AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0864600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0864600 MtrunA17_Chr2g0284461 92.982 114 8 0 199 312 607 720 4.34e-63 212
Msa0864600 MtrunA17_Chr3g0139641 80.000 115 16 2 191 298 18 132 5.83e-54 173
Msa0864600 MtrunA17_Chr2g0314681 72.449 98 17 2 14 102 132 228 6.39e-35 129
Msa0864600 MtrunA17_Chr7g0235141 92.157 51 4 0 202 252 5 55 5.29e-25 95.1
Msa0864600 MtrunA17_Chr5g0397801 55.000 100 22 3 109 185 24 123 5.03e-23 95.9
Msa0864600 MtrunA17_Chr8g0386391 88.372 43 5 0 94 136 24 66 2.24e-19 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0864600 AT1G29340.1 66.372 113 33 2 199 311 619 726 1.39e-36 139
Msa0864600 AT1G78620.1 62.376 101 24 2 1 92 133 228 7.06e-29 113
Msa0864600 AT1G78620.2 61.905 105 27 3 1 92 133 237 2.24e-28 112
Msa0864600 AT4G20330.1 43.357 143 58 3 105 226 37 177 3.10e-21 92.0
Msa0864600 AT4G21010.1 50.649 77 19 1 125 182 51 127 5.00e-14 71.2

Find 72 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGCCACCATCGGAGTATT+AGG 0.260708 5_4:+65032068 None:intergenic
CTTCAAACCTTACTATTTAC+CGG 0.297826 5_4:-65030391 Msa0864600:CDS
AGGGGTCCAGGGAGTGTAAT+TGG 0.309595 5_4:-65033568 Msa0864600:CDS
TGCCCGTCGAATGCTACTTT+TGG 0.331505 5_4:+65031317 None:intergenic
TCTCTACATTATGGTGGATT+AGG 0.362130 5_4:-65030304 Msa0864600:CDS
TACTTTAGAGTTGATTGGTT+TGG 0.363493 5_4:-65033647 Msa0864600:intron
CGCTTCATCTGAGCACCAAC+GGG 0.368774 5_4:+65031951 None:intergenic
CTTTGTCCCGGTAAATAGTA+AGG 0.389229 5_4:+65030384 None:intergenic
GAAAATGCATCTCTACATTA+TGG 0.412312 5_4:-65030313 Msa0864600:CDS
TGCAATTGAAAGGGTGGTTA+AGG 0.415531 5_4:-65030434 Msa0864600:CDS
GTATTATACCACTATATTAC+AGG 0.417054 5_4:+65030190 None:intergenic
CTAGCAATTCAGCTCAAACT+AGG 0.421052 5_4:-65030264 Msa0864600:CDS
AGAAAAGGAAGAAGGGGTCC+AGG 0.424572 5_4:-65033580 Msa0864600:CDS
GCTGCAAATGCTTCATCAAA+TGG 0.435679 5_4:-65032050 Msa0864600:CDS
GTTAAGGCACCAGCTATTGC+CGG 0.446225 5_4:-65030418 Msa0864600:CDS
TAGGGTACAGCTGCAACAAA+AGG 0.454422 5_4:-65033616 Msa0864600:CDS
TAGTAAGGTTTGAAGTAATC+CGG 0.457922 5_4:+65030399 None:intergenic
TTTCTCAGCTTTGGAGACTT+GGG 0.460386 5_4:-65033483 Msa0864600:CDS
ACCTCCACTCCGGCATAACT+CGG 0.476880 5_4:+65030462 None:intergenic
CTGAGAAAAGAAAAGGAAGA+AGG 0.478719 5_4:-65033588 Msa0864600:CDS
AGGGATTCAAGCTTTGCTGC+AGG 0.485529 5_4:-65030244 Msa0864600:CDS
AGAATTGCGTCGAGCAAAGT+TGG 0.491272 5_4:-65032101 Msa0864600:CDS
TGAAGTAATCCGGCAATAGC+TGG 0.491668 5_4:+65030409 None:intergenic
AAGTAGCATTCGACGGGCAA+CGG 0.492837 5_4:-65031313 Msa0864600:CDS
CAGCATTGCCCGAGTTATGC+CGG 0.494015 5_4:-65030471 Msa0864600:CDS
GAGGAAAGCACAAACGCAAC+CGG 0.496460 5_4:+65033534 None:intergenic
TTCAAACCTTACTATTTACC+GGG 0.497622 5_4:-65030390 Msa0864600:CDS
GGGGTTGCTGAGAAAAGAAA+AGG 0.497980 5_4:-65033595 Msa0864600:CDS
TCTCTGTACCTGTAATATAG+TGG 0.503843 5_4:-65030198 None:intergenic
AGGGTACAGCTGCAACAAAA+GGG 0.511419 5_4:-65033615 Msa0864600:CDS
CGGGCAACGGTTCTCTTACA+AGG 0.513416 5_4:-65031300 Msa0864600:intron
GGATTCAAGCTTTGCTGCAG+GGG 0.516848 5_4:-65030242 Msa0864600:CDS
ACATCTAGATCGCTTTGTCC+CGG 0.518597 5_4:+65030372 None:intergenic
GGGATTCAAGCTTTGCTGCA+GGG 0.523093 5_4:-65030243 Msa0864600:CDS
TTGTGGAACACCGACGGGTA+AGG 0.523691 5_4:-65030506 Msa0864600:CDS
GAGGTTCAGCTGCAATTGAA+AGG 0.524042 5_4:-65030444 Msa0864600:CDS
TAGCAATTCAGCTCAAACTA+GGG 0.535704 5_4:-65030263 Msa0864600:CDS
CTGTATCCAATTACACTCCC+TGG 0.541458 5_4:+65033562 None:intergenic
AACCAAAAGTAGCATTCGAC+GGG 0.544882 5_4:-65031319 Msa0864600:CDS
TGAGACTGTGTCACTCAACT+TGG 0.545176 5_4:+65033441 None:intergenic
ATGCATTGTGGAACACCGAC+GGG 0.546446 5_4:-65030511 Msa0864600:CDS
CATTATGGTGGATTAGGTGT+AGG 0.550138 5_4:-65030298 Msa0864600:CDS
GAAGCATTTGCAGCCACCAT+CGG 0.555643 5_4:+65032059 None:intergenic
GAAAAGGAAGAAGGGGTCCA+GGG 0.558281 5_4:-65033579 Msa0864600:CDS
TGTTATTGATCTATTGCTTG+AGG 0.558507 5_4:-65031928 Msa0864600:intron
GCAAGATGGTTCTACCTATG+TGG 0.563290 5_4:-65031152 Msa0864600:intron
TGAGAAAAGAAAAGGAAGAA+GGG 0.576058 5_4:-65033587 Msa0864600:CDS
CCTCCACTCCGGCATAACTC+GGG 0.578231 5_4:+65030463 None:intergenic
TTCAGCTGCAATTGAAAGGG+TGG 0.584405 5_4:-65030440 Msa0864600:CDS
CCCGAGTTATGCCGGAGTGG+AGG 0.588750 5_4:-65030463 Msa0864600:CDS
AGGTTCAGCTGCAATTGAAA+GGG 0.592747 5_4:-65030443 Msa0864600:CDS
ACGCTTCATCTGAGCACCAA+CGG 0.595575 5_4:+65031950 None:intergenic
GATGCATTGTGGAACACCGA+CGG 0.596797 5_4:-65030512 Msa0864600:CDS
GTAATTGGATACAGTGCTGC+CGG 0.603510 5_4:-65033553 Msa0864600:CDS
AAACCAAAAGTAGCATTCGA+CGG 0.604360 5_4:-65031320 Msa0864600:CDS
ATTAGGTGTAGGCTATGCAT+TGG 0.609651 5_4:-65030287 Msa0864600:CDS
CTATATTACAGGTACAGAGA+TGG 0.627725 5_4:+65030201 None:intergenic
GGGTACAGCTGCAACAAAAG+GGG 0.630163 5_4:-65033614 Msa0864600:CDS
ACTGCATTCTCCTTACCCGT+CGG 0.632613 5_4:+65030496 None:intergenic
GAGAAAAGAAAAGGAAGAAG+GGG 0.634746 5_4:-65033586 Msa0864600:CDS
AATGCATCTCTACATTATGG+TGG 0.635137 5_4:-65030310 Msa0864600:CDS
ACAGGTACAGAGATGGACAT+TGG 0.635671 5_4:+65030208 None:intergenic
CAGAAAACCTAATACTCCGA+TGG 0.641410 5_4:-65032075 Msa0864600:CDS
AAGTGGTAACAAAACCACAT+AGG 0.643784 5_4:+65031138 None:intergenic
AAAACCTAATACTCCGATGG+TGG 0.649243 5_4:-65032072 Msa0864600:CDS
AAACACTCTAGCAAGTGAAG+CGG 0.657985 5_4:+65030345 None:intergenic
GCTTCATCTGAGCACCAACG+GGG 0.666699 5_4:+65031952 None:intergenic
AATTCTCAAATGATACTGAG+AGG 0.667400 5_4:-65032004 Msa0864600:CDS
TTGCAGCTGAACCTCCACTC+CGG 0.668193 5_4:+65030452 None:intergenic
TTGATAGGAATGATGCATTG+TGG 0.674576 5_4:-65030523 Msa0864600:intron
TTGCCCGAGTTATGCCGGAG+TGG 0.686988 5_4:-65030466 Msa0864600:CDS
CTTCATCTGAGCACCAACGG+GGG 0.696908 5_4:+65031953 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTAATCCATTATATT+GGG + chr5_4:65031473-65031492 None:intergenic 10.0%
!! AAAATATTAATCCATTATAT+TGG + chr5_4:65031474-65031493 None:intergenic 10.0%
!!! ATTAATATTTTACTGAATAA+GGG - chr5_4:65031483-65031502 Msa0864600:intron 10.0%
!!! ATGAAAATTTTCATTGTTTT+TGG - chr5_4:65030584-65030603 Msa0864600:intron 15.0%
!!! TTGAATTTTTAGTTAATTAG+TGG - chr5_4:65031438-65031457 Msa0864600:intron 15.0%
!!! GATTAATATTTTACTGAATA+AGG - chr5_4:65031482-65031501 Msa0864600:intron 15.0%
!! ATGAAAAAAAAATGAAACAT+TGG + chr5_4:65031575-65031594 None:intergenic 15.0%
!!! TTTCTTCTACATTATTTTAA+TGG - chr5_4:65033101-65033120 Msa0864600:intron 15.0%
!! TACAATCTTTAAATTGAAAG+CGG + chr5_4:65030214-65030233 None:intergenic 20.0%
!!! TATGATAATGAACTTAATTC+TGG - chr5_4:65030359-65030378 Msa0864600:CDS 20.0%
!!! TTTTATACTTTAGAGTTGAT+TGG - chr5_4:65030623-65030642 Msa0864600:intron 20.0%
!!! TAGTTAACTCTTTCTTTTTT+TGG - chr5_4:65030894-65030913 Msa0864600:intron 20.0%
!!! AAATTTTTGATATCCATCAA+AGG + chr5_4:65030973-65030992 None:intergenic 20.0%
!! TGTTTCATTGTGTTAAAAAT+TGG - chr5_4:65031102-65031121 Msa0864600:intron 20.0%
!!! GACATTAAGTTTTGAATTTT+AGG - chr5_4:65031173-65031192 Msa0864600:CDS 20.0%
!! ATTAAAGTATGCTAAACAAT+TGG - chr5_4:65031239-65031258 Msa0864600:intron 20.0%
!! TTTACAGAGAAATAAACAAA+TGG + chr5_4:65031605-65031624 None:intergenic 20.0%
!!! TTTTAATTATTGTTAGTGAC+TGG - chr5_4:65032412-65032431 Msa0864600:intron 20.0%
!!! TATTAGTTTCAATTTGCAAT+TGG + chr5_4:65032582-65032601 None:intergenic 20.0%
!! CAAATTGAAACTAATATGTT+TGG - chr5_4:65032586-65032605 Msa0864600:intron 20.0%
!! GAACAAAGAAAAAAAATTGA+AGG + chr5_4:65033658-65033677 None:intergenic 20.0%
!!! TCAATTTTTTTTCTTTGTTC+AGG - chr5_4:65033658-65033677 Msa0864600:CDS 20.0%
!! AAAGCATCAATTAAATGCAA+TGG - chr5_4:65030302-65030321 Msa0864600:CDS 25.0%
! AGTTCATTATCATATATGCT+GGG + chr5_4:65030353-65030372 None:intergenic 25.0%
! AAGTTCATTATCATATATGC+TGG + chr5_4:65030354-65030373 None:intergenic 25.0%
! TGTCTATGCAATTATGATAA+TGG - chr5_4:65030559-65030578 Msa0864600:intron 25.0%
!!! TTTTCATTGTTTTTGGTTCT+AGG - chr5_4:65030591-65030610 Msa0864600:intron 25.0%
!!! TTTCATTGTTTTTGGTTCTA+GGG - chr5_4:65030592-65030611 Msa0864600:intron 25.0%
!! TAGATATATGTTAGTTTCCA+AGG - chr5_4:65030918-65030937 Msa0864600:intron 25.0%
!!! AGTTTTAAGTATGAAGTTCA+GGG + chr5_4:65030950-65030969 None:intergenic 25.0%
! AAAATTGGTTGACATTCATT+TGG - chr5_4:65031117-65031136 Msa0864600:intron 25.0%
!! GTTTAGCATACTTTAATTTC+AGG + chr5_4:65031236-65031255 None:intergenic 25.0%
! GTTTCAAAAATTCCAAATCA+TGG + chr5_4:65031348-65031367 None:intergenic 25.0%
! GTTCAAATGCACAATTTATT+TGG - chr5_4:65031386-65031405 Msa0864600:intron 25.0%
! TTCCTTTATGCATATTTAGA+AGG - chr5_4:65031688-65031707 Msa0864600:intron 25.0%
! ATCCTTCTAAATATGCATAA+AGG + chr5_4:65031693-65031712 None:intergenic 25.0%
! TTTATGCATATTTAGAAGGA+TGG - chr5_4:65031692-65031711 Msa0864600:intron 25.0%
! CATTAAGAAAGGATATAAAC+TGG - chr5_4:65031818-65031837 Msa0864600:intron 25.0%
!!! AGAGAAAGTACAAACTTTTT+GGG + chr5_4:65031923-65031942 None:intergenic 25.0%
! AATGGAAGAAATTCAAAAAC+TGG - chr5_4:65032243-65032262 Msa0864600:intron 25.0%
! ATAGCATAATTTATTTGCTC+TGG + chr5_4:65032891-65032910 None:intergenic 25.0%
! AATTATGCTATGTTGATATG+AGG - chr5_4:65032900-65032919 Msa0864600:intron 25.0%
!! ATGAAGAAGTTATTTGCTAA+AGG + chr5_4:65033048-65033067 None:intergenic 25.0%
!!! ACATTATTTTAATGGCAAGA+TGG - chr5_4:65033109-65033128 Msa0864600:intron 25.0%
!! TACATAACATACATTAGTCT+CGG + chr5_4:65033359-65033378 None:intergenic 25.0%
! TGTATGTTATGTATGATTGT+AGG - chr5_4:65033366-65033385 Msa0864600:intron 25.0%
!!! GCATTTGTTATAACTTCATA+AGG + chr5_4:65033453-65033472 None:intergenic 25.0%
!!! TTCAGAAGAGTATTTTGAAA+AGG + chr5_4:65033506-65033525 None:intergenic 25.0%
! AAAGTTTATCACTGCAAATT+AGG + chr5_4:65033602-65033621 None:intergenic 25.0%
!!! ATCTTTTTGTTTGCTTTGTT+TGG - chr5_4:65033728-65033747 Msa0864600:intron 25.0%
!! TTTTGTGGCCATTTTGTTTA+AGG - chr5_4:65030270-65030289 Msa0864600:CDS 30.0%
!! TTTGTGGCCATTTTGTTTAA+GGG - chr5_4:65030271-65030290 Msa0864600:CDS 30.0%
TCATATGCCCTTAAACAAAA+TGG + chr5_4:65030281-65030300 None:intergenic 30.0%
AATTAAATGCAATGGCAAAG+AGG - chr5_4:65030310-65030329 Msa0864600:CDS 30.0%
ATATATGCTGGGATCAAAAT+TGG + chr5_4:65030342-65030361 None:intergenic 30.0%
AATGACAGAATCATATCATC+AGG - chr5_4:65030466-65030485 Msa0864600:CDS 30.0%
! TCACAATTTGGATTTGAGTT+TGG - chr5_4:65030501-65030520 Msa0864600:CDS 30.0%
! CACAATTTGGATTTGAGTTT+GGG - chr5_4:65030502-65030521 Msa0864600:CDS 30.0%
!! TACTTTAGAGTTGATTGGTT+TGG - chr5_4:65030628-65030647 Msa0864600:intron 30.0%
!! ATTGGTTTGGTGTTTGTTTA+GGG - chr5_4:65030641-65030660 Msa0864600:intron 30.0%
TGAGAAAAGAAAAGGAAGAA+GGG - chr5_4:65030688-65030707 Msa0864600:intron 30.0%
!!! GAGTTTTAAGTATGAAGTTC+AGG + chr5_4:65030951-65030970 None:intergenic 30.0%
CATACTTAAAACTCCTTTGA+TGG - chr5_4:65030957-65030976 Msa0864600:intron 30.0%
! TGTCCTGTTTGAAATTAAAG+TGG - chr5_4:65031014-65031033 Msa0864600:intron 30.0%
! GTTCCACTTTAATTTCAAAC+AGG + chr5_4:65031020-65031039 None:intergenic 30.0%
GAAATTAAAGTGGAACAAGA+AGG - chr5_4:65031024-65031043 Msa0864600:intron 30.0%
CACAATGAAACAATCATCAA+TGG + chr5_4:65031094-65031113 None:intergenic 30.0%
ATTTGGTTGTGATTCCAAAT+TGG - chr5_4:65031134-65031153 Msa0864600:intron 30.0%
TTTGGTTGTGATTCCAAATT+GGG - chr5_4:65031135-65031154 Msa0864600:intron 30.0%
CCATTGAACATGTTTATCAA+AGG + chr5_4:65031282-65031301 None:intergenic 30.0%
CCTTTGATAAACATGTTCAA+TGG - chr5_4:65031279-65031298 Msa0864600:intron 30.0%
!!! ATAAGGGTTTTGAAGTTTGT+AGG - chr5_4:65031499-65031518 Msa0864600:intron 30.0%
! TTTGAAGTTTGTAGGATTGA+TGG - chr5_4:65031507-65031526 Msa0864600:intron 30.0%
! GAACTATGATATAAAAGTGC+AGG - chr5_4:65031543-65031562 Msa0864600:intron 30.0%
GCAACAATTTCTGATTCAAA+TGG + chr5_4:65031749-65031768 None:intergenic 30.0%
ATACATGGTGATATCATGTA+TGG - chr5_4:65031793-65031812 Msa0864600:intron 30.0%
CATGTATGGAACATTAAGAA+AGG - chr5_4:65031807-65031826 Msa0864600:intron 30.0%
!! CAGAGAAAGTACAAACTTTT+TGG + chr5_4:65031924-65031943 None:intergenic 30.0%
AAAGTTTGTACTTTCTCTGA+AGG - chr5_4:65031925-65031944 Msa0864600:intron 30.0%
TCTGAAGGACTAATAGATTT+AGG - chr5_4:65031940-65031959 Msa0864600:CDS 30.0%
! GGTTTAATGAGTTATTTCAG+TGG - chr5_4:65031961-65031980 Msa0864600:CDS 30.0%
! AAGCACATTTGAAATGTTTG+CGG - chr5_4:65032097-65032116 Msa0864600:CDS 30.0%
AATTCTCAAATGATACTGAG+AGG - chr5_4:65032271-65032290 Msa0864600:intron 30.0%
TGTTATTGATCTATTGCTTG+AGG - chr5_4:65032347-65032366 Msa0864600:intron 30.0%
! TCTATTGCTTGAGGTAATTT+TGG - chr5_4:65032356-65032375 Msa0864600:intron 30.0%
TAATTATTGTTAGTGACTGG+CGG - chr5_4:65032415-65032434 Msa0864600:intron 30.0%
! CCTCAAAATTCTTTTAAGCT+AGG + chr5_4:65032530-65032549 None:intergenic 30.0%
! CCTAGCTTAAAAGAATTTTG+AGG - chr5_4:65032527-65032546 Msa0864600:intron 30.0%
! TGGTGACTTTTAAGCTATAA+TGG + chr5_4:65032562-65032581 None:intergenic 30.0%
AATGAAGTTCTCGATATGTT+TGG + chr5_4:65032719-65032738 None:intergenic 30.0%
GTAAGCTATCTTAAGTAACA+TGG + chr5_4:65032780-65032799 None:intergenic 30.0%
! TCGTCAAAACCATATTGATT+TGG - chr5_4:65032828-65032847 Msa0864600:intron 30.0%
!!! ACCATATTGATTTGGTGTTT+TGG - chr5_4:65032836-65032855 Msa0864600:intron 30.0%
ACCAAAACACCAAATCAATA+TGG + chr5_4:65032840-65032859 None:intergenic 30.0%
!! TTTGCTTTGTTTGGATTGAT+AGG - chr5_4:65033737-65033756 Msa0864600:intron 30.0%
! TAGTAAGGTTTGAAGTAATC+CGG + chr5_4:65033879-65033898 None:intergenic 30.0%
CTTCAAACCTTACTATTTAC+CGG - chr5_4:65033884-65033903 Msa0864600:intron 30.0%
TTCAAACCTTACTATTTACC+GGG - chr5_4:65033885-65033904 Msa0864600:intron 30.0%
GAAAATGCATCTCTACATTA+TGG - chr5_4:65033962-65033981 Msa0864600:intron 30.0%
!!! AGCATGCACTCTATTGATTT+TGG + chr5_4:65030238-65030257 None:intergenic 35.0%
AAATCAATAGAGTGCATGCT+AGG - chr5_4:65030238-65030257 Msa0864600:CDS 35.0%
AATCAATAGAGTGCATGCTA+GGG - chr5_4:65030239-65030258 Msa0864600:CDS 35.0%
!!! GCTAGGGTTTTAAGTTTTTG+TGG - chr5_4:65030255-65030274 Msa0864600:CDS 35.0%
!! TTCTGGCTAGCACTTTTAAT+TGG - chr5_4:65030376-65030395 Msa0864600:CDS 35.0%
TAATGCTGCAGATCACAATT+TGG - chr5_4:65030489-65030508 Msa0864600:CDS 35.0%
! TGGGAAATTCAAGTTCTACA+AGG - chr5_4:65030521-65030540 Msa0864600:intron 35.0%
!! GATTGGTTTGGTGTTTGTTT+AGG - chr5_4:65030640-65030659 Msa0864600:intron 35.0%
CTGAGAAAAGAAAAGGAAGA+AGG - chr5_4:65030687-65030706 Msa0864600:intron 35.0%
GAGAAAAGAAAAGGAAGAAG+GGG - chr5_4:65030689-65030708 Msa0864600:intron 35.0%
! TGTGCTTTCCTCACAATTTT+TGG - chr5_4:65030752-65030771 Msa0864600:intron 35.0%
!!! TTCCTCACAATTTTTGGAGT+TGG - chr5_4:65030758-65030777 Msa0864600:intron 35.0%
!! ATTGTTTGTTAGCCTTTGCT+TGG - chr5_4:65031062-65031081 Msa0864600:intron 35.0%
AACTTAATGTCGTTGCACAT+GGG + chr5_4:65031164-65031183 None:intergenic 35.0%
AAACTTAATGTCGTTGCACA+TGG + chr5_4:65031165-65031184 None:intergenic 35.0%
ATGTTCAATGGCATGTTACA+TGG - chr5_4:65031291-65031310 Msa0864600:intron 35.0%
!! CTTGATGATGAACCATGATT+TGG - chr5_4:65031333-65031352 Msa0864600:CDS 35.0%
GAACAAAATATGACTGTGAG+TGG + chr5_4:65031370-65031389 None:intergenic 35.0%
! GACTAAAGTGCCCAATATAA+TGG - chr5_4:65031460-65031479 Msa0864600:intron 35.0%
TCAGAAATTGTTGCCAACTT+TGG - chr5_4:65031755-65031774 Msa0864600:intron 35.0%
CAGAAATTGTTGCCAACTTT+GGG - chr5_4:65031756-65031775 Msa0864600:intron 35.0%
ACAGCAGCACAATAATCTTA+AGG - chr5_4:65031845-65031864 Msa0864600:intron 35.0%
AATCTTAAGGAGACAGAAAC+AGG - chr5_4:65031858-65031877 Msa0864600:intron 35.0%
!! TGATTTTGATGCATGAGATG+AGG - chr5_4:65032449-65032468 Msa0864600:intron 35.0%
!! GATTTTGATGCATGAGATGA+GGG - chr5_4:65032450-65032469 Msa0864600:intron 35.0%
ACCAATGAAAGTCCACAATT+AGG - chr5_4:65032798-65032817 Msa0864600:intron 35.0%
TCCTAATTGTGGACTTTCAT+TGG + chr5_4:65032802-65032821 None:intergenic 35.0%
GACGAATCAATTCCTAATTG+TGG + chr5_4:65032813-65032832 None:intergenic 35.0%
!!! TTTTGGTTTGCTGATAGACA+CGG - chr5_4:65032853-65032872 Msa0864600:intron 35.0%
!! AAGATGTTTTTGAGAGTCTG+AGG - chr5_4:65032929-65032948 Msa0864600:intron 35.0%
AAACCAAAAGTAGCATTCGA+CGG - chr5_4:65032955-65032974 Msa0864600:intron 35.0%
AAGTGGTAACAAAACCACAT+AGG + chr5_4:65033140-65033159 None:intergenic 35.0%
!!! TGTGGTTTTGTTACCACTTT+TGG - chr5_4:65033141-65033160 Msa0864600:intron 35.0%
!! GTTTTGTTACCACTTTTGGA+AGG - chr5_4:65033145-65033164 Msa0864600:intron 35.0%
!! ACTTTTGGAAGGAGATTTCA+GGG - chr5_4:65033156-65033175 Msa0864600:intron 35.0%
ATTGAGATTTGTGTCGAAAG+TGG - chr5_4:65033208-65033227 Msa0864600:intron 35.0%
!! GGACTCATTTGGTGTTTATT+GGG - chr5_4:65033415-65033434 Msa0864600:intron 35.0%
!! GACTCATTTGGTGTTTATTG+GGG - chr5_4:65033416-65033435 Msa0864600:intron 35.0%
TGTTCCATTAGTGCAGTATT+AGG - chr5_4:65033544-65033563 Msa0864600:CDS 35.0%
AAGTCCTAATACTGCACTAA+TGG + chr5_4:65033551-65033570 None:intergenic 35.0%
TTTGTTCAGGACTATTGAGT+CGG - chr5_4:65033671-65033690 Msa0864600:intron 35.0%
TTGATAGGAATGATGCATTG+TGG - chr5_4:65033752-65033771 Msa0864600:intron 35.0%
AATGCATCTCTACATTATGG+TGG - chr5_4:65033965-65033984 Msa0864600:intron 35.0%
!! TCTCTACATTATGGTGGATT+AGG - chr5_4:65033971-65033990 Msa0864600:intron 35.0%
TAGCAATTCAGCTCAAACTA+GGG - chr5_4:65034012-65034031 Msa0864600:intron 35.0%
CTATATTACAGGTACAGAGA+TGG + chr5_4:65034077-65034096 None:intergenic 35.0%
CTCCAACTCCAAAAATTGTG+AGG + chr5_4:65030763-65030782 None:intergenic 40.0%
!!! CTCACAATTTTTGGAGTTGG+AGG - chr5_4:65030761-65030780 Msa0864600:intron 40.0%
!!! AATTTTTGGAGTTGGAGGAG+CGG - chr5_4:65030766-65030785 Msa0864600:intron 40.0%
!!! TTTTCTCAGCTTTGGAGACT+TGG - chr5_4:65030791-65030810 Msa0864600:intron 40.0%
!! TTTCTCAGCTTTGGAGACTT+GGG - chr5_4:65030792-65030811 Msa0864600:intron 40.0%
AGTGAGATAGGCAAAGCATA+TGG - chr5_4:65030857-65030876 Msa0864600:intron 40.0%
CAATGGAAGTAACCAAGCAA+AGG + chr5_4:65031077-65031096 None:intergenic 40.0%
! GATTGATGGTTCAGTGAGAT+TGG - chr5_4:65031521-65031540 Msa0864600:intron 40.0%
! CACATTTGAAATGTTTGCGG+CGG - chr5_4:65032100-65032119 Msa0864600:CDS 40.0%
CAGAAAACCTAATACTCCGA+TGG - chr5_4:65032200-65032219 Msa0864600:intron 40.0%
AAAACCTAATACTCCGATGG+TGG - chr5_4:65032203-65032222 Msa0864600:intron 40.0%
GCTGCAAATGCTTCATCAAA+TGG - chr5_4:65032225-65032244 Msa0864600:intron 40.0%
GTTTGGCTGAACATTGAGTT+AGG - chr5_4:65032603-65032622 Msa0864600:intron 40.0%
TGAAGCTTCCACAAAATCAC+AGG + chr5_4:65032644-65032663 None:intergenic 40.0%
AGTTCTCGATATGTTTGGCT+GGG + chr5_4:65032714-65032733 None:intergenic 40.0%
AAGTTCTCGATATGTTTGGC+TGG + chr5_4:65032715-65032734 None:intergenic 40.0%
AACCAAAAGTAGCATTCGAC+GGG - chr5_4:65032956-65032975 Msa0864600:intron 40.0%
CTGAAATCTCCTTCCAAAAG+TGG + chr5_4:65033157-65033176 None:intergenic 40.0%
!! CACTTTTGGAAGGAGATTTC+AGG - chr5_4:65033155-65033174 Msa0864600:intron 40.0%
CAATGGTAGAAACAAATCCC+CGG - chr5_4:65033313-65033332 Msa0864600:intron 40.0%
! ATACATTAGTCTCGGCATTG+TGG + chr5_4:65033351-65033370 None:intergenic 40.0%
CTGATGTGGAGGAATTTGAT+GGG - chr5_4:65033394-65033413 Msa0864600:intron 40.0%
GGAATTTGATGGGACTCATT+TGG - chr5_4:65033404-65033423 Msa0864600:intron 40.0%
!! GGGACTCATTTGGTGTTTAT+TGG - chr5_4:65033414-65033433 Msa0864600:intron 40.0%
TTGTTCAGGACTATTGAGTC+GGG - chr5_4:65033672-65033691 Msa0864600:intron 40.0%
AGGTTCAGCTGCAATTGAAA+GGG - chr5_4:65033832-65033851 Msa0864600:intron 40.0%
TGCAATTGAAAGGGTGGTTA+AGG - chr5_4:65033841-65033860 Msa0864600:intron 40.0%
CTTTGTCCCGGTAAATAGTA+AGG + chr5_4:65033894-65033913 None:intergenic 40.0%
AAACACTCTAGCAAGTGAAG+CGG + chr5_4:65033933-65033952 None:intergenic 40.0%
!! CATTATGGTGGATTAGGTGT+AGG - chr5_4:65033977-65033996 Msa0864600:intron 40.0%
ATTAGGTGTAGGCTATGCAT+TGG - chr5_4:65033988-65034007 Msa0864600:intron 40.0%
CTAGCAATTCAGCTCAAACT+AGG - chr5_4:65034011-65034030 Msa0864600:intron 40.0%
TAGGGTACAGCTGCAACAAA+AGG - chr5_4:65030659-65030678 Msa0864600:intron 45.0%
AGGGTACAGCTGCAACAAAA+GGG - chr5_4:65030660-65030679 Msa0864600:intron 45.0%
GGGGTTGCTGAGAAAAGAAA+AGG - chr5_4:65030680-65030699 Msa0864600:intron 45.0%
CTGTATCCAATTACACTCCC+TGG + chr5_4:65030716-65030735 None:intergenic 45.0%
GTAATTGGATACAGTGCTGC+CGG - chr5_4:65030722-65030741 Msa0864600:intron 45.0%
! TGAGACTGTGTCACTCAACT+TGG + chr5_4:65030837-65030856 None:intergenic 45.0%
GACACAGTCTCAAGTGAGAT+AGG - chr5_4:65030845-65030864 Msa0864600:intron 45.0%
GAAGTTCAGGGTTTGATCCT+TGG + chr5_4:65030938-65030957 None:intergenic 45.0%
TGCACATGGGAATCCCAATT+TGG + chr5_4:65031151-65031170 None:intergenic 45.0%
! GTAGCGCTGAAGAAGATACA+TGG - chr5_4:65031778-65031797 Msa0864600:intron 45.0%
AGAATTGCGTCGAGCAAAGT+TGG - chr5_4:65032174-65032193 Msa0864600:intron 45.0%
AATATACGTAAAGCCCCCGT+TGG - chr5_4:65032309-65032328 Msa0864600:intron 45.0%
TGGCTGAACATTGAGTTAGG+CGG - chr5_4:65032606-65032625 Msa0864600:intron 45.0%
! ACTGTGGACCTGTGATTTTG+TGG - chr5_4:65032633-65032652 Msa0864600:intron 45.0%
! GCAAGATGGTTCTACCTATG+TGG - chr5_4:65033123-65033142 Msa0864600:intron 45.0%
AGATTTCAGGGCTGTTCTTC+AGG - chr5_4:65033168-65033187 Msa0864600:intron 45.0%
GATTTCAGGGCTGTTCTTCA+GGG - chr5_4:65033169-65033188 Msa0864600:intron 45.0%
ATTTCAGGGCTGTTCTTCAG+GGG - chr5_4:65033170-65033189 Msa0864600:intron 45.0%
CGTGTATTCTCTGCTCACAA+TGG - chr5_4:65033296-65033315 Msa0864600:intron 45.0%
TAGAAACAAATCCCCGGAGT+TGG - chr5_4:65033319-65033338 Msa0864600:intron 45.0%
AGAAACAAATCCCCGGAGTT+GGG - chr5_4:65033320-65033339 Msa0864600:intron 45.0%
GATTGTAGGATGTCCTGATG+TGG - chr5_4:65033380-65033399 Msa0864600:intron 45.0%
CCATCAAATTCCTCCACATC+AGG + chr5_4:65033396-65033415 None:intergenic 45.0%
CCTGATGTGGAGGAATTTGA+TGG - chr5_4:65033393-65033412 Msa0864600:intron 45.0%
!! CATTTGGTGTTTATTGGGGC+TGG - chr5_4:65033420-65033439 Msa0864600:intron 45.0%
GAGGTTCAGCTGCAATTGAA+AGG - chr5_4:65033831-65033850 Msa0864600:intron 45.0%
TTCAGCTGCAATTGAAAGGG+TGG - chr5_4:65033835-65033854 Msa0864600:intron 45.0%
TGAAGTAATCCGGCAATAGC+TGG + chr5_4:65033869-65033888 None:intergenic 45.0%
ACATCTAGATCGCTTTGTCC+CGG + chr5_4:65033906-65033925 None:intergenic 45.0%
ACAGGTACAGAGATGGACAT+TGG + chr5_4:65034070-65034089 None:intergenic 45.0%
GGGTACAGCTGCAACAAAAG+GGG - chr5_4:65030661-65030680 Msa0864600:intron 50.0%
AGAAAAGGAAGAAGGGGTCC+AGG - chr5_4:65030695-65030714 Msa0864600:intron 50.0%
GAAAAGGAAGAAGGGGTCCA+GGG - chr5_4:65030696-65030715 Msa0864600:intron 50.0%
! GAGGAAAGCACAAACGCAAC+CGG + chr5_4:65030744-65030763 None:intergenic 50.0%
!! GAGCGGCTTTTTCTCAGCTT+TGG - chr5_4:65030783-65030802 Msa0864600:intron 50.0%
TCTTCAGCGCTACCCAAAGT+TGG + chr5_4:65031771-65031790 None:intergenic 50.0%
CTCCACCATGACACAATGTG+CGG + chr5_4:65032077-65032096 None:intergenic 50.0%
TTGCGGCGGAAAAGCTAGAT+AGG - chr5_4:65032114-65032133 Msa0864600:CDS 50.0%
! GAAGCATTTGCAGCCACCAT+CGG + chr5_4:65032219-65032238 None:intergenic 50.0%
ACGCTTCATCTGAGCACCAA+CGG + chr5_4:65032328-65032347 None:intergenic 50.0%
TGAGTTAGGCGGAATCACTG+TGG - chr5_4:65032617-65032636 Msa0864600:intron 50.0%
TCTCGATATGTTTGGCTGGG+CGG + chr5_4:65032711-65032730 None:intergenic 50.0%
!!! TGCCCGTCGAATGCTACTTT+TGG + chr5_4:65032961-65032980 None:intergenic 50.0%
AAGTAGCATTCGACGGGCAA+CGG - chr5_4:65032962-65032981 Msa0864600:intron 50.0%
ATTGTGGTCCTACCCAACTC+CGG + chr5_4:65033335-65033354 None:intergenic 50.0%
TGTAGGATGTCCTGATGTGG+AGG - chr5_4:65033383-65033402 Msa0864600:intron 50.0%
GATGCATTGTGGAACACCGA+CGG - chr5_4:65033763-65033782 Msa0864600:intron 50.0%
ATGCATTGTGGAACACCGAC+GGG - chr5_4:65033764-65033783 Msa0864600:intron 50.0%
ACTGCATTCTCCTTACCCGT+CGG + chr5_4:65033782-65033801 None:intergenic 50.0%
! GTTAAGGCACCAGCTATTGC+CGG - chr5_4:65033857-65033876 Msa0864600:intron 50.0%
AGGGATTCAAGCTTTGCTGC+AGG - chr5_4:65034031-65034050 Msa0864600:intron 50.0%
GGGATTCAAGCTTTGCTGCA+GGG - chr5_4:65034032-65034051 Msa0864600:intron 50.0%
GGATTCAAGCTTTGCTGCAG+GGG - chr5_4:65034033-65034052 Msa0864600:intron 50.0%
! AGGGGTCCAGGGAGTGTAAT+TGG - chr5_4:65030707-65030726 Msa0864600:intron 55.0%
TCGAGCCGCACATTGTGTCA+TGG - chr5_4:65032069-65032088 Msa0864600:CDS 55.0%
AGCCGCACATTGTGTCATGG+TGG - chr5_4:65032072-65032091 Msa0864600:CDS 55.0%
! GCAGCCACCATCGGAGTATT+AGG + chr5_4:65032210-65032229 None:intergenic 55.0%
CTTCATCTGAGCACCAACGG+GGG + chr5_4:65032325-65032344 None:intergenic 55.0%
GCTTCATCTGAGCACCAACG+GGG + chr5_4:65032326-65032345 None:intergenic 55.0%
CGCTTCATCTGAGCACCAAC+GGG + chr5_4:65032327-65032346 None:intergenic 55.0%
CGGGCAACGGTTCTCTTACA+AGG - chr5_4:65032975-65032994 Msa0864600:intron 55.0%
ACAAATCCCCGGAGTTGGGT+AGG - chr5_4:65033324-65033343 Msa0864600:intron 55.0%
TTGTGGTCCTACCCAACTCC+GGG + chr5_4:65033334-65033353 None:intergenic 55.0%
TTGTGGAACACCGACGGGTA+AGG - chr5_4:65033769-65033788 Msa0864600:intron 55.0%
CAGCATTGCCCGAGTTATGC+CGG - chr5_4:65033804-65033823 Msa0864600:intron 55.0%
ACCTCCACTCCGGCATAACT+CGG + chr5_4:65033816-65033835 None:intergenic 55.0%
TTGCAGCTGAACCTCCACTC+CGG + chr5_4:65033826-65033845 None:intergenic 55.0%
TGTGGTCCTACCCAACTCCG+GGG + chr5_4:65033333-65033352 None:intergenic 60.0%
TTGCCCGAGTTATGCCGGAG+TGG - chr5_4:65033809-65033828 Msa0864600:intron 60.0%
CCTCCACTCCGGCATAACTC+GGG + chr5_4:65033815-65033834 None:intergenic 60.0%
CCCGAGTTATGCCGGAGTGG+AGG - chr5_4:65033812-65033831 Msa0864600:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 65030201 65034096 65030201 ID=Msa0864600;Name=Msa0864600
chr5_4 mRNA 65030201 65034096 65030201 ID=Msa0864600-mRNA-1;Parent=Msa0864600;Name=Msa0864600-mRNA-1;_AED=0.21;_eAED=0.24;_QI=0|0.16|0|0.85|0.33|0.57|7|0|312
chr5_4 exon 65034092 65034096 65034092 ID=Msa0864600-mRNA-1:exon:20529;Parent=Msa0864600-mRNA-1
chr5_4 exon 65033648 65033684 65033648 ID=Msa0864600-mRNA-1:exon:20528;Parent=Msa0864600-mRNA-1
chr5_4 exon 65033440 65033635 65033440 ID=Msa0864600-mRNA-1:exon:20527;Parent=Msa0864600-mRNA-1
chr5_4 exon 65031929 65032161 65031929 ID=Msa0864600-mRNA-1:exon:20526;Parent=Msa0864600-mRNA-1
chr5_4 exon 65031301 65031375 65031301 ID=Msa0864600-mRNA-1:exon:20525;Parent=Msa0864600-mRNA-1
chr5_4 exon 65031153 65031207 65031153 ID=Msa0864600-mRNA-1:exon:20524;Parent=Msa0864600-mRNA-1
chr5_4 exon 65030201 65030538 65030201 ID=Msa0864600-mRNA-1:exon:20523;Parent=Msa0864600-mRNA-1
chr5_4 CDS 65034092 65034096 65034092 ID=Msa0864600-mRNA-1:cds;Parent=Msa0864600-mRNA-1
chr5_4 CDS 65033648 65033684 65033648 ID=Msa0864600-mRNA-1:cds;Parent=Msa0864600-mRNA-1
chr5_4 CDS 65033440 65033635 65033440 ID=Msa0864600-mRNA-1:cds;Parent=Msa0864600-mRNA-1
chr5_4 CDS 65031929 65032161 65031929 ID=Msa0864600-mRNA-1:cds;Parent=Msa0864600-mRNA-1
chr5_4 CDS 65031301 65031375 65031301 ID=Msa0864600-mRNA-1:cds;Parent=Msa0864600-mRNA-1
chr5_4 CDS 65031153 65031207 65031153 ID=Msa0864600-mRNA-1:cds;Parent=Msa0864600-mRNA-1
chr5_4 CDS 65030201 65030538 65030201 ID=Msa0864600-mRNA-1:cds;Parent=Msa0864600-mRNA-1
Gene Sequence

>Msa0864600

ATGTTGGTTGATGCTTTTTATACTTTAGAGTTGATTGGTTTGGGTACAGCTGCAACAAAAGGGGTTGCTGAGAAAAGAAAAGGAAGAAGGGGTCCAGGGAGTGTAATTGGATACAGTGCTGCCGGTTGCGTTTGTGCTTTCCTCACAATTTTTGGAGTTGGAGGAGCGGCTTTTTCTCAGCTTTGGAGACTTGGGTTTGTTGCAAGTTTTTGTACCAAGTTGAGTGACACAGTCTCAAGTTCAAGAAACAAAAAGAGAAGTGTCAATCGACACTTGAGAATTGCGTCGAGCAAAGTTGGTAGCAGAAAACCTAATACTCCGATGGTGGCTGCAAATGCTTCATCAAATGGAAGAAATTCAAAAACTGGTGTTAAATTCTCAAATGATACTGAGAGGCTTCAGCAGATTAATAATATACGTAAAGCCCCCGTTGGTGCTCAGATGAAGCGTGTTATTGATCTATTGCTTGAGGCTAACAAAGATGTTTTTGAGAGTCTGAGGAAAAAACCAAAAGTAGCATTCGACGGGCAACGGTTCTCTTACAAGCATGTTCTCATTTTCTTCTACATTATTTTAATGGCAAGATGGTTCTACCTATGTGGAATGATGCATTGTGGAACACCGACGGGTAAGGAGAATGCAGTTGCAGCATTGCCCGAGTTATGCCGGAGTGGAGGTTCAGCTGCAATTGAAAGGGTGGTTAAGGCACCAGCTATTGCCGGATTACTTCAAACCTTACTATTTACCGGGACAAAGCGATCTAGATGTAAAGCCGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTCTACATTATGGTGGATTAGGTGTAGGCTATGCATTGGCTAGCAATTCAGCTCAAACTAGGGATTCAAGCTTTGCTGCAGGGGATGTTTCAGTACCAATGTCCATCTCTGTACCTGTAATATAG

Protein sequence

>Msa0864600

MLVDAFYTLELIGLGTAATKGVAEKRKGRRGPGSVIGYSAAGCVCAFLTIFGVGGAAFSQLWRLGFVASFCTKLSDTVSSSRNKKRSVNRHLRIASSKVGSRKPNTPMVAANASSNGRNSKTGVKFSNDTERLQQINNIRKAPVGAQMKRVIDLLLEANKDVFESLRKKPKVAFDGQRFSYKHVLIFFYIILMARWFYLCGMMHCGTPTGKENAVAALPELCRSGGSAAIERVVKAPAIAGLLQTLLFTGTKRSRCKAASLARVFQRCENASLHYGGLGVGYALASNSAQTRDSSFAAGDVSVPMSISVPVI*