Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757580 | XP_003593822.2 | 92.982 | 114 | 8 | 0 | 197 | 310 | 607 | 720 | 5.54e-59 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757580 | sp|Q9C7R6|PUB17_ARATH | 66.372 | 113 | 33 | 2 | 197 | 309 | 619 | 726 | 1.32e-35 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757580 | G7L051 | 51.488 | 336 | 56 | 7 | 1 | 250 | 65 | 379 | 7.89e-87 | 274 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0757580 | Msa0864600 | 0.945484 | 2.798616e-104 | -8.615850e-47 |
| Msa0337510 | Msa0757580 | 0.811366 | 7.257669e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757580 | MtrunA17_Chr2g0284461 | 92.982 | 114 | 8 | 0 | 197 | 310 | 607 | 720 | 5.10e-63 | 211 |
| Msa0757580 | MtrunA17_Chr3g0139641 | 80.000 | 115 | 16 | 2 | 189 | 296 | 18 | 132 | 5.76e-54 | 173 |
| Msa0757580 | MtrunA17_Chr2g0314681 | 70.408 | 98 | 19 | 2 | 12 | 100 | 132 | 228 | 7.48e-34 | 126 |
| Msa0757580 | MtrunA17_Chr7g0235141 | 92.157 | 51 | 4 | 0 | 200 | 250 | 5 | 55 | 5.57e-25 | 95.1 |
| Msa0757580 | MtrunA17_Chr5g0397801 | 55.000 | 100 | 22 | 3 | 107 | 183 | 24 | 123 | 4.53e-23 | 96.3 |
| Msa0757580 | MtrunA17_Chr8g0386391 | 90.698 | 43 | 4 | 0 | 92 | 134 | 24 | 66 | 7.06e-20 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757580 | AT1G29340.1 | 66.372 | 113 | 33 | 2 | 197 | 309 | 619 | 726 | 1.34e-36 | 139 |
| Msa0757580 | AT1G78620.1 | 65.909 | 88 | 21 | 1 | 12 | 90 | 141 | 228 | 2.50e-27 | 109 |
| Msa0757580 | AT1G78620.2 | 66.667 | 87 | 20 | 1 | 13 | 90 | 151 | 237 | 4.75e-27 | 108 |
| Msa0757580 | AT4G20330.1 | 43.357 | 143 | 58 | 3 | 103 | 224 | 37 | 177 | 5.02e-21 | 91.3 |
| Msa0757580 | AT4G21010.1 | 50.649 | 77 | 19 | 1 | 123 | 180 | 51 | 127 | 4.93e-14 | 71.2 |
Find 72 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGCCACCACCGGAGTATT+AGG | 0.268237 | 5_2:+12526370 | None:intergenic |
| CTTCAAACCTTACTATTTAC+CGG | 0.297826 | 5_2:-12524693 | Msa0757580:CDS |
| AGGGGTCCAGGGAGTGTAAT+TGG | 0.309595 | 5_2:-12527867 | Msa0757580:CDS |
| TGCCCGTCGAATGCTACTTT+TGG | 0.331505 | 5_2:+12525619 | None:intergenic |
| TCTCTACATTATGGTGGATT+AGG | 0.362130 | 5_2:-12524606 | Msa0757580:CDS |
| TACTTTAGAGTTGATTGGTT+TGG | 0.363493 | 5_2:-12527946 | Msa0757580:intron |
| CGCTTCATCTGAGCACCAAC+GGG | 0.368774 | 5_2:+12526253 | None:intergenic |
| CTTTGTCCCGGTAAATAGTA+AGG | 0.389229 | 5_2:+12524686 | None:intergenic |
| GAAAATGCATCTCTACATTA+TGG | 0.412312 | 5_2:-12524615 | Msa0757580:CDS |
| TGCAATTGAAAGGGTGGTTA+AGG | 0.415531 | 5_2:-12524736 | Msa0757580:CDS |
| GTATTATACCACTATATTAC+AGG | 0.417054 | 5_2:+12524492 | None:intergenic |
| CTAGCAATTCAGCTCAAACT+AGG | 0.421052 | 5_2:-12524566 | Msa0757580:CDS |
| AGAAAAGGAAGAAGGGGTCC+AGG | 0.424572 | 5_2:-12527879 | Msa0757580:CDS |
| GCTGCAAATGCTTCATCAAA+TGG | 0.435679 | 5_2:-12526352 | Msa0757580:CDS |
| TAGGGTACAACTGCAACAAA+AGG | 0.444206 | 5_2:-12527915 | Msa0757580:CDS |
| GTTAAGGCACCAGCTATTGC+CGG | 0.446225 | 5_2:-12524720 | Msa0757580:CDS |
| TAGTAAGGTTTGAAGTAATC+CGG | 0.457922 | 5_2:+12524701 | None:intergenic |
| TTTCTCAGCTTTGGAGACTT+GGG | 0.460386 | 5_2:-12527782 | Msa0757580:CDS |
| ACCTCCACTCCGGCATAACT+CGG | 0.476880 | 5_2:+12524764 | None:intergenic |
| CTGAGAAAAGAAAAGGAAGA+AGG | 0.478719 | 5_2:-12527887 | Msa0757580:CDS |
| AGGGATTCAAGCTTTGCTGC+AGG | 0.485529 | 5_2:-12524546 | Msa0757580:CDS |
| AGAATTGCGTCGAGCAAAGT+TGG | 0.491272 | 5_2:-12526403 | Msa0757580:CDS |
| TGAAGTAATCCGGCAATAGC+TGG | 0.491668 | 5_2:+12524711 | None:intergenic |
| AGGGTACAACTGCAACAAAA+GGG | 0.492330 | 5_2:-12527914 | Msa0757580:CDS |
| AAGTAGCATTCGACGGGCAA+CGG | 0.492837 | 5_2:-12525615 | Msa0757580:CDS |
| CAGCATTGCCCGAGTTATGC+CGG | 0.494015 | 5_2:-12524773 | Msa0757580:CDS |
| GAGGAAAGCACAAACGCAAC+CGG | 0.496460 | 5_2:+12527833 | None:intergenic |
| TTCAAACCTTACTATTTACC+GGG | 0.497622 | 5_2:-12524692 | Msa0757580:CDS |
| GGGGTTGCTGAGAAAAGAAA+AGG | 0.497980 | 5_2:-12527894 | Msa0757580:CDS |
| CGGGCAACGGTTCTCTTACA+AGG | 0.513416 | 5_2:-12525602 | Msa0757580:intron |
| GGATTCAAGCTTTGCTGCAG+GGG | 0.516848 | 5_2:-12524544 | Msa0757580:CDS |
| ACATCTAGATCGCTTTGTCC+CGG | 0.518597 | 5_2:+12524674 | None:intergenic |
| GGGATTCAAGCTTTGCTGCA+GGG | 0.523093 | 5_2:-12524545 | Msa0757580:CDS |
| TTGTGGAACACCGACGGGTA+AGG | 0.523691 | 5_2:-12524808 | Msa0757580:CDS |
| GAGGTTCAGCTGCAATTGAA+AGG | 0.524042 | 5_2:-12524746 | Msa0757580:CDS |
| GAAGCATTTGCAGCCACCAC+CGG | 0.530483 | 5_2:+12526361 | None:intergenic |
| TAGCAATTCAGCTCAAACTA+GGG | 0.535704 | 5_2:-12524565 | Msa0757580:CDS |
| CTGTATCCAATTACACTCCC+TGG | 0.541458 | 5_2:+12527861 | None:intergenic |
| AACCAAAAGTAGCATTCGAC+GGG | 0.544882 | 5_2:-12525621 | Msa0757580:CDS |
| TGAGACTGTGTCACTCAACT+TGG | 0.545176 | 5_2:+12527740 | None:intergenic |
| ATGCATTGTGGAACACCGAC+GGG | 0.546446 | 5_2:-12524813 | Msa0757580:CDS |
| CATTATGGTGGATTAGGTGT+AGG | 0.550138 | 5_2:-12524600 | Msa0757580:CDS |
| GAAAAGGAAGAAGGGGTCCA+GGG | 0.558281 | 5_2:-12527878 | Msa0757580:CDS |
| TGTTATTGATCTATTGCTTG+AGG | 0.558507 | 5_2:-12526230 | Msa0757580:intron |
| GCAAGATGGTTCTACCTATG+TGG | 0.563290 | 5_2:-12525454 | Msa0757580:intron |
| TGAGAAAAGAAAAGGAAGAA+GGG | 0.576058 | 5_2:-12527886 | Msa0757580:CDS |
| CCTCCACTCCGGCATAACTC+GGG | 0.578231 | 5_2:+12524765 | None:intergenic |
| AAAACCTAATACTCCGGTGG+TGG | 0.582600 | 5_2:-12526374 | Msa0757580:CDS |
| TTCAGCTGCAATTGAAAGGG+TGG | 0.584405 | 5_2:-12524742 | Msa0757580:CDS |
| CCCGAGTTATGCCGGAGTGG+AGG | 0.588750 | 5_2:-12524765 | Msa0757580:CDS |
| TAGCAGAAAACCTAATACTC+CGG | 0.589094 | 5_2:-12526380 | Msa0757580:CDS |
| AGGTTCAGCTGCAATTGAAA+GGG | 0.592747 | 5_2:-12524745 | Msa0757580:CDS |
| ACGCTTCATCTGAGCACCAA+CGG | 0.595575 | 5_2:+12526252 | None:intergenic |
| GATGCATTGTGGAACACCGA+CGG | 0.596797 | 5_2:-12524814 | Msa0757580:CDS |
| GTAATTGGATACAGTGCTGC+CGG | 0.603510 | 5_2:-12527852 | Msa0757580:CDS |
| AAACCAAAAGTAGCATTCGA+CGG | 0.604360 | 5_2:-12525622 | Msa0757580:CDS |
| ATTAGGTGTAGGCTATGCAT+TGG | 0.609651 | 5_2:-12524589 | Msa0757580:CDS |
| GGGTACAACTGCAACAAAAG+GGG | 0.622242 | 5_2:-12527913 | Msa0757580:CDS |
| CTATATTACAGGTACAGAGA+TGG | 0.627725 | 5_2:+12524503 | None:intergenic |
| ACTGCATTCTCCTTACCCGT+CGG | 0.632613 | 5_2:+12524798 | None:intergenic |
| GAGAAAAGAAAAGGAAGAAG+GGG | 0.634746 | 5_2:-12527885 | Msa0757580:CDS |
| AATGCATCTCTACATTATGG+TGG | 0.635137 | 5_2:-12524612 | Msa0757580:CDS |
| ACAGGTACAGAGATGGACAT+TGG | 0.635671 | 5_2:+12524510 | None:intergenic |
| AAGTGGTAACAAAACCACAT+AGG | 0.643784 | 5_2:+12525440 | None:intergenic |
| AAACACTCTAGCAAGTGAAG+CGG | 0.657985 | 5_2:+12524647 | None:intergenic |
| GCTTCATCTGAGCACCAACG+GGG | 0.666699 | 5_2:+12526254 | None:intergenic |
| AATTCTCAAATGATACTGAG+AGG | 0.667400 | 5_2:-12526306 | Msa0757580:CDS |
| TTGCAGCTGAACCTCCACTC+CGG | 0.668193 | 5_2:+12524754 | None:intergenic |
| TTGATAGGAATGATGCATTG+TGG | 0.674576 | 5_2:-12524825 | Msa0757580:intron |
| TTGCCCGAGTTATGCCGGAG+TGG | 0.686988 | 5_2:-12524768 | Msa0757580:CDS |
| CTTCATCTGAGCACCAACGG+GGG | 0.696908 | 5_2:+12526255 | None:intergenic |
| CAGAAAACCTAATACTCCGG+TGG | 0.697637 | 5_2:-12526377 | Msa0757580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTAATCCATTATATT+GGG | + | chr5_2:12525361-12525380 | None:intergenic | 10.0% |
| !! | AAAATATTAATCCATTATAT+TGG | + | chr5_2:12525362-12525381 | None:intergenic | 10.0% |
| !!! | ATTAATATTTTACTGAATAA+GGG | - | chr5_2:12525371-12525390 | Msa0757580:intron | 10.0% |
| !!! | ATATTTGAATTTTTAGTTAG+TGG | - | chr5_2:12525326-12525345 | Msa0757580:intron | 15.0% |
| !!! | GATTAATATTTTACTGAATA+AGG | - | chr5_2:12525370-12525389 | Msa0757580:intron | 15.0% |
| !! | TGAAAAAAAAAATGAAACAT+TGG | + | chr5_2:12525463-12525482 | None:intergenic | 15.0% |
| !!! | TTTCTTCTACATTATTTTAA+TGG | - | chr5_2:12526990-12527009 | Msa0757580:intron | 15.0% |
| !!! | TTTTATACTTTAGAGTTGAT+TGG | - | chr5_2:12524515-12524534 | Msa0757580:CDS | 20.0% |
| !!! | TAGTTAACTCTTTCTTTTTT+TGG | - | chr5_2:12524786-12524805 | Msa0757580:CDS | 20.0% |
| !!! | AAAATTTTGATATCCATCAA+AGG | + | chr5_2:12524865-12524884 | None:intergenic | 20.0% |
| !! | TGTTTCATTGTGTTAAAAAT+TGG | - | chr5_2:12524994-12525013 | Msa0757580:intron | 20.0% |
| !!! | GACATTAAGTTTTGAATTTT+AGG | - | chr5_2:12525065-12525084 | Msa0757580:intron | 20.0% |
| !! | ATTAAAGTATGCTAAACAAT+TGG | - | chr5_2:12525131-12525150 | Msa0757580:intron | 20.0% |
| !! | TTTACAGAGAAATAAACAAA+TGG | + | chr5_2:12525494-12525513 | None:intergenic | 20.0% |
| !!! | TTTTAATTATTGTTAGTGAC+TGG | - | chr5_2:12526301-12526320 | Msa0757580:CDS | 20.0% |
| !! | GAACAAAGAAAAAAAATTGA+AGG | + | chr5_2:12527547-12527566 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTTTCTTTGTTC+AGG | - | chr5_2:12527547-12527566 | Msa0757580:intron | 20.0% |
| !! | TAGATATATGTTAGTTTCCA+AGG | - | chr5_2:12524810-12524829 | Msa0757580:CDS | 25.0% |
| ! | AAAATTGGTTGACATTCATT+TGG | - | chr5_2:12525009-12525028 | Msa0757580:intron | 25.0% |
| !! | GTTTAGCATACTTTAATTTC+AGG | + | chr5_2:12525128-12525147 | None:intergenic | 25.0% |
| ! | GTTTCAAAAATTCCAAATCA+TGG | + | chr5_2:12525240-12525259 | None:intergenic | 25.0% |
| ! | GTTCAAATGCACAATTTATT+TGG | - | chr5_2:12525278-12525297 | Msa0757580:intron | 25.0% |
| ! | CATTAAGAAAGGATATAAAC+TGG | - | chr5_2:12525707-12525726 | Msa0757580:intron | 25.0% |
| !!! | AGAGAAAGTACAAACTTTTT+GGG | + | chr5_2:12525812-12525831 | None:intergenic | 25.0% |
| ! | AATGGAAGAAATTCAAAAAC+TGG | - | chr5_2:12526132-12526151 | Msa0757580:intron | 25.0% |
| ! | TAGTAGTTTCAATTTGCAAT+TGG | + | chr5_2:12526471-12526490 | None:intergenic | 25.0% |
| ! | CAAATTGAAACTACTATGTT+TGG | - | chr5_2:12526475-12526494 | Msa0757580:intron | 25.0% |
| ! | ATAGCATAATTTATTTGCTC+TGG | + | chr5_2:12526780-12526799 | None:intergenic | 25.0% |
| ! | AATTATGCTATGTTGATATG+AGG | - | chr5_2:12526789-12526808 | Msa0757580:intron | 25.0% |
| !! | ATGAAGAAGTTATTTGCTAA+AGG | + | chr5_2:12526937-12526956 | None:intergenic | 25.0% |
| !!! | ACATTATTTTAATGGCAAGA+TGG | - | chr5_2:12526998-12527017 | Msa0757580:intron | 25.0% |
| !! | TACATAACATACATTAGTCT+CGG | + | chr5_2:12527248-12527267 | None:intergenic | 25.0% |
| ! | TGTATGTTATGTATGATTGT+AGG | - | chr5_2:12527255-12527274 | Msa0757580:intron | 25.0% |
| !!! | GCATTTGTTATAACTTCATA+AGG | + | chr5_2:12527342-12527361 | None:intergenic | 25.0% |
| !!! | TTCAGAAGAGTATTTTGAAA+AGG | + | chr5_2:12527395-12527414 | None:intergenic | 25.0% |
| ! | AAAGTTTATCACTGCAAATT+AGG | + | chr5_2:12527491-12527510 | None:intergenic | 25.0% |
| !!! | ATCTTTTTGTTTGCTTTGTT+TGG | - | chr5_2:12527617-12527636 | Msa0757580:intron | 25.0% |
| !! | TACTTTAGAGTTGATTGGTT+TGG | - | chr5_2:12524520-12524539 | Msa0757580:CDS | 30.0% |
| !! | ATTGGTTTGGTGTTTGTTTA+GGG | - | chr5_2:12524533-12524552 | Msa0757580:CDS | 30.0% |
| TGAGAAAAGAAAAGGAAGAA+GGG | - | chr5_2:12524580-12524599 | Msa0757580:CDS | 30.0% | |
| !!! | AGTTTTAAGTATGAAGTTCG+GGG | + | chr5_2:12524842-12524861 | None:intergenic | 30.0% |
| !!! | GAGTTTTAAGTATGAAGTTC+GGG | + | chr5_2:12524843-12524862 | None:intergenic | 30.0% |
| !!! | GGAGTTTTAAGTATGAAGTT+CGG | + | chr5_2:12524844-12524863 | None:intergenic | 30.0% |
| CATACTTAAAACTCCTTTGA+TGG | - | chr5_2:12524849-12524868 | Msa0757580:intron | 30.0% | |
| ! | TGTCCTGTTTGAAATTAAAG+TGG | - | chr5_2:12524906-12524925 | Msa0757580:intron | 30.0% |
| ! | GTTCCACTTTAATTTCAAAC+AGG | + | chr5_2:12524912-12524931 | None:intergenic | 30.0% |
| GAAATTAAAGTGGAACAAGA+AGG | - | chr5_2:12524916-12524935 | Msa0757580:intron | 30.0% | |
| CACAATGAAACAATCATCAA+TGG | + | chr5_2:12524986-12525005 | None:intergenic | 30.0% | |
| ATTTGGTTGTGATTCCAAAT+TGG | - | chr5_2:12525026-12525045 | Msa0757580:intron | 30.0% | |
| TTTGGTTGTGATTCCAAATT+GGG | - | chr5_2:12525027-12525046 | Msa0757580:intron | 30.0% | |
| CCATTGAACATGTTTATCAA+AGG | + | chr5_2:12525174-12525193 | None:intergenic | 30.0% | |
| CCTTTGATAAACATGTTCAA+TGG | - | chr5_2:12525171-12525190 | Msa0757580:intron | 30.0% | |
| !!! | ATAAGGGTTTTGAAGTTTGT+AGG | - | chr5_2:12525387-12525406 | Msa0757580:intron | 30.0% |
| ! | TTTGAAGTTTGTAGGATTGA+TGG | - | chr5_2:12525395-12525414 | Msa0757580:intron | 30.0% |
| ! | GAACTATGATATAAAAGTGC+AGG | - | chr5_2:12525431-12525450 | Msa0757580:intron | 30.0% |
| TTCCTTTGTGCATATTTAGA+AGG | - | chr5_2:12525577-12525596 | Msa0757580:intron | 30.0% | |
| ATCCTTCTAAATATGCACAA+AGG | + | chr5_2:12525582-12525601 | None:intergenic | 30.0% | |
| TTTGTGCATATTTAGAAGGA+TGG | - | chr5_2:12525581-12525600 | Msa0757580:intron | 30.0% | |
| GCAACAATTTCTGATTCAAA+TGG | + | chr5_2:12525638-12525657 | None:intergenic | 30.0% | |
| ATACATGGTGATATCATGTA+TGG | - | chr5_2:12525682-12525701 | Msa0757580:intron | 30.0% | |
| CATGTATGGAACATTAAGAA+AGG | - | chr5_2:12525696-12525715 | Msa0757580:intron | 30.0% | |
| !! | CAGAGAAAGTACAAACTTTT+TGG | + | chr5_2:12525813-12525832 | None:intergenic | 30.0% |
| AAAGTTTGTACTTTCTCTGA+AGG | - | chr5_2:12525814-12525833 | Msa0757580:intron | 30.0% | |
| TCTGAAGGACTAATAGATTT+AGG | - | chr5_2:12525829-12525848 | Msa0757580:intron | 30.0% | |
| ! | GGTTTAATGAGTTATTTCAG+TGG | - | chr5_2:12525850-12525869 | Msa0757580:intron | 30.0% |
| ! | AAGCACATTTGAAATGTTTG+CGG | - | chr5_2:12525986-12526005 | Msa0757580:intron | 30.0% |
| AATTCTCAAATGATACTGAG+AGG | - | chr5_2:12526160-12526179 | Msa0757580:intron | 30.0% | |
| TGTTATTGATCTATTGCTTG+AGG | - | chr5_2:12526236-12526255 | Msa0757580:CDS | 30.0% | |
| ! | TCTATTGCTTGAGGTAATTT+TGG | - | chr5_2:12526245-12526264 | Msa0757580:CDS | 30.0% |
| TAATTATTGTTAGTGACTGG+CGG | - | chr5_2:12526304-12526323 | Msa0757580:CDS | 30.0% | |
| ! | CCTCAAAATTCTTTTAAGCT+AGG | + | chr5_2:12526419-12526438 | None:intergenic | 30.0% |
| ! | CCTAGCTTAAAAGAATTTTG+AGG | - | chr5_2:12526416-12526435 | Msa0757580:CDS | 30.0% |
| ! | TGGTGACTTTTAAGCTATAA+TGG | + | chr5_2:12526451-12526470 | None:intergenic | 30.0% |
| AATGAAGTTCTCGATATGTT+TGG | + | chr5_2:12526608-12526627 | None:intergenic | 30.0% | |
| GTAAGCTATCTTAAGTAACA+TGG | + | chr5_2:12526669-12526688 | None:intergenic | 30.0% | |
| ! | TCGTCAAAACCATATTGATT+TGG | - | chr5_2:12526717-12526736 | Msa0757580:intron | 30.0% |
| !!! | ACCATATTGATTTGGTGTTT+TGG | - | chr5_2:12526725-12526744 | Msa0757580:intron | 30.0% |
| ACCAAAACACCAAATCAATA+TGG | + | chr5_2:12526729-12526748 | None:intergenic | 30.0% | |
| !! | TTTGCTTTGTTTGGATTGAT+AGG | - | chr5_2:12527626-12527645 | Msa0757580:intron | 30.0% |
| ! | TAGTAAGGTTTGAAGTAATC+CGG | + | chr5_2:12527768-12527787 | None:intergenic | 30.0% |
| CTTCAAACCTTACTATTTAC+CGG | - | chr5_2:12527773-12527792 | Msa0757580:CDS | 30.0% | |
| TTCAAACCTTACTATTTACC+GGG | - | chr5_2:12527774-12527793 | Msa0757580:CDS | 30.0% | |
| GAAAATGCATCTCTACATTA+TGG | - | chr5_2:12527851-12527870 | Msa0757580:CDS | 30.0% | |
| !! | GATTGGTTTGGTGTTTGTTT+AGG | - | chr5_2:12524532-12524551 | Msa0757580:CDS | 35.0% |
| CTGAGAAAAGAAAAGGAAGA+AGG | - | chr5_2:12524579-12524598 | Msa0757580:CDS | 35.0% | |
| GAGAAAAGAAAAGGAAGAAG+GGG | - | chr5_2:12524581-12524600 | Msa0757580:CDS | 35.0% | |
| ! | TGTGCTTTCCTCACAATTTT+TGG | - | chr5_2:12524644-12524663 | Msa0757580:CDS | 35.0% |
| !!! | TTCCTCACAATTTTTGGAGT+TGG | - | chr5_2:12524650-12524669 | Msa0757580:CDS | 35.0% |
| !! | ATTGTTTGTTAGCCTTTGCT+TGG | - | chr5_2:12524954-12524973 | Msa0757580:intron | 35.0% |
| AACTTAATGTCGTTGCACAT+GGG | + | chr5_2:12525056-12525075 | None:intergenic | 35.0% | |
| AAACTTAATGTCGTTGCACA+TGG | + | chr5_2:12525057-12525076 | None:intergenic | 35.0% | |
| ATGTTCAATGGCATGTTACA+TGG | - | chr5_2:12525183-12525202 | Msa0757580:intron | 35.0% | |
| !! | CTTGATGATGAACCATGATT+TGG | - | chr5_2:12525225-12525244 | Msa0757580:intron | 35.0% |
| GAACAAAATATGACTGTGAG+TGG | + | chr5_2:12525262-12525281 | None:intergenic | 35.0% | |
| ! | GACTAAAGTGCCCAATATAA+TGG | - | chr5_2:12525348-12525367 | Msa0757580:intron | 35.0% |
| TCAGAAATTGTTGCCAACTT+TGG | - | chr5_2:12525644-12525663 | Msa0757580:CDS | 35.0% | |
| CAGAAATTGTTGCCAACTTT+GGG | - | chr5_2:12525645-12525664 | Msa0757580:CDS | 35.0% | |
| ACAGCAGCACAATAATCTTA+AGG | - | chr5_2:12525734-12525753 | Msa0757580:intron | 35.0% | |
| AATCTTAAGGAGACAGAAAC+AGG | - | chr5_2:12525747-12525766 | Msa0757580:intron | 35.0% | |
| TAGCAGAAAACCTAATACTC+CGG | - | chr5_2:12526086-12526105 | Msa0757580:intron | 35.0% | |
| !! | TGATTTTGATGCATGAGATG+AGG | - | chr5_2:12526338-12526357 | Msa0757580:CDS | 35.0% |
| !! | GATTTTGATGCATGAGATGA+GGG | - | chr5_2:12526339-12526358 | Msa0757580:CDS | 35.0% |
| ACCAATGAAAGTCCACAATT+AGG | - | chr5_2:12526687-12526706 | Msa0757580:intron | 35.0% | |
| TCCTAATTGTGGACTTTCAT+TGG | + | chr5_2:12526691-12526710 | None:intergenic | 35.0% | |
| GACGAATCAATTCCTAATTG+TGG | + | chr5_2:12526702-12526721 | None:intergenic | 35.0% | |
| !!! | TTTTGGTTTGCTGATAGACA+CGG | - | chr5_2:12526742-12526761 | Msa0757580:intron | 35.0% |
| !! | AAGATGTTTTTGAGAGTCTG+AGG | - | chr5_2:12526818-12526837 | Msa0757580:intron | 35.0% |
| AAACCAAAAGTAGCATTCGA+CGG | - | chr5_2:12526844-12526863 | Msa0757580:intron | 35.0% | |
| AAGTGGTAACAAAACCACAT+AGG | + | chr5_2:12527029-12527048 | None:intergenic | 35.0% | |
| !!! | TGTGGTTTTGTTACCACTTT+TGG | - | chr5_2:12527030-12527049 | Msa0757580:intron | 35.0% |
| !! | GTTTTGTTACCACTTTTGGA+AGG | - | chr5_2:12527034-12527053 | Msa0757580:intron | 35.0% |
| !! | ACTTTTGGAAGGAGATTTCA+GGG | - | chr5_2:12527045-12527064 | Msa0757580:intron | 35.0% |
| ATTGAGATTTGTGTCGAAAG+TGG | - | chr5_2:12527097-12527116 | Msa0757580:intron | 35.0% | |
| !! | GGACTCATTTGGTGTTTATT+GGG | - | chr5_2:12527304-12527323 | Msa0757580:intron | 35.0% |
| !! | GACTCATTTGGTGTTTATTG+GGG | - | chr5_2:12527305-12527324 | Msa0757580:intron | 35.0% |
| TGTTCCATTAGTGCAGTATT+AGG | - | chr5_2:12527433-12527452 | Msa0757580:intron | 35.0% | |
| AAGTCCTAATACTGCACTAA+TGG | + | chr5_2:12527440-12527459 | None:intergenic | 35.0% | |
| TTTGTTCAGGACTATTGAGT+CGG | - | chr5_2:12527560-12527579 | Msa0757580:intron | 35.0% | |
| TTGATAGGAATGATGCATTG+TGG | - | chr5_2:12527641-12527660 | Msa0757580:intron | 35.0% | |
| AATGCATCTCTACATTATGG+TGG | - | chr5_2:12527854-12527873 | Msa0757580:CDS | 35.0% | |
| !! | TCTCTACATTATGGTGGATT+AGG | - | chr5_2:12527860-12527879 | Msa0757580:CDS | 35.0% |
| TAGCAATTCAGCTCAAACTA+GGG | - | chr5_2:12527901-12527920 | Msa0757580:CDS | 35.0% | |
| TAGGGTACAACTGCAACAAA+AGG | - | chr5_2:12524551-12524570 | Msa0757580:CDS | 40.0% | |
| AGGGTACAACTGCAACAAAA+GGG | - | chr5_2:12524552-12524571 | Msa0757580:CDS | 40.0% | |
| CTCCAACTCCAAAAATTGTG+AGG | + | chr5_2:12524655-12524674 | None:intergenic | 40.0% | |
| !!! | CTCACAATTTTTGGAGTTGG+AGG | - | chr5_2:12524653-12524672 | Msa0757580:CDS | 40.0% |
| !!! | AATTTTTGGAGTTGGAGGAG+CGG | - | chr5_2:12524658-12524677 | Msa0757580:CDS | 40.0% |
| !!! | TTTTCTCAGCTTTGGAGACT+TGG | - | chr5_2:12524683-12524702 | Msa0757580:CDS | 40.0% |
| !! | TTTCTCAGCTTTGGAGACTT+GGG | - | chr5_2:12524684-12524703 | Msa0757580:CDS | 40.0% |
| AGTGAGATAGGCAAAGCATA+TGG | - | chr5_2:12524749-12524768 | Msa0757580:CDS | 40.0% | |
| CAATGGAAGTAACCAAGCAA+AGG | + | chr5_2:12524969-12524988 | None:intergenic | 40.0% | |
| ! | GATTGATGGTTCAGTGAGAT+TGG | - | chr5_2:12525409-12525428 | Msa0757580:intron | 40.0% |
| ! | CACATTTGAAATGTTTGCGG+CGG | - | chr5_2:12525989-12526008 | Msa0757580:intron | 40.0% |
| GCTGCAAATGCTTCATCAAA+TGG | - | chr5_2:12526114-12526133 | Msa0757580:intron | 40.0% | |
| GTTTGGCTGAACATTGAGTT+AGG | - | chr5_2:12526492-12526511 | Msa0757580:intron | 40.0% | |
| TGAAGCTTCCACAAAATCAC+AGG | + | chr5_2:12526533-12526552 | None:intergenic | 40.0% | |
| AGTTCTCGATATGTTTGGCT+GGG | + | chr5_2:12526603-12526622 | None:intergenic | 40.0% | |
| AAGTTCTCGATATGTTTGGC+TGG | + | chr5_2:12526604-12526623 | None:intergenic | 40.0% | |
| AACCAAAAGTAGCATTCGAC+GGG | - | chr5_2:12526845-12526864 | Msa0757580:intron | 40.0% | |
| CTGAAATCTCCTTCCAAAAG+TGG | + | chr5_2:12527046-12527065 | None:intergenic | 40.0% | |
| !! | CACTTTTGGAAGGAGATTTC+AGG | - | chr5_2:12527044-12527063 | Msa0757580:intron | 40.0% |
| CAATGGTAGAAACAAATCCC+CGG | - | chr5_2:12527202-12527221 | Msa0757580:intron | 40.0% | |
| ! | ATACATTAGTCTCGGCATTG+TGG | + | chr5_2:12527240-12527259 | None:intergenic | 40.0% |
| CTGATGTGGAGGAATTTGAT+GGG | - | chr5_2:12527283-12527302 | Msa0757580:intron | 40.0% | |
| GGAATTTGATGGGACTCATT+TGG | - | chr5_2:12527293-12527312 | Msa0757580:intron | 40.0% | |
| !! | GGGACTCATTTGGTGTTTAT+TGG | - | chr5_2:12527303-12527322 | Msa0757580:intron | 40.0% |
| TTGTTCAGGACTATTGAGTC+GGG | - | chr5_2:12527561-12527580 | Msa0757580:intron | 40.0% | |
| AGGTTCAGCTGCAATTGAAA+GGG | - | chr5_2:12527721-12527740 | Msa0757580:intron | 40.0% | |
| TGCAATTGAAAGGGTGGTTA+AGG | - | chr5_2:12527730-12527749 | Msa0757580:intron | 40.0% | |
| CTTTGTCCCGGTAAATAGTA+AGG | + | chr5_2:12527783-12527802 | None:intergenic | 40.0% | |
| AAACACTCTAGCAAGTGAAG+CGG | + | chr5_2:12527822-12527841 | None:intergenic | 40.0% | |
| !! | CATTATGGTGGATTAGGTGT+AGG | - | chr5_2:12527866-12527885 | Msa0757580:CDS | 40.0% |
| ATTAGGTGTAGGCTATGCAT+TGG | - | chr5_2:12527877-12527896 | Msa0757580:CDS | 40.0% | |
| CTAGCAATTCAGCTCAAACT+AGG | - | chr5_2:12527900-12527919 | Msa0757580:CDS | 40.0% | |
| GGGTACAACTGCAACAAAAG+GGG | - | chr5_2:12524553-12524572 | Msa0757580:CDS | 45.0% | |
| GGGGTTGCTGAGAAAAGAAA+AGG | - | chr5_2:12524572-12524591 | Msa0757580:CDS | 45.0% | |
| CTGTATCCAATTACACTCCC+TGG | + | chr5_2:12524608-12524627 | None:intergenic | 45.0% | |
| GTAATTGGATACAGTGCTGC+CGG | - | chr5_2:12524614-12524633 | Msa0757580:CDS | 45.0% | |
| ! | TGAGACTGTGTCACTCAACT+TGG | + | chr5_2:12524729-12524748 | None:intergenic | 45.0% |
| GACACAGTCTCAAGTGAGAT+AGG | - | chr5_2:12524737-12524756 | Msa0757580:CDS | 45.0% | |
| TGCACATGGGAATCCCAATT+TGG | + | chr5_2:12525043-12525062 | None:intergenic | 45.0% | |
| ! | GTAGCGCTGAAGAAGATACA+TGG | - | chr5_2:12525667-12525686 | Msa0757580:intron | 45.0% |
| AGAATTGCGTCGAGCAAAGT+TGG | - | chr5_2:12526063-12526082 | Msa0757580:intron | 45.0% | |
| CAGAAAACCTAATACTCCGG+TGG | - | chr5_2:12526089-12526108 | Msa0757580:intron | 45.0% | |
| AAAACCTAATACTCCGGTGG+TGG | - | chr5_2:12526092-12526111 | Msa0757580:intron | 45.0% | |
| AATATACGTAAAGCCCCCGT+TGG | - | chr5_2:12526198-12526217 | Msa0757580:intron | 45.0% | |
| TGGCTGAACATTGAGTTAGG+CGG | - | chr5_2:12526495-12526514 | Msa0757580:intron | 45.0% | |
| ! | ACTGTGGACCTGTGATTTTG+TGG | - | chr5_2:12526522-12526541 | Msa0757580:intron | 45.0% |
| ! | GCAAGATGGTTCTACCTATG+TGG | - | chr5_2:12527012-12527031 | Msa0757580:intron | 45.0% |
| AGATTTCAGGGCTGTTCTTC+AGG | - | chr5_2:12527057-12527076 | Msa0757580:intron | 45.0% | |
| GATTTCAGGGCTGTTCTTCA+GGG | - | chr5_2:12527058-12527077 | Msa0757580:intron | 45.0% | |
| ATTTCAGGGCTGTTCTTCAG+GGG | - | chr5_2:12527059-12527078 | Msa0757580:intron | 45.0% | |
| CGTGTATTCTCTGCTCACAA+TGG | - | chr5_2:12527185-12527204 | Msa0757580:intron | 45.0% | |
| TAGAAACAAATCCCCGGAGT+TGG | - | chr5_2:12527208-12527227 | Msa0757580:intron | 45.0% | |
| AGAAACAAATCCCCGGAGTT+GGG | - | chr5_2:12527209-12527228 | Msa0757580:intron | 45.0% | |
| GATTGTAGGATGTCCTGATG+TGG | - | chr5_2:12527269-12527288 | Msa0757580:intron | 45.0% | |
| CCATCAAATTCCTCCACATC+AGG | + | chr5_2:12527285-12527304 | None:intergenic | 45.0% | |
| CCTGATGTGGAGGAATTTGA+TGG | - | chr5_2:12527282-12527301 | Msa0757580:intron | 45.0% | |
| !! | CATTTGGTGTTTATTGGGGC+TGG | - | chr5_2:12527309-12527328 | Msa0757580:intron | 45.0% |
| GAGGTTCAGCTGCAATTGAA+AGG | - | chr5_2:12527720-12527739 | Msa0757580:intron | 45.0% | |
| TTCAGCTGCAATTGAAAGGG+TGG | - | chr5_2:12527724-12527743 | Msa0757580:intron | 45.0% | |
| TGAAGTAATCCGGCAATAGC+TGG | + | chr5_2:12527758-12527777 | None:intergenic | 45.0% | |
| ACATCTAGATCGCTTTGTCC+CGG | + | chr5_2:12527795-12527814 | None:intergenic | 45.0% | |
| ACAGGTACAGAGATGGACAT+TGG | + | chr5_2:12527959-12527978 | None:intergenic | 45.0% | |
| AGAAAAGGAAGAAGGGGTCC+AGG | - | chr5_2:12524587-12524606 | Msa0757580:CDS | 50.0% | |
| GAAAAGGAAGAAGGGGTCCA+GGG | - | chr5_2:12524588-12524607 | Msa0757580:CDS | 50.0% | |
| ! | GAGGAAAGCACAAACGCAAC+CGG | + | chr5_2:12524636-12524655 | None:intergenic | 50.0% |
| !! | GAGCGGCTTTTTCTCAGCTT+TGG | - | chr5_2:12524675-12524694 | Msa0757580:CDS | 50.0% |
| GAAGTTCGGGGTTTGATCCT+TGG | + | chr5_2:12524830-12524849 | None:intergenic | 50.0% | |
| TCTTCAGCGCTACCCAAAGT+TGG | + | chr5_2:12525660-12525679 | None:intergenic | 50.0% | |
| CTCCACCATGACACAATGTG+CGG | + | chr5_2:12525966-12525985 | None:intergenic | 50.0% | |
| TTGCGGCGGAAAAGCTAGAT+AGG | - | chr5_2:12526003-12526022 | Msa0757580:intron | 50.0% | |
| ACGCTTCATCTGAGCACCAA+CGG | + | chr5_2:12526217-12526236 | None:intergenic | 50.0% | |
| TGAGTTAGGCGGAATCACTG+TGG | - | chr5_2:12526506-12526525 | Msa0757580:intron | 50.0% | |
| TCTCGATATGTTTGGCTGGG+CGG | + | chr5_2:12526600-12526619 | None:intergenic | 50.0% | |
| !!! | TGCCCGTCGAATGCTACTTT+TGG | + | chr5_2:12526850-12526869 | None:intergenic | 50.0% |
| AAGTAGCATTCGACGGGCAA+CGG | - | chr5_2:12526851-12526870 | Msa0757580:intron | 50.0% | |
| ATTGTGGTCCTACCCAACTC+CGG | + | chr5_2:12527224-12527243 | None:intergenic | 50.0% | |
| TGTAGGATGTCCTGATGTGG+AGG | - | chr5_2:12527272-12527291 | Msa0757580:intron | 50.0% | |
| GATGCATTGTGGAACACCGA+CGG | - | chr5_2:12527652-12527671 | Msa0757580:intron | 50.0% | |
| ATGCATTGTGGAACACCGAC+GGG | - | chr5_2:12527653-12527672 | Msa0757580:intron | 50.0% | |
| ACTGCATTCTCCTTACCCGT+CGG | + | chr5_2:12527671-12527690 | None:intergenic | 50.0% | |
| ! | GTTAAGGCACCAGCTATTGC+CGG | - | chr5_2:12527746-12527765 | Msa0757580:CDS | 50.0% |
| AGGGATTCAAGCTTTGCTGC+AGG | - | chr5_2:12527920-12527939 | Msa0757580:intron | 50.0% | |
| GGGATTCAAGCTTTGCTGCA+GGG | - | chr5_2:12527921-12527940 | Msa0757580:intron | 50.0% | |
| GGATTCAAGCTTTGCTGCAG+GGG | - | chr5_2:12527922-12527941 | Msa0757580:intron | 50.0% | |
| ! | AGGGGTCCAGGGAGTGTAAT+TGG | - | chr5_2:12524599-12524618 | Msa0757580:CDS | 55.0% |
| TCGAGCCGCACATTGTGTCA+TGG | - | chr5_2:12525958-12525977 | Msa0757580:intron | 55.0% | |
| AGCCGCACATTGTGTCATGG+TGG | - | chr5_2:12525961-12525980 | Msa0757580:intron | 55.0% | |
| ! | GAAGCATTTGCAGCCACCAC+CGG | + | chr5_2:12526108-12526127 | None:intergenic | 55.0% |
| CTTCATCTGAGCACCAACGG+GGG | + | chr5_2:12526214-12526233 | None:intergenic | 55.0% | |
| GCTTCATCTGAGCACCAACG+GGG | + | chr5_2:12526215-12526234 | None:intergenic | 55.0% | |
| CGCTTCATCTGAGCACCAAC+GGG | + | chr5_2:12526216-12526235 | None:intergenic | 55.0% | |
| CGGGCAACGGTTCTCTTACA+AGG | - | chr5_2:12526864-12526883 | Msa0757580:intron | 55.0% | |
| ACAAATCCCCGGAGTTGGGT+AGG | - | chr5_2:12527213-12527232 | Msa0757580:intron | 55.0% | |
| TTGTGGTCCTACCCAACTCC+GGG | + | chr5_2:12527223-12527242 | None:intergenic | 55.0% | |
| TTGTGGAACACCGACGGGTA+AGG | - | chr5_2:12527658-12527677 | Msa0757580:intron | 55.0% | |
| CAGCATTGCCCGAGTTATGC+CGG | - | chr5_2:12527693-12527712 | Msa0757580:intron | 55.0% | |
| ACCTCCACTCCGGCATAACT+CGG | + | chr5_2:12527705-12527724 | None:intergenic | 55.0% | |
| TTGCAGCTGAACCTCCACTC+CGG | + | chr5_2:12527715-12527734 | None:intergenic | 55.0% | |
| ! | GCAGCCACCACCGGAGTATT+AGG | + | chr5_2:12526099-12526118 | None:intergenic | 60.0% |
| TGTGGTCCTACCCAACTCCG+GGG | + | chr5_2:12527222-12527241 | None:intergenic | 60.0% | |
| TTGCCCGAGTTATGCCGGAG+TGG | - | chr5_2:12527698-12527717 | Msa0757580:intron | 60.0% | |
| CCTCCACTCCGGCATAACTC+GGG | + | chr5_2:12527704-12527723 | None:intergenic | 60.0% | |
| CCCGAGTTATGCCGGAGTGG+AGG | - | chr5_2:12527701-12527720 | Msa0757580:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 12524506 | 12527982 | 12524506 | ID=Msa0757580;Name=Msa0757580 |
| chr5_2 | mRNA | 12524506 | 12527982 | 12524506 | ID=Msa0757580-mRNA-1;Parent=Msa0757580;Name=Msa0757580-mRNA-1;_AED=0.19;_eAED=0.22;_QI=0|0.2|0|1|0.2|0.16|6|0|310 |
| chr5_2 | exon | 12527947 | 12527982 | 12527947 | ID=Msa0757580-mRNA-1:exon:5624;Parent=Msa0757580-mRNA-1 |
| chr5_2 | exon | 12527739 | 12527934 | 12527739 | ID=Msa0757580-mRNA-1:exon:5623;Parent=Msa0757580-mRNA-1 |
| chr5_2 | exon | 12526231 | 12526463 | 12526231 | ID=Msa0757580-mRNA-1:exon:5622;Parent=Msa0757580-mRNA-1 |
| chr5_2 | exon | 12525603 | 12525677 | 12525603 | ID=Msa0757580-mRNA-1:exon:5621;Parent=Msa0757580-mRNA-1 |
| chr5_2 | exon | 12525455 | 12525509 | 12525455 | ID=Msa0757580-mRNA-1:exon:5620;Parent=Msa0757580-mRNA-1 |
| chr5_2 | exon | 12524506 | 12524840 | 12524506 | ID=Msa0757580-mRNA-1:exon:5619;Parent=Msa0757580-mRNA-1 |
| chr5_2 | CDS | 12527947 | 12527982 | 12527947 | ID=Msa0757580-mRNA-1:cds;Parent=Msa0757580-mRNA-1 |
| chr5_2 | CDS | 12527739 | 12527934 | 12527739 | ID=Msa0757580-mRNA-1:cds;Parent=Msa0757580-mRNA-1 |
| chr5_2 | CDS | 12526231 | 12526463 | 12526231 | ID=Msa0757580-mRNA-1:cds;Parent=Msa0757580-mRNA-1 |
| chr5_2 | CDS | 12525603 | 12525677 | 12525603 | ID=Msa0757580-mRNA-1:cds;Parent=Msa0757580-mRNA-1 |
| chr5_2 | CDS | 12525455 | 12525509 | 12525455 | ID=Msa0757580-mRNA-1:cds;Parent=Msa0757580-mRNA-1 |
| chr5_2 | CDS | 12524506 | 12524840 | 12524506 | ID=Msa0757580-mRNA-1:cds;Parent=Msa0757580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
