Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757430 | XP_003611921.1 | 95.225 | 377 | 18 | 0 | 69 | 445 | 4 | 380 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757430 | sp|Q56XQ0|U496I_ARATH | 52.747 | 364 | 169 | 2 | 82 | 445 | 20 | 380 | 7.88e-123 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757430 | G7KC47 | 95.225 | 377 | 18 | 0 | 69 | 445 | 4 | 380 | 0.0 | 729 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0757430 | Msa0757480 | 0.992431 | 2.998375e-193 | -8.615850e-47 |
| Msa0757430 | Msa0837340 | 0.860960 | 1.434671e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757430 | MtrunA17_Chr5g0403571 | 95.225 | 377 | 18 | 0 | 69 | 445 | 4 | 380 | 0.0 | 729 |
| Msa0757430 | MtrunA17_Chr8g0373611 | 70.241 | 373 | 106 | 2 | 73 | 442 | 2 | 372 | 1.24e-173 | 491 |
| Msa0757430 | MtrunA17_Chr4g0034521 | 61.080 | 352 | 132 | 3 | 92 | 443 | 25 | 371 | 1.36e-137 | 399 |
| Msa0757430 | MtrunA17_Chr1g0162701 | 54.839 | 372 | 158 | 3 | 71 | 442 | 6 | 367 | 2.05e-126 | 371 |
| Msa0757430 | MtrunA17_Chr3g0080561 | 87.342 | 79 | 10 | 0 | 355 | 433 | 1 | 79 | 2.04e-39 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757430 | AT2G18630.2 | 52.747 | 364 | 169 | 2 | 82 | 445 | 20 | 380 | 7.25e-124 | 365 |
| Msa0757430 | AT2G18630.1 | 52.747 | 364 | 169 | 2 | 82 | 445 | 20 | 380 | 8.01e-124 | 365 |
| Msa0757430 | AT4G34320.2 | 56.657 | 353 | 147 | 4 | 92 | 443 | 19 | 366 | 8.89e-118 | 349 |
| Msa0757430 | AT4G34320.1 | 56.657 | 353 | 147 | 4 | 92 | 443 | 19 | 366 | 8.89e-118 | 349 |
| Msa0757430 | AT5G66675.3 | 50.653 | 383 | 179 | 4 | 71 | 445 | 17 | 397 | 1.02e-117 | 350 |
| Msa0757430 | AT5G66675.4 | 50.653 | 383 | 179 | 4 | 71 | 445 | 17 | 397 | 1.02e-117 | 350 |
| Msa0757430 | AT5G66675.1 | 50.653 | 383 | 179 | 4 | 71 | 445 | 17 | 397 | 1.02e-117 | 350 |
| Msa0757430 | AT5G66675.2 | 50.653 | 383 | 179 | 4 | 71 | 445 | 17 | 397 | 1.02e-117 | 350 |
| Msa0757430 | AT4G34330.1 | 48.000 | 350 | 164 | 4 | 92 | 441 | 17 | 348 | 9.71e-99 | 300 |
| Msa0757430 | AT5G66670.1 | 40.633 | 379 | 216 | 3 | 70 | 441 | 16 | 392 | 6.83e-87 | 271 |
| Msa0757430 | AT5G66670.3 | 40.633 | 379 | 216 | 3 | 70 | 441 | 16 | 392 | 6.83e-87 | 271 |
| Msa0757430 | AT5G66670.4 | 40.633 | 379 | 216 | 3 | 70 | 441 | 16 | 392 | 6.83e-87 | 271 |
| Msa0757430 | AT5G66670.2 | 40.633 | 379 | 216 | 3 | 70 | 441 | 16 | 392 | 6.83e-87 | 271 |
| Msa0757430 | AT5G66660.1 | 39.096 | 376 | 218 | 5 | 75 | 441 | 20 | 393 | 5.49e-76 | 243 |
| Msa0757430 | AT3G28290.1 | 29.144 | 374 | 236 | 9 | 92 | 440 | 11 | 380 | 1.93e-34 | 132 |
| Msa0757430 | AT3G28300.1 | 29.144 | 374 | 236 | 9 | 92 | 440 | 11 | 380 | 1.93e-34 | 132 |
| Msa0757430 | AT3G28270.2 | 28.889 | 360 | 238 | 7 | 96 | 440 | 16 | 372 | 8.19e-34 | 130 |
| Msa0757430 | AT3G28270.1 | 28.889 | 360 | 238 | 7 | 96 | 440 | 16 | 372 | 8.19e-34 | 130 |
| Msa0757430 | AT3G28320.1 | 25.159 | 314 | 212 | 8 | 148 | 440 | 2 | 313 | 1.02e-18 | 87.0 |
| Msa0757430 | AT3G57100.1 | 24.233 | 326 | 218 | 7 | 133 | 445 | 43 | 352 | 6.53e-18 | 85.5 |
Find 82 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATACGAGACAGCTTTAA+AGG | 0.201770 | 5_2:-12311346 | Msa0757430:CDS |
| CAATAGGCTCATTTGGAAAA+TGG | 0.266155 | 5_2:-12311386 | Msa0757430:CDS |
| GCATCGAAGGATTGCAAGTT+TGG | 0.278688 | 5_2:+12312044 | None:intergenic |
| CCAACGTAGTTCTGAAATTC+TGG | 0.291003 | 5_2:-12312836 | Msa0757430:CDS |
| TTTGATGAAGAGGTTCAAAA+TGG | 0.309858 | 5_2:-12311717 | Msa0757430:CDS |
| GCTGTTCCAATAGGCTCATT+TGG | 0.323940 | 5_2:-12311393 | Msa0757430:CDS |
| GGAAGTTGTCAAGGTCATTC+TGG | 0.348743 | 5_2:-12311904 | Msa0757430:CDS |
| ATCCTTCGATGCTACCATTC+AGG | 0.353874 | 5_2:-12312033 | Msa0757430:CDS |
| GAATAAAATTCTTCAGTAAA+GGG | 0.368691 | 5_2:+12311630 | None:intergenic |
| CCTGTTGTAACAGCTTTGGC+AGG | 0.382385 | 5_2:-12311423 | Msa0757430:CDS |
| TGGACTGCAAGCAAGATATA+TGG | 0.382413 | 5_2:-12311884 | Msa0757430:CDS |
| CCTGCCAAAGCTGTTACAAC+AGG | 0.393145 | 5_2:+12311423 | None:intergenic |
| CTCTCTTGCTCAAGGGATTG+AGG | 0.394697 | 5_2:-12311988 | Msa0757430:CDS |
| GAATGACCTTGACAACTTCC+TGG | 0.395392 | 5_2:+12311907 | None:intergenic |
| AACAGCTTTGGCAGGGGCAT+TGG | 0.398944 | 5_2:-12311415 | Msa0757430:CDS |
| TAGCCATAGAGCTCTATCTA+AGG | 0.401039 | 5_2:-12312934 | Msa0757430:CDS |
| CTTAAGGATTTCAAGGAAAC+CGG | 0.407846 | 5_2:-12311657 | Msa0757430:CDS |
| AAAGACGTTGAAAGGGCTTA+AGG | 0.409195 | 5_2:-12311673 | Msa0757430:CDS |
| CGAATAAAATTCTTCAGTAA+AGG | 0.416129 | 5_2:+12311629 | None:intergenic |
| CACCCATTTGAATCGGTGTT+GGG | 0.419900 | 5_2:+12312123 | None:intergenic |
| TGTCCCAACACCGATTCAAA+TGG | 0.439699 | 5_2:-12312126 | Msa0757430:CDS |
| CCTGTTGGTGCGCTCCTGAA+TGG | 0.441077 | 5_2:+12312019 | None:intergenic |
| TGGTGGATATGAATAACATT+CGG | 0.442086 | 5_2:-12311275 | Msa0757430:CDS |
| GTTCATGTCGAGAAGACTTC+CGG | 0.442461 | 5_2:+12311929 | None:intergenic |
| CCATTCAGGAGCGCACCAAC+AGG | 0.442576 | 5_2:-12312019 | Msa0757430:CDS |
| GGGGCATTGGCTGTTCCAAT+AGG | 0.449406 | 5_2:-12311402 | Msa0757430:CDS |
| GAAAGGGCTTAAGGATTTCA+AGG | 0.451917 | 5_2:-12311664 | Msa0757430:CDS |
| GGTGGATATGAATAACATTC+GGG | 0.452854 | 5_2:-12311274 | Msa0757430:CDS |
| AAATACGAGACAGCTTTAAA+GGG | 0.454834 | 5_2:-12311345 | Msa0757430:CDS |
| TCTCTTGGAGAAGGAATTCA+AGG | 0.455378 | 5_2:-12312867 | Msa0757430:CDS |
| GAACCTTAGATAGAGCTCTA+TGG | 0.455502 | 5_2:+12312931 | None:intergenic |
| TCGTGACTTGTTCTCCTTGG+TGG | 0.458271 | 5_2:-12311850 | Msa0757430:CDS |
| CATTACAAAACTCCAATGTC+TGG | 0.460870 | 5_2:+12311805 | None:intergenic |
| GAAAATAAAGATTGAATCCA+TGG | 0.463994 | 5_2:-12311235 | Msa0757430:CDS |
| TTCTTCAGTAAAGGGGTCCC+CGG | 0.472017 | 5_2:+12311638 | None:intergenic |
| GAGGTTCAAAATGGAGTTGA+AGG | 0.475155 | 5_2:-12311708 | Msa0757430:CDS |
| GGATCGTGACTTGTTCTCCT+TGG | 0.484403 | 5_2:-12311853 | Msa0757430:CDS |
| CTGTTGTAACAGCTTTGGCA+GGG | 0.485120 | 5_2:-12311422 | Msa0757430:CDS |
| TGACTTGTTCTCCTTGGTGG+AGG | 0.486659 | 5_2:-12311847 | Msa0757430:CDS |
| ACTTATGTAAAGACGTTGAA+AGG | 0.491081 | 5_2:-12311681 | Msa0757430:CDS |
| CGAGAATAGTCTCCAGACAT+TGG | 0.503949 | 5_2:-12311817 | Msa0757430:CDS |
| CTTATGTAAAGACGTTGAAA+GGG | 0.504265 | 5_2:-12311680 | Msa0757430:CDS |
| TGTTGTAACAGCTTTGGCAG+GGG | 0.510574 | 5_2:-12311421 | Msa0757430:CDS |
| TGAAATTCTGGCTGAAACCC+AGG | 0.516978 | 5_2:-12312824 | Msa0757430:intron |
| GTCCCAACACCGATTCAAAT+GGG | 0.524166 | 5_2:-12312125 | Msa0757430:CDS |
| GCCAAAGCTGTTACAACAGG+GGG | 0.524847 | 5_2:+12311426 | None:intergenic |
| GAGTCACTAGGAGAAGTTAC+CGG | 0.525494 | 5_2:-12311948 | Msa0757430:CDS |
| CTCCTGAATGGTAGCATCGA+AGG | 0.528207 | 5_2:+12312031 | None:intergenic |
| AGCTGATCAATGTAGTAGGC+AGG | 0.528656 | 5_2:-12311100 | Msa0757430:CDS |
| GAATGCGCACCCATTTGAAT+CGG | 0.533513 | 5_2:+12312116 | None:intergenic |
| GCACCCATTTGAATCGGTGT+TGG | 0.536554 | 5_2:+12312122 | None:intergenic |
| GTGATCAACTCTCTTGCTCA+AGG | 0.543035 | 5_2:-12311996 | Msa0757430:CDS |
| TGCAAGCTGATCAATGTAGT+AGG | 0.543984 | 5_2:-12311104 | Msa0757430:CDS |
| GTTATCATTTCAATGCATGT+TGG | 0.551745 | 5_2:-12311312 | Msa0757430:CDS |
| TCTATATCGCTTGAGTCACT+AGG | 0.561891 | 5_2:-12311960 | Msa0757430:CDS |
| AAGTCTTCTCGACATGAACC+AGG | 0.568362 | 5_2:-12311925 | Msa0757430:CDS |
| ATCAATGTAGTAGGCAGGCT+AGG | 0.571773 | 5_2:-12311095 | Msa0757430:CDS |
| CTGCCAAAGCTGTTACAACA+GGG | 0.573595 | 5_2:+12311424 | None:intergenic |
| AATAAAATTCTTCAGTAAAG+GGG | 0.573615 | 5_2:+12311631 | None:intergenic |
| GTAGGCAGGCTAGGAAAGCA+AGG | 0.576577 | 5_2:-12311086 | Msa0757430:CDS |
| TTGAAATGATAACTTCTCGT+TGG | 0.583800 | 5_2:+12311322 | None:intergenic |
| GCAAGATATATGGAACAAGA+AGG | 0.585118 | 5_2:-12311874 | Msa0757430:CDS |
| CTCTTGGAGAAGGAATTCAA+GGG | 0.594491 | 5_2:-12312866 | Msa0757430:CDS |
| TTAAGGATTTCAAGGAAACC+GGG | 0.601773 | 5_2:-12311656 | Msa0757430:CDS |
| AAGAGAGTTGATCACCCTGT+TGG | 0.602591 | 5_2:+12312004 | None:intergenic |
| ATCTCACAAGAGATTGAAGA+GGG | 0.605669 | 5_2:-12311523 | Msa0757430:CDS |
| CCAGAATTTCAGAACTACGT+TGG | 0.612046 | 5_2:+12312836 | None:intergenic |
| TGATCAACTCTCTTGCTCAA+GGG | 0.622317 | 5_2:-12311995 | Msa0757430:CDS |
| CATGAACCAGGAAGTTGTCA+AGG | 0.624194 | 5_2:-12311913 | Msa0757430:CDS |
| CAAAGCTGTTACAACAGGGG+GGG | 0.635120 | 5_2:+12311428 | None:intergenic |
| TGTTGGTACTAAAATTGCAC+TGG | 0.637667 | 5_2:-12311295 | Msa0757430:CDS |
| AATCTCACAAGAGATTGAAG+AGG | 0.640781 | 5_2:-12311524 | Msa0757430:CDS |
| CATTCAGGAGCGCACCAACA+GGG | 0.641177 | 5_2:-12312018 | Msa0757430:CDS |
| GGGTGCGCATTCTCTTTATG+CGG | 0.642050 | 5_2:-12312105 | Msa0757430:CDS |
| TGGTACTAAAATTGCACTGG+TGG | 0.644582 | 5_2:-12311292 | Msa0757430:CDS |
| AGAAATTGCAGCTGCCACCA+CGG | 0.646219 | 5_2:+12311452 | None:intergenic |
| AGGTTCAAAATGGAGTTGAA+GGG | 0.659181 | 5_2:-12311707 | Msa0757430:CDS |
| AAAATCAGCAGTTTGCACCA+TGG | 0.662189 | 5_2:+12311218 | None:intergenic |
| TGCCAAAGCTGTTACAACAG+GGG | 0.670839 | 5_2:+12311425 | None:intergenic |
| CCAAAGCTGTTACAACAGGG+GGG | 0.689883 | 5_2:+12311427 | None:intergenic |
| GGCTAGGAAAGCAAGGACAG+TGG | 0.694536 | 5_2:-12311079 | Msa0757430:CDS |
| TAAGGATTTCAAGGAAACCG+GGG | 0.696914 | 5_2:-12311655 | Msa0757430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGCTAAAAAAATTTATACCT+GGG | + | chr5_2:12311257-12311276 | None:intergenic | 20.0% |
| !! | TAGCTAAAAAAATTTATACC+TGG | + | chr5_2:12311258-12311277 | None:intergenic | 20.0% |
| !!! | AAAGATTGAAACTTTGATTT+TGG | - | chr5_2:12311311-12311330 | Msa0757430:CDS | 20.0% |
| !!! | AAGATTGAAACTTTGATTTT+GGG | - | chr5_2:12311312-12311331 | Msa0757430:CDS | 20.0% |
| !! | AACCAAATTTCAAAATTAGA+AGG | + | chr5_2:12311523-12311542 | None:intergenic | 20.0% |
| !!! | ATAATTGATTTTTACATGTC+TGG | - | chr5_2:12311602-12311621 | Msa0757430:CDS | 20.0% |
| !! | AATAAAATTCTTCAGTAAAG+GGG | + | chr5_2:12312433-12312452 | None:intergenic | 20.0% |
| !! | GAATAAAATTCTTCAGTAAA+GGG | + | chr5_2:12312434-12312453 | None:intergenic | 20.0% |
| !! | AGCTAAAAAAATTTATACCT+GGG | + | chr5_2:12311257-12311276 | None:intergenic | 20.0% |
| !! | TAGCTAAAAAAATTTATACC+TGG | + | chr5_2:12311258-12311277 | None:intergenic | 20.0% |
| !!! | AAAGATTGAAACTTTGATTT+TGG | - | chr5_2:12311311-12311330 | Msa0757430:CDS | 20.0% |
| !!! | AAGATTGAAACTTTGATTTT+GGG | - | chr5_2:12311312-12311331 | Msa0757430:CDS | 20.0% |
| !! | AACCAAATTTCAAAATTAGA+AGG | + | chr5_2:12311523-12311542 | None:intergenic | 20.0% |
| !!! | ATAATTGATTTTTACATGTC+TGG | - | chr5_2:12311602-12311621 | Msa0757430:CDS | 20.0% |
| !! | AATAAAATTCTTCAGTAAAG+GGG | + | chr5_2:12312433-12312452 | None:intergenic | 20.0% |
| !! | GAATAAAATTCTTCAGTAAA+GGG | + | chr5_2:12312434-12312453 | None:intergenic | 20.0% |
| ! | ACTGCAAAAATTGAAGTAAA+GGG | + | chr5_2:12311169-12311188 | None:intergenic | 25.0% |
| ! | AACTGCAAAAATTGAAGTAA+AGG | + | chr5_2:12311170-12311189 | None:intergenic | 25.0% |
| !!! | AGCCTTCTAATTTTGAAATT+TGG | - | chr5_2:12311518-12311537 | Msa0757430:CDS | 25.0% |
| !! | TTGAAATTTGGTTTAGTGTA+TGG | - | chr5_2:12311530-12311549 | Msa0757430:CDS | 25.0% |
| ! | CGAATAAAATTCTTCAGTAA+AGG | + | chr5_2:12312435-12312454 | None:intergenic | 25.0% |
| !!! | ATTTTATTCGTTGTTTCAGT+CGG | - | chr5_2:12312445-12312464 | Msa0757430:intron | 25.0% |
| ! | GAAAATAAAGATTGAATCCA+TGG | - | chr5_2:12312826-12312845 | Msa0757430:CDS | 25.0% |
| ! | ACTGCAAAAATTGAAGTAAA+GGG | + | chr5_2:12311169-12311188 | None:intergenic | 25.0% |
| ! | AACTGCAAAAATTGAAGTAA+AGG | + | chr5_2:12311170-12311189 | None:intergenic | 25.0% |
| !!! | AGCCTTCTAATTTTGAAATT+TGG | - | chr5_2:12311518-12311537 | Msa0757430:CDS | 25.0% |
| !! | TTGAAATTTGGTTTAGTGTA+TGG | - | chr5_2:12311530-12311549 | Msa0757430:CDS | 25.0% |
| ! | CGAATAAAATTCTTCAGTAA+AGG | + | chr5_2:12312435-12312454 | None:intergenic | 25.0% |
| !!! | ATTTTATTCGTTGTTTCAGT+CGG | - | chr5_2:12312445-12312464 | Msa0757430:intron | 25.0% |
| ! | GAAAATAAAGATTGAATCCA+TGG | - | chr5_2:12312826-12312845 | Msa0757430:CDS | 25.0% |
| !! | TTTTTGCAGTTGTTTTCTCT+TGG | - | chr5_2:12311179-12311198 | Msa0757430:CDS | 30.0% |
| TTCAATTGAGAAGACACAAA+AGG | + | chr5_2:12311380-12311399 | None:intergenic | 30.0% | |
| !! | GAGGCAAAAATTGATTTTTG+AGG | - | chr5_2:12311576-12311595 | Msa0757430:CDS | 30.0% |
| AATGTAATGTGGCTTAAGTT+TGG | + | chr5_2:12311741-12311760 | None:intergenic | 30.0% | |
| GAGTTGAATTGAATGTAATG+TGG | + | chr5_2:12311752-12311771 | None:intergenic | 30.0% | |
| !!! | AATGACTTGTTTTGATGAAG+AGG | - | chr5_2:12312334-12312353 | Msa0757430:intron | 30.0% |
| TTTGATGAAGAGGTTCAAAA+TGG | - | chr5_2:12312344-12312363 | Msa0757430:intron | 30.0% | |
| ACTTATGTAAAGACGTTGAA+AGG | - | chr5_2:12312380-12312399 | Msa0757430:intron | 30.0% | |
| CTTATGTAAAGACGTTGAAA+GGG | - | chr5_2:12312381-12312400 | Msa0757430:intron | 30.0% | |
| !! | AAATACGAGACAGCTTTAAA+GGG | - | chr5_2:12312716-12312735 | Msa0757430:intron | 30.0% |
| TTGAAATGATAACTTCTCGT+TGG | + | chr5_2:12312742-12312761 | None:intergenic | 30.0% | |
| GTTATCATTTCAATGCATGT+TGG | - | chr5_2:12312749-12312768 | Msa0757430:intron | 30.0% | |
| ! | TGGTGGATATGAATAACATT+CGG | - | chr5_2:12312786-12312805 | Msa0757430:intron | 30.0% |
| !! | TTTTTGCAGTTGTTTTCTCT+TGG | - | chr5_2:12311179-12311198 | Msa0757430:CDS | 30.0% |
| TTCAATTGAGAAGACACAAA+AGG | + | chr5_2:12311380-12311399 | None:intergenic | 30.0% | |
| !! | GAGGCAAAAATTGATTTTTG+AGG | - | chr5_2:12311576-12311595 | Msa0757430:CDS | 30.0% |
| AATGTAATGTGGCTTAAGTT+TGG | + | chr5_2:12311741-12311760 | None:intergenic | 30.0% | |
| GAGTTGAATTGAATGTAATG+TGG | + | chr5_2:12311752-12311771 | None:intergenic | 30.0% | |
| !!! | AATGACTTGTTTTGATGAAG+AGG | - | chr5_2:12312334-12312353 | Msa0757430:intron | 30.0% |
| TTTGATGAAGAGGTTCAAAA+TGG | - | chr5_2:12312344-12312363 | Msa0757430:intron | 30.0% | |
| ACTTATGTAAAGACGTTGAA+AGG | - | chr5_2:12312380-12312399 | Msa0757430:intron | 30.0% | |
| CTTATGTAAAGACGTTGAAA+GGG | - | chr5_2:12312381-12312400 | Msa0757430:intron | 30.0% | |
| !! | AAATACGAGACAGCTTTAAA+GGG | - | chr5_2:12312716-12312735 | Msa0757430:intron | 30.0% |
| TTGAAATGATAACTTCTCGT+TGG | + | chr5_2:12312742-12312761 | None:intergenic | 30.0% | |
| GTTATCATTTCAATGCATGT+TGG | - | chr5_2:12312749-12312768 | Msa0757430:intron | 30.0% | |
| ! | TGGTGGATATGAATAACATT+CGG | - | chr5_2:12312786-12312805 | Msa0757430:intron | 30.0% |
| !! | TCAATTGAAGTATTGCCTTG+TGG | - | chr5_2:12311391-12311410 | Msa0757430:CDS | 35.0% |
| !! | TTTTGAGAGTTGAGACTTGT+TGG | - | chr5_2:12311466-12311485 | Msa0757430:CDS | 35.0% |
| AATTAGAAGGCTACAAGCAA+TGG | + | chr5_2:12311510-12311529 | None:intergenic | 35.0% | |
| ! | GGTATTGCTTAGTTCACTTT+TGG | - | chr5_2:12311551-12311570 | Msa0757430:CDS | 35.0% |
| !! | ATTGCTTAGTTCACTTTTGG+AGG | - | chr5_2:12311554-12311573 | Msa0757430:CDS | 35.0% |
| !!! | TGTCTCTGCACATTGATTTT+TGG | - | chr5_2:12311675-12311694 | Msa0757430:CDS | 35.0% |
| ! | ACCAAACACACTAACCATTT+TGG | - | chr5_2:12311835-12311854 | Msa0757430:CDS | 35.0% |
| ACCAAAATGGTTAGTGTGTT+TGG | + | chr5_2:12311839-12311858 | None:intergenic | 35.0% | |
| TCTATTGGGACTGTGAAATT+GGG | - | chr5_2:12311871-12311890 | Msa0757430:CDS | 35.0% | |
| GCAAGATATATGGAACAAGA+AGG | - | chr5_2:12312187-12312206 | Msa0757430:intron | 35.0% | |
| CATTACAAAACTCCAATGTC+TGG | + | chr5_2:12312259-12312278 | None:intergenic | 35.0% | |
| AGGTTCAAAATGGAGTTGAA+GGG | - | chr5_2:12312354-12312373 | Msa0757430:intron | 35.0% | |
| CTTAAGGATTTCAAGGAAAC+CGG | - | chr5_2:12312404-12312423 | Msa0757430:intron | 35.0% | |
| TTAAGGATTTCAAGGAAACC+GGG | - | chr5_2:12312405-12312424 | Msa0757430:intron | 35.0% | |
| AATCTCACAAGAGATTGAAG+AGG | - | chr5_2:12312537-12312556 | Msa0757430:intron | 35.0% | |
| ATCTCACAAGAGATTGAAGA+GGG | - | chr5_2:12312538-12312557 | Msa0757430:intron | 35.0% | |
| ! | CATTTTCCAAATGAGCCTAT+TGG | + | chr5_2:12312677-12312696 | None:intergenic | 35.0% |
| CAATAGGCTCATTTGGAAAA+TGG | - | chr5_2:12312675-12312694 | Msa0757430:intron | 35.0% | |
| ! | GAAATACGAGACAGCTTTAA+AGG | - | chr5_2:12312715-12312734 | Msa0757430:intron | 35.0% |
| TGTTGGTACTAAAATTGCAC+TGG | - | chr5_2:12312766-12312785 | Msa0757430:intron | 35.0% | |
| GGTGGATATGAATAACATTC+GGG | - | chr5_2:12312787-12312806 | Msa0757430:intron | 35.0% | |
| ! | TGATTTTGCTCTTGGAAATG+AGG | - | chr5_2:12312859-12312878 | Msa0757430:CDS | 35.0% |
| !! | TCAATTGAAGTATTGCCTTG+TGG | - | chr5_2:12311391-12311410 | Msa0757430:CDS | 35.0% |
| !! | TTTTGAGAGTTGAGACTTGT+TGG | - | chr5_2:12311466-12311485 | Msa0757430:CDS | 35.0% |
| AATTAGAAGGCTACAAGCAA+TGG | + | chr5_2:12311510-12311529 | None:intergenic | 35.0% | |
| ! | GGTATTGCTTAGTTCACTTT+TGG | - | chr5_2:12311551-12311570 | Msa0757430:CDS | 35.0% |
| !! | ATTGCTTAGTTCACTTTTGG+AGG | - | chr5_2:12311554-12311573 | Msa0757430:CDS | 35.0% |
| !!! | TGTCTCTGCACATTGATTTT+TGG | - | chr5_2:12311675-12311694 | Msa0757430:CDS | 35.0% |
| ! | ACCAAACACACTAACCATTT+TGG | - | chr5_2:12311835-12311854 | Msa0757430:CDS | 35.0% |
| ACCAAAATGGTTAGTGTGTT+TGG | + | chr5_2:12311839-12311858 | None:intergenic | 35.0% | |
| TCTATTGGGACTGTGAAATT+GGG | - | chr5_2:12311871-12311890 | Msa0757430:CDS | 35.0% | |
| GCAAGATATATGGAACAAGA+AGG | - | chr5_2:12312187-12312206 | Msa0757430:intron | 35.0% | |
| CATTACAAAACTCCAATGTC+TGG | + | chr5_2:12312259-12312278 | None:intergenic | 35.0% | |
| AGGTTCAAAATGGAGTTGAA+GGG | - | chr5_2:12312354-12312373 | Msa0757430:intron | 35.0% | |
| CTTAAGGATTTCAAGGAAAC+CGG | - | chr5_2:12312404-12312423 | Msa0757430:intron | 35.0% | |
| TTAAGGATTTCAAGGAAACC+GGG | - | chr5_2:12312405-12312424 | Msa0757430:intron | 35.0% | |
| AATCTCACAAGAGATTGAAG+AGG | - | chr5_2:12312537-12312556 | Msa0757430:intron | 35.0% | |
| ATCTCACAAGAGATTGAAGA+GGG | - | chr5_2:12312538-12312557 | Msa0757430:intron | 35.0% | |
| ! | CATTTTCCAAATGAGCCTAT+TGG | + | chr5_2:12312677-12312696 | None:intergenic | 35.0% |
| CAATAGGCTCATTTGGAAAA+TGG | - | chr5_2:12312675-12312694 | Msa0757430:intron | 35.0% | |
| ! | GAAATACGAGACAGCTTTAA+AGG | - | chr5_2:12312715-12312734 | Msa0757430:intron | 35.0% |
| TGTTGGTACTAAAATTGCAC+TGG | - | chr5_2:12312766-12312785 | Msa0757430:intron | 35.0% | |
| GGTGGATATGAATAACATTC+GGG | - | chr5_2:12312787-12312806 | Msa0757430:intron | 35.0% | |
| ! | TGATTTTGCTCTTGGAAATG+AGG | - | chr5_2:12312859-12312878 | Msa0757430:CDS | 35.0% |
| TAGCCATAGAGCTCTATCTA+AGG | - | chr5_2:12311127-12311146 | Msa0757430:CDS | 40.0% | |
| GAACCTTAGATAGAGCTCTA+TGG | + | chr5_2:12311133-12311152 | None:intergenic | 40.0% | |
| !! | CAGTTGTTTTCTCTTGGAGA+AGG | - | chr5_2:12311185-12311204 | Msa0757430:CDS | 40.0% |
| TCTCTTGGAGAAGGAATTCA+AGG | - | chr5_2:12311194-12311213 | Msa0757430:CDS | 40.0% | |
| CTCTTGGAGAAGGAATTCAA+GGG | - | chr5_2:12311195-12311214 | Msa0757430:CDS | 40.0% | |
| CCAGAATTTCAGAACTACGT+TGG | + | chr5_2:12311228-12311247 | None:intergenic | 40.0% | |
| !! | CCAACGTAGTTCTGAAATTC+TGG | - | chr5_2:12311225-12311244 | Msa0757430:CDS | 40.0% |
| CATGCTCAATTTCATCCACA+AGG | + | chr5_2:12311409-12311428 | None:intergenic | 40.0% | |
| !! | TTAGTGTGTTTGGTTCTGCA+AGG | + | chr5_2:12311829-12311848 | None:intergenic | 40.0% |
| !! | AGAGCTAAGAAGCACCAAAA+TGG | + | chr5_2:12311852-12311871 | None:intergenic | 40.0% |
| ! | GTGCTTCTTAGCTCTCTATT+GGG | - | chr5_2:12311857-12311876 | Msa0757430:CDS | 40.0% |
| CTCTATTGGGACTGTGAAAT+TGG | - | chr5_2:12311870-12311889 | Msa0757430:CDS | 40.0% | |
| TGATCAACTCTCTTGCTCAA+GGG | - | chr5_2:12312066-12312085 | Msa0757430:CDS | 40.0% | |
| TCTATATCGCTTGAGTCACT+AGG | - | chr5_2:12312101-12312120 | Msa0757430:CDS | 40.0% | |
| TGGACTGCAAGCAAGATATA+TGG | - | chr5_2:12312177-12312196 | Msa0757430:intron | 40.0% | |
| GAGGTTCAAAATGGAGTTGA+AGG | - | chr5_2:12312353-12312372 | Msa0757430:intron | 40.0% | |
| AAAGACGTTGAAAGGGCTTA+AGG | - | chr5_2:12312388-12312407 | Msa0757430:intron | 40.0% | |
| GAAAGGGCTTAAGGATTTCA+AGG | - | chr5_2:12312397-12312416 | Msa0757430:intron | 40.0% | |
| TAAGGATTTCAAGGAAACCG+GGG | - | chr5_2:12312406-12312425 | Msa0757430:intron | 40.0% | |
| TGGTACTAAAATTGCACTGG+TGG | - | chr5_2:12312769-12312788 | Msa0757430:intron | 40.0% | |
| AAAATCAGCAGTTTGCACCA+TGG | + | chr5_2:12312846-12312865 | None:intergenic | 40.0% | |
| !!! | CAAACTGCTGATTTTGCTCT+TGG | - | chr5_2:12312851-12312870 | Msa0757430:CDS | 40.0% |
| TGCAAGCTGATCAATGTAGT+AGG | - | chr5_2:12312957-12312976 | Msa0757430:CDS | 40.0% | |
| TAGCCATAGAGCTCTATCTA+AGG | - | chr5_2:12311127-12311146 | Msa0757430:CDS | 40.0% | |
| GAACCTTAGATAGAGCTCTA+TGG | + | chr5_2:12311133-12311152 | None:intergenic | 40.0% | |
| !! | CAGTTGTTTTCTCTTGGAGA+AGG | - | chr5_2:12311185-12311204 | Msa0757430:CDS | 40.0% |
| TCTCTTGGAGAAGGAATTCA+AGG | - | chr5_2:12311194-12311213 | Msa0757430:CDS | 40.0% | |
| CTCTTGGAGAAGGAATTCAA+GGG | - | chr5_2:12311195-12311214 | Msa0757430:CDS | 40.0% | |
| CCAGAATTTCAGAACTACGT+TGG | + | chr5_2:12311228-12311247 | None:intergenic | 40.0% | |
| !! | CCAACGTAGTTCTGAAATTC+TGG | - | chr5_2:12311225-12311244 | Msa0757430:CDS | 40.0% |
| CATGCTCAATTTCATCCACA+AGG | + | chr5_2:12311409-12311428 | None:intergenic | 40.0% | |
| !! | TTAGTGTGTTTGGTTCTGCA+AGG | + | chr5_2:12311829-12311848 | None:intergenic | 40.0% |
| !! | AGAGCTAAGAAGCACCAAAA+TGG | + | chr5_2:12311852-12311871 | None:intergenic | 40.0% |
| ! | GTGCTTCTTAGCTCTCTATT+GGG | - | chr5_2:12311857-12311876 | Msa0757430:CDS | 40.0% |
| CTCTATTGGGACTGTGAAAT+TGG | - | chr5_2:12311870-12311889 | Msa0757430:CDS | 40.0% | |
| TGATCAACTCTCTTGCTCAA+GGG | - | chr5_2:12312066-12312085 | Msa0757430:CDS | 40.0% | |
| TCTATATCGCTTGAGTCACT+AGG | - | chr5_2:12312101-12312120 | Msa0757430:CDS | 40.0% | |
| TGGACTGCAAGCAAGATATA+TGG | - | chr5_2:12312177-12312196 | Msa0757430:intron | 40.0% | |
| GAGGTTCAAAATGGAGTTGA+AGG | - | chr5_2:12312353-12312372 | Msa0757430:intron | 40.0% | |
| AAAGACGTTGAAAGGGCTTA+AGG | - | chr5_2:12312388-12312407 | Msa0757430:intron | 40.0% | |
| GAAAGGGCTTAAGGATTTCA+AGG | - | chr5_2:12312397-12312416 | Msa0757430:intron | 40.0% | |
| TAAGGATTTCAAGGAAACCG+GGG | - | chr5_2:12312406-12312425 | Msa0757430:intron | 40.0% | |
| TGGTACTAAAATTGCACTGG+TGG | - | chr5_2:12312769-12312788 | Msa0757430:intron | 40.0% | |
| AAAATCAGCAGTTTGCACCA+TGG | + | chr5_2:12312846-12312865 | None:intergenic | 40.0% | |
| !!! | CAAACTGCTGATTTTGCTCT+TGG | - | chr5_2:12312851-12312870 | Msa0757430:CDS | 40.0% |
| TGCAAGCTGATCAATGTAGT+AGG | - | chr5_2:12312957-12312976 | Msa0757430:CDS | 40.0% | |
| ! | TGAAATTCTGGCTGAAACCC+AGG | - | chr5_2:12311237-12311256 | Msa0757430:CDS | 45.0% |
| !! | GCTTAGTTCACTTTTGGAGG+AGG | - | chr5_2:12311557-12311576 | Msa0757430:CDS | 45.0% |
| ! | GGTGCTTCTTAGCTCTCTAT+TGG | - | chr5_2:12311856-12311875 | Msa0757430:CDS | 45.0% |
| TTGGGACTGTGAAATTGGGA+TGG | - | chr5_2:12311875-12311894 | Msa0757430:CDS | 45.0% | |
| TGGGACTGTGAAATTGGGAT+GGG | - | chr5_2:12311876-12311895 | Msa0757430:CDS | 45.0% | |
| GTTAGAATTAGTCCCCTTGC+TGG | + | chr5_2:12311910-12311929 | None:intergenic | 45.0% | |
| !! | TGTCCCAACACCGATTCAAA+TGG | - | chr5_2:12311935-12311954 | Msa0757430:CDS | 45.0% |
| !! | GTCCCAACACCGATTCAAAT+GGG | - | chr5_2:12311936-12311955 | Msa0757430:CDS | 45.0% |
| ! | CACCCATTTGAATCGGTGTT+GGG | + | chr5_2:12311941-12311960 | None:intergenic | 45.0% |
| GAATGCGCACCCATTTGAAT+CGG | + | chr5_2:12311948-12311967 | None:intergenic | 45.0% | |
| GCATCGAAGGATTGCAAGTT+TGG | + | chr5_2:12312020-12312039 | None:intergenic | 45.0% | |
| ATCCTTCGATGCTACCATTC+AGG | - | chr5_2:12312028-12312047 | Msa0757430:CDS | 45.0% | |
| ! | AAGAGAGTTGATCACCCTGT+TGG | + | chr5_2:12312060-12312079 | None:intergenic | 45.0% |
| GTGATCAACTCTCTTGCTCA+AGG | - | chr5_2:12312065-12312084 | Msa0757430:CDS | 45.0% | |
| GAGTCACTAGGAGAAGTTAC+CGG | - | chr5_2:12312113-12312132 | Msa0757430:CDS | 45.0% | |
| GTTCATGTCGAGAAGACTTC+CGG | + | chr5_2:12312135-12312154 | None:intergenic | 45.0% | |
| AAGTCTTCTCGACATGAACC+AGG | - | chr5_2:12312136-12312155 | Msa0757430:CDS | 45.0% | |
| CATGAACCAGGAAGTTGTCA+AGG | - | chr5_2:12312148-12312167 | Msa0757430:CDS | 45.0% | |
| GAATGACCTTGACAACTTCC+TGG | + | chr5_2:12312157-12312176 | None:intergenic | 45.0% | |
| GGAAGTTGTCAAGGTCATTC+TGG | - | chr5_2:12312157-12312176 | Msa0757430:intron | 45.0% | |
| CTCGAAAAAATCCTCCACCA+AGG | + | chr5_2:12312228-12312247 | None:intergenic | 45.0% | |
| CGAGAATAGTCTCCAGACAT+TGG | - | chr5_2:12312244-12312263 | Msa0757430:intron | 45.0% | |
| !!! | AGCTGTGTTGATTTTCTCCG+TGG | - | chr5_2:12312592-12312611 | Msa0757430:intron | 45.0% |
| !!! | TGTGTTGATTTTCTCCGTGG+TGG | - | chr5_2:12312595-12312614 | Msa0757430:intron | 45.0% |
| TGCCAAAGCTGTTACAACAG+GGG | + | chr5_2:12312639-12312658 | None:intergenic | 45.0% | |
| CTGCCAAAGCTGTTACAACA+GGG | + | chr5_2:12312640-12312659 | None:intergenic | 45.0% | |
| ! | CTGTTGTAACAGCTTTGGCA+GGG | - | chr5_2:12312639-12312658 | Msa0757430:intron | 45.0% |
| ! | TGTTGTAACAGCTTTGGCAG+GGG | - | chr5_2:12312640-12312659 | Msa0757430:intron | 45.0% |
| GCTGTTCCAATAGGCTCATT+TGG | - | chr5_2:12312668-12312687 | Msa0757430:intron | 45.0% | |
| AGCTGATCAATGTAGTAGGC+AGG | - | chr5_2:12312961-12312980 | Msa0757430:CDS | 45.0% | |
| ATCAATGTAGTAGGCAGGCT+AGG | - | chr5_2:12312966-12312985 | Msa0757430:CDS | 45.0% | |
| ! | TGAAATTCTGGCTGAAACCC+AGG | - | chr5_2:12311237-12311256 | Msa0757430:CDS | 45.0% |
| !! | GCTTAGTTCACTTTTGGAGG+AGG | - | chr5_2:12311557-12311576 | Msa0757430:CDS | 45.0% |
| ! | GGTGCTTCTTAGCTCTCTAT+TGG | - | chr5_2:12311856-12311875 | Msa0757430:CDS | 45.0% |
| TTGGGACTGTGAAATTGGGA+TGG | - | chr5_2:12311875-12311894 | Msa0757430:CDS | 45.0% | |
| TGGGACTGTGAAATTGGGAT+GGG | - | chr5_2:12311876-12311895 | Msa0757430:CDS | 45.0% | |
| GTTAGAATTAGTCCCCTTGC+TGG | + | chr5_2:12311910-12311929 | None:intergenic | 45.0% | |
| !! | TGTCCCAACACCGATTCAAA+TGG | - | chr5_2:12311935-12311954 | Msa0757430:CDS | 45.0% |
| !! | GTCCCAACACCGATTCAAAT+GGG | - | chr5_2:12311936-12311955 | Msa0757430:CDS | 45.0% |
| ! | CACCCATTTGAATCGGTGTT+GGG | + | chr5_2:12311941-12311960 | None:intergenic | 45.0% |
| GAATGCGCACCCATTTGAAT+CGG | + | chr5_2:12311948-12311967 | None:intergenic | 45.0% | |
| GCATCGAAGGATTGCAAGTT+TGG | + | chr5_2:12312020-12312039 | None:intergenic | 45.0% | |
| ATCCTTCGATGCTACCATTC+AGG | - | chr5_2:12312028-12312047 | Msa0757430:CDS | 45.0% | |
| ! | AAGAGAGTTGATCACCCTGT+TGG | + | chr5_2:12312060-12312079 | None:intergenic | 45.0% |
| GTGATCAACTCTCTTGCTCA+AGG | - | chr5_2:12312065-12312084 | Msa0757430:CDS | 45.0% | |
| GAGTCACTAGGAGAAGTTAC+CGG | - | chr5_2:12312113-12312132 | Msa0757430:CDS | 45.0% | |
| GTTCATGTCGAGAAGACTTC+CGG | + | chr5_2:12312135-12312154 | None:intergenic | 45.0% | |
| AAGTCTTCTCGACATGAACC+AGG | - | chr5_2:12312136-12312155 | Msa0757430:CDS | 45.0% | |
| CATGAACCAGGAAGTTGTCA+AGG | - | chr5_2:12312148-12312167 | Msa0757430:CDS | 45.0% | |
| GAATGACCTTGACAACTTCC+TGG | + | chr5_2:12312157-12312176 | None:intergenic | 45.0% | |
| GGAAGTTGTCAAGGTCATTC+TGG | - | chr5_2:12312157-12312176 | Msa0757430:intron | 45.0% | |
| CTCGAAAAAATCCTCCACCA+AGG | + | chr5_2:12312228-12312247 | None:intergenic | 45.0% | |
| CGAGAATAGTCTCCAGACAT+TGG | - | chr5_2:12312244-12312263 | Msa0757430:intron | 45.0% | |
| !!! | AGCTGTGTTGATTTTCTCCG+TGG | - | chr5_2:12312592-12312611 | Msa0757430:intron | 45.0% |
| !!! | TGTGTTGATTTTCTCCGTGG+TGG | - | chr5_2:12312595-12312614 | Msa0757430:intron | 45.0% |
| TGCCAAAGCTGTTACAACAG+GGG | + | chr5_2:12312639-12312658 | None:intergenic | 45.0% | |
| CTGCCAAAGCTGTTACAACA+GGG | + | chr5_2:12312640-12312659 | None:intergenic | 45.0% | |
| ! | CTGTTGTAACAGCTTTGGCA+GGG | - | chr5_2:12312639-12312658 | Msa0757430:intron | 45.0% |
| ! | TGTTGTAACAGCTTTGGCAG+GGG | - | chr5_2:12312640-12312659 | Msa0757430:intron | 45.0% |
| GCTGTTCCAATAGGCTCATT+TGG | - | chr5_2:12312668-12312687 | Msa0757430:intron | 45.0% | |
| AGCTGATCAATGTAGTAGGC+AGG | - | chr5_2:12312961-12312980 | Msa0757430:CDS | 45.0% | |
| ATCAATGTAGTAGGCAGGCT+AGG | - | chr5_2:12312966-12312985 | Msa0757430:CDS | 45.0% | |
| GACTGTGAAATTGGGATGGG+AGG | - | chr5_2:12311879-12311898 | Msa0757430:CDS | 50.0% | |
| GCACCCATTTGAATCGGTGT+TGG | + | chr5_2:12311942-12311961 | None:intergenic | 50.0% | |
| GGGTGCGCATTCTCTTTATG+CGG | - | chr5_2:12311956-12311975 | Msa0757430:CDS | 50.0% | |
| ! | CTCCTGAATGGTAGCATCGA+AGG | + | chr5_2:12312033-12312052 | None:intergenic | 50.0% |
| CTCTCTTGCTCAAGGGATTG+AGG | - | chr5_2:12312073-12312092 | Msa0757430:CDS | 50.0% | |
| !! | GGATCGTGACTTGTTCTCCT+TGG | - | chr5_2:12312208-12312227 | Msa0757430:intron | 50.0% |
| !! | TCGTGACTTGTTCTCCTTGG+TGG | - | chr5_2:12312211-12312230 | Msa0757430:intron | 50.0% |
| !! | TGACTTGTTCTCCTTGGTGG+AGG | - | chr5_2:12312214-12312233 | Msa0757430:intron | 50.0% |
| !! | AGCGCGCGAAAAACTTGTTG+CGG | - | chr5_2:12312301-12312320 | Msa0757430:intron | 50.0% |
| TTCTTCAGTAAAGGGGTCCC+CGG | + | chr5_2:12312426-12312445 | None:intergenic | 50.0% | |
| AGAAATTGCAGCTGCCACCA+CGG | + | chr5_2:12312612-12312631 | None:intergenic | 50.0% | |
| CAAAGCTGTTACAACAGGGG+GGG | + | chr5_2:12312636-12312655 | None:intergenic | 50.0% | |
| CCAAAGCTGTTACAACAGGG+GGG | + | chr5_2:12312637-12312656 | None:intergenic | 50.0% | |
| GCCAAAGCTGTTACAACAGG+GGG | + | chr5_2:12312638-12312657 | None:intergenic | 50.0% | |
| CCTGCCAAAGCTGTTACAAC+AGG | + | chr5_2:12312641-12312660 | None:intergenic | 50.0% | |
| ! | CCTGTTGTAACAGCTTTGGC+AGG | - | chr5_2:12312638-12312657 | Msa0757430:intron | 50.0% |
| GACTGTGAAATTGGGATGGG+AGG | - | chr5_2:12311879-12311898 | Msa0757430:CDS | 50.0% | |
| GCACCCATTTGAATCGGTGT+TGG | + | chr5_2:12311942-12311961 | None:intergenic | 50.0% | |
| GGGTGCGCATTCTCTTTATG+CGG | - | chr5_2:12311956-12311975 | Msa0757430:CDS | 50.0% | |
| ! | CTCCTGAATGGTAGCATCGA+AGG | + | chr5_2:12312033-12312052 | None:intergenic | 50.0% |
| CTCTCTTGCTCAAGGGATTG+AGG | - | chr5_2:12312073-12312092 | Msa0757430:CDS | 50.0% | |
| !! | GGATCGTGACTTGTTCTCCT+TGG | - | chr5_2:12312208-12312227 | Msa0757430:intron | 50.0% |
| !! | TCGTGACTTGTTCTCCTTGG+TGG | - | chr5_2:12312211-12312230 | Msa0757430:intron | 50.0% |
| !! | TGACTTGTTCTCCTTGGTGG+AGG | - | chr5_2:12312214-12312233 | Msa0757430:intron | 50.0% |
| !! | AGCGCGCGAAAAACTTGTTG+CGG | - | chr5_2:12312301-12312320 | Msa0757430:intron | 50.0% |
| TTCTTCAGTAAAGGGGTCCC+CGG | + | chr5_2:12312426-12312445 | None:intergenic | 50.0% | |
| AGAAATTGCAGCTGCCACCA+CGG | + | chr5_2:12312612-12312631 | None:intergenic | 50.0% | |
| CAAAGCTGTTACAACAGGGG+GGG | + | chr5_2:12312636-12312655 | None:intergenic | 50.0% | |
| CCAAAGCTGTTACAACAGGG+GGG | + | chr5_2:12312637-12312656 | None:intergenic | 50.0% | |
| GCCAAAGCTGTTACAACAGG+GGG | + | chr5_2:12312638-12312657 | None:intergenic | 50.0% | |
| CCTGCCAAAGCTGTTACAAC+AGG | + | chr5_2:12312641-12312660 | None:intergenic | 50.0% | |
| ! | CCTGTTGTAACAGCTTTGGC+AGG | - | chr5_2:12312638-12312657 | Msa0757430:intron | 50.0% |
| ATGGGAGGTCAGTCCAGCAA+GGG | - | chr5_2:12311894-12311913 | Msa0757430:CDS | 55.0% | |
| ! | CATTCAGGAGCGCACCAACA+GGG | - | chr5_2:12312043-12312062 | Msa0757430:CDS | 55.0% |
| CCCCCCTGTTGTAACAGCTT+TGG | - | chr5_2:12312634-12312653 | Msa0757430:intron | 55.0% | |
| ! | AACAGCTTTGGCAGGGGCAT+TGG | - | chr5_2:12312646-12312665 | Msa0757430:intron | 55.0% |
| !! | GGGGCATTGGCTGTTCCAAT+AGG | - | chr5_2:12312659-12312678 | Msa0757430:intron | 55.0% |
| GTAGGCAGGCTAGGAAAGCA+AGG | - | chr5_2:12312975-12312994 | Msa0757430:CDS | 55.0% | |
| GGCTAGGAAAGCAAGGACAG+TGG | - | chr5_2:12312982-12313001 | Msa0757430:CDS | 55.0% | |
| ATGGGAGGTCAGTCCAGCAA+GGG | - | chr5_2:12311894-12311913 | Msa0757430:CDS | 55.0% | |
| ! | CATTCAGGAGCGCACCAACA+GGG | - | chr5_2:12312043-12312062 | Msa0757430:CDS | 55.0% |
| CCCCCCTGTTGTAACAGCTT+TGG | - | chr5_2:12312634-12312653 | Msa0757430:intron | 55.0% | |
| ! | AACAGCTTTGGCAGGGGCAT+TGG | - | chr5_2:12312646-12312665 | Msa0757430:intron | 55.0% |
| !! | GGGGCATTGGCTGTTCCAAT+AGG | - | chr5_2:12312659-12312678 | Msa0757430:intron | 55.0% |
| GTAGGCAGGCTAGGAAAGCA+AGG | - | chr5_2:12312975-12312994 | Msa0757430:CDS | 55.0% | |
| GGCTAGGAAAGCAAGGACAG+TGG | - | chr5_2:12312982-12313001 | Msa0757430:CDS | 55.0% | |
| GATGGGAGGTCAGTCCAGCA+AGG | - | chr5_2:12311893-12311912 | Msa0757430:CDS | 60.0% | |
| TGGGAGGTCAGTCCAGCAAG+GGG | - | chr5_2:12311895-12311914 | Msa0757430:CDS | 60.0% | |
| CCTGTTGGTGCGCTCCTGAA+TGG | + | chr5_2:12312045-12312064 | None:intergenic | 60.0% | |
| ! | CCATTCAGGAGCGCACCAAC+AGG | - | chr5_2:12312042-12312061 | Msa0757430:CDS | 60.0% |
| GATGGGAGGTCAGTCCAGCA+AGG | - | chr5_2:12311893-12311912 | Msa0757430:CDS | 60.0% | |
| TGGGAGGTCAGTCCAGCAAG+GGG | - | chr5_2:12311895-12311914 | Msa0757430:CDS | 60.0% | |
| CCTGTTGGTGCGCTCCTGAA+TGG | + | chr5_2:12312045-12312064 | None:intergenic | 60.0% | |
| ! | CCATTCAGGAGCGCACCAAC+AGG | - | chr5_2:12312042-12312061 | Msa0757430:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 12311047 | 12313036 | 12311047 | ID=Msa0757430;Name=Msa0757430 |
| chr5_2 | mRNA | 12311047 | 12313036 | 12311047 | ID=Msa0757430-mRNA-1;Parent=Msa0757430;Name=Msa0757430-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|1|1|2|0|445 |
| chr5_2 | exon | 12312825 | 12313036 | 12312825 | ID=Msa0757430-mRNA-1:exon:5544;Parent=Msa0757430-mRNA-1 |
| chr5_2 | exon | 12311047 | 12312172 | 12311047 | ID=Msa0757430-mRNA-1:exon:5543;Parent=Msa0757430-mRNA-1 |
| chr5_2 | CDS | 12312825 | 12313036 | 12312825 | ID=Msa0757430-mRNA-1:cds;Parent=Msa0757430-mRNA-1 |
| chr5_2 | CDS | 12311047 | 12312172 | 12311047 | ID=Msa0757430-mRNA-1:cds;Parent=Msa0757430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
