Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837340 | XP_003611921.1 | 95.225 | 377 | 18 | 0 | 69 | 445 | 4 | 380 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837340 | sp|Q56XQ0|U496I_ARATH | 52.747 | 364 | 169 | 2 | 82 | 445 | 20 | 380 | 6.69e-123 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837340 | G7KC47 | 95.225 | 377 | 18 | 0 | 69 | 445 | 4 | 380 | 0.0 | 729 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007990 | Msa0837340 | 0.800528 | 1.381481e-48 | -8.615850e-47 |
| Msa0757430 | Msa0837340 | 0.860960 | 1.434671e-63 | -8.615850e-47 |
| Msa0757480 | Msa0837340 | 0.870472 | 1.422261e-66 | -8.615850e-47 |
| Msa0837340 | Msa1019000 | 0.804631 | 1.969178e-49 | -8.615850e-47 |
| Msa0149300 | Msa0837340 | 0.808538 | 2.948656e-50 | -8.615850e-47 |
| Msa0367870 | Msa0837340 | 0.802092 | 6.608552e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837340 | MtrunA17_Chr5g0403571 | 95.225 | 377 | 18 | 0 | 69 | 445 | 4 | 380 | 0.0 | 729 |
| Msa0837340 | MtrunA17_Chr8g0373611 | 70.241 | 373 | 106 | 2 | 73 | 442 | 2 | 372 | 1.31e-173 | 491 |
| Msa0837340 | MtrunA17_Chr4g0034521 | 61.080 | 352 | 132 | 3 | 92 | 443 | 25 | 371 | 1.19e-137 | 399 |
| Msa0837340 | MtrunA17_Chr1g0162701 | 54.839 | 372 | 158 | 3 | 71 | 442 | 6 | 367 | 1.84e-126 | 371 |
| Msa0837340 | MtrunA17_Chr3g0080561 | 87.342 | 79 | 10 | 0 | 355 | 433 | 1 | 79 | 2.08e-39 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837340 | AT2G18630.2 | 52.747 | 364 | 169 | 2 | 82 | 445 | 20 | 380 | 6.79e-124 | 365 |
| Msa0837340 | AT2G18630.1 | 52.747 | 364 | 169 | 2 | 82 | 445 | 20 | 380 | 6.81e-124 | 365 |
| Msa0837340 | AT4G34320.2 | 56.657 | 353 | 147 | 4 | 92 | 443 | 19 | 366 | 8.33e-118 | 349 |
| Msa0837340 | AT4G34320.1 | 56.657 | 353 | 147 | 4 | 92 | 443 | 19 | 366 | 8.33e-118 | 349 |
| Msa0837340 | AT5G66675.3 | 50.653 | 383 | 179 | 4 | 71 | 445 | 17 | 397 | 1.25e-117 | 350 |
| Msa0837340 | AT5G66675.4 | 50.653 | 383 | 179 | 4 | 71 | 445 | 17 | 397 | 1.25e-117 | 350 |
| Msa0837340 | AT5G66675.1 | 50.653 | 383 | 179 | 4 | 71 | 445 | 17 | 397 | 1.25e-117 | 350 |
| Msa0837340 | AT5G66675.2 | 50.653 | 383 | 179 | 4 | 71 | 445 | 17 | 397 | 1.25e-117 | 350 |
| Msa0837340 | AT4G34330.1 | 48.000 | 350 | 164 | 4 | 92 | 441 | 17 | 348 | 9.20e-99 | 300 |
| Msa0837340 | AT5G66670.1 | 40.741 | 378 | 215 | 3 | 71 | 441 | 17 | 392 | 5.39e-87 | 271 |
| Msa0837340 | AT5G66670.3 | 40.741 | 378 | 215 | 3 | 71 | 441 | 17 | 392 | 5.39e-87 | 271 |
| Msa0837340 | AT5G66670.4 | 40.741 | 378 | 215 | 3 | 71 | 441 | 17 | 392 | 5.39e-87 | 271 |
| Msa0837340 | AT5G66670.2 | 40.741 | 378 | 215 | 3 | 71 | 441 | 17 | 392 | 5.39e-87 | 271 |
| Msa0837340 | AT5G66660.1 | 39.096 | 376 | 218 | 5 | 75 | 441 | 20 | 393 | 6.58e-76 | 243 |
| Msa0837340 | AT3G28290.1 | 29.144 | 374 | 236 | 9 | 92 | 440 | 11 | 380 | 2.05e-34 | 132 |
| Msa0837340 | AT3G28300.1 | 29.144 | 374 | 236 | 9 | 92 | 440 | 11 | 380 | 2.05e-34 | 132 |
| Msa0837340 | AT3G28270.2 | 28.889 | 360 | 238 | 7 | 96 | 440 | 16 | 372 | 8.27e-34 | 130 |
| Msa0837340 | AT3G28270.1 | 28.889 | 360 | 238 | 7 | 96 | 440 | 16 | 372 | 8.27e-34 | 130 |
| Msa0837340 | AT3G28320.1 | 25.159 | 314 | 212 | 8 | 148 | 440 | 2 | 313 | 1.00e-18 | 87.0 |
| Msa0837340 | AT3G57100.1 | 24.233 | 326 | 218 | 7 | 133 | 445 | 43 | 352 | 6.98e-18 | 85.1 |
Find 81 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATACGAGACAGCTTTAA+AGG | 0.201770 | 5_4:-11317593 | Msa0837340:CDS |
| CAATAGGCTCATTTGGAAAA+TGG | 0.266155 | 5_4:-11317633 | Msa0837340:CDS |
| GCATCGAAGGATTGCAAGTT+TGG | 0.278688 | 5_4:+11318291 | None:intergenic |
| CCAACGTAGTTCTGAAATTC+TGG | 0.291003 | 5_4:-11319082 | Msa0837340:CDS |
| TTTGATGAAGAGGTTCAAAA+TGG | 0.309858 | 5_4:-11317964 | Msa0837340:CDS |
| GCTGTTCCAATAGGCTCATT+TGG | 0.323940 | 5_4:-11317640 | Msa0837340:CDS |
| GGAAGTTGTCAAGGTCATTC+TGG | 0.348743 | 5_4:-11318151 | Msa0837340:CDS |
| ATCCTTCGATGCTACCATTC+AGG | 0.353874 | 5_4:-11318280 | Msa0837340:CDS |
| GAATAAAATTCTTCAGTAAA+GGG | 0.368691 | 5_4:+11317877 | None:intergenic |
| CCTGTTGTAACAGCTTTGGC+AGG | 0.382385 | 5_4:-11317670 | Msa0837340:CDS |
| TGGACTGCAAGCAAGATATA+TGG | 0.382413 | 5_4:-11318131 | Msa0837340:CDS |
| CCTGCCAAAGCTGTTACAAC+AGG | 0.393145 | 5_4:+11317670 | None:intergenic |
| CTCTCTTGCTCAAGGGATTG+AGG | 0.394697 | 5_4:-11318235 | Msa0837340:CDS |
| GAATGACCTTGACAACTTCC+TGG | 0.395392 | 5_4:+11318154 | None:intergenic |
| AACAGCTTTGGCAGGGGCAT+TGG | 0.398944 | 5_4:-11317662 | Msa0837340:CDS |
| TAGCCATAGAGCTCTATCTA+AGG | 0.401039 | 5_4:-11319180 | Msa0837340:CDS |
| CTTAAGGATTTCAAGGAAAC+CGG | 0.407846 | 5_4:-11317904 | Msa0837340:CDS |
| AAAGACGTTGAAAGGGCTTA+AGG | 0.409195 | 5_4:-11317920 | Msa0837340:CDS |
| CGAATAAAATTCTTCAGTAA+AGG | 0.416129 | 5_4:+11317876 | None:intergenic |
| CACCCATTTGAATCGGTGTT+GGG | 0.419900 | 5_4:+11318370 | None:intergenic |
| TGTCCCAACACCGATTCAAA+TGG | 0.439699 | 5_4:-11318373 | Msa0837340:CDS |
| CCTGTTGGTGCGCTCCTGAA+TGG | 0.441077 | 5_4:+11318266 | None:intergenic |
| TGGTGGATATGAATAACATT+CGG | 0.442086 | 5_4:-11317522 | Msa0837340:CDS |
| GTTCATGTCGAGAAGACTTC+CGG | 0.442461 | 5_4:+11318176 | None:intergenic |
| CCATTCAGGAGCGCACCAAC+AGG | 0.442576 | 5_4:-11318266 | Msa0837340:CDS |
| GGGGCATTGGCTGTTCCAAT+AGG | 0.449406 | 5_4:-11317649 | Msa0837340:CDS |
| GAAAGGGCTTAAGGATTTCA+AGG | 0.451917 | 5_4:-11317911 | Msa0837340:CDS |
| GGTGGATATGAATAACATTC+GGG | 0.452854 | 5_4:-11317521 | Msa0837340:CDS |
| AAATACGAGACAGCTTTAAA+GGG | 0.454834 | 5_4:-11317592 | Msa0837340:CDS |
| GAACCTTAGATAGAGCTCTA+TGG | 0.455502 | 5_4:+11319177 | None:intergenic |
| TCGTGACTTGTTCTCCTTGG+TGG | 0.458271 | 5_4:-11318097 | Msa0837340:CDS |
| CATTACAAAACTCCAATGTC+TGG | 0.460870 | 5_4:+11318052 | None:intergenic |
| GAAAATAAAGATTGAATCCA+TGG | 0.463994 | 5_4:-11317482 | Msa0837340:CDS |
| TTCTTCAGTAAAGGGGTCCC+CGG | 0.472017 | 5_4:+11317885 | None:intergenic |
| GAGGTTCAAAATGGAGTTGA+AGG | 0.475155 | 5_4:-11317955 | Msa0837340:CDS |
| GGATCGTGACTTGTTCTCCT+TGG | 0.484403 | 5_4:-11318100 | Msa0837340:CDS |
| CTGTTGTAACAGCTTTGGCA+GGG | 0.485120 | 5_4:-11317669 | Msa0837340:CDS |
| TGACTTGTTCTCCTTGGTGG+AGG | 0.486659 | 5_4:-11318094 | Msa0837340:CDS |
| ACTTATGTAAAGACGTTGAA+AGG | 0.491081 | 5_4:-11317928 | Msa0837340:CDS |
| CGAGAATAGTCTCCAGACAT+TGG | 0.503949 | 5_4:-11318064 | Msa0837340:CDS |
| CTTATGTAAAGACGTTGAAA+GGG | 0.504265 | 5_4:-11317927 | Msa0837340:CDS |
| TGTTGTAACAGCTTTGGCAG+GGG | 0.510574 | 5_4:-11317668 | Msa0837340:CDS |
| TGAAATTCTGGCTGAAACCC+AGG | 0.516978 | 5_4:-11319070 | Msa0837340:intron |
| GTCCCAACACCGATTCAAAT+GGG | 0.524166 | 5_4:-11318372 | Msa0837340:CDS |
| GCCAAAGCTGTTACAACAGG+GGG | 0.524847 | 5_4:+11317673 | None:intergenic |
| GAGTCACTAGGAGAAGTTAC+CGG | 0.525494 | 5_4:-11318195 | Msa0837340:CDS |
| TCTCTTGGAGAAGGAACTCA+AGG | 0.526560 | 5_4:-11319113 | Msa0837340:CDS |
| CTCCTGAATGGTAGCATCGA+AGG | 0.528207 | 5_4:+11318278 | None:intergenic |
| AGCTGATCAATGTAGTAGGC+AGG | 0.528656 | 5_4:-11317347 | Msa0837340:CDS |
| GAATGCGCACCCATTTGAAT+CGG | 0.533513 | 5_4:+11318363 | None:intergenic |
| GCACCCATTTGAATCGGTGT+TGG | 0.536554 | 5_4:+11318369 | None:intergenic |
| GTGATCAACTCTCTTGCTCA+AGG | 0.543035 | 5_4:-11318243 | Msa0837340:CDS |
| TGCAAGCTGATCAATGTAGT+AGG | 0.543984 | 5_4:-11317351 | Msa0837340:CDS |
| GTTATCATTTCAATGCATGT+TGG | 0.551745 | 5_4:-11317559 | Msa0837340:CDS |
| TCTATATCGCTTGAGTCACT+AGG | 0.561891 | 5_4:-11318207 | Msa0837340:CDS |
| AAGTCTTCTCGACATGAACC+AGG | 0.568362 | 5_4:-11318172 | Msa0837340:CDS |
| ATCAATGTAGTAGGCAGGCT+AGG | 0.571773 | 5_4:-11317342 | Msa0837340:CDS |
| CTGCCAAAGCTGTTACAACA+GGG | 0.573595 | 5_4:+11317671 | None:intergenic |
| AATAAAATTCTTCAGTAAAG+GGG | 0.573615 | 5_4:+11317878 | None:intergenic |
| GTAGGCAGGCTAGGAAAGCA+AGG | 0.576577 | 5_4:-11317333 | Msa0837340:CDS |
| TTGAAATGATAACTTCTCGT+TGG | 0.583800 | 5_4:+11317569 | None:intergenic |
| GCAAGATATATGGAACAAGA+AGG | 0.585118 | 5_4:-11318121 | Msa0837340:CDS |
| TTAAGGATTTCAAGGAAACC+GGG | 0.601773 | 5_4:-11317903 | Msa0837340:CDS |
| AAGAGAGTTGATCACCCTGT+TGG | 0.602591 | 5_4:+11318251 | None:intergenic |
| ATCTCACAAGAGATTGAAGA+GGG | 0.605669 | 5_4:-11317770 | Msa0837340:CDS |
| CCAGAATTTCAGAACTACGT+TGG | 0.612046 | 5_4:+11319082 | None:intergenic |
| CTCTTGGAGAAGGAACTCAA+GGG | 0.616989 | 5_4:-11319112 | Msa0837340:CDS |
| TGATCAACTCTCTTGCTCAA+GGG | 0.622317 | 5_4:-11318242 | Msa0837340:CDS |
| CATGAACCAGGAAGTTGTCA+AGG | 0.624194 | 5_4:-11318160 | Msa0837340:CDS |
| CAAAGCTGTTACAACAGGGG+GGG | 0.635120 | 5_4:+11317675 | None:intergenic |
| TGTTGGTACTAAAATTGCAC+TGG | 0.637667 | 5_4:-11317542 | Msa0837340:CDS |
| AATCTCACAAGAGATTGAAG+AGG | 0.640781 | 5_4:-11317771 | Msa0837340:CDS |
| CATTCAGGAGCGCACCAACA+GGG | 0.641177 | 5_4:-11318265 | Msa0837340:CDS |
| GGGTGCGCATTCTCTTTATG+CGG | 0.642050 | 5_4:-11318352 | Msa0837340:CDS |
| TGGTACTAAAATTGCACTGG+TGG | 0.644582 | 5_4:-11317539 | Msa0837340:CDS |
| AGGTTCAAAATGGAGTTGAA+GGG | 0.659181 | 5_4:-11317954 | Msa0837340:CDS |
| AAAATCAGCAGTTTGCACCA+TGG | 0.662189 | 5_4:+11317465 | None:intergenic |
| TGCCAAAGCTGTTACAACAG+GGG | 0.670839 | 5_4:+11317672 | None:intergenic |
| CCAAAGCTGTTACAACAGGG+GGG | 0.689883 | 5_4:+11317674 | None:intergenic |
| GGCTAGGAAAGCAAGGACAG+TGG | 0.694536 | 5_4:-11317326 | Msa0837340:CDS |
| TAAGGATTTCAAGGAAACCG+GGG | 0.696914 | 5_4:-11317902 | Msa0837340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGCTAAAAAAATTTATACCT+GGG | + | chr5_4:11317504-11317523 | None:intergenic | 20.0% |
| !! | TAGCTAAAAAAATTTATACC+TGG | + | chr5_4:11317505-11317524 | None:intergenic | 20.0% |
| !! | AACCAAATTTCAAAATTAGA+AGG | + | chr5_4:11317769-11317788 | None:intergenic | 20.0% |
| !!! | ATAATTGATTTTTACATGTC+TGG | - | chr5_4:11317848-11317867 | Msa0837340:CDS | 20.0% |
| !! | AATAAAATTCTTCAGTAAAG+GGG | + | chr5_4:11318679-11318698 | None:intergenic | 20.0% |
| !! | GAATAAAATTCTTCAGTAAA+GGG | + | chr5_4:11318680-11318699 | None:intergenic | 20.0% |
| !! | AGCTAAAAAAATTTATACCT+GGG | + | chr5_4:11317504-11317523 | None:intergenic | 20.0% |
| !! | TAGCTAAAAAAATTTATACC+TGG | + | chr5_4:11317505-11317524 | None:intergenic | 20.0% |
| !! | AACCAAATTTCAAAATTAGA+AGG | + | chr5_4:11317769-11317788 | None:intergenic | 20.0% |
| !!! | ATAATTGATTTTTACATGTC+TGG | - | chr5_4:11317848-11317867 | Msa0837340:CDS | 20.0% |
| !! | AATAAAATTCTTCAGTAAAG+GGG | + | chr5_4:11318679-11318698 | None:intergenic | 20.0% |
| !! | GAATAAAATTCTTCAGTAAA+GGG | + | chr5_4:11318680-11318699 | None:intergenic | 20.0% |
| ! | ACTGCAAAAATTGAAGTAAA+GGG | + | chr5_4:11317416-11317435 | None:intergenic | 25.0% |
| ! | AACTGCAAAAATTGAAGTAA+AGG | + | chr5_4:11317417-11317436 | None:intergenic | 25.0% |
| !!! | AGCCTTCTAATTTTGAAATT+TGG | - | chr5_4:11317764-11317783 | Msa0837340:CDS | 25.0% |
| !! | TTGAAATTTGGTTTAGTGTA+TGG | - | chr5_4:11317776-11317795 | Msa0837340:CDS | 25.0% |
| ! | CGAATAAAATTCTTCAGTAA+AGG | + | chr5_4:11318681-11318700 | None:intergenic | 25.0% |
| !!! | ATTTTATTCGTTGTTTCAGT+CGG | - | chr5_4:11318691-11318710 | Msa0837340:intron | 25.0% |
| ! | GAAAATAAAGATTGAATCCA+TGG | - | chr5_4:11319072-11319091 | Msa0837340:CDS | 25.0% |
| ! | ACTGCAAAAATTGAAGTAAA+GGG | + | chr5_4:11317416-11317435 | None:intergenic | 25.0% |
| ! | AACTGCAAAAATTGAAGTAA+AGG | + | chr5_4:11317417-11317436 | None:intergenic | 25.0% |
| !!! | AGCCTTCTAATTTTGAAATT+TGG | - | chr5_4:11317764-11317783 | Msa0837340:CDS | 25.0% |
| !! | TTGAAATTTGGTTTAGTGTA+TGG | - | chr5_4:11317776-11317795 | Msa0837340:CDS | 25.0% |
| ! | CGAATAAAATTCTTCAGTAA+AGG | + | chr5_4:11318681-11318700 | None:intergenic | 25.0% |
| !!! | ATTTTATTCGTTGTTTCAGT+CGG | - | chr5_4:11318691-11318710 | Msa0837340:intron | 25.0% |
| ! | GAAAATAAAGATTGAATCCA+TGG | - | chr5_4:11319072-11319091 | Msa0837340:CDS | 25.0% |
| !! | TTTTTGCAGTTGTTTTCTCT+TGG | - | chr5_4:11317426-11317445 | Msa0837340:CDS | 30.0% |
| TTCAATTGAGAAGACACAAA+AGG | + | chr5_4:11317625-11317644 | None:intergenic | 30.0% | |
| !! | GAGGCAAAAATTGATTTTTG+AGG | - | chr5_4:11317822-11317841 | Msa0837340:CDS | 30.0% |
| !!! | TGTCTCTACACATTGATTTT+TGG | - | chr5_4:11317921-11317940 | Msa0837340:CDS | 30.0% |
| AATGTAATGTGGCTTAAGTT+TGG | + | chr5_4:11317987-11318006 | None:intergenic | 30.0% | |
| GAGTTGAATTGAATGTAATG+TGG | + | chr5_4:11317998-11318017 | None:intergenic | 30.0% | |
| !!! | AATGACTTGTTTTGATGAAG+AGG | - | chr5_4:11318580-11318599 | Msa0837340:intron | 30.0% |
| TTTGATGAAGAGGTTCAAAA+TGG | - | chr5_4:11318590-11318609 | Msa0837340:intron | 30.0% | |
| ACTTATGTAAAGACGTTGAA+AGG | - | chr5_4:11318626-11318645 | Msa0837340:intron | 30.0% | |
| CTTATGTAAAGACGTTGAAA+GGG | - | chr5_4:11318627-11318646 | Msa0837340:intron | 30.0% | |
| !! | AAATACGAGACAGCTTTAAA+GGG | - | chr5_4:11318962-11318981 | Msa0837340:intron | 30.0% |
| TTGAAATGATAACTTCTCGT+TGG | + | chr5_4:11318988-11319007 | None:intergenic | 30.0% | |
| GTTATCATTTCAATGCATGT+TGG | - | chr5_4:11318995-11319014 | Msa0837340:intron | 30.0% | |
| ! | TGGTGGATATGAATAACATT+CGG | - | chr5_4:11319032-11319051 | Msa0837340:intron | 30.0% |
| !! | TTTTTGCAGTTGTTTTCTCT+TGG | - | chr5_4:11317426-11317445 | Msa0837340:CDS | 30.0% |
| TTCAATTGAGAAGACACAAA+AGG | + | chr5_4:11317625-11317644 | None:intergenic | 30.0% | |
| !! | GAGGCAAAAATTGATTTTTG+AGG | - | chr5_4:11317822-11317841 | Msa0837340:CDS | 30.0% |
| !!! | TGTCTCTACACATTGATTTT+TGG | - | chr5_4:11317921-11317940 | Msa0837340:CDS | 30.0% |
| AATGTAATGTGGCTTAAGTT+TGG | + | chr5_4:11317987-11318006 | None:intergenic | 30.0% | |
| GAGTTGAATTGAATGTAATG+TGG | + | chr5_4:11317998-11318017 | None:intergenic | 30.0% | |
| !!! | AATGACTTGTTTTGATGAAG+AGG | - | chr5_4:11318580-11318599 | Msa0837340:intron | 30.0% |
| TTTGATGAAGAGGTTCAAAA+TGG | - | chr5_4:11318590-11318609 | Msa0837340:intron | 30.0% | |
| ACTTATGTAAAGACGTTGAA+AGG | - | chr5_4:11318626-11318645 | Msa0837340:intron | 30.0% | |
| CTTATGTAAAGACGTTGAAA+GGG | - | chr5_4:11318627-11318646 | Msa0837340:intron | 30.0% | |
| !! | AAATACGAGACAGCTTTAAA+GGG | - | chr5_4:11318962-11318981 | Msa0837340:intron | 30.0% |
| TTGAAATGATAACTTCTCGT+TGG | + | chr5_4:11318988-11319007 | None:intergenic | 30.0% | |
| GTTATCATTTCAATGCATGT+TGG | - | chr5_4:11318995-11319014 | Msa0837340:intron | 30.0% | |
| ! | TGGTGGATATGAATAACATT+CGG | - | chr5_4:11319032-11319051 | Msa0837340:intron | 30.0% |
| !! | TCAATTGAAGTATTGCCTTG+TGG | - | chr5_4:11317636-11317655 | Msa0837340:CDS | 35.0% |
| !! | TTTTGAGAGTTGAGACTTGT+TGG | - | chr5_4:11317712-11317731 | Msa0837340:CDS | 35.0% |
| AATTAGAAGGCTACAAGCAA+TGG | + | chr5_4:11317756-11317775 | None:intergenic | 35.0% | |
| ! | GGTATTGCTTAGTTCACTTT+TGG | - | chr5_4:11317797-11317816 | Msa0837340:CDS | 35.0% |
| !! | ATTGCTTAGTTCACTTTTGG+AGG | - | chr5_4:11317800-11317819 | Msa0837340:CDS | 35.0% |
| ! | ACCAAACACACAAACCATTT+TGG | - | chr5_4:11318081-11318100 | Msa0837340:CDS | 35.0% |
| ! | ACCAAAATGGTTTGTGTGTT+TGG | + | chr5_4:11318085-11318104 | None:intergenic | 35.0% |
| TCTATTGGGACTGTGAAATT+GGG | - | chr5_4:11318117-11318136 | Msa0837340:CDS | 35.0% | |
| GCAAGATATATGGAACAAGA+AGG | - | chr5_4:11318433-11318452 | Msa0837340:intron | 35.0% | |
| CATTACAAAACTCCAATGTC+TGG | + | chr5_4:11318505-11318524 | None:intergenic | 35.0% | |
| AGGTTCAAAATGGAGTTGAA+GGG | - | chr5_4:11318600-11318619 | Msa0837340:intron | 35.0% | |
| CTTAAGGATTTCAAGGAAAC+CGG | - | chr5_4:11318650-11318669 | Msa0837340:intron | 35.0% | |
| TTAAGGATTTCAAGGAAACC+GGG | - | chr5_4:11318651-11318670 | Msa0837340:intron | 35.0% | |
| AATCTCACAAGAGATTGAAG+AGG | - | chr5_4:11318783-11318802 | Msa0837340:intron | 35.0% | |
| ATCTCACAAGAGATTGAAGA+GGG | - | chr5_4:11318784-11318803 | Msa0837340:intron | 35.0% | |
| !!! | TGTAGCTGTGTTGATTTTCT+CGG | - | chr5_4:11318835-11318854 | Msa0837340:intron | 35.0% |
| ! | CATTTTCCAAATGAGCCTAT+TGG | + | chr5_4:11318923-11318942 | None:intergenic | 35.0% |
| CAATAGGCTCATTTGGAAAA+TGG | - | chr5_4:11318921-11318940 | Msa0837340:intron | 35.0% | |
| ! | GAAATACGAGACAGCTTTAA+AGG | - | chr5_4:11318961-11318980 | Msa0837340:intron | 35.0% |
| TGTTGGTACTAAAATTGCAC+TGG | - | chr5_4:11319012-11319031 | Msa0837340:intron | 35.0% | |
| GGTGGATATGAATAACATTC+GGG | - | chr5_4:11319033-11319052 | Msa0837340:intron | 35.0% | |
| ! | TGATTTTGCTCTTGGAAATG+AGG | - | chr5_4:11319105-11319124 | Msa0837340:CDS | 35.0% |
| !! | TCAATTGAAGTATTGCCTTG+TGG | - | chr5_4:11317636-11317655 | Msa0837340:CDS | 35.0% |
| !! | TTTTGAGAGTTGAGACTTGT+TGG | - | chr5_4:11317712-11317731 | Msa0837340:CDS | 35.0% |
| AATTAGAAGGCTACAAGCAA+TGG | + | chr5_4:11317756-11317775 | None:intergenic | 35.0% | |
| ! | GGTATTGCTTAGTTCACTTT+TGG | - | chr5_4:11317797-11317816 | Msa0837340:CDS | 35.0% |
| !! | ATTGCTTAGTTCACTTTTGG+AGG | - | chr5_4:11317800-11317819 | Msa0837340:CDS | 35.0% |
| ! | ACCAAACACACAAACCATTT+TGG | - | chr5_4:11318081-11318100 | Msa0837340:CDS | 35.0% |
| ! | ACCAAAATGGTTTGTGTGTT+TGG | + | chr5_4:11318085-11318104 | None:intergenic | 35.0% |
| TCTATTGGGACTGTGAAATT+GGG | - | chr5_4:11318117-11318136 | Msa0837340:CDS | 35.0% | |
| GCAAGATATATGGAACAAGA+AGG | - | chr5_4:11318433-11318452 | Msa0837340:intron | 35.0% | |
| CATTACAAAACTCCAATGTC+TGG | + | chr5_4:11318505-11318524 | None:intergenic | 35.0% | |
| AGGTTCAAAATGGAGTTGAA+GGG | - | chr5_4:11318600-11318619 | Msa0837340:intron | 35.0% | |
| CTTAAGGATTTCAAGGAAAC+CGG | - | chr5_4:11318650-11318669 | Msa0837340:intron | 35.0% | |
| TTAAGGATTTCAAGGAAACC+GGG | - | chr5_4:11318651-11318670 | Msa0837340:intron | 35.0% | |
| AATCTCACAAGAGATTGAAG+AGG | - | chr5_4:11318783-11318802 | Msa0837340:intron | 35.0% | |
| ATCTCACAAGAGATTGAAGA+GGG | - | chr5_4:11318784-11318803 | Msa0837340:intron | 35.0% | |
| !!! | TGTAGCTGTGTTGATTTTCT+CGG | - | chr5_4:11318835-11318854 | Msa0837340:intron | 35.0% |
| ! | CATTTTCCAAATGAGCCTAT+TGG | + | chr5_4:11318923-11318942 | None:intergenic | 35.0% |
| CAATAGGCTCATTTGGAAAA+TGG | - | chr5_4:11318921-11318940 | Msa0837340:intron | 35.0% | |
| ! | GAAATACGAGACAGCTTTAA+AGG | - | chr5_4:11318961-11318980 | Msa0837340:intron | 35.0% |
| TGTTGGTACTAAAATTGCAC+TGG | - | chr5_4:11319012-11319031 | Msa0837340:intron | 35.0% | |
| GGTGGATATGAATAACATTC+GGG | - | chr5_4:11319033-11319052 | Msa0837340:intron | 35.0% | |
| ! | TGATTTTGCTCTTGGAAATG+AGG | - | chr5_4:11319105-11319124 | Msa0837340:CDS | 35.0% |
| TAGCCATAGAGCTCTATCTA+AGG | - | chr5_4:11317374-11317393 | Msa0837340:CDS | 40.0% | |
| GAACCTTAGATAGAGCTCTA+TGG | + | chr5_4:11317380-11317399 | None:intergenic | 40.0% | |
| !! | CAGTTGTTTTCTCTTGGAGA+AGG | - | chr5_4:11317432-11317451 | Msa0837340:CDS | 40.0% |
| CCAGAATTTCAGAACTACGT+TGG | + | chr5_4:11317475-11317494 | None:intergenic | 40.0% | |
| !! | CCAACGTAGTTCTGAAATTC+TGG | - | chr5_4:11317472-11317491 | Msa0837340:CDS | 40.0% |
| CATGCTCAATTTCATCCACA+AGG | + | chr5_4:11317654-11317673 | None:intergenic | 40.0% | |
| !! | TTTGTGTGTTTGGTTCTGCA+AGG | + | chr5_4:11318075-11318094 | None:intergenic | 40.0% |
| !! | AGAGCTAAGAAGCACCAAAA+TGG | + | chr5_4:11318098-11318117 | None:intergenic | 40.0% |
| ! | GTGCTTCTTAGCTCTCTATT+GGG | - | chr5_4:11318103-11318122 | Msa0837340:CDS | 40.0% |
| CTCTATTGGGACTGTGAAAT+TGG | - | chr5_4:11318116-11318135 | Msa0837340:CDS | 40.0% | |
| TGATCAACTCTCTTGCTCAA+GGG | - | chr5_4:11318312-11318331 | Msa0837340:CDS | 40.0% | |
| TCTATATCGCTTGAGTCACT+AGG | - | chr5_4:11318347-11318366 | Msa0837340:CDS | 40.0% | |
| TGGACTGCAAGCAAGATATA+TGG | - | chr5_4:11318423-11318442 | Msa0837340:intron | 40.0% | |
| GAGGTTCAAAATGGAGTTGA+AGG | - | chr5_4:11318599-11318618 | Msa0837340:intron | 40.0% | |
| AAAGACGTTGAAAGGGCTTA+AGG | - | chr5_4:11318634-11318653 | Msa0837340:intron | 40.0% | |
| GAAAGGGCTTAAGGATTTCA+AGG | - | chr5_4:11318643-11318662 | Msa0837340:intron | 40.0% | |
| TAAGGATTTCAAGGAAACCG+GGG | - | chr5_4:11318652-11318671 | Msa0837340:intron | 40.0% | |
| TGGTACTAAAATTGCACTGG+TGG | - | chr5_4:11319015-11319034 | Msa0837340:intron | 40.0% | |
| AAAATCAGCAGTTTGCACCA+TGG | + | chr5_4:11319092-11319111 | None:intergenic | 40.0% | |
| !!! | CAAACTGCTGATTTTGCTCT+TGG | - | chr5_4:11319097-11319116 | Msa0837340:CDS | 40.0% |
| TGCAAGCTGATCAATGTAGT+AGG | - | chr5_4:11319203-11319222 | Msa0837340:CDS | 40.0% | |
| TAGCCATAGAGCTCTATCTA+AGG | - | chr5_4:11317374-11317393 | Msa0837340:CDS | 40.0% | |
| GAACCTTAGATAGAGCTCTA+TGG | + | chr5_4:11317380-11317399 | None:intergenic | 40.0% | |
| !! | CAGTTGTTTTCTCTTGGAGA+AGG | - | chr5_4:11317432-11317451 | Msa0837340:CDS | 40.0% |
| CCAGAATTTCAGAACTACGT+TGG | + | chr5_4:11317475-11317494 | None:intergenic | 40.0% | |
| !! | CCAACGTAGTTCTGAAATTC+TGG | - | chr5_4:11317472-11317491 | Msa0837340:CDS | 40.0% |
| CATGCTCAATTTCATCCACA+AGG | + | chr5_4:11317654-11317673 | None:intergenic | 40.0% | |
| !! | TTTGTGTGTTTGGTTCTGCA+AGG | + | chr5_4:11318075-11318094 | None:intergenic | 40.0% |
| !! | AGAGCTAAGAAGCACCAAAA+TGG | + | chr5_4:11318098-11318117 | None:intergenic | 40.0% |
| ! | GTGCTTCTTAGCTCTCTATT+GGG | - | chr5_4:11318103-11318122 | Msa0837340:CDS | 40.0% |
| CTCTATTGGGACTGTGAAAT+TGG | - | chr5_4:11318116-11318135 | Msa0837340:CDS | 40.0% | |
| TGATCAACTCTCTTGCTCAA+GGG | - | chr5_4:11318312-11318331 | Msa0837340:CDS | 40.0% | |
| TCTATATCGCTTGAGTCACT+AGG | - | chr5_4:11318347-11318366 | Msa0837340:CDS | 40.0% | |
| TGGACTGCAAGCAAGATATA+TGG | - | chr5_4:11318423-11318442 | Msa0837340:intron | 40.0% | |
| GAGGTTCAAAATGGAGTTGA+AGG | - | chr5_4:11318599-11318618 | Msa0837340:intron | 40.0% | |
| AAAGACGTTGAAAGGGCTTA+AGG | - | chr5_4:11318634-11318653 | Msa0837340:intron | 40.0% | |
| GAAAGGGCTTAAGGATTTCA+AGG | - | chr5_4:11318643-11318662 | Msa0837340:intron | 40.0% | |
| TAAGGATTTCAAGGAAACCG+GGG | - | chr5_4:11318652-11318671 | Msa0837340:intron | 40.0% | |
| TGGTACTAAAATTGCACTGG+TGG | - | chr5_4:11319015-11319034 | Msa0837340:intron | 40.0% | |
| AAAATCAGCAGTTTGCACCA+TGG | + | chr5_4:11319092-11319111 | None:intergenic | 40.0% | |
| !!! | CAAACTGCTGATTTTGCTCT+TGG | - | chr5_4:11319097-11319116 | Msa0837340:CDS | 40.0% |
| TGCAAGCTGATCAATGTAGT+AGG | - | chr5_4:11319203-11319222 | Msa0837340:CDS | 40.0% | |
| TCTCTTGGAGAAGGAACTCA+AGG | - | chr5_4:11317441-11317460 | Msa0837340:CDS | 45.0% | |
| CTCTTGGAGAAGGAACTCAA+GGG | - | chr5_4:11317442-11317461 | Msa0837340:CDS | 45.0% | |
| ! | TGAAATTCTGGCTGAAACCC+AGG | - | chr5_4:11317484-11317503 | Msa0837340:CDS | 45.0% |
| !! | GCTTAGTTCACTTTTGGAGG+AGG | - | chr5_4:11317803-11317822 | Msa0837340:CDS | 45.0% |
| ! | GGTGCTTCTTAGCTCTCTAT+TGG | - | chr5_4:11318102-11318121 | Msa0837340:CDS | 45.0% |
| TTGGGACTGTGAAATTGGGA+TGG | - | chr5_4:11318121-11318140 | Msa0837340:CDS | 45.0% | |
| TGGGACTGTGAAATTGGGAT+GGG | - | chr5_4:11318122-11318141 | Msa0837340:CDS | 45.0% | |
| GTTAGAATTAGTCCCCTTGC+TGG | + | chr5_4:11318156-11318175 | None:intergenic | 45.0% | |
| !! | TGTCCCAACACCGATTCAAA+TGG | - | chr5_4:11318181-11318200 | Msa0837340:CDS | 45.0% |
| !! | GTCCCAACACCGATTCAAAT+GGG | - | chr5_4:11318182-11318201 | Msa0837340:CDS | 45.0% |
| ! | CACCCATTTGAATCGGTGTT+GGG | + | chr5_4:11318187-11318206 | None:intergenic | 45.0% |
| GAATGCGCACCCATTTGAAT+CGG | + | chr5_4:11318194-11318213 | None:intergenic | 45.0% | |
| GCATCGAAGGATTGCAAGTT+TGG | + | chr5_4:11318266-11318285 | None:intergenic | 45.0% | |
| ATCCTTCGATGCTACCATTC+AGG | - | chr5_4:11318274-11318293 | Msa0837340:CDS | 45.0% | |
| ! | AAGAGAGTTGATCACCCTGT+TGG | + | chr5_4:11318306-11318325 | None:intergenic | 45.0% |
| GTGATCAACTCTCTTGCTCA+AGG | - | chr5_4:11318311-11318330 | Msa0837340:CDS | 45.0% | |
| GAGTCACTAGGAGAAGTTAC+CGG | - | chr5_4:11318359-11318378 | Msa0837340:CDS | 45.0% | |
| GTTCATGTCGAGAAGACTTC+CGG | + | chr5_4:11318381-11318400 | None:intergenic | 45.0% | |
| AAGTCTTCTCGACATGAACC+AGG | - | chr5_4:11318382-11318401 | Msa0837340:CDS | 45.0% | |
| CATGAACCAGGAAGTTGTCA+AGG | - | chr5_4:11318394-11318413 | Msa0837340:CDS | 45.0% | |
| GAATGACCTTGACAACTTCC+TGG | + | chr5_4:11318403-11318422 | None:intergenic | 45.0% | |
| GGAAGTTGTCAAGGTCATTC+TGG | - | chr5_4:11318403-11318422 | Msa0837340:intron | 45.0% | |
| CTCGAAAAAATCCTCCACCA+AGG | + | chr5_4:11318474-11318493 | None:intergenic | 45.0% | |
| CGAGAATAGTCTCCAGACAT+TGG | - | chr5_4:11318490-11318509 | Msa0837340:intron | 45.0% | |
| !!! | AGCTGTGTTGATTTTCTCGG+TGG | - | chr5_4:11318838-11318857 | Msa0837340:intron | 45.0% |
| !!! | TGTGTTGATTTTCTCGGTGG+TGG | - | chr5_4:11318841-11318860 | Msa0837340:intron | 45.0% |
| TGCCAAAGCTGTTACAACAG+GGG | + | chr5_4:11318885-11318904 | None:intergenic | 45.0% | |
| CTGCCAAAGCTGTTACAACA+GGG | + | chr5_4:11318886-11318905 | None:intergenic | 45.0% | |
| ! | CTGTTGTAACAGCTTTGGCA+GGG | - | chr5_4:11318885-11318904 | Msa0837340:intron | 45.0% |
| ! | TGTTGTAACAGCTTTGGCAG+GGG | - | chr5_4:11318886-11318905 | Msa0837340:intron | 45.0% |
| GCTGTTCCAATAGGCTCATT+TGG | - | chr5_4:11318914-11318933 | Msa0837340:intron | 45.0% | |
| AGCTGATCAATGTAGTAGGC+AGG | - | chr5_4:11319207-11319226 | Msa0837340:CDS | 45.0% | |
| ATCAATGTAGTAGGCAGGCT+AGG | - | chr5_4:11319212-11319231 | Msa0837340:CDS | 45.0% | |
| TCTCTTGGAGAAGGAACTCA+AGG | - | chr5_4:11317441-11317460 | Msa0837340:CDS | 45.0% | |
| CTCTTGGAGAAGGAACTCAA+GGG | - | chr5_4:11317442-11317461 | Msa0837340:CDS | 45.0% | |
| ! | TGAAATTCTGGCTGAAACCC+AGG | - | chr5_4:11317484-11317503 | Msa0837340:CDS | 45.0% |
| !! | GCTTAGTTCACTTTTGGAGG+AGG | - | chr5_4:11317803-11317822 | Msa0837340:CDS | 45.0% |
| ! | GGTGCTTCTTAGCTCTCTAT+TGG | - | chr5_4:11318102-11318121 | Msa0837340:CDS | 45.0% |
| TTGGGACTGTGAAATTGGGA+TGG | - | chr5_4:11318121-11318140 | Msa0837340:CDS | 45.0% | |
| TGGGACTGTGAAATTGGGAT+GGG | - | chr5_4:11318122-11318141 | Msa0837340:CDS | 45.0% | |
| GTTAGAATTAGTCCCCTTGC+TGG | + | chr5_4:11318156-11318175 | None:intergenic | 45.0% | |
| !! | TGTCCCAACACCGATTCAAA+TGG | - | chr5_4:11318181-11318200 | Msa0837340:CDS | 45.0% |
| !! | GTCCCAACACCGATTCAAAT+GGG | - | chr5_4:11318182-11318201 | Msa0837340:CDS | 45.0% |
| ! | CACCCATTTGAATCGGTGTT+GGG | + | chr5_4:11318187-11318206 | None:intergenic | 45.0% |
| GAATGCGCACCCATTTGAAT+CGG | + | chr5_4:11318194-11318213 | None:intergenic | 45.0% | |
| GCATCGAAGGATTGCAAGTT+TGG | + | chr5_4:11318266-11318285 | None:intergenic | 45.0% | |
| ATCCTTCGATGCTACCATTC+AGG | - | chr5_4:11318274-11318293 | Msa0837340:CDS | 45.0% | |
| ! | AAGAGAGTTGATCACCCTGT+TGG | + | chr5_4:11318306-11318325 | None:intergenic | 45.0% |
| GTGATCAACTCTCTTGCTCA+AGG | - | chr5_4:11318311-11318330 | Msa0837340:CDS | 45.0% | |
| GAGTCACTAGGAGAAGTTAC+CGG | - | chr5_4:11318359-11318378 | Msa0837340:CDS | 45.0% | |
| GTTCATGTCGAGAAGACTTC+CGG | + | chr5_4:11318381-11318400 | None:intergenic | 45.0% | |
| AAGTCTTCTCGACATGAACC+AGG | - | chr5_4:11318382-11318401 | Msa0837340:CDS | 45.0% | |
| CATGAACCAGGAAGTTGTCA+AGG | - | chr5_4:11318394-11318413 | Msa0837340:CDS | 45.0% | |
| GAATGACCTTGACAACTTCC+TGG | + | chr5_4:11318403-11318422 | None:intergenic | 45.0% | |
| GGAAGTTGTCAAGGTCATTC+TGG | - | chr5_4:11318403-11318422 | Msa0837340:intron | 45.0% | |
| CTCGAAAAAATCCTCCACCA+AGG | + | chr5_4:11318474-11318493 | None:intergenic | 45.0% | |
| CGAGAATAGTCTCCAGACAT+TGG | - | chr5_4:11318490-11318509 | Msa0837340:intron | 45.0% | |
| !!! | AGCTGTGTTGATTTTCTCGG+TGG | - | chr5_4:11318838-11318857 | Msa0837340:intron | 45.0% |
| !!! | TGTGTTGATTTTCTCGGTGG+TGG | - | chr5_4:11318841-11318860 | Msa0837340:intron | 45.0% |
| TGCCAAAGCTGTTACAACAG+GGG | + | chr5_4:11318885-11318904 | None:intergenic | 45.0% | |
| CTGCCAAAGCTGTTACAACA+GGG | + | chr5_4:11318886-11318905 | None:intergenic | 45.0% | |
| ! | CTGTTGTAACAGCTTTGGCA+GGG | - | chr5_4:11318885-11318904 | Msa0837340:intron | 45.0% |
| ! | TGTTGTAACAGCTTTGGCAG+GGG | - | chr5_4:11318886-11318905 | Msa0837340:intron | 45.0% |
| GCTGTTCCAATAGGCTCATT+TGG | - | chr5_4:11318914-11318933 | Msa0837340:intron | 45.0% | |
| AGCTGATCAATGTAGTAGGC+AGG | - | chr5_4:11319207-11319226 | Msa0837340:CDS | 45.0% | |
| ATCAATGTAGTAGGCAGGCT+AGG | - | chr5_4:11319212-11319231 | Msa0837340:CDS | 45.0% | |
| GACTGTGAAATTGGGATGGG+AGG | - | chr5_4:11318125-11318144 | Msa0837340:CDS | 50.0% | |
| GCACCCATTTGAATCGGTGT+TGG | + | chr5_4:11318188-11318207 | None:intergenic | 50.0% | |
| GGGTGCGCATTCTCTTTATG+CGG | - | chr5_4:11318202-11318221 | Msa0837340:CDS | 50.0% | |
| ! | CTCCTGAATGGTAGCATCGA+AGG | + | chr5_4:11318279-11318298 | None:intergenic | 50.0% |
| CTCTCTTGCTCAAGGGATTG+AGG | - | chr5_4:11318319-11318338 | Msa0837340:CDS | 50.0% | |
| !! | GGATCGTGACTTGTTCTCCT+TGG | - | chr5_4:11318454-11318473 | Msa0837340:intron | 50.0% |
| !! | TCGTGACTTGTTCTCCTTGG+TGG | - | chr5_4:11318457-11318476 | Msa0837340:intron | 50.0% |
| !! | TGACTTGTTCTCCTTGGTGG+AGG | - | chr5_4:11318460-11318479 | Msa0837340:intron | 50.0% |
| !! | AGCGCGCGAAAAACTTGTTG+CGG | - | chr5_4:11318547-11318566 | Msa0837340:intron | 50.0% |
| TTCTTCAGTAAAGGGGTCCC+CGG | + | chr5_4:11318672-11318691 | None:intergenic | 50.0% | |
| CAAAGCTGTTACAACAGGGG+GGG | + | chr5_4:11318882-11318901 | None:intergenic | 50.0% | |
| CCAAAGCTGTTACAACAGGG+GGG | + | chr5_4:11318883-11318902 | None:intergenic | 50.0% | |
| GCCAAAGCTGTTACAACAGG+GGG | + | chr5_4:11318884-11318903 | None:intergenic | 50.0% | |
| CCTGCCAAAGCTGTTACAAC+AGG | + | chr5_4:11318887-11318906 | None:intergenic | 50.0% | |
| ! | CCTGTTGTAACAGCTTTGGC+AGG | - | chr5_4:11318884-11318903 | Msa0837340:intron | 50.0% |
| GACTGTGAAATTGGGATGGG+AGG | - | chr5_4:11318125-11318144 | Msa0837340:CDS | 50.0% | |
| GCACCCATTTGAATCGGTGT+TGG | + | chr5_4:11318188-11318207 | None:intergenic | 50.0% | |
| GGGTGCGCATTCTCTTTATG+CGG | - | chr5_4:11318202-11318221 | Msa0837340:CDS | 50.0% | |
| ! | CTCCTGAATGGTAGCATCGA+AGG | + | chr5_4:11318279-11318298 | None:intergenic | 50.0% |
| CTCTCTTGCTCAAGGGATTG+AGG | - | chr5_4:11318319-11318338 | Msa0837340:CDS | 50.0% | |
| !! | GGATCGTGACTTGTTCTCCT+TGG | - | chr5_4:11318454-11318473 | Msa0837340:intron | 50.0% |
| !! | TCGTGACTTGTTCTCCTTGG+TGG | - | chr5_4:11318457-11318476 | Msa0837340:intron | 50.0% |
| !! | TGACTTGTTCTCCTTGGTGG+AGG | - | chr5_4:11318460-11318479 | Msa0837340:intron | 50.0% |
| !! | AGCGCGCGAAAAACTTGTTG+CGG | - | chr5_4:11318547-11318566 | Msa0837340:intron | 50.0% |
| TTCTTCAGTAAAGGGGTCCC+CGG | + | chr5_4:11318672-11318691 | None:intergenic | 50.0% | |
| CAAAGCTGTTACAACAGGGG+GGG | + | chr5_4:11318882-11318901 | None:intergenic | 50.0% | |
| CCAAAGCTGTTACAACAGGG+GGG | + | chr5_4:11318883-11318902 | None:intergenic | 50.0% | |
| GCCAAAGCTGTTACAACAGG+GGG | + | chr5_4:11318884-11318903 | None:intergenic | 50.0% | |
| CCTGCCAAAGCTGTTACAAC+AGG | + | chr5_4:11318887-11318906 | None:intergenic | 50.0% | |
| ! | CCTGTTGTAACAGCTTTGGC+AGG | - | chr5_4:11318884-11318903 | Msa0837340:intron | 50.0% |
| ATGGGAGGTCAGTCCAGCAA+GGG | - | chr5_4:11318140-11318159 | Msa0837340:CDS | 55.0% | |
| ! | CATTCAGGAGCGCACCAACA+GGG | - | chr5_4:11318289-11318308 | Msa0837340:CDS | 55.0% |
| CCCCCCTGTTGTAACAGCTT+TGG | - | chr5_4:11318880-11318899 | Msa0837340:intron | 55.0% | |
| ! | AACAGCTTTGGCAGGGGCAT+TGG | - | chr5_4:11318892-11318911 | Msa0837340:intron | 55.0% |
| !! | GGGGCATTGGCTGTTCCAAT+AGG | - | chr5_4:11318905-11318924 | Msa0837340:intron | 55.0% |
| GTAGGCAGGCTAGGAAAGCA+AGG | - | chr5_4:11319221-11319240 | Msa0837340:CDS | 55.0% | |
| GGCTAGGAAAGCAAGGACAG+TGG | - | chr5_4:11319228-11319247 | Msa0837340:CDS | 55.0% | |
| ATGGGAGGTCAGTCCAGCAA+GGG | - | chr5_4:11318140-11318159 | Msa0837340:CDS | 55.0% | |
| ! | CATTCAGGAGCGCACCAACA+GGG | - | chr5_4:11318289-11318308 | Msa0837340:CDS | 55.0% |
| CCCCCCTGTTGTAACAGCTT+TGG | - | chr5_4:11318880-11318899 | Msa0837340:intron | 55.0% | |
| ! | AACAGCTTTGGCAGGGGCAT+TGG | - | chr5_4:11318892-11318911 | Msa0837340:intron | 55.0% |
| !! | GGGGCATTGGCTGTTCCAAT+AGG | - | chr5_4:11318905-11318924 | Msa0837340:intron | 55.0% |
| GTAGGCAGGCTAGGAAAGCA+AGG | - | chr5_4:11319221-11319240 | Msa0837340:CDS | 55.0% | |
| GGCTAGGAAAGCAAGGACAG+TGG | - | chr5_4:11319228-11319247 | Msa0837340:CDS | 55.0% | |
| GATGGGAGGTCAGTCCAGCA+AGG | - | chr5_4:11318139-11318158 | Msa0837340:CDS | 60.0% | |
| TGGGAGGTCAGTCCAGCAAG+GGG | - | chr5_4:11318141-11318160 | Msa0837340:CDS | 60.0% | |
| CCTGTTGGTGCGCTCCTGAA+TGG | + | chr5_4:11318291-11318310 | None:intergenic | 60.0% | |
| ! | CCATTCAGGAGCGCACCAAC+AGG | - | chr5_4:11318288-11318307 | Msa0837340:CDS | 60.0% |
| GATGGGAGGTCAGTCCAGCA+AGG | - | chr5_4:11318139-11318158 | Msa0837340:CDS | 60.0% | |
| TGGGAGGTCAGTCCAGCAAG+GGG | - | chr5_4:11318141-11318160 | Msa0837340:CDS | 60.0% | |
| CCTGTTGGTGCGCTCCTGAA+TGG | + | chr5_4:11318291-11318310 | None:intergenic | 60.0% | |
| ! | CCATTCAGGAGCGCACCAAC+AGG | - | chr5_4:11318288-11318307 | Msa0837340:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 11317294 | 11319282 | 11317294 | ID=Msa0837340;Name=Msa0837340 |
| chr5_4 | mRNA | 11317294 | 11319282 | 11317294 | ID=Msa0837340-mRNA-1;Parent=Msa0837340;Name=Msa0837340-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|1|1|1|2|0|445 |
| chr5_4 | exon | 11319071 | 11319282 | 11319071 | ID=Msa0837340-mRNA-1:exon:4942;Parent=Msa0837340-mRNA-1 |
| chr5_4 | exon | 11317294 | 11318419 | 11317294 | ID=Msa0837340-mRNA-1:exon:4941;Parent=Msa0837340-mRNA-1 |
| chr5_4 | CDS | 11319071 | 11319282 | 11319071 | ID=Msa0837340-mRNA-1:cds;Parent=Msa0837340-mRNA-1 |
| chr5_4 | CDS | 11317294 | 11318419 | 11317294 | ID=Msa0837340-mRNA-1:cds;Parent=Msa0837340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
