0%
CAAATCCGTTGTAGTATAGT+TGG + chr5_2:8750592-8750611 Msa0755000:intron 35.0%
GTATAGTTGGTCAGGATATT+CGG + chr5_2:8750605-8750624 Msa0755000:intron 35.0%
GAAAAATTATTTCCGTTGCC+GGG - chr5_2:8750659-8750678 None:intergenic 35.0%
GAAAAATTATTTCCGTTGCC+GGG - chr5_2:8750659-8750678 None:intergenic 35.0%
GAAAAATTATTTCCGTTGCC+GGG - chr5_2:8750659-8750678 None:intergenic 35.0%
GAAAAATTATTTCCGTTGCC+GGG - chr5_2:8750659-8750678 None:intergenic 35.0%
GAAAAATTATTTCCGTTGCC+GGG - chr5_2:8750659-8750678 None:intergenic 35.0%
TAAAGGGAAATGCTAAAGAG+TGG + chr5_2:8751369-8751388 Msa0755000:intron 35.0%
ATTGCTTAACATGTACCCTT+AGG + chr5_2:8751705-8751724 Msa0755000:intron 35.0%
TTGCTTAACATGTACCCTTA+GGG + chr5_2:8751706-8751725 Msa0755000:intron 35.0%
GAAAAAAAACGTGCAACATG+TGG - chr5_2:8752278-8752297 None:intergenic 35.0%
!!! GCACGTTTTTTTTCCTAAGA+AGG + chr5_2:8752284-8752303 Msa0755000:intron 35.0%
! ATAATACAGAGTATCACCGT+TGG - chr5_2:8752451-8752470 None:intergenic 35.0%
!!! TAGTTTTAAGTCGTAAACCC+GGG - chr5_2:8752576-8752595 None:intergenic 35.0%
!!! CTAGTTTTAAGTCGTAAACC+CGG - chr5_2:8752577-8752596 None:intergenic 35.0%
! GCTTTAGGCCTCAAAATTAT+GGG + chr5_2:8752948-8752967 Msa0755000:intron 35.0%
TTTAGGCCTCTTAATCTCTA+GGG + chr5_2:8753176-8753195 Msa0755000:intron 35.0%
TTTGTAAGGACAACACAACA+TGG - chr5_2:8753270-8753289 None:intergenic 35.0%
! TTGTTGTTCTCTCTTCTCAT+TGG - chr5_2:8753440-8753459 None:intergenic 35.0%
GAACAACAAAGTTGTCTCAA+AGG + chr5_2:8753451-8753470 Msa0755000:intron 35.0%
AATCATGGGATTAAGAAGGA+AGG - chr5_2:8753670-8753689 None:intergenic 35.0%
ATATGGGCAACCAAGTTATT+AGG + chr5_2:8753752-8753771 Msa0755000:intron 35.0%
TCATCTCAAGATATCTCTTG+GGG - chr5_2:8753919-8753938 None:intergenic 35.0%
CTTGAGATGAAAAGGAAAGA+AGG + chr5_2:8753929-8753948 Msa0755000:intron 35.0%
TGCAACCACTAAAATGGATA+TGG + chr5_2:8754067-8754086 Msa0755000:intron 35.0%
GCAACCACTAAAATGGATAT+GGG + chr5_2:8754068-8754087 Msa0755000:intron 35.0%
!! TTGTTTGAGACAGAAGTGTT+GGG - chr5_2:8754103-8754122 None:intergenic 35.0%
! TTTGTTTGAGACAGAAGTGT+TGG - chr5_2:8754104-8754123 None:intergenic 35.0%
GGAAGCTGTTGAAAATTCAT+AGG - chr5_2:8754322-8754341 None:intergenic 35.0%
CCAAAATAGGAATCTCTTGT+AGG - chr5_2:8748757-8748776 None:intergenic 35.0%
! CCTACAAGAGATTCCTATTT+TGG + chr5_2:8748754-8748773 Msa0755000:intron 35.0%
TGATAAAGCCAAAGACATCA+TGG + chr5_2:8749028-8749047 Msa0755000:intron 35.0%
AGTACTAGTAATTCCTTTGG+TGG - chr5_2:8754656-8754675 None:intergenic 35.0%
! AGCAAGCATAGTTGTTATTG+TGG - chr5_2:8754693-8754712 None:intergenic 35.0%
! GTAGTCTTGAAGAGAATTGT+TGG - chr5_2:8754740-8754759 None:intergenic 35.0%
GGATTGAGATATAGTGACTT+TGG + chr5_2:8755110-8755129 Msa0755000:three_prime_UTR 35.0%
AGATATAGTGACTTTGGTGA+TGG + chr5_2:8755116-8755135 Msa0755000:three_prime_UTR 35.0%
! GATATAGTGACTTTGGTGAT+GGG + chr5_2:8755117-8755136 Msa0755000:three_prime_UTR 35.0%
TTAAGGCGAAAAAGTCATCA+TGG - chr5_2:8755390-8755409 None:intergenic 35.0%
!!! TGATGACTTTTTCGCCTTAA+AGG + chr5_2:8755390-8755409 Msa0755000:three_prime_UTR 35.0%
GATACCATGAACAAAAGTGA+AGG + chr5_2:8755626-8755645 Msa0755000:three_prime_UTR 35.0%
! CCCTTTTCTATTGTGATGTT+TGG + chr5_2:8755698-8755717 Msa0755000:three_prime_UTR 35.0%
GCTGGATTACTTGTTTGATA+AGG - chr5_2:8755782-8755801 None:intergenic 35.0%
CAATTGATGAATCCATGTCA+TGG + chr5_2:8755819-8755838 Msa0755000:three_prime_UTR 35.0%
CTACATTCAGATTTGTGTTG+CGG - chr5_2:8755866-8755885 None:intergenic 35.0%
CTACAAAAATAACACAGAGG+TGG - chr5_2:8755891-8755910 None:intergenic 35.0%
!!! CACCTCTGTGTTATTTTTGT+AGG + chr5_2:8755889-8755908 Msa0755000:three_prime_UTR 35.0%
GTCCTACAAAAATAACACAG+AGG - chr5_2:8755894-8755913 None:intergenic 35.0%
! TGTACCATTAAGTGTTGTTC+TGG + chr5_2:8755975-8755994 Msa0755000:three_prime_UTR 35.0%
TCAACCAGAACAACACTTAA+TGG - chr5_2:8755982-8756001 None:intergenic 35.0%
ATCTCTTGTAGGAAGAGATG+AGG - chr5_2:8748746-8748765 None:intergenic 40.0%
!! TTCCTATTTTGGGAAACTCC+AGG + chr5_2:8748765-8748784 Msa0755000:intron 40.0%
TACCTGGAGTTTCCCAAAAT+AGG - chr5_2:8748770-8748789 None:intergenic 40.0%
GGCTAATGTTAAGAAGGAAG+AGG + chr5_2:8748941-8748960 Msa0755000:intron 40.0%
!! ATGTCTTTGGCTTTATCAGC+TGG - chr5_2:8749026-8749045 None:intergenic 40.0%
GGAAAAGTCCATGATGTCTT+TGG - chr5_2:8749039-8749058 None:intergenic 40.0%
!! TTCATCGGTTCTTGGAGAAA+AGG + chr5_2:8749310-8749329 Msa0755000:intron 40.0%
TCTTGGAGAAAAGGAAGGAT+AGG + chr5_2:8749319-8749338 Msa0755000:intron 40.0%
TTGATTGAGAGAGATCTTGC+TGG - chr5_2:8749349-8749368 None:intergenic 40.0%
GATTTGTGTTGTGGTGATTG+TGG - chr5_2:8749849-8749868 None:intergenic 40.0%
CTACACTCAGATTTGTGTTG+TGG - chr5_2:8749858-8749877 None:intergenic 40.0%
TTAAAGTAACACATGGGTGG+AGG - chr5_2:8749886-8749905 None:intergenic 40.0%
CAGTTAAAGTAACACATGGG+TGG - chr5_2:8749889-8749908 None:intergenic 40.0%
!! GGTGTTGTTTCTGTATGAAC+TGG + chr5_2:8749922-8749941 Msa0755000:intron 40.0%
AACTGGATCAATCAGCTGTA+TGG + chr5_2:8749939-8749958 Msa0755000:intron 40.0%
!!! GTATGGCCCTCTATTTTTGT+AGG + chr5_2:8749956-8749975 Msa0755000:intron 40.0%
CCGAACTACACTCTTAACAA+TGG - chr5_2:8750050-8750069 None:intergenic 40.0%
TTCCACTCTCATAACTAGGA+TGG + chr5_2:8750201-8750220 Msa0755000:intron 40.0%
AACCATCCTAGTTATGAGAG+TGG - chr5_2:8750206-8750225 None:intergenic 40.0%
CTCATAACTAGGATGGTTCA+TGG + chr5_2:8750208-8750227 Msa0755000:intron 40.0%
! CAACGGATTTGTGTAATCTG+AGG - chr5_2:8750583-8750602 None:intergenic 40.0%
CCTGACCAACTATACTACAA+CGG - chr5_2:8750600-8750619 None:intergenic 40.0%
AAATCCTCGAGCATCTTTGT+GGG - chr5_2:8751277-8751296 None:intergenic 40.0%
AAAATCCTCGAGCATCTTTG+TGG - chr5_2:8751278-8751297 None:intergenic 40.0%
AAGGGTTATGCTAAAGACAC+TGG - chr5_2:8751526-8751545 None:intergenic 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG + chr5_2:8751566-8751585 Msa0755000:intron 40.0%
!! CTCATTAACTTGTGCCTTGA+GGG - chr5_2:8751583-8751602 None:intergenic 40.0%
!! ACTCATTAACTTGTGCCTTG+AGG - chr5_2:8751584-8751603 None:intergenic 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG - chr5_2:8751723-8751742 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG - chr5_2:8751724-8751743 None:intergenic 40.0%
!! ACATTTTTAGACATGGGCTC+TGG + chr5_2:8752195-8752214 Msa0755000:intron 40.0%
!! CATTTTTAGACATGGGCTCT+GGG + chr5_2:8752196-8752215 Msa0755000:intron 40.0%
TTACATGGGAGCTTAATCCA+CGG + chr5_2:8752237-8752256 Msa0755000:intron 40.0%
GCAAAGCAAATCAAAGTCTC+TGG - chr5_2:8752695-8752714 None:intergenic 40.0%
AACAGGATATTTATCAGGGC+CGG + chr5_2:8752898-8752917 Msa0755000:intron 40.0%
!! GGCTTTAGGCCTCAAAATTA+TGG + chr5_2:8752947-8752966 Msa0755000:intron 40.0%
CTTTAGGCCTCTTAATCTCT+AGG + chr5_2:8753175-8753194 Msa0755000:intron 40.0%
GGTCAATCATGGGATTAAGA+AGG - chr5_2:8753674-8753693 None:intergenic 40.0%
AGATTGTCGAGGTCAATCAT+GGG - chr5_2:8753684-8753703 None:intergenic 40.0%
! TTTTACAGTGCAGATTGTCG+AGG - chr5_2:8753695-8753714 None:intergenic 40.0%
TTGCAGCTTGCACAATGTAT+AGG + chr5_2:8753716-8753735 Msa0755000:intron 40.0%
TCGAGGTACACCTAATAACT+TGG - chr5_2:8753765-8753784 None:intergenic 40.0%
GATCACTTGGACAAGGATTA+GGG - chr5_2:8753960-8753979 None:intergenic 40.0%
AGATCACTTGGACAAGGATT+AGG - chr5_2:8753961-8753980 None:intergenic 40.0%
AATCCTTGTCCAAGTGATCT+AGG + chr5_2:8753961-8753980 Msa0755000:intron 40.0%
GCAAGTTGCAACCACTAAAA+TGG + chr5_2:8754061-8754080 Msa0755000:intron 40.0%
! AGGTCCCATATCCATTTTAG+TGG - chr5_2:8754075-8754094 None:intergenic 40.0%
ATCTCTTGTAGGAAGAGATG+AGG - chr5_2:8748746-8748765 None:intergenic 40.0%
!! TTCCTATTTTGGGAAACTCC+AGG + chr5_2:8748765-8748784 Msa0755000:intron 40.0%
TACCTGGAGTTTCCCAAAAT+AGG - chr5_2:8748770-8748789 None:intergenic 40.0%
GGCTAATGTTAAGAAGGAAG+AGG + chr5_2:8748941-8748960 Msa0755000:intron 40.0%
!! ATGTCTTTGGCTTTATCAGC+TGG - chr5_2:8749026-8749045 None:intergenic 40.0%
GGAAAAGTCCATGATGTCTT+TGG - chr5_2:8749039-8749058 None:intergenic 40.0%
! ATCATGGACTTTTCCACCAA+AGG + chr5_2:8754640-8754659 Msa0755000:CDS 40.0%
AGTGAAGCTTTCCTTGTCAT+TGG - chr5_2:8754902-8754921 None:intergenic 40.0%
CAAGGAAAGCTTCACTTCAT+CGG + chr5_2:8754906-8754925 Msa0755000:CDS 40.0%
!! TTCATCGGTTCTTGGAGAAA+AGG + chr5_2:8749310-8749329 Msa0755000:intron 40.0%
TCTTGGAGAAAAGGAAGGAT+AGG + chr5_2:8749319-8749338 Msa0755000:intron 40.0%
CGCCTTAAAGGTAGAGAATT+TGG + chr5_2:8755402-8755421 Msa0755000:three_prime_UTR 40.0%
GACATGACTCTTTGTATCCT+CGG - chr5_2:8755601-8755620 None:intergenic 40.0%
TTTCTGCAGAATTGCTGCAA+GGG + chr5_2:8755754-8755773 Msa0755000:three_prime_UTR 40.0%
GACTTATTTAGGAATGCTGC+TGG - chr5_2:8755800-8755819 None:intergenic 40.0%
TCGACATAAGAATGATACCG+AGG - chr5_2:8756081-8756100 None:intergenic 40.0%
AGTGAAGCTTTCCTCGTCAT+TGG - chr5_2:8749291-8749310 None:intergenic 45.0%
CGAGGAAAGCTTCACTTCAT+CGG + chr5_2:8749295-8749314 Msa0755000:intron 45.0%
!! AGCTTCACTTCATCGGTTCT+TGG + chr5_2:8749302-8749321 Msa0755000:intron 45.0%
TCGGTTCTTGGAGAAAAGGA+AGG + chr5_2:8749314-8749333 Msa0755000:intron 45.0%
ATCCATGACATGGCTCTCTT+TGG + chr5_2:8749821-8749840 Msa0755000:intron 45.0%
CCGTTGTAGTATAGTTGGTC+AGG + chr5_2:8750597-8750616 Msa0755000:intron 45.0%
AAAACCCACAAAGATGCTCG+AGG + chr5_2:8751270-8751289 Msa0755000:intron 45.0%
GAGGGTCAAGTATCTATCGA+AGG - chr5_2:8752098-8752117 None:intergenic 45.0%
TAGATACTTGACCCTCCTTG+AGG + chr5_2:8752102-8752121 Msa0755000:intron 45.0%
TGCAACATGTGGCAAGTTTG+CGG - chr5_2:8752267-8752286 None:intergenic 45.0%
! CTAAGGCATCAACTCTTCCT+GGG + chr5_2:8752627-8752646 Msa0755000:intron 45.0%
! TGTTTGCACTTTTGCATCCC+AGG - chr5_2:8752647-8752666 None:intergenic 45.0%
! GGGATGCAAAAGTGCAAACA+TGG + chr5_2:8752647-8752666 Msa0755000:intron 45.0%
CAGATTGTCGAGGTCAATCA+TGG - chr5_2:8753685-8753704 None:intergenic 45.0%
TTGCCTAGATCACTTGGACA+AGG - chr5_2:8753967-8753986 None:intergenic 45.0%
!! TGAGACAGAAGTGTTGGGAT+GGG - chr5_2:8754098-8754117 None:intergenic 45.0%
!! TTGAGACAGAAGTGTTGGGA+TGG - chr5_2:8754099-8754118 None:intergenic 45.0%
!! AGGGTGCTTGATTTGTGTCA+TGG + chr5_2:8749208-8749227 Msa0755000:intron 45.0%
!! AGCTTCACTTCATCGGTTCT+TGG + chr5_2:8749302-8749321 Msa0755000:intron 45.0%
TCGGTTCTTGGAGAAAAGGA+AGG + chr5_2:8749314-8749333 Msa0755000:intron 45.0%
TTGATTGAGAGAGATCTGGC+TGG - chr5_2:8754960-8754979 None:intergenic 45.0%
!! ACGGGAGGGAGTTCTAAAAT+TGG - chr5_2:8755229-8755248 None:intergenic 45.0%
!! GGCTCCTTCACTTTTGTTCA+TGG - chr5_2:8755633-8755652 None:intergenic 45.0%
GTTTCTGCAGAATTGCTGCA+AGG + chr5_2:8755753-8755772 Msa0755000:three_prime_UTR 45.0%
ATCCATGTCATGGCTATCCT+TGG + chr5_2:8755829-8755848 Msa0755000:three_prime_UTR 45.0%
GATTTGTGTTGCGGTGAATG+TGG - chr5_2:8755857-8755876 None:intergenic 45.0%
!!! TTTTTTTTATTTATTTTTTG+AGG + chr5_2:8751294-8751313 Msa0755000:intron 5.0%
!!! TTCTTTTTTTTTTTAAATAA+AGG + chr5_2:8751352-8751371 Msa0755000:intron 5.0%
!!! TCTTTTTTTTTTTAAATAAA+GGG + chr5_2:8751353-8751372 Msa0755000:intron 5.0%
!!! TTAGAAAAATATATTTTTAA+AGG + chr5_2:8753135-8753154 Msa0755000:intron 5.0%
CTTCTGCAGAATTGCAGCCA+GGG + chr5_2:8749749-8749768 Msa0755000:intron 50.0%
GCTTGTTTGATATGGTGCCC+TGG - chr5_2:8749769-8749788 None:intergenic 50.0%
TGCCAAAGAGAGCCATGTCA+TGG - chr5_2:8749826-8749845 None:intergenic 50.0%
GACTTGAACCCAGGTCTTTC+GGG - chr5_2:8750637-8750656 None:intergenic 50.0%
GGACTTGAACCCAGGTCTTT+CGG - chr5_2:8750638-8750657 None:intergenic 50.0%
AAAGACCTGGGTTCAAGTCC+CGG + chr5_2:8750638-8750657 Msa0755000:intron 50.0%
GGTGAAATGTGGCCCTTCTT+AGG - chr5_2:8752300-8752319 None:intergenic 50.0%
! GCTAAGGCATCAACTCTTCC+TGG + chr5_2:8752626-8752645 Msa0755000:intron 50.0%
TATTTATCAGGGCCGGCCTA+AGG + chr5_2:8752905-8752924 Msa0755000:intron 50.0%
! TGTATCCTCGGCTCGACTTT+AGG - chr5_2:8755589-8755608 None:intergenic 50.0%
TGCCAAGGATAGCCATGACA+TGG - chr5_2:8755834-8755853 None:intergenic 50.0%
GCTTCTGCAGAATTGCAGCC+AGG + chr5_2:8749748-8749767 Msa0755000:intron 55.0%
GGATCTCACCCGAAAGACCT+GGG + chr5_2:8750626-8750645 Msa0755000:intron 55.0%
AATCCCCTGGGTTCAAGTCC+CGG + chr5_2:8750697-8750716 Msa0755000:intron 55.0%
ACTTGAACCCGGGTCTTTGG+GGG - chr5_2:8750785-8750804 None:intergenic 55.0%
GACTTGAACCCGGGTCTTTG+GGG - chr5_2:8750786-8750805 None:intergenic 55.0%
GGACTTGAACCCGGGTCTTT+GGG - chr5_2:8750787-8750806 None:intergenic 55.0%
AAAGACCCGGGTTCAAGTCC+CGG + chr5_2:8750787-8750806 Msa0755000:intron 55.0%
ACTTGAACCCGGGTCTTTCG+GGG - chr5_2:8750906-8750925 None:intergenic 55.0%
GACTTGAACCCGGGTCTTTC+GGG - chr5_2:8750907-8750926 None:intergenic 55.0%
GGACTTGAACCCGGGTCTTT+CGG - chr5_2:8750787-8750806 None:intergenic 55.0%
AAAGACCCGGGTTCAAGTCC+CGG + chr5_2:8750787-8750806 Msa0755000:intron 55.0%
ACTTGAACCCGGGTCTTTCG+GGG - chr5_2:8750906-8750925 None:intergenic 55.0%
GACTTGAACCCGGGTCTTTC+GGG - chr5_2:8750907-8750926 None:intergenic 55.0%
GGACTTGAACCCGGGTCTTT+CGG - chr5_2:8750787-8750806 None:intergenic 55.0%
AAAGACCCGGGTTCAAGTCC+CGG + chr5_2:8750787-8750806 Msa0755000:intron 55.0%
ACTTGAACCCGGGTCTTTCG+GGG - chr5_2:8750906-8750925 None:intergenic 55.0%
GACTTGAACCCGGGTCTTTC+GGG - chr5_2:8750907-8750926 None:intergenic 55.0%
GGACTTGAACCCGGGTCTTT+CGG - chr5_2:8750787-8750806 None:intergenic 55.0%
AAAGACCCGGGTTCAAGTCC+CGG + chr5_2:8750787-8750806 Msa0755000:intron 55.0%
GGCAAGTTTGCGGTATACCG+TGG - chr5_2:8752257-8752276 None:intergenic 55.0%
! GCTTGGGTTGCTTGGTCCTT+AGG - chr5_2:8752924-8752943 None:intergenic 55.0%
AGGACCAAGCAACCCAAGCA+AGG + chr5_2:8752925-8752944 Msa0755000:intron 55.0%
GGACCAAGCAACCCAAGCAA+GGG + chr5_2:8752926-8752945 Msa0755000:intron 55.0%
! AAGCCCTTGCTTGGGTTGCT+TGG - chr5_2:8752932-8752951 None:intergenic 55.0%
GCAACCCAAGCAAGGGCTTT+AGG + chr5_2:8752933-8752952 Msa0755000:intron 55.0%
GAGGCCTAAAGCCCTTGCTT+GGG - chr5_2:8752940-8752959 None:intergenic 55.0%
TGAGGCCTAAAGCCCTTGCT+TGG - chr5_2:8752941-8752960 None:intergenic 55.0%
!! GGCCTCTTAATCTCTAGGGC+CGG + chr5_2:8753180-8753199 Msa0755000:intron 55.0%
!! GACAGAAGTGTTGGGATGGG+AGG - chr5_2:8754095-8754114 None:intergenic 55.0%
CTCATCCTAAAGTCGAGCCG+AGG + chr5_2:8755581-8755600 Msa0755000:three_prime_UTR 55.0%
! TTGCGGTGAATGTGGTGCCA+AGG - chr5_2:8755849-8755868 None:intergenic 55.0%
CGGATCTCACCCGAAAGACC+TGG + chr5_2:8750625-8750644 Msa0755000:intron 60.0%
CTGGGTTCAAGTCCCGGCAA+CGG + chr5_2:8750644-8750663 Msa0755000:intron 60.0%
TTGCCGGGACTTGAACCCAG+GGG - chr5_2:8750644-8750663 None:intergenic 60.0%
GTTGCCGGGACTTGAACCCA+GGG - chr5_2:8750645-8750664 None:intergenic 60.0%
CTGGGTTCAAGTCCCGGCAA+CGG + chr5_2:8750644-8750663 Msa0755000:intron 60.0%
! TTGAACCCGGGTCTTTGGGG+GGG - chr5_2:8750783-8750802 None:intergenic 60.0%
CTTGAACCCGGGTCTTTGGG+GGG - chr5_2:8750784-8750803 None:intergenic 60.0%
GGGACTTGAACCCGGGTCTT+TGG - chr5_2:8750788-8750807 None:intergenic 60.0%
CACTAACCCCCCGAAAGACC+CGG + chr5_2:8750895-8750914 Msa0755000:intron 60.0%
ACTAACCCCCCGAAAGACCC+GGG + chr5_2:8750896-8750915 Msa0755000:intron 60.0%
TTGAACCCGGGTCTTTCGGG+GGG - chr5_2:8750904-8750923 None:intergenic 60.0%
CTTGAACCCGGGTCTTTCGG+GGG - chr5_2:8750905-8750924 None:intergenic 60.0%
CACTAACCCCCCGAAAGACC+CGG + chr5_2:8750895-8750914 Msa0755000:intron 60.0%
ACTAACCCCCCGAAAGACCC+GGG + chr5_2:8750896-8750915 Msa0755000:intron 60.0%
TTGAACCCGGGTCTTTCGGG+GGG - chr5_2:8750904-8750923 None:intergenic 60.0%
CTTGAACCCGGGTCTTTCGG+GGG - chr5_2:8750905-8750924 None:intergenic 60.0%
CACTAACCCCCCGAAAGACC+CGG + chr5_2:8750895-8750914 Msa0755000:intron 60.0%
ACTAACCCCCCGAAAGACCC+GGG + chr5_2:8750896-8750915 Msa0755000:intron 60.0%
TTGAACCCGGGTCTTTCGGG+GGG - chr5_2:8750904-8750923 None:intergenic 60.0%
CTTGAACCCGGGTCTTTCGG+GGG - chr5_2:8750905-8750924 None:intergenic 60.0%
GGTGGGGAGTCGGTGAAATG+TGG - chr5_2:8752311-8752330 None:intergenic 60.0%
!! ATTTCACCGACTCCCCACCG+AGG + chr5_2:8752312-8752331 Msa0755000:intron 60.0%
ACGATACCTCGGTGGGGAGT+CGG - chr5_2:8752321-8752340 None:intergenic 60.0%
TCCACCGCCAGACGATACCT+CGG - chr5_2:8752332-8752351 None:intergenic 60.0%
GGGTTGCTTGGTCCTTAGGC+CGG - chr5_2:8752920-8752939 None:intergenic 60.0%
GGCCGGCCCTAGAGATTAAG+AGG - chr5_2:8753185-8753204 None:intergenic 60.0%
CGTTGCCGGGACTTGAACCC+AGG - chr5_2:8750646-8750665 None:intergenic 65.0%
CGTTGCCGGGACTTGAACCC+AGG - chr5_2:8750646-8750665 None:intergenic 65.0%
! TGAACCCGGGTCTTTGGGGG+GGG - chr5_2:8750782-8750801 None:intergenic 65.0%
CGTTGCCGGGACTTGAACCC+GGG - chr5_2:8750646-8750665 None:intergenic 65.0%
CCGTTGCCGGGACTTGAACC+CGG - chr5_2:8750647-8750666 None:intergenic 65.0%
CCGGGTTCAAGTCCCGGCAA+CGG + chr5_2:8750793-8750812 Msa0755000:intron 65.0%
CGTTGCCGGGACTTGAACCC+GGG - chr5_2:8750646-8750665 None:intergenic 65.0%
CCGTTGCCGGGACTTGAACC+CGG - chr5_2:8750647-8750666 None:intergenic 65.0%
CCGGGTTCAAGTCCCGGCAA+CGG + chr5_2:8750793-8750812 Msa0755000:intron 65.0%
CGTTGCCGGGACTTGAACCC+GGG - chr5_2:8750646-8750665 None:intergenic 65.0%
CCGTTGCCGGGACTTGAACC+CGG - chr5_2:8750647-8750666 None:intergenic 65.0%
CCGGGTTCAAGTCCCGGCAA+CGG + chr5_2:8750793-8750812 Msa0755000:intron 65.0%
CGTTGCCGGGACTTGAACCC+GGG - chr5_2:8750646-8750665 None:intergenic 65.0%
CCGTTGCCGGGACTTGAACC+CGG - chr5_2:8750647-8750666 None:intergenic 65.0%
CCGGGTTCAAGTCCCGGCAA+CGG + chr5_2:8750793-8750812 Msa0755000:intron 65.0%
!! CTCCCCACCGAGGTATCGTC+TGG + chr5_2:8752322-8752341 Msa0755000:intron 65.0%
CGCCAGACGATACCTCGGTG+GGG - chr5_2:8752327-8752346 None:intergenic 65.0%
CCGCCAGACGATACCTCGGT+GGG - chr5_2:8752328-8752347 None:intergenic 65.0%
!! CCCACCGAGGTATCGTCTGG+CGG + chr5_2:8752325-8752344 Msa0755000:intron 65.0%
ACCGCCAGACGATACCTCGG+TGG - chr5_2:8752329-8752348 None:intergenic 65.0%
!! ACCGAGGTATCGTCTGGCGG+TGG + chr5_2:8752328-8752347 Msa0755000:intron 65.0%
!! GAGGTATCGTCTGGCGGTGG+AGG + chr5_2:8752331-8752350 Msa0755000:intron 65.0%
! AACCCGGGTCTTTGGGGGGG+GGG - chr5_2:8750780-8750799 None:intergenic 70.0%
! GAACCCGGGTCTTTGGGGGG+GGG - chr5_2:8750781-8750800 None:intergenic 70.0%
! ACCCGGGTCTTTGGGGGGGG+GGG - chr5_2:8750779-8750798 None:intergenic 75.0%
!! TCTTTGGGGGGGGGGGGGGG+GGG - chr5_2:8750772-8750791 None:intergenic 80.0%
!! GTCTTTGGGGGGGGGGGGGG+GGG - chr5_2:8750773-8750792 None:intergenic 80.0%
!! GGTCTTTGGGGGGGGGGGGG+GGG - chr5_2:8750774-8750793 None:intergenic 80.0%
!! GGGTCTTTGGGGGGGGGGGG+GGG - chr5_2:8750775-8750794 None:intergenic 80.0%
!! CGGGTCTTTGGGGGGGGGGG+GGG - chr5_2:8750776-8750795 None:intergenic 80.0%
!! CCGGGTCTTTGGGGGGGGGG+GGG - chr5_2:8750777-8750796 None:intergenic 80.0%
! CCCCCCCCCCCCCAAAGACC+CGG + chr5_2:8750774-8750793 Msa0755000:intron 80.0%
!! CCCGGGTCTTTGGGGGGGGG+GGG - chr5_2:8750778-8750797 None:intergenic 80.0%
! CCCCCCCCCCCCAAAGACCC+GGG + chr5_2:8750775-8750794 Msa0755000:intron 80.0%
! TTTGGGGGGGGGGGGGGGGG+GGG - chr5_2:8750770-8750789 None:intergenic 85.0%
!! CTTTGGGGGGGGGGGGGGGG+GGG - chr5_2:8750771-8750790 None:intergenic 85.0%
! TTGGGGGGGGGGGGGGGGGG+GGG - chr5_2:8750769-8750788 None:intergenic 90.0%
! GGGGGGGGGGGGGGGGGGGT+GGG - chr5_2:8750762-8750781 None:intergenic 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - chr5_2:8750768-8750787 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 8748643 8756110 8748643 ID=Msa0755000;Name=Msa0755000
chr5_2 mRNA 8748643 8756110 8748643 ID=Msa0755000-mRNA-1;Parent=Msa0755000;Name=Msa0755000-mRNA-1;_AED=0.27;_eAED=0.27;_QI=47|0.66|0.75|1|0.66|0.5|4|1155|96
chr5_2 exon 8748643 8748655 8748643 ID=Msa0755000-mRNA-1:exon:3960;Parent=Msa0755000-mRNA-1
chr5_2 exon 8754264 8754383 8754264 ID=Msa0755000-mRNA-1:exon:3961;Parent=Msa0755000-mRNA-1
chr5_2 exon 8754528 8754670 8754528 ID=Msa0755000-mRNA-1:exon:3962;Parent=Msa0755000-mRNA-1
chr5_2 exon 8754894 8756110 8754894 ID=Msa0755000-mRNA-1:exon:3963;Parent=Msa0755000-mRNA-1
chr5_2 five_prime_UTR 8748643 8748655 8748643 ID=Msa0755000-mRNA-1:five_prime_utr;Parent=Msa0755000-mRNA-1
chr5_2 five_prime_UTR 8754264 8754297 8754264 ID=Msa0755000-mRNA-1:five_prime_utr;Parent=Msa0755000-mRNA-1
chr5_2 CDS 8754298 8754383 8754298 ID=Msa0755000-mRNA-1:cds;Parent=Msa0755000-mRNA-1
chr5_2 CDS 8754528 8754670 8754528 ID=Msa0755000-mRNA-1:cds;Parent=Msa0755000-mRNA-1
chr5_2 CDS 8754894 8754955 8754894 ID=Msa0755000-mRNA-1:cds;Parent=Msa0755000-mRNA-1
chr5_2 three_prime_UTR 8754956 8756110 8754956 ID=Msa0755000-mRNA-1:three_prime_utr;Parent=Msa0755000-mRNA-1
Gene Sequence

>Msa0755000

ATGAATCATCACAACATAACACCTATGAATTTTCAACAGCTTCCTCATCTCTTCCTACAAGAGATTCCTATTTTGGGAAACTCCAGTGTAATGAAGGCTAATGTTAAGAAGGAAGAGGCTAGATGTGCACAAATGACAATCTTCTATGATGGGAAAGTAATTGTGTTTGATGATGTTCCAGCTGATAAAGCCAAAGACATCATGGACTTTTCCACCAAAGGAATTACTAATTTACCAATGACAAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGGAAGGATAGGTAA
Protein sequence

>Msa0755000

MNHHNITPMNFQQLPHLFLQEIPILGNSSVMKANVKKEEARCAQMTIFYDGKVIVFDDVPADKAKDIMDFSTKGITNLPMTRKASLHRFLEKRKDR*