Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0755690 | ADI60287.1 | 99.216 | 255 | 1 | 1 | 1 | 255 | 1 | 254 | 0.0 | 515 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0755690 | sp|O80942|ZFP10_ARATH | 57.303 | 89 | 26 | 3 | 45 | 129 | 7 | 87 | 4.28e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0755690 | D7R6G4 | 99.216 | 255 | 1 | 1 | 1 | 255 | 1 | 254 | 0.0 | 515 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0755690 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0710880 | Msa0755690 | 0.890762 | 7.344540e-74 | -8.615850e-47 |
| Msa0755650 | Msa0755690 | 0.956135 | 6.012154e-114 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0755690 | MtrunA17_Chr5g0400571 | 95.686 | 255 | 7 | 2 | 1 | 255 | 1 | 251 | 1.68e-179 | 493 |
| Msa0755690 | MtrunA17_Chr5g0435711 | 36.250 | 240 | 113 | 11 | 38 | 251 | 4 | 229 | 2.22e-27 | 105 |
| Msa0755690 | MtrunA17_Chr4g0009461 | 38.378 | 185 | 79 | 7 | 61 | 215 | 35 | 214 | 8.41e-25 | 100 |
| Msa0755690 | MtrunA17_Chr3g0112181 | 73.684 | 57 | 14 | 1 | 62 | 117 | 33 | 89 | 3.33e-24 | 97.8 |
| Msa0755690 | MtrunA17_Chr2g0315591 | 87.805 | 41 | 5 | 0 | 80 | 120 | 47 | 87 | 9.48e-22 | 90.1 |
| Msa0755690 | MtrunA17_Chr1g0184381 | 80.000 | 40 | 8 | 0 | 78 | 117 | 30 | 69 | 4.89e-18 | 79.3 |
| Msa0755690 | MtrunA17_Chr7g0239441 | 76.471 | 34 | 8 | 0 | 83 | 116 | 37 | 70 | 1.30e-13 | 66.6 |
| Msa0755690 | MtrunA17_Chr4g0032111 | 32.749 | 171 | 85 | 4 | 82 | 252 | 20 | 160 | 2.53e-13 | 66.2 |
| Msa0755690 | MtrunA17_Chr1g0184331 | 45.070 | 71 | 35 | 1 | 83 | 153 | 38 | 104 | 2.22e-12 | 63.2 |
| Msa0755690 | MtrunA17_Chr1g0187231 | 31.551 | 187 | 88 | 9 | 83 | 249 | 18 | 184 | 4.78e-12 | 63.2 |
| Msa0755690 | MtrunA17_Chr1g0168181 | 37.931 | 87 | 36 | 2 | 58 | 135 | 10 | 87 | 8.74e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0755690 | AT4G17810.1 | 42.982 | 228 | 87 | 9 | 41 | 252 | 3 | 203 | 9.53e-44 | 147 |
| Msa0755690 | AT4G17810.2 | 40.271 | 221 | 73 | 11 | 41 | 252 | 3 | 173 | 8.04e-36 | 125 |
| Msa0755690 | AT2G37740.1 | 57.303 | 89 | 26 | 3 | 45 | 129 | 7 | 87 | 4.35e-25 | 101 |
| Msa0755690 | AT5G06070.1 | 36.493 | 211 | 92 | 8 | 64 | 252 | 32 | 222 | 2.17e-23 | 95.1 |
| Msa0755690 | AT2G42410.2 | 34.667 | 225 | 93 | 8 | 53 | 249 | 14 | 212 | 3.13e-20 | 86.3 |
| Msa0755690 | AT2G42410.1 | 34.667 | 225 | 93 | 8 | 53 | 249 | 14 | 212 | 3.13e-20 | 86.3 |
| Msa0755690 | AT2G42410.3 | 34.667 | 225 | 93 | 8 | 53 | 249 | 40 | 238 | 5.00e-20 | 86.3 |
| Msa0755690 | AT3G23130.1 | 71.429 | 49 | 14 | 0 | 70 | 118 | 32 | 80 | 9.49e-20 | 84.7 |
| Msa0755690 | AT3G09290.1 | 73.529 | 34 | 9 | 0 | 83 | 116 | 33 | 66 | 6.75e-13 | 65.5 |
Find 60 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAAGCATTATTATTATT+AGG | 0.154031 | 5_2:-9523694 | None:intergenic |
| TATTATTAGGGTTTGGTAAA+TGG | 0.178618 | 5_2:-9523681 | None:intergenic |
| ATTTGCATCATCAAATTATT+TGG | 0.190581 | 5_2:-9523793 | None:intergenic |
| GTTGTAGTGGTGTTGGAGTT+AGG | 0.193934 | 5_2:-9523322 | None:intergenic |
| TGTTGCTGTTGATGTTGTTT+AGG | 0.258496 | 5_2:-9523379 | None:intergenic |
| CAAAAGCATTATTATTATTA+GGG | 0.268434 | 5_2:-9523693 | None:intergenic |
| GTTGCTGTTGATGTTGTTTA+GGG | 0.279368 | 5_2:-9523378 | None:intergenic |
| TTGTAGTGGTGTTGGAGTTA+GGG | 0.287569 | 5_2:-9523321 | None:intergenic |
| TTAACGGTGGTTGGCTTTGA+TGG | 0.294750 | 5_2:-9523579 | None:intergenic |
| CTTGATCTTGAGCTCCGTTT+AGG | 0.296503 | 5_2:+9523961 | Msa0755690:CDS |
| TACAATAGTTCTAGTCCTAA+TGG | 0.356996 | 5_2:+9523721 | Msa0755690:CDS |
| TTGATCTTGAGCTCCGTTTA+GGG | 0.364351 | 5_2:+9523962 | Msa0755690:CDS |
| AGTACCATGGCTACAGATAT+TGG | 0.374674 | 5_2:+9523232 | None:intergenic |
| GAGATTGAGAGAAAAGTAGA+AGG | 0.386084 | 5_2:-9523751 | None:intergenic |
| GTAGAAGGAGATTCTCCATT+AGG | 0.392764 | 5_2:-9523736 | None:intergenic |
| TTCATGACCGTTATCATCAA+TGG | 0.401936 | 5_2:-9523929 | None:intergenic |
| GCATTATTATTATTAGGGTT+TGG | 0.403821 | 5_2:-9523688 | None:intergenic |
| TGTTGGAGTTAGGGTTTGGT+TGG | 0.408721 | 5_2:-9523312 | None:intergenic |
| AACAAGAAGATGAAGATTCA+TGG | 0.412727 | 5_2:+9523404 | Msa0755690:CDS |
| CAAGAGCTTGTTGCTAATGC+TGG | 0.417258 | 5_2:+9523643 | Msa0755690:CDS |
| GTGTTGGCTTGTTCCCTAAA+CGG | 0.435644 | 5_2:-9523975 | None:intergenic |
| GTGGTGTTGGAGTTAGGGTT+TGG | 0.437650 | 5_2:-9523316 | None:intergenic |
| TCCACTTGAAAATTAAAAGA+TGG | 0.441538 | 5_2:-9523829 | None:intergenic |
| TGAAGGGGTTGTAGTGGTGT+TGG | 0.446031 | 5_2:-9523329 | None:intergenic |
| ATTAGGACTAGAACTATTGT+AGG | 0.449818 | 5_2:-9523719 | None:intergenic |
| ATGAAGATTCATGGGAGGTA+AGG | 0.450992 | 5_2:+9523413 | Msa0755690:CDS |
| TTCCGGTCAGCTCAAGCTCT+TGG | 0.471669 | 5_2:+9523517 | Msa0755690:CDS |
| GAGATGAATTTAACGGTGGT+TGG | 0.484111 | 5_2:-9523588 | None:intergenic |
| TGCATCATCAAATTATTTGG+TGG | 0.498570 | 5_2:-9523790 | None:intergenic |
| GGTTTGGTAAATGGTAAAGA+AGG | 0.506848 | 5_2:-9523672 | None:intergenic |
| CTTCACCATCATCATCAACT+TGG | 0.509068 | 5_2:+9523347 | Msa0755690:CDS |
| CGGTCAGCTCAAGCTCTTGG+TGG | 0.515963 | 5_2:+9523520 | Msa0755690:CDS |
| GATGGAGACGAGCACGGTCG+CGG | 0.516231 | 5_2:-9523561 | None:intergenic |
| ACAAGAAGATGAAGATTCAT+GGG | 0.528846 | 5_2:+9523405 | Msa0755690:CDS |
| CACCAAGAGCTTGAGCTGAC+CGG | 0.533757 | 5_2:-9523519 | None:intergenic |
| TGAAGATTCATGGGAGGTAA+GGG | 0.539677 | 5_2:+9523414 | Msa0755690:CDS |
| TGTGGAGGAATATTTATGAA+TGG | 0.545539 | 5_2:-9523622 | None:intergenic |
| GAAGGATGAGATGAATTTAA+CGG | 0.547030 | 5_2:-9523595 | None:intergenic |
| AGGTGCAAGTAGCATGTTGA+TGG | 0.551205 | 5_2:-9523906 | None:intergenic |
| CACATCCAAGTTGATGATGA+TGG | 0.567674 | 5_2:-9523352 | None:intergenic |
| TGCACCTCCATTGATGATAA+CGG | 0.570866 | 5_2:+9523922 | Msa0755690:CDS |
| AAAGCCAATATCTGTAGCCA+TGG | 0.572452 | 5_2:-9523236 | None:intergenic |
| GCATTAGCAACAAGCTCTTG+TGG | 0.586992 | 5_2:-9523640 | None:intergenic |
| GGCTTTGATGGAGACGAGCA+CGG | 0.589738 | 5_2:-9523567 | None:intergenic |
| CATCATCATCAACTTGGATG+TGG | 0.591753 | 5_2:+9523353 | Msa0755690:CDS |
| ATATTTATGAATGGTGATGA+AGG | 0.596989 | 5_2:-9523613 | None:intergenic |
| GTGCAGGTATAGGACCTTGG+TGG | 0.606792 | 5_2:-9523478 | None:intergenic |
| TGATGGTGAAGGGGTTGTAG+TGG | 0.613406 | 5_2:-9523335 | None:intergenic |
| AAAGTGCAGGTATAGGACCT+TGG | 0.620732 | 5_2:-9523481 | None:intergenic |
| TTCAAGTGGATAATTCAGCT+AGG | 0.628424 | 5_2:+9523842 | Msa0755690:CDS |
| CAAGTTGATGATGATGGTGA+AGG | 0.632187 | 5_2:-9523346 | None:intergenic |
| AAGTTGATGATGATGGTGAA+GGG | 0.633965 | 5_2:-9523345 | None:intergenic |
| ATGACCGTTATCATCAATGG+AGG | 0.643461 | 5_2:-9523926 | None:intergenic |
| TGAACACAACATGGCCACCA+AGG | 0.646071 | 5_2:+9523464 | Msa0755690:CDS |
| GGAGACGAGCACGGTCGCGG+CGG | 0.650175 | 5_2:-9523558 | None:intergenic |
| AGAAGATGAAGATTCATGGG+AGG | 0.682315 | 5_2:+9523408 | Msa0755690:CDS |
| AGTTGATGATGATGGTGAAG+GGG | 0.689572 | 5_2:-9523344 | None:intergenic |
| TTAGCAACAAGCTCTTGTGG+AGG | 0.690594 | 5_2:-9523637 | None:intergenic |
| GGAATATTATGAACACAACA+TGG | 0.697427 | 5_2:+9523455 | Msa0755690:CDS |
| GGATGAGATGAATTTAACGG+TGG | 0.714956 | 5_2:-9523592 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAAGCATTATTATTATTA+GGG | - | chr5_2:9523696-9523715 | None:intergenic | 15.0% |
| !!! | CAAAAGCATTATTATTATTA+GGG | - | chr5_2:9523696-9523715 | None:intergenic | 15.0% |
| !!! | GCAAAAGCATTATTATTATT+AGG | - | chr5_2:9523697-9523716 | None:intergenic | 20.0% |
| !! | ATTTGCATCATCAAATTATT+TGG | - | chr5_2:9523796-9523815 | None:intergenic | 20.0% |
| !!! | GCAAAAGCATTATTATTATT+AGG | - | chr5_2:9523697-9523716 | None:intergenic | 20.0% |
| !! | ATTTGCATCATCAAATTATT+TGG | - | chr5_2:9523796-9523815 | None:intergenic | 20.0% |
| !! | ATTGTGATTGTGATGATTTT+TGG | - | chr5_2:9523282-9523301 | None:intergenic | 25.0% |
| !! | ATATTTATGAATGGTGATGA+AGG | - | chr5_2:9523616-9523635 | None:intergenic | 25.0% |
| !! | TATTATTAGGGTTTGGTAAA+TGG | - | chr5_2:9523684-9523703 | None:intergenic | 25.0% |
| ! | GCATTATTATTATTAGGGTT+TGG | - | chr5_2:9523691-9523710 | None:intergenic | 25.0% |
| !!! | TCCATCTTTTAATTTTCAAG+TGG | + | chr5_2:9523828-9523847 | Msa0755690:CDS | 25.0% |
| ! | TCCACTTGAAAATTAAAAGA+TGG | - | chr5_2:9523832-9523851 | None:intergenic | 25.0% |
| !! | ATTGTGATTGTGATGATTTT+TGG | - | chr5_2:9523282-9523301 | None:intergenic | 25.0% |
| !! | ATATTTATGAATGGTGATGA+AGG | - | chr5_2:9523616-9523635 | None:intergenic | 25.0% |
| !! | TATTATTAGGGTTTGGTAAA+TGG | - | chr5_2:9523684-9523703 | None:intergenic | 25.0% |
| ! | GCATTATTATTATTAGGGTT+TGG | - | chr5_2:9523691-9523710 | None:intergenic | 25.0% |
| !!! | TCCATCTTTTAATTTTCAAG+TGG | + | chr5_2:9523828-9523847 | Msa0755690:CDS | 25.0% |
| ! | TCCACTTGAAAATTAAAAGA+TGG | - | chr5_2:9523832-9523851 | None:intergenic | 25.0% |
| ! | TTTTTGGATCTGAGTCATAT+TGG | - | chr5_2:9523266-9523285 | None:intergenic | 30.0% |
| AACAAGAAGATGAAGATTCA+TGG | + | chr5_2:9523404-9523423 | Msa0755690:CDS | 30.0% | |
| ACAAGAAGATGAAGATTCAT+GGG | + | chr5_2:9523405-9523424 | Msa0755690:CDS | 30.0% | |
| GGAATATTATGAACACAACA+TGG | + | chr5_2:9523455-9523474 | Msa0755690:CDS | 30.0% | |
| GAAGGATGAGATGAATTTAA+CGG | - | chr5_2:9523598-9523617 | None:intergenic | 30.0% | |
| TGTGGAGGAATATTTATGAA+TGG | - | chr5_2:9523625-9523644 | None:intergenic | 30.0% | |
| ATTAGGACTAGAACTATTGT+AGG | - | chr5_2:9523722-9523741 | None:intergenic | 30.0% | |
| !! | TACAATAGTTCTAGTCCTAA+TGG | + | chr5_2:9523721-9523740 | Msa0755690:CDS | 30.0% |
| TGCATCATCAAATTATTTGG+TGG | - | chr5_2:9523793-9523812 | None:intergenic | 30.0% | |
| !! | TTCTTCTTTTTCTAGCAAAG+TGG | + | chr5_2:9523882-9523901 | Msa0755690:CDS | 30.0% |
| ! | TTTTTGGATCTGAGTCATAT+TGG | - | chr5_2:9523266-9523285 | None:intergenic | 30.0% |
| AACAAGAAGATGAAGATTCA+TGG | + | chr5_2:9523404-9523423 | Msa0755690:CDS | 30.0% | |
| ACAAGAAGATGAAGATTCAT+GGG | + | chr5_2:9523405-9523424 | Msa0755690:CDS | 30.0% | |
| GGAATATTATGAACACAACA+TGG | + | chr5_2:9523455-9523474 | Msa0755690:CDS | 30.0% | |
| GAAGGATGAGATGAATTTAA+CGG | - | chr5_2:9523598-9523617 | None:intergenic | 30.0% | |
| TGTGGAGGAATATTTATGAA+TGG | - | chr5_2:9523625-9523644 | None:intergenic | 30.0% | |
| ATTAGGACTAGAACTATTGT+AGG | - | chr5_2:9523722-9523741 | None:intergenic | 30.0% | |
| !! | TACAATAGTTCTAGTCCTAA+TGG | + | chr5_2:9523721-9523740 | Msa0755690:CDS | 30.0% |
| TGCATCATCAAATTATTTGG+TGG | - | chr5_2:9523793-9523812 | None:intergenic | 30.0% | |
| !! | TTCTTCTTTTTCTAGCAAAG+TGG | + | chr5_2:9523882-9523901 | Msa0755690:CDS | 30.0% |
| !! | AAGTTGATGATGATGGTGAA+GGG | - | chr5_2:9523348-9523367 | None:intergenic | 35.0% |
| ! | GTTGCTGTTGATGTTGTTTA+GGG | - | chr5_2:9523381-9523400 | None:intergenic | 35.0% |
| ! | TGTTGCTGTTGATGTTGTTT+AGG | - | chr5_2:9523382-9523401 | None:intergenic | 35.0% |
| ! | GGTTTGGTAAATGGTAAAGA+AGG | - | chr5_2:9523675-9523694 | None:intergenic | 35.0% |
| GAGATTGAGAGAAAAGTAGA+AGG | - | chr5_2:9523754-9523773 | None:intergenic | 35.0% | |
| TTCAAGTGGATAATTCAGCT+AGG | + | chr5_2:9523842-9523861 | Msa0755690:CDS | 35.0% | |
| TTCATGACCGTTATCATCAA+TGG | - | chr5_2:9523932-9523951 | None:intergenic | 35.0% | |
| !! | AAGTTGATGATGATGGTGAA+GGG | - | chr5_2:9523348-9523367 | None:intergenic | 35.0% |
| ! | GTTGCTGTTGATGTTGTTTA+GGG | - | chr5_2:9523381-9523400 | None:intergenic | 35.0% |
| ! | TGTTGCTGTTGATGTTGTTT+AGG | - | chr5_2:9523382-9523401 | None:intergenic | 35.0% |
| ! | GGTTTGGTAAATGGTAAAGA+AGG | - | chr5_2:9523675-9523694 | None:intergenic | 35.0% |
| GAGATTGAGAGAAAAGTAGA+AGG | - | chr5_2:9523754-9523773 | None:intergenic | 35.0% | |
| TTCAAGTGGATAATTCAGCT+AGG | + | chr5_2:9523842-9523861 | Msa0755690:CDS | 35.0% | |
| TTCATGACCGTTATCATCAA+TGG | - | chr5_2:9523932-9523951 | None:intergenic | 35.0% | |
| ! | TTGTAGTGGTGTTGGAGTTA+GGG | - | chr5_2:9523324-9523343 | None:intergenic | 40.0% |
| !! | AGTTGATGATGATGGTGAAG+GGG | - | chr5_2:9523347-9523366 | None:intergenic | 40.0% |
| !! | CAAGTTGATGATGATGGTGA+AGG | - | chr5_2:9523349-9523368 | None:intergenic | 40.0% |
| CTTCACCATCATCATCAACT+TGG | + | chr5_2:9523347-9523366 | Msa0755690:CDS | 40.0% | |
| !! | CACATCCAAGTTGATGATGA+TGG | - | chr5_2:9523355-9523374 | None:intergenic | 40.0% |
| CATCATCATCAACTTGGATG+TGG | + | chr5_2:9523353-9523372 | Msa0755690:CDS | 40.0% | |
| AGAAGATGAAGATTCATGGG+AGG | + | chr5_2:9523408-9523427 | Msa0755690:CDS | 40.0% | |
| ATGAAGATTCATGGGAGGTA+AGG | + | chr5_2:9523413-9523432 | Msa0755690:CDS | 40.0% | |
| TGAAGATTCATGGGAGGTAA+GGG | + | chr5_2:9523414-9523433 | Msa0755690:CDS | 40.0% | |
| ! | TCTGCAAAAAGTGCAGGTAT+AGG | - | chr5_2:9523491-9523510 | None:intergenic | 40.0% |
| ! | CTTTTTGCAGAAGAGAGTTC+CGG | + | chr5_2:9523500-9523519 | Msa0755690:CDS | 40.0% |
| GAGATGAATTTAACGGTGGT+TGG | - | chr5_2:9523591-9523610 | None:intergenic | 40.0% | |
| GGATGAGATGAATTTAACGG+TGG | - | chr5_2:9523595-9523614 | None:intergenic | 40.0% | |
| GTAGAAGGAGATTCTCCATT+AGG | - | chr5_2:9523739-9523758 | None:intergenic | 40.0% | |
| ! | TGCACCTCCATTGATGATAA+CGG | + | chr5_2:9523922-9523941 | Msa0755690:CDS | 40.0% |
| ATGACCGTTATCATCAATGG+AGG | - | chr5_2:9523929-9523948 | None:intergenic | 40.0% | |
| TTGATCTTGAGCTCCGTTTA+GGG | + | chr5_2:9523962-9523981 | Msa0755690:CDS | 40.0% | |
| ! | TTGTAGTGGTGTTGGAGTTA+GGG | - | chr5_2:9523324-9523343 | None:intergenic | 40.0% |
| !! | AGTTGATGATGATGGTGAAG+GGG | - | chr5_2:9523347-9523366 | None:intergenic | 40.0% |
| !! | CAAGTTGATGATGATGGTGA+AGG | - | chr5_2:9523349-9523368 | None:intergenic | 40.0% |
| CTTCACCATCATCATCAACT+TGG | + | chr5_2:9523347-9523366 | Msa0755690:CDS | 40.0% | |
| !! | CACATCCAAGTTGATGATGA+TGG | - | chr5_2:9523355-9523374 | None:intergenic | 40.0% |
| CATCATCATCAACTTGGATG+TGG | + | chr5_2:9523353-9523372 | Msa0755690:CDS | 40.0% | |
| AGAAGATGAAGATTCATGGG+AGG | + | chr5_2:9523408-9523427 | Msa0755690:CDS | 40.0% | |
| ATGAAGATTCATGGGAGGTA+AGG | + | chr5_2:9523413-9523432 | Msa0755690:CDS | 40.0% | |
| TGAAGATTCATGGGAGGTAA+GGG | + | chr5_2:9523414-9523433 | Msa0755690:CDS | 40.0% | |
| ! | TCTGCAAAAAGTGCAGGTAT+AGG | - | chr5_2:9523491-9523510 | None:intergenic | 40.0% |
| ! | CTTTTTGCAGAAGAGAGTTC+CGG | + | chr5_2:9523500-9523519 | Msa0755690:CDS | 40.0% |
| GAGATGAATTTAACGGTGGT+TGG | - | chr5_2:9523591-9523610 | None:intergenic | 40.0% | |
| GGATGAGATGAATTTAACGG+TGG | - | chr5_2:9523595-9523614 | None:intergenic | 40.0% | |
| GTAGAAGGAGATTCTCCATT+AGG | - | chr5_2:9523739-9523758 | None:intergenic | 40.0% | |
| ! | TGCACCTCCATTGATGATAA+CGG | + | chr5_2:9523922-9523941 | Msa0755690:CDS | 40.0% |
| ATGACCGTTATCATCAATGG+AGG | - | chr5_2:9523929-9523948 | None:intergenic | 40.0% | |
| TTGATCTTGAGCTCCGTTTA+GGG | + | chr5_2:9523962-9523981 | Msa0755690:CDS | 40.0% | |
| ! | TGTTGGAGTTAGGGTTTGGT+TGG | - | chr5_2:9523315-9523334 | None:intergenic | 45.0% |
| ! | GTTGTAGTGGTGTTGGAGTT+AGG | - | chr5_2:9523325-9523344 | None:intergenic | 45.0% |
| AAAGTGCAGGTATAGGACCT+TGG | - | chr5_2:9523484-9523503 | None:intergenic | 45.0% | |
| ! | CTCTCTTCTGCAAAAAGTGC+AGG | - | chr5_2:9523497-9523516 | None:intergenic | 45.0% |
| !! | TTAACGGTGGTTGGCTTTGA+TGG | - | chr5_2:9523582-9523601 | None:intergenic | 45.0% |
| TTAGCAACAAGCTCTTGTGG+AGG | - | chr5_2:9523640-9523659 | None:intergenic | 45.0% | |
| GCATTAGCAACAAGCTCTTG+TGG | - | chr5_2:9523643-9523662 | None:intergenic | 45.0% | |
| !! | CAAGAGCTTGTTGCTAATGC+TGG | + | chr5_2:9523643-9523662 | Msa0755690:CDS | 45.0% |
| AGGTGCAAGTAGCATGTTGA+TGG | - | chr5_2:9523909-9523928 | None:intergenic | 45.0% | |
| CTTGATCTTGAGCTCCGTTT+AGG | + | chr5_2:9523961-9523980 | Msa0755690:CDS | 45.0% | |
| !! | GTGTTGGCTTGTTCCCTAAA+CGG | - | chr5_2:9523978-9523997 | None:intergenic | 45.0% |
| ! | TGTTGGAGTTAGGGTTTGGT+TGG | - | chr5_2:9523315-9523334 | None:intergenic | 45.0% |
| ! | GTTGTAGTGGTGTTGGAGTT+AGG | - | chr5_2:9523325-9523344 | None:intergenic | 45.0% |
| AAAGTGCAGGTATAGGACCT+TGG | - | chr5_2:9523484-9523503 | None:intergenic | 45.0% | |
| ! | CTCTCTTCTGCAAAAAGTGC+AGG | - | chr5_2:9523497-9523516 | None:intergenic | 45.0% |
| !! | TTAACGGTGGTTGGCTTTGA+TGG | - | chr5_2:9523582-9523601 | None:intergenic | 45.0% |
| TTAGCAACAAGCTCTTGTGG+AGG | - | chr5_2:9523640-9523659 | None:intergenic | 45.0% | |
| GCATTAGCAACAAGCTCTTG+TGG | - | chr5_2:9523643-9523662 | None:intergenic | 45.0% | |
| !! | CAAGAGCTTGTTGCTAATGC+TGG | + | chr5_2:9523643-9523662 | Msa0755690:CDS | 45.0% |
| AGGTGCAAGTAGCATGTTGA+TGG | - | chr5_2:9523909-9523928 | None:intergenic | 45.0% | |
| CTTGATCTTGAGCTCCGTTT+AGG | + | chr5_2:9523961-9523980 | Msa0755690:CDS | 45.0% | |
| !! | GTGTTGGCTTGTTCCCTAAA+CGG | - | chr5_2:9523978-9523997 | None:intergenic | 45.0% |
| ! | GTGGTGTTGGAGTTAGGGTT+TGG | - | chr5_2:9523319-9523338 | None:intergenic | 50.0% |
| TGAAGGGGTTGTAGTGGTGT+TGG | - | chr5_2:9523332-9523351 | None:intergenic | 50.0% | |
| ! | TGATGGTGAAGGGGTTGTAG+TGG | - | chr5_2:9523338-9523357 | None:intergenic | 50.0% |
| ! | GGGCTTTTGCTGAAGACACA+AGG | + | chr5_2:9523434-9523453 | Msa0755690:CDS | 50.0% |
| TGAACACAACATGGCCACCA+AGG | + | chr5_2:9523464-9523483 | Msa0755690:CDS | 50.0% | |
| ! | GTGGTGTTGGAGTTAGGGTT+TGG | - | chr5_2:9523319-9523338 | None:intergenic | 50.0% |
| TGAAGGGGTTGTAGTGGTGT+TGG | - | chr5_2:9523332-9523351 | None:intergenic | 50.0% | |
| ! | TGATGGTGAAGGGGTTGTAG+TGG | - | chr5_2:9523338-9523357 | None:intergenic | 50.0% |
| ! | GGGCTTTTGCTGAAGACACA+AGG | + | chr5_2:9523434-9523453 | Msa0755690:CDS | 50.0% |
| TGAACACAACATGGCCACCA+AGG | + | chr5_2:9523464-9523483 | Msa0755690:CDS | 50.0% | |
| GTGCAGGTATAGGACCTTGG+TGG | - | chr5_2:9523481-9523500 | None:intergenic | 55.0% | |
| TTCCGGTCAGCTCAAGCTCT+TGG | + | chr5_2:9523517-9523536 | Msa0755690:CDS | 55.0% | |
| CACCAAGAGCTTGAGCTGAC+CGG | - | chr5_2:9523522-9523541 | None:intergenic | 55.0% | |
| ! | GGCTTTGATGGAGACGAGCA+CGG | - | chr5_2:9523570-9523589 | None:intergenic | 55.0% |
| GTGCAGGTATAGGACCTTGG+TGG | - | chr5_2:9523481-9523500 | None:intergenic | 55.0% | |
| TTCCGGTCAGCTCAAGCTCT+TGG | + | chr5_2:9523517-9523536 | Msa0755690:CDS | 55.0% | |
| CACCAAGAGCTTGAGCTGAC+CGG | - | chr5_2:9523522-9523541 | None:intergenic | 55.0% | |
| ! | GGCTTTGATGGAGACGAGCA+CGG | - | chr5_2:9523570-9523589 | None:intergenic | 55.0% |
| CGGTCAGCTCAAGCTCTTGG+TGG | + | chr5_2:9523520-9523539 | Msa0755690:CDS | 60.0% | |
| CGGTCAGCTCAAGCTCTTGG+TGG | + | chr5_2:9523520-9523539 | Msa0755690:CDS | 60.0% | |
| GATGGAGACGAGCACGGTCG+CGG | - | chr5_2:9523564-9523583 | None:intergenic | 65.0% | |
| GATGGAGACGAGCACGGTCG+CGG | - | chr5_2:9523564-9523583 | None:intergenic | 65.0% | |
| GGAGACGAGCACGGTCGCGG+CGG | - | chr5_2:9523561-9523580 | None:intergenic | 75.0% | |
| GGAGACGAGCACGGTCGCGG+CGG | - | chr5_2:9523561-9523580 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 9523238 | 9524005 | 9523238 | ID=Msa0755690;Name=Msa0755690 |
| chr5_2 | mRNA | 9523238 | 9524005 | 9523238 | ID=Msa0755690-mRNA-1;Parent=Msa0755690;Name=Msa0755690-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|255 |
| chr5_2 | exon | 9523238 | 9524005 | 9523238 | ID=Msa0755690-mRNA-1:exon:4408;Parent=Msa0755690-mRNA-1 |
| chr5_2 | CDS | 9523238 | 9524005 | 9523238 | ID=Msa0755690-mRNA-1:cds;Parent=Msa0755690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
