Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0755650 | ADI60287.1 | 98.824 | 255 | 2 | 1 | 1 | 255 | 1 | 254 | 0.0 | 514 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0755650 | sp|O80942|ZFP10_ARATH | 57.303 | 89 | 26 | 3 | 45 | 129 | 7 | 87 | 4.60e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0755650 | D7R6G4 | 98.824 | 255 | 2 | 1 | 1 | 255 | 1 | 254 | 0.0 | 514 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0755650 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0710880 | Msa0755650 | 0.908070 | 2.552600e-81 | -8.615850e-47 |
| Msa0755650 | Msa0755690 | 0.956135 | 6.012154e-114 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0755650 | MtrunA17_Chr5g0400571 | 95.294 | 255 | 8 | 2 | 1 | 255 | 1 | 251 | 6.69e-179 | 491 |
| Msa0755650 | MtrunA17_Chr5g0435711 | 36.250 | 240 | 113 | 11 | 38 | 251 | 4 | 229 | 1.49e-27 | 105 |
| Msa0755650 | MtrunA17_Chr4g0009461 | 38.378 | 185 | 79 | 7 | 61 | 215 | 35 | 214 | 1.38e-24 | 99.8 |
| Msa0755650 | MtrunA17_Chr3g0112181 | 73.684 | 57 | 14 | 1 | 62 | 117 | 33 | 89 | 3.30e-24 | 97.8 |
| Msa0755650 | MtrunA17_Chr2g0315591 | 87.805 | 41 | 5 | 0 | 80 | 120 | 47 | 87 | 9.58e-22 | 90.1 |
| Msa0755650 | MtrunA17_Chr1g0184381 | 80.000 | 40 | 8 | 0 | 78 | 117 | 30 | 69 | 5.10e-18 | 79.3 |
| Msa0755650 | MtrunA17_Chr7g0239441 | 76.471 | 34 | 8 | 0 | 83 | 116 | 37 | 70 | 1.30e-13 | 66.6 |
| Msa0755650 | MtrunA17_Chr4g0032111 | 32.749 | 171 | 85 | 4 | 82 | 252 | 20 | 160 | 2.51e-13 | 66.2 |
| Msa0755650 | MtrunA17_Chr1g0184331 | 45.070 | 71 | 35 | 1 | 83 | 153 | 38 | 104 | 2.06e-12 | 63.2 |
| Msa0755650 | MtrunA17_Chr1g0187231 | 31.551 | 187 | 88 | 9 | 83 | 249 | 18 | 184 | 3.37e-12 | 63.5 |
| Msa0755650 | MtrunA17_Chr1g0168181 | 37.931 | 87 | 36 | 2 | 58 | 135 | 10 | 87 | 8.32e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0755650 | AT4G17810.1 | 42.544 | 228 | 88 | 9 | 41 | 252 | 3 | 203 | 6.02e-43 | 145 |
| Msa0755650 | AT4G17810.2 | 40.724 | 221 | 72 | 11 | 41 | 252 | 3 | 173 | 2.52e-36 | 127 |
| Msa0755650 | AT2G37740.1 | 57.303 | 89 | 26 | 3 | 45 | 129 | 7 | 87 | 4.67e-25 | 101 |
| Msa0755650 | AT5G06070.1 | 36.493 | 211 | 92 | 8 | 64 | 252 | 32 | 222 | 2.39e-23 | 95.1 |
| Msa0755650 | AT2G42410.2 | 34.667 | 225 | 93 | 8 | 53 | 249 | 14 | 212 | 2.55e-20 | 86.7 |
| Msa0755650 | AT2G42410.1 | 34.667 | 225 | 93 | 8 | 53 | 249 | 14 | 212 | 2.55e-20 | 86.7 |
| Msa0755650 | AT2G42410.3 | 34.667 | 225 | 93 | 8 | 53 | 249 | 40 | 238 | 4.56e-20 | 86.7 |
| Msa0755650 | AT3G23130.1 | 71.429 | 49 | 14 | 0 | 70 | 118 | 32 | 80 | 9.40e-20 | 84.7 |
| Msa0755650 | AT3G09290.1 | 73.529 | 34 | 9 | 0 | 83 | 116 | 33 | 66 | 6.82e-13 | 65.5 |
Find 60 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAAGCATTATTATTATT+AGG | 0.154031 | 5_2:+9486747 | None:intergenic |
| TATTATTAGGGTTTGGTAAA+TGG | 0.178618 | 5_2:+9486760 | None:intergenic |
| GTTGTAGTGGTGTTGGAGTT+AGG | 0.193934 | 5_2:+9487119 | None:intergenic |
| ATTTGCATCATCAAACTATT+TGG | 0.207164 | 5_2:+9486648 | None:intergenic |
| TGTTGCTGTTGATGTTGTTT+AGG | 0.258496 | 5_2:+9487062 | None:intergenic |
| CAAAAGCATTATTATTATTA+GGG | 0.268434 | 5_2:+9486748 | None:intergenic |
| GTTGCTGTTGATGTTGTTTA+GGG | 0.279368 | 5_2:+9487063 | None:intergenic |
| TTGTAGTGGTGTTGGAGTTA+GGG | 0.287569 | 5_2:+9487120 | None:intergenic |
| TTAACGGTGGTTGGCTTTGA+TGG | 0.294750 | 5_2:+9486862 | None:intergenic |
| CTTGATCTTGAGCTCCGTTT+AGG | 0.296503 | 5_2:-9486480 | Msa0755650:CDS |
| TACAATAGTTCTAGTCCTAA+TGG | 0.356996 | 5_2:-9486720 | Msa0755650:CDS |
| TTGATCTTGAGCTCCGTTTA+GGG | 0.364351 | 5_2:-9486479 | Msa0755650:CDS |
| AGTACCATGGCTACAGATAT+TGG | 0.374674 | 5_2:-9487209 | None:intergenic |
| GAGATTGAGAGAAAAGTAGA+AGG | 0.386084 | 5_2:+9486690 | None:intergenic |
| GTAGAAGGAGATTCTCCATT+AGG | 0.392764 | 5_2:+9486705 | None:intergenic |
| TTCATGACCGTTATCATCAA+TGG | 0.401936 | 5_2:+9486512 | None:intergenic |
| GCATTATTATTATTAGGGTT+TGG | 0.403821 | 5_2:+9486753 | None:intergenic |
| TGTTGGAGTTAGGGTTTGGT+TGG | 0.408721 | 5_2:+9487129 | None:intergenic |
| AACAAGAAGATGAAGATTCA+TGG | 0.412727 | 5_2:-9487037 | Msa0755650:CDS |
| CAAGAGCTTGTTGCTAATGC+TGG | 0.417258 | 5_2:-9486798 | Msa0755650:CDS |
| GTGTTGGCTTGTTCCCTAAA+CGG | 0.435644 | 5_2:+9486466 | None:intergenic |
| GTGGTGTTGGAGTTAGGGTT+TGG | 0.437650 | 5_2:+9487125 | None:intergenic |
| TCCACTTGAAAATTAAAAGA+TGG | 0.441538 | 5_2:+9486612 | None:intergenic |
| TGAAGGGGTTGTAGTGGTGT+TGG | 0.446031 | 5_2:+9487112 | None:intergenic |
| ATTAGGACTAGAACTATTGT+AGG | 0.449818 | 5_2:+9486722 | None:intergenic |
| ATGAAGATTCATGGGAGGTA+AGG | 0.450992 | 5_2:-9487028 | Msa0755650:CDS |
| TTCCGGTCAGCTCAAGCTCT+TGG | 0.471669 | 5_2:-9486924 | Msa0755650:CDS |
| GAGATGAATTTAACGGTGGT+TGG | 0.484111 | 5_2:+9486853 | None:intergenic |
| TGCATCATCAAACTATTTGG+TGG | 0.502100 | 5_2:+9486651 | None:intergenic |
| GGTTTGGTAAATGGTAAAGA+AGG | 0.506848 | 5_2:+9486769 | None:intergenic |
| CTTCACCATCATCATCAACT+TGG | 0.509068 | 5_2:-9487094 | Msa0755650:CDS |
| CGGTCAGCTCAAGCTCTTGG+TGG | 0.515963 | 5_2:-9486921 | Msa0755650:CDS |
| GATGGAGACGAGCACGGTCG+CGG | 0.516231 | 5_2:+9486880 | None:intergenic |
| ACAAGAAGATGAAGATTCAT+GGG | 0.528846 | 5_2:-9487036 | Msa0755650:CDS |
| CACCAAGAGCTTGAGCTGAC+CGG | 0.533757 | 5_2:+9486922 | None:intergenic |
| TGAAGATTCATGGGAGGTAA+GGG | 0.539677 | 5_2:-9487027 | Msa0755650:CDS |
| TGTGGAGGAATATTTATGAA+TGG | 0.545539 | 5_2:+9486819 | None:intergenic |
| GAAGGATGAGATGAATTTAA+CGG | 0.547030 | 5_2:+9486846 | None:intergenic |
| AGGTGCAAGTAGCATGTTGA+TGG | 0.551205 | 5_2:+9486535 | None:intergenic |
| CACATCCAAGTTGATGATGA+TGG | 0.567674 | 5_2:+9487089 | None:intergenic |
| TGCACCTCCATTGATGATAA+CGG | 0.570866 | 5_2:-9486519 | Msa0755650:CDS |
| AAAGCCAATATCTGTAGCCA+TGG | 0.572452 | 5_2:+9487205 | None:intergenic |
| GCATTAGCAACAAGCTCTTG+TGG | 0.586992 | 5_2:+9486801 | None:intergenic |
| GGCTTTGATGGAGACGAGCA+CGG | 0.589738 | 5_2:+9486874 | None:intergenic |
| CATCATCATCAACTTGGATG+TGG | 0.591753 | 5_2:-9487088 | Msa0755650:CDS |
| ATATTTATGAATGGTGATGA+AGG | 0.596989 | 5_2:+9486828 | None:intergenic |
| GTGCAGGTATAGGACCTTGG+TGG | 0.606792 | 5_2:+9486963 | None:intergenic |
| TGATGGTGAAGGGGTTGTAG+TGG | 0.613406 | 5_2:+9487106 | None:intergenic |
| AAAGTGCAGGTATAGGACCT+TGG | 0.620732 | 5_2:+9486960 | None:intergenic |
| TTCAAGTGGATAATTCAGCT+AGG | 0.628424 | 5_2:-9486599 | Msa0755650:CDS |
| CAAGTTGATGATGATGGTGA+AGG | 0.632187 | 5_2:+9487095 | None:intergenic |
| AAGTTGATGATGATGGTGAA+GGG | 0.633965 | 5_2:+9487096 | None:intergenic |
| ATGACCGTTATCATCAATGG+AGG | 0.643461 | 5_2:+9486515 | None:intergenic |
| TGAACACAACATGGCCACCA+AGG | 0.646071 | 5_2:-9486977 | Msa0755650:CDS |
| GGAGACGAGCACGGTCGCGG+CGG | 0.650175 | 5_2:+9486883 | None:intergenic |
| AGAAGATGAAGATTCATGGG+AGG | 0.682315 | 5_2:-9487033 | Msa0755650:CDS |
| AGTTGATGATGATGGTGAAG+GGG | 0.689572 | 5_2:+9487097 | None:intergenic |
| TTAGCAACAAGCTCTTGTGG+AGG | 0.690594 | 5_2:+9486804 | None:intergenic |
| GGAATATTATGAACACAACA+TGG | 0.697427 | 5_2:-9486986 | Msa0755650:CDS |
| GGATGAGATGAATTTAACGG+TGG | 0.714956 | 5_2:+9486849 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAAGCATTATTATTATTA+GGG | + | chr5_2:9486916-9486935 | None:intergenic | 15.0% |
| !!! | CAAAAGCATTATTATTATTA+GGG | + | chr5_2:9486916-9486935 | None:intergenic | 15.0% |
| !!! | GCAAAAGCATTATTATTATT+AGG | + | chr5_2:9486917-9486936 | None:intergenic | 20.0% |
| !!! | GCAAAAGCATTATTATTATT+AGG | + | chr5_2:9486917-9486936 | None:intergenic | 20.0% |
| !! | ATTGTGATTGTGATGATTTT+TGG | + | chr5_2:9486502-9486521 | None:intergenic | 25.0% |
| !! | ATATTTATGAATGGTGATGA+AGG | + | chr5_2:9486836-9486855 | None:intergenic | 25.0% |
| !! | TATTATTAGGGTTTGGTAAA+TGG | + | chr5_2:9486904-9486923 | None:intergenic | 25.0% |
| ! | GCATTATTATTATTAGGGTT+TGG | + | chr5_2:9486911-9486930 | None:intergenic | 25.0% |
| ! | ATTTGCATCATCAAACTATT+TGG | + | chr5_2:9487016-9487035 | None:intergenic | 25.0% |
| !!! | TCCATCTTTTAATTTTCAAG+TGG | - | chr5_2:9487048-9487067 | Msa0755650:CDS | 25.0% |
| ! | TCCACTTGAAAATTAAAAGA+TGG | + | chr5_2:9487052-9487071 | None:intergenic | 25.0% |
| !! | ATTGTGATTGTGATGATTTT+TGG | + | chr5_2:9486502-9486521 | None:intergenic | 25.0% |
| !! | ATATTTATGAATGGTGATGA+AGG | + | chr5_2:9486836-9486855 | None:intergenic | 25.0% |
| !! | TATTATTAGGGTTTGGTAAA+TGG | + | chr5_2:9486904-9486923 | None:intergenic | 25.0% |
| ! | GCATTATTATTATTAGGGTT+TGG | + | chr5_2:9486911-9486930 | None:intergenic | 25.0% |
| ! | ATTTGCATCATCAAACTATT+TGG | + | chr5_2:9487016-9487035 | None:intergenic | 25.0% |
| !!! | TCCATCTTTTAATTTTCAAG+TGG | - | chr5_2:9487048-9487067 | Msa0755650:CDS | 25.0% |
| ! | TCCACTTGAAAATTAAAAGA+TGG | + | chr5_2:9487052-9487071 | None:intergenic | 25.0% |
| ! | TTTTTGGATCTGAGTCATAT+TGG | + | chr5_2:9486486-9486505 | None:intergenic | 30.0% |
| AACAAGAAGATGAAGATTCA+TGG | - | chr5_2:9486624-9486643 | Msa0755650:CDS | 30.0% | |
| ACAAGAAGATGAAGATTCAT+GGG | - | chr5_2:9486625-9486644 | Msa0755650:CDS | 30.0% | |
| GGAATATTATGAACACAACA+TGG | - | chr5_2:9486675-9486694 | Msa0755650:CDS | 30.0% | |
| GAAGGATGAGATGAATTTAA+CGG | + | chr5_2:9486818-9486837 | None:intergenic | 30.0% | |
| TGTGGAGGAATATTTATGAA+TGG | + | chr5_2:9486845-9486864 | None:intergenic | 30.0% | |
| ATTAGGACTAGAACTATTGT+AGG | + | chr5_2:9486942-9486961 | None:intergenic | 30.0% | |
| !! | TACAATAGTTCTAGTCCTAA+TGG | - | chr5_2:9486941-9486960 | Msa0755650:CDS | 30.0% |
| !! | TTCTTCTTTTTCTAGCAAAG+TGG | - | chr5_2:9487102-9487121 | Msa0755650:CDS | 30.0% |
| ! | TTTTTGGATCTGAGTCATAT+TGG | + | chr5_2:9486486-9486505 | None:intergenic | 30.0% |
| AACAAGAAGATGAAGATTCA+TGG | - | chr5_2:9486624-9486643 | Msa0755650:CDS | 30.0% | |
| ACAAGAAGATGAAGATTCAT+GGG | - | chr5_2:9486625-9486644 | Msa0755650:CDS | 30.0% | |
| GGAATATTATGAACACAACA+TGG | - | chr5_2:9486675-9486694 | Msa0755650:CDS | 30.0% | |
| GAAGGATGAGATGAATTTAA+CGG | + | chr5_2:9486818-9486837 | None:intergenic | 30.0% | |
| TGTGGAGGAATATTTATGAA+TGG | + | chr5_2:9486845-9486864 | None:intergenic | 30.0% | |
| ATTAGGACTAGAACTATTGT+AGG | + | chr5_2:9486942-9486961 | None:intergenic | 30.0% | |
| !! | TACAATAGTTCTAGTCCTAA+TGG | - | chr5_2:9486941-9486960 | Msa0755650:CDS | 30.0% |
| !! | TTCTTCTTTTTCTAGCAAAG+TGG | - | chr5_2:9487102-9487121 | Msa0755650:CDS | 30.0% |
| !! | AAGTTGATGATGATGGTGAA+GGG | + | chr5_2:9486568-9486587 | None:intergenic | 35.0% |
| ! | GTTGCTGTTGATGTTGTTTA+GGG | + | chr5_2:9486601-9486620 | None:intergenic | 35.0% |
| ! | TGTTGCTGTTGATGTTGTTT+AGG | + | chr5_2:9486602-9486621 | None:intergenic | 35.0% |
| ! | GGTTTGGTAAATGGTAAAGA+AGG | + | chr5_2:9486895-9486914 | None:intergenic | 35.0% |
| GAGATTGAGAGAAAAGTAGA+AGG | + | chr5_2:9486974-9486993 | None:intergenic | 35.0% | |
| TGCATCATCAAACTATTTGG+TGG | + | chr5_2:9487013-9487032 | None:intergenic | 35.0% | |
| TTCAAGTGGATAATTCAGCT+AGG | - | chr5_2:9487062-9487081 | Msa0755650:CDS | 35.0% | |
| TTCATGACCGTTATCATCAA+TGG | + | chr5_2:9487152-9487171 | None:intergenic | 35.0% | |
| !! | AAGTTGATGATGATGGTGAA+GGG | + | chr5_2:9486568-9486587 | None:intergenic | 35.0% |
| ! | GTTGCTGTTGATGTTGTTTA+GGG | + | chr5_2:9486601-9486620 | None:intergenic | 35.0% |
| ! | TGTTGCTGTTGATGTTGTTT+AGG | + | chr5_2:9486602-9486621 | None:intergenic | 35.0% |
| ! | GGTTTGGTAAATGGTAAAGA+AGG | + | chr5_2:9486895-9486914 | None:intergenic | 35.0% |
| GAGATTGAGAGAAAAGTAGA+AGG | + | chr5_2:9486974-9486993 | None:intergenic | 35.0% | |
| TGCATCATCAAACTATTTGG+TGG | + | chr5_2:9487013-9487032 | None:intergenic | 35.0% | |
| TTCAAGTGGATAATTCAGCT+AGG | - | chr5_2:9487062-9487081 | Msa0755650:CDS | 35.0% | |
| TTCATGACCGTTATCATCAA+TGG | + | chr5_2:9487152-9487171 | None:intergenic | 35.0% | |
| ! | TTGTAGTGGTGTTGGAGTTA+GGG | + | chr5_2:9486544-9486563 | None:intergenic | 40.0% |
| !! | AGTTGATGATGATGGTGAAG+GGG | + | chr5_2:9486567-9486586 | None:intergenic | 40.0% |
| !! | CAAGTTGATGATGATGGTGA+AGG | + | chr5_2:9486569-9486588 | None:intergenic | 40.0% |
| CTTCACCATCATCATCAACT+TGG | - | chr5_2:9486567-9486586 | Msa0755650:CDS | 40.0% | |
| !! | CACATCCAAGTTGATGATGA+TGG | + | chr5_2:9486575-9486594 | None:intergenic | 40.0% |
| CATCATCATCAACTTGGATG+TGG | - | chr5_2:9486573-9486592 | Msa0755650:CDS | 40.0% | |
| AGAAGATGAAGATTCATGGG+AGG | - | chr5_2:9486628-9486647 | Msa0755650:CDS | 40.0% | |
| ATGAAGATTCATGGGAGGTA+AGG | - | chr5_2:9486633-9486652 | Msa0755650:CDS | 40.0% | |
| TGAAGATTCATGGGAGGTAA+GGG | - | chr5_2:9486634-9486653 | Msa0755650:CDS | 40.0% | |
| ! | TCTGCAAAAAGTGCAGGTAT+AGG | + | chr5_2:9486711-9486730 | None:intergenic | 40.0% |
| ! | CTTTTTGCAGAAGAGAGTTC+CGG | - | chr5_2:9486720-9486739 | Msa0755650:CDS | 40.0% |
| GAGATGAATTTAACGGTGGT+TGG | + | chr5_2:9486811-9486830 | None:intergenic | 40.0% | |
| GGATGAGATGAATTTAACGG+TGG | + | chr5_2:9486815-9486834 | None:intergenic | 40.0% | |
| GTAGAAGGAGATTCTCCATT+AGG | + | chr5_2:9486959-9486978 | None:intergenic | 40.0% | |
| ! | TGCACCTCCATTGATGATAA+CGG | - | chr5_2:9487142-9487161 | Msa0755650:CDS | 40.0% |
| ATGACCGTTATCATCAATGG+AGG | + | chr5_2:9487149-9487168 | None:intergenic | 40.0% | |
| TTGATCTTGAGCTCCGTTTA+GGG | - | chr5_2:9487182-9487201 | Msa0755650:CDS | 40.0% | |
| ! | TTGTAGTGGTGTTGGAGTTA+GGG | + | chr5_2:9486544-9486563 | None:intergenic | 40.0% |
| !! | AGTTGATGATGATGGTGAAG+GGG | + | chr5_2:9486567-9486586 | None:intergenic | 40.0% |
| !! | CAAGTTGATGATGATGGTGA+AGG | + | chr5_2:9486569-9486588 | None:intergenic | 40.0% |
| CTTCACCATCATCATCAACT+TGG | - | chr5_2:9486567-9486586 | Msa0755650:CDS | 40.0% | |
| !! | CACATCCAAGTTGATGATGA+TGG | + | chr5_2:9486575-9486594 | None:intergenic | 40.0% |
| CATCATCATCAACTTGGATG+TGG | - | chr5_2:9486573-9486592 | Msa0755650:CDS | 40.0% | |
| AGAAGATGAAGATTCATGGG+AGG | - | chr5_2:9486628-9486647 | Msa0755650:CDS | 40.0% | |
| ATGAAGATTCATGGGAGGTA+AGG | - | chr5_2:9486633-9486652 | Msa0755650:CDS | 40.0% | |
| TGAAGATTCATGGGAGGTAA+GGG | - | chr5_2:9486634-9486653 | Msa0755650:CDS | 40.0% | |
| ! | TCTGCAAAAAGTGCAGGTAT+AGG | + | chr5_2:9486711-9486730 | None:intergenic | 40.0% |
| ! | CTTTTTGCAGAAGAGAGTTC+CGG | - | chr5_2:9486720-9486739 | Msa0755650:CDS | 40.0% |
| GAGATGAATTTAACGGTGGT+TGG | + | chr5_2:9486811-9486830 | None:intergenic | 40.0% | |
| GGATGAGATGAATTTAACGG+TGG | + | chr5_2:9486815-9486834 | None:intergenic | 40.0% | |
| GTAGAAGGAGATTCTCCATT+AGG | + | chr5_2:9486959-9486978 | None:intergenic | 40.0% | |
| ! | TGCACCTCCATTGATGATAA+CGG | - | chr5_2:9487142-9487161 | Msa0755650:CDS | 40.0% |
| ATGACCGTTATCATCAATGG+AGG | + | chr5_2:9487149-9487168 | None:intergenic | 40.0% | |
| TTGATCTTGAGCTCCGTTTA+GGG | - | chr5_2:9487182-9487201 | Msa0755650:CDS | 40.0% | |
| ! | TGTTGGAGTTAGGGTTTGGT+TGG | + | chr5_2:9486535-9486554 | None:intergenic | 45.0% |
| ! | GTTGTAGTGGTGTTGGAGTT+AGG | + | chr5_2:9486545-9486564 | None:intergenic | 45.0% |
| AAAGTGCAGGTATAGGACCT+TGG | + | chr5_2:9486704-9486723 | None:intergenic | 45.0% | |
| ! | CTCTCTTCTGCAAAAAGTGC+AGG | + | chr5_2:9486717-9486736 | None:intergenic | 45.0% |
| !! | TTAACGGTGGTTGGCTTTGA+TGG | + | chr5_2:9486802-9486821 | None:intergenic | 45.0% |
| TTAGCAACAAGCTCTTGTGG+AGG | + | chr5_2:9486860-9486879 | None:intergenic | 45.0% | |
| GCATTAGCAACAAGCTCTTG+TGG | + | chr5_2:9486863-9486882 | None:intergenic | 45.0% | |
| !! | CAAGAGCTTGTTGCTAATGC+TGG | - | chr5_2:9486863-9486882 | Msa0755650:CDS | 45.0% |
| AGGTGCAAGTAGCATGTTGA+TGG | + | chr5_2:9487129-9487148 | None:intergenic | 45.0% | |
| CTTGATCTTGAGCTCCGTTT+AGG | - | chr5_2:9487181-9487200 | Msa0755650:CDS | 45.0% | |
| !! | GTGTTGGCTTGTTCCCTAAA+CGG | + | chr5_2:9487198-9487217 | None:intergenic | 45.0% |
| ! | TGTTGGAGTTAGGGTTTGGT+TGG | + | chr5_2:9486535-9486554 | None:intergenic | 45.0% |
| ! | GTTGTAGTGGTGTTGGAGTT+AGG | + | chr5_2:9486545-9486564 | None:intergenic | 45.0% |
| AAAGTGCAGGTATAGGACCT+TGG | + | chr5_2:9486704-9486723 | None:intergenic | 45.0% | |
| ! | CTCTCTTCTGCAAAAAGTGC+AGG | + | chr5_2:9486717-9486736 | None:intergenic | 45.0% |
| !! | TTAACGGTGGTTGGCTTTGA+TGG | + | chr5_2:9486802-9486821 | None:intergenic | 45.0% |
| TTAGCAACAAGCTCTTGTGG+AGG | + | chr5_2:9486860-9486879 | None:intergenic | 45.0% | |
| GCATTAGCAACAAGCTCTTG+TGG | + | chr5_2:9486863-9486882 | None:intergenic | 45.0% | |
| !! | CAAGAGCTTGTTGCTAATGC+TGG | - | chr5_2:9486863-9486882 | Msa0755650:CDS | 45.0% |
| AGGTGCAAGTAGCATGTTGA+TGG | + | chr5_2:9487129-9487148 | None:intergenic | 45.0% | |
| CTTGATCTTGAGCTCCGTTT+AGG | - | chr5_2:9487181-9487200 | Msa0755650:CDS | 45.0% | |
| !! | GTGTTGGCTTGTTCCCTAAA+CGG | + | chr5_2:9487198-9487217 | None:intergenic | 45.0% |
| ! | GTGGTGTTGGAGTTAGGGTT+TGG | + | chr5_2:9486539-9486558 | None:intergenic | 50.0% |
| TGAAGGGGTTGTAGTGGTGT+TGG | + | chr5_2:9486552-9486571 | None:intergenic | 50.0% | |
| ! | TGATGGTGAAGGGGTTGTAG+TGG | + | chr5_2:9486558-9486577 | None:intergenic | 50.0% |
| ! | GGGCTTTTGCTGAAGACACA+AGG | - | chr5_2:9486654-9486673 | Msa0755650:CDS | 50.0% |
| TGAACACAACATGGCCACCA+AGG | - | chr5_2:9486684-9486703 | Msa0755650:CDS | 50.0% | |
| ! | GTGGTGTTGGAGTTAGGGTT+TGG | + | chr5_2:9486539-9486558 | None:intergenic | 50.0% |
| TGAAGGGGTTGTAGTGGTGT+TGG | + | chr5_2:9486552-9486571 | None:intergenic | 50.0% | |
| ! | TGATGGTGAAGGGGTTGTAG+TGG | + | chr5_2:9486558-9486577 | None:intergenic | 50.0% |
| ! | GGGCTTTTGCTGAAGACACA+AGG | - | chr5_2:9486654-9486673 | Msa0755650:CDS | 50.0% |
| TGAACACAACATGGCCACCA+AGG | - | chr5_2:9486684-9486703 | Msa0755650:CDS | 50.0% | |
| GTGCAGGTATAGGACCTTGG+TGG | + | chr5_2:9486701-9486720 | None:intergenic | 55.0% | |
| TTCCGGTCAGCTCAAGCTCT+TGG | - | chr5_2:9486737-9486756 | Msa0755650:CDS | 55.0% | |
| CACCAAGAGCTTGAGCTGAC+CGG | + | chr5_2:9486742-9486761 | None:intergenic | 55.0% | |
| ! | GGCTTTGATGGAGACGAGCA+CGG | + | chr5_2:9486790-9486809 | None:intergenic | 55.0% |
| GTGCAGGTATAGGACCTTGG+TGG | + | chr5_2:9486701-9486720 | None:intergenic | 55.0% | |
| TTCCGGTCAGCTCAAGCTCT+TGG | - | chr5_2:9486737-9486756 | Msa0755650:CDS | 55.0% | |
| CACCAAGAGCTTGAGCTGAC+CGG | + | chr5_2:9486742-9486761 | None:intergenic | 55.0% | |
| ! | GGCTTTGATGGAGACGAGCA+CGG | + | chr5_2:9486790-9486809 | None:intergenic | 55.0% |
| CGGTCAGCTCAAGCTCTTGG+TGG | - | chr5_2:9486740-9486759 | Msa0755650:CDS | 60.0% | |
| CGGTCAGCTCAAGCTCTTGG+TGG | - | chr5_2:9486740-9486759 | Msa0755650:CDS | 60.0% | |
| GATGGAGACGAGCACGGTCG+CGG | + | chr5_2:9486784-9486803 | None:intergenic | 65.0% | |
| GATGGAGACGAGCACGGTCG+CGG | + | chr5_2:9486784-9486803 | None:intergenic | 65.0% | |
| GGAGACGAGCACGGTCGCGG+CGG | + | chr5_2:9486781-9486800 | None:intergenic | 75.0% | |
| GGAGACGAGCACGGTCGCGG+CGG | + | chr5_2:9486781-9486800 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 9486458 | 9487225 | 9486458 | ID=Msa0755650;Name=Msa0755650 |
| chr5_2 | mRNA | 9486458 | 9487225 | 9486458 | ID=Msa0755650-mRNA-1;Parent=Msa0755650;Name=Msa0755650-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|255 |
| chr5_2 | exon | 9486458 | 9487225 | 9486458 | ID=Msa0755650-mRNA-1:exon:4380;Parent=Msa0755650-mRNA-1 |
| chr5_2 | CDS | 9486458 | 9487225 | 9486458 | ID=Msa0755650-mRNA-1:cds;Parent=Msa0755650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
