AlfalfaGEDB | Msa0337510

M. sativa cultivar zhongmu-4 / Msa0337510

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337510	RHN76102.1	89.583	96	10	0	2	97	254	349	7.18e-48	173

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337510	sp\|Q9XE58\|SCL14_ARATH	50.000	88	42	1	11	96	358	445	2.33e-21	91.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0337510	TF	GRAS

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008840	Msa0337510	0.813127	2.995439e-51	-8.615850e-47
Msa0012010	Msa0337510	0.800421	1.453003e-48	-8.615850e-47
Msa0026660	Msa0337510	0.809132	2.200789e-50	-8.615850e-47
Msa0027580	Msa0337510	0.803658	3.138207e-49	-8.615850e-47
Msa0033880	Msa0337510	0.812888	3.380341e-51	-8.615850e-47
Msa0036370	Msa0337510	0.805515	1.286394e-49	-8.615850e-47
Msa0047250	Msa0337510	0.805679	1.187939e-49	-8.615850e-47
Msa0047280	Msa0337510	0.834636	2.672608e-56	-8.615850e-47
Msa0049390	Msa0337510	0.812429	4.258616e-51	-8.615850e-47
Msa0052630	Msa0337510	0.817384	3.391359e-52	-8.615850e-47

Showing 1 to 10 of 226 entries

Previous1 2 3 4 5…23Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337510	MtrunA17_Chr2g0328391	89.583	96	10	0	2	97	254	349	6.61e-52	173
Msa0337510	MtrunA17_Chr4g0031711	63.889	72	26	0	26	97	340	411	2.76e-28	107
Msa0337510	MtrunA17_Chr4g0031721	56.522	92	38	1	7	96	274	365	1.88e-26	102
Msa0337510	MtrunA17_Chr4g0031701	62.857	70	26	0	28	97	235	304	6.49e-25	98.2
Msa0337510	MtrunA17_Chr7g0238891	57.500	80	34	0	29	108	354	433	2.10e-24	96.7
Msa0337510	MtrunA17_Chr4g0031731	61.429	70	27	0	28	97	235	304	2.26e-24	96.7
Msa0337510	MtrunA17_Chr2g0328381	58.462	65	27	0	32	96	260	324	9.63e-22	89.0
Msa0337510	MtrunA17_Chr2g0328361	57.812	64	27	0	33	96	260	323	3.99e-21	87.4
Msa0337510	MtrunA17_Chr2g0328341	60.317	63	22	1	37	96	259	321	5.10e-20	84.3
Msa0337510	MtrunA17_Chr2g0328401	56.338	71	29	1	27	95	268	338	4.83e-18	78.6

Showing 1 to 10 of 13 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337510	AT1G07530.1	50.000	88	42	1	11	96	358	445	2.36e-22	91.3
Msa0337510	AT1G07520.1	61.765	68	23	1	29	96	303	367	1.35e-20	86.3
Msa0337510	AT1G07520.3	61.765	68	23	1	29	96	304	368	1.35e-20	86.3
Msa0337510	AT1G07520.2	61.765	68	23	1	29	96	139	203	1.76e-20	85.9
Msa0337510	AT1G07520.4	61.765	68	23	1	29	96	139	203	1.76e-20	85.9
Msa0337510	AT2G37650.1	52.703	74	35	0	35	108	335	408	1.83e-19	83.2
Msa0337510	AT2G37650.2	52.703	74	35	0	35	108	323	396	1.95e-19	82.8
Msa0337510	AT2G29060.1	48.718	78	40	0	27	104	301	378	4.67e-19	81.6
Msa0337510	AT2G29060.2	48.718	78	40	0	27	104	264	341	4.69e-19	81.6
Msa0337510	AT2G29065.1	62.500	56	21	0	41	96	246	301	2.87e-15	70.9

Showing 1 to 10 of 14 entries

Previous1 2Next

Find 30 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGATGGATCAGTGGTG+GGG	0.638533	2_4:-57549302	Msa0337510:CDS
AAGGCACGTTCGAAGAAACA+AGG	0.620215	2_4:-57549246	Msa0337510:CDS
ACAAAAGGATGGATCAGTGG+TGG	0.605810	2_4:-57549304	Msa0337510:CDS
ACACAGGTTGGTGAACTTGA+TGG	0.468419	2_4:-57549273	Msa0337510:CDS
AGAGGGATGTTGTGGATTTG+AGG	0.451718	2_4:-57549218	Msa0337510:CDS
AGGAAGCATTCTTGTCCTTC+AGG	0.331779	2_4:-57549120	Msa0337510:CDS
AGGCACGTTCGAAGAAACAA+GGG	0.717525	2_4:-57549245	Msa0337510:CDS
AGGGAGGAAGAGGGATGTTG+TGG	0.530372	2_4:-57549226	Msa0337510:CDS
AGGTGATGCATCACAGAGAA+TGG	0.535230	2_4:-57549100	Msa0337510:CDS
AGGTTGGTGAACTTGATGGA+GGG	0.640702	2_4:-57549269	Msa0337510:CDS

Showing 1 to 10 of 30 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGAATTGTTGAAGCAGAAT+AGG	-	chr2_4:57548719-57548738	Msa0337510:intron	30.0%
AGTGACTATGACAATGTAAT+TGG	-	chr2_4:57549290-57549309	Msa0337510:CDS	30.0%
TTTCTGCTTACTTTCAGATA+TGG	+	chr2_4:57549323-57549342	None:intergenic	30.0%
ATGAATTGTTGAAGCAGAAT+AGG	-	chr2_4:57548719-57548738	Msa0337510:intron	30.0%
AGTGACTATGACAATGTAAT+TGG	-	chr2_4:57549290-57549309	Msa0337510:CDS	30.0%
TTTCTGCTTACTTTCAGATA+TGG	+	chr2_4:57549323-57549342	None:intergenic	30.0%
TTGTGTTTGTTCATGAAGGT+TGG	-	chr2_4:57549081-57549100	Msa0337510:CDS	35.0%
TTGTGTTTGTTCATGAAGGT+TGG	-	chr2_4:57549081-57549100	Msa0337510:CDS	35.0%
TGAACAAAAGGATGGATCAG+TGG	-	chr2_4:57548552-57548571	Msa0337510:CDS	40.0%
TTGTGCACACAGAACCAAAA+GGG	+	chr2_4:57548668-57548687	None:intergenic	40.0%

Showing 1 to 10 of 102 entries

Previous1 2 3 4 5…11Next

Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	57548529	57549352	57548529	ID=Msa0337510;Name=Msa0337510
chr2_4	mRNA	57548529	57549352	57548529	ID=Msa0337510-mRNA-1;Parent=Msa0337510;Name=Msa0337510-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|1\|0\|1\|0\|0.5\|2\|0\|121
chr2_4	exon	57548529	57548606	57548529	ID=Msa0337510-mRNA-1:exon:17533;Parent=Msa0337510-mRNA-1
chr2_4	exon	57549065	57549352	57549065	ID=Msa0337510-mRNA-1:exon:17532;Parent=Msa0337510-mRNA-1
chr2_4	CDS	57549065	57549352	57549065	ID=Msa0337510-mRNA-1:cds;Parent=Msa0337510-mRNA-1
chr2_4	CDS	57548529	57548606	57548529	ID=Msa0337510-mRNA-1:cds;Parent=Msa0337510-mRNA-1

Gene Sequence	>Msa0337510 AAAGAAAATGTGTCGTTGCGTGCTGAACAAAAGGATGGATCAGTGGTGGGGAGTAGAACACAGGTTGGTGAACTTGATGGAGGGAAGGCACGTTCGAAGAAACAAGGGAGGAAGAGGGATGTTGTGGATTTGAGGACCCTTTTGGTTCTGTGTGCACAAGCTGTGTCTGCTAATGACAATAGGACTGCTAATGAATTGTTGAAGCAGAATAGGAAGCATTCTTGTCCTTCAGGTGATGCATCACAGAGAATGGCTCATTACTTTGCGAATGCGATTGAAGCGCGCATGATTCAAGTCAACAGAAGTGACTATGACAATGTAATTGGAGCTTTGCCATATCTGAAAGTAAGCAGAAAAGCTATGTAA
Protein sequence	>Msa0337510 KENVSLRAEQKDGSVVGSRTQVGELDGGKARSKKQGRKRDVVDLRTLLVLCAQAVSANDNRTANELLKQNRKHSCPSGDASQRMAHYFANAIEARMIQVNRSDYDNVIGALPYLKVSRKAM*