Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0719080 | Msa0757710 | 0.806058 | 9.892536e-50 | -8.615850e-47 |
| Msa0719090 | Msa0757710 | 0.809167 | 2.162802e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 54 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTATATCTCCGGCGTTTC+CGG | 0.211833 | 5_2:+12664790 | None:intergenic |
| AACATAAAACTGACCTTAAA+AGG | 0.218616 | 5_2:+12667318 | None:intergenic |
| AATCAGTGGTCAAGATTAAA+AGG | 0.220840 | 5_2:+12664540 | None:intergenic |
| GTTTCTGATATGGTGGTTTC+CGG | 0.223259 | 5_2:+12667360 | None:intergenic |
| ACCGATGCTACGGTTGTTTC+CGG | 0.245396 | 5_2:+12665024 | None:intergenic |
| GTTTCCAGCACGGTGGTTTC+CGG | 0.264988 | 5_2:+12667390 | None:intergenic |
| CTGCATCTAAACAGATTCTT+TGG | 0.278750 | 5_2:+12664856 | None:intergenic |
| TGATCTAGAAATGTTATTGC+AGG | 0.355062 | 5_2:+12666532 | None:intergenic |
| GGTGAAACCGGTTTCTGATA+TGG | 0.373395 | 5_2:+12667350 | None:intergenic |
| AATGATTGAAGAAAGCTTAA+CGG | 0.381828 | 5_2:+12665163 | None:intergenic |
| ATAAGTGTTATTGTGTTCCT+TGG | 0.393378 | 5_2:+12664567 | None:intergenic |
| GAAATCTGCAATTGCTTTGT+GGG | 0.394695 | 5_2:-12664626 | Msa0757710:CDS |
| GCCAATTGTGGTTGTGGTGG+TGG | 0.403300 | 5_2:-12664666 | Msa0757710:CDS |
| ATCTTCTACGTTGAGTTTGT+CGG | 0.410442 | 5_2:-12665072 | Msa0757710:CDS |
| GGTGGATTTGACTTAGAAAC+TGG | 0.413626 | 5_2:-12664648 | Msa0757710:CDS |
| GTGAAGAGGAGAAGAAGAAA+TGG | 0.413826 | 5_2:-12664602 | Msa0757710:CDS |
| TCCACCACCACAACCACAAT+TGG | 0.416578 | 5_2:+12664665 | None:intergenic |
| CTCGGCGGCGACGTTGGAAC+CGG | 0.432968 | 5_2:-12665043 | Msa0757710:CDS |
| CATAAATACAAATAATGAAA+AGG | 0.435578 | 5_2:-12666494 | Msa0757710:intron |
| TTTGAATATATGATTTCAAA+AGG | 0.435804 | 5_2:-12666096 | Msa0757710:intron |
| TGAAGAGGAGAAGAAGAAAT+GGG | 0.438665 | 5_2:-12664601 | Msa0757710:CDS |
| GGAAATCTGCAATTGCTTTG+TGG | 0.442290 | 5_2:-12664627 | Msa0757710:CDS |
| CAGAAAATTGCAGCCAATTG+TGG | 0.450071 | 5_2:-12664678 | Msa0757710:CDS |
| TGGCGACTCGGCGGCGACGT+TGG | 0.483539 | 5_2:-12665049 | Msa0757710:CDS |
| GACCTTAAAAGGCATATAAG+AGG | 0.484811 | 5_2:+12667329 | None:intergenic |
| AGAAAGCTTAACGGAGAAGT+TGG | 0.484830 | 5_2:+12665172 | None:intergenic |
| AGGCATATAAGAGGTGAAAC+CGG | 0.497332 | 5_2:+12667338 | None:intergenic |
| TATCTCCGGCGTTTCCGGCA+TGG | 0.499393 | 5_2:+12664795 | None:intergenic |
| CGTGCTGGAAACCGCCGTGC+CGG | 0.500731 | 5_2:-12667379 | Msa0757710:CDS |
| TGATATGGTGGTTTCCGGCA+CGG | 0.507646 | 5_2:+12667365 | None:intergenic |
| CGGCACGGCGGTTTCCAGCA+CGG | 0.510228 | 5_2:+12667380 | None:intergenic |
| TTAATCACAAAGTATATCTC+CGG | 0.521714 | 5_2:+12664781 | None:intergenic |
| GAAACCACCATATCAGAAAC+CGG | 0.527669 | 5_2:-12667357 | Msa0757710:CDS |
| TATGCCGGAAACCACCGTGC+TGG | 0.530445 | 5_2:-12667394 | Msa0757710:CDS |
| TGAGTTTGTCGGTGGCGACT+CGG | 0.534292 | 5_2:-12665061 | Msa0757710:CDS |
| GACAACCATGCCGGAAACGC+CGG | 0.543153 | 5_2:-12664800 | Msa0757710:CDS |
| ATTGCAGCCAATTGTGGTTG+TGG | 0.544404 | 5_2:-12664672 | Msa0757710:CDS |
| AATGGGGTTTATTAGATCCA+AGG | 0.546093 | 5_2:-12664584 | Msa0757710:CDS |
| AAATCTGCAATTGCTTTGTG+GGG | 0.549674 | 5_2:-12664625 | Msa0757710:CDS |
| GAGGTTGAAACCGTTGCAAA+AGG | 0.566617 | 5_2:+12665098 | None:intergenic |
| ACAGAGGAACGAGGAGTGTG+TGG | 0.595809 | 5_2:+12665136 | None:intergenic |
| TTCTACGTTGAGTTTGTCGG+TGG | 0.602115 | 5_2:-12665069 | Msa0757710:CDS |
| GCAGCCAATTGTGGTTGTGG+TGG | 0.610770 | 5_2:-12664669 | Msa0757710:CDS |
| GAAACCGGTTTCTGATATGG+TGG | 0.611503 | 5_2:+12667353 | None:intergenic |
| GAAGAGGAGAAGAAGAAATG+GGG | 0.633975 | 5_2:-12664600 | Msa0757710:CDS |
| AGATGCTGCAACTTCACAGT+CGG | 0.634657 | 5_2:-12664835 | Msa0757710:CDS |
| GTGATGATTCTGTGGAACAG+AGG | 0.636691 | 5_2:+12665120 | None:intergenic |
| TGCAAAAGGTGATGATTCTG+TGG | 0.655691 | 5_2:+12665112 | None:intergenic |
| AATCTGCAATTGCTTTGTGG+GGG | 0.686751 | 5_2:-12664624 | Msa0757710:CDS |
| TTCTGTGGAACAGAGGAACG+AGG | 0.687296 | 5_2:+12665127 | None:intergenic |
| GTTTGTCGGTGGCGACTCGG+CGG | 0.687575 | 5_2:-12665058 | Msa0757710:CDS |
| ACTCAACGTAGAAGATGCTG+AGG | 0.693599 | 5_2:+12665079 | None:intergenic |
| CACGGCGGTTTCCAGCACGG+TGG | 0.715512 | 5_2:+12667383 | None:intergenic |
| TATGGTGGTTTCCGGCACGG+CGG | 0.755787 | 5_2:+12667368 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAACAATAATATTTTTTT+TGG | - | chr5_2:12665098-12665117 | Msa0757710:CDS | 10.0% |
| !! | AGAATTACTAAATTATTAAT+TGG | + | chr5_2:12665311-12665330 | None:intergenic | 10.0% |
| !!! | CATTTTTTTTATTCATTTTT+TGG | + | chr5_2:12666627-12666646 | None:intergenic | 10.0% |
| !!! | AAAATAAAATTTTGTTTTGC+TGG | - | chr5_2:12664770-12664789 | Msa0757710:intron | 15.0% |
| !!! | TTTATTATAGATCTTTTTGT+TGG | + | chr5_2:12664885-12664904 | None:intergenic | 15.0% |
| !!! | TAATTTATTTTTGAACTTCA+TGG | - | chr5_2:12664944-12664963 | Msa0757710:intron | 15.0% |
| !!! | AATTTATTTTTGAACTTCAT+GGG | - | chr5_2:12664945-12664964 | Msa0757710:intron | 15.0% |
| !!! | CTATAAAAAAAACTCATTTT+TGG | - | chr5_2:12665038-12665057 | Msa0757710:CDS | 15.0% |
| !!! | ACAATAATATTTTTTTTGGA+CGG | - | chr5_2:12665102-12665121 | Msa0757710:CDS | 15.0% |
| !! | AACATTGCAAAATAAAATTA+AGG | - | chr5_2:12665153-12665172 | Msa0757710:CDS | 15.0% |
| !!! | ATTAGAAATTTATTTTGTTG+AGG | - | chr5_2:12665271-12665290 | Msa0757710:intron | 15.0% |
| !! | CATAAATACAAATAATGAAA+AGG | - | chr5_2:12665441-12665460 | Msa0757710:intron | 15.0% |
| !!! | AAATGAACTTTTTTTTTTTG+AGG | - | chr5_2:12665511-12665530 | Msa0757710:intron | 15.0% |
| !!! | AATGAACTTTTTTTTTTTGA+GGG | - | chr5_2:12665512-12665531 | Msa0757710:intron | 15.0% |
| !! | TTTGAATATATGATTTCAAA+AGG | - | chr5_2:12665839-12665858 | Msa0757710:intron | 15.0% |
| !!! | CTTTTTTTCTTATATTAAGA+AGG | - | chr5_2:12666205-12666224 | Msa0757710:intron | 15.0% |
| !!! | AAAGTCATTTTTTTTAATAG+GGG | + | chr5_2:12666316-12666335 | None:intergenic | 15.0% |
| !!! | GAAAGTCATTTTTTTTAATA+GGG | + | chr5_2:12666317-12666336 | None:intergenic | 15.0% |
| !!! | TTTTTATTCATTTTTTGGAT+TGG | + | chr5_2:12666622-12666641 | None:intergenic | 15.0% |
| !! | TGAAAAAAGAAAATATGTAA+AGG | - | chr5_2:12666645-12666664 | Msa0757710:intron | 15.0% |
| !! | ATGCATCAAAAGAAAATTAA+GGG | - | chr5_2:12664690-12664709 | Msa0757710:intron | 20.0% |
| !! | TTCTTATGATGAAACAAAAT+TGG | - | chr5_2:12664731-12664750 | Msa0757710:intron | 20.0% |
| !!! | AAAAAAAACTCATTTTTGGA+CGG | - | chr5_2:12665042-12665061 | Msa0757710:CDS | 20.0% |
| !!! | ACTCTTCAATTTTATTTTGT+AGG | + | chr5_2:12665693-12665712 | None:intergenic | 20.0% |
| !! | AATATATGATTTCAAAAGGT+TGG | - | chr5_2:12665843-12665862 | Msa0757710:intron | 20.0% |
| !!! | AAATATAGTTGCTTCTAAAA+TGG | + | chr5_2:12666235-12666254 | None:intergenic | 20.0% |
| !! | AAGCAACTATATTTCAATAA+AGG | - | chr5_2:12666241-12666260 | Msa0757710:intron | 20.0% |
| !!! | AAGTCATTTTTTTTAATAGG+GGG | + | chr5_2:12666315-12666334 | None:intergenic | 20.0% |
| !!! | GGAAAGTCATTTTTTTTAAT+AGG | + | chr5_2:12666318-12666337 | None:intergenic | 20.0% |
| !!! | TTTTAATCATAAGGCTAATA+GGG | + | chr5_2:12666413-12666432 | None:intergenic | 20.0% |
| !!! | TTTTTAATCATAAGGCTAAT+AGG | + | chr5_2:12666414-12666433 | None:intergenic | 20.0% |
| !! | GAAAATGAAATAGTAATGAA+TGG | + | chr5_2:12666495-12666514 | None:intergenic | 20.0% |
| !! | AAAGAAAATATGTAAAGGAT+TGG | - | chr5_2:12666650-12666669 | Msa0757710:intron | 20.0% |
| ! | AACATAAAACTGACCTTAAA+AGG | + | chr5_2:12664620-12664639 | None:intergenic | 25.0% |
| ! | CATGCATCAAAAGAAAATTA+AGG | - | chr5_2:12664689-12664708 | Msa0757710:intron | 25.0% |
| ! | AAGAAAATTAAGGGTTTGAT+TGG | - | chr5_2:12664699-12664718 | Msa0757710:intron | 25.0% |
| !!! | CCTCTTTAATTTTATTTTGC+AGG | + | chr5_2:12665642-12665661 | None:intergenic | 25.0% |
| ! | CCTGCAAAATAAAATTAAAG+AGG | - | chr5_2:12665639-12665658 | Msa0757710:intron | 25.0% |
| ! | TAAAATTAAAGAGGAGAAGA+TGG | - | chr5_2:12665648-12665667 | Msa0757710:intron | 25.0% |
| ! | TAAAATTGAAGAGTAGAAGA+TGG | - | chr5_2:12665699-12665718 | Msa0757710:intron | 25.0% |
| !!! | AGGTTGGTGTTTTAAAATTT+AGG | - | chr5_2:12665859-12665878 | Msa0757710:intron | 25.0% |
| !!! | GGTTGGTGTTTTAAAATTTA+GGG | - | chr5_2:12665860-12665879 | Msa0757710:intron | 25.0% |
| !!! | GTTGGTGTTTTAAAATTTAG+GGG | - | chr5_2:12665861-12665880 | Msa0757710:intron | 25.0% |
| !!! | TTGGTGTTTTAAAATTTAGG+GGG | - | chr5_2:12665862-12665881 | Msa0757710:intron | 25.0% |
| !! | TTAATGATGTCATAGTGTTT+TGG | + | chr5_2:12666064-12666083 | None:intergenic | 25.0% |
| !!! | GGTTAAATTTGTTTTTTCCA+CGG | - | chr5_2:12666179-12666198 | Msa0757710:intron | 25.0% |
| ! | TTTAATCATAAGGCTAATAG+GGG | + | chr5_2:12666412-12666431 | None:intergenic | 25.0% |
| !!! | ACCACTGATTTTTAATCATA+AGG | + | chr5_2:12666422-12666441 | None:intergenic | 25.0% |
| ! | AATGAAATAGTAATGAATGG+AGG | + | chr5_2:12666492-12666511 | None:intergenic | 25.0% |
| ! | GAAGAAATGAATTAGGATTT+GGG | + | chr5_2:12666577-12666596 | None:intergenic | 25.0% |
| ! | TGAAGAAATGAATTAGGATT+TGG | + | chr5_2:12666578-12666597 | None:intergenic | 25.0% |
| ! | TGAAGATGAAGAAATGAATT+AGG | + | chr5_2:12666584-12666603 | None:intergenic | 25.0% |
| ! | AATGATTGAAGAAAGCTTAA+CGG | + | chr5_2:12666775-12666794 | None:intergenic | 25.0% |
| ! | TTAATCACAAAGTATATCTC+CGG | + | chr5_2:12667157-12667176 | None:intergenic | 25.0% |
| TGATCTAGAAATGTTATTGC+AGG | + | chr5_2:12665406-12665425 | None:intergenic | 30.0% | |
| ! | ACTTTTCTGTTTCCAAAAAC+AGG | + | chr5_2:12665792-12665811 | None:intergenic | 30.0% |
| !!! | TGGTGTTTTAAAATTTAGGG+GGG | - | chr5_2:12665863-12665882 | Msa0757710:intron | 30.0% |
| CGAAATTTGAATTGTGTGAT+AGG | - | chr5_2:12665891-12665910 | Msa0757710:intron | 30.0% | |
| TTTGAATTGTGTGATAGGAT+AGG | - | chr5_2:12665896-12665915 | Msa0757710:intron | 30.0% | |
| AGTTGATCTATGAATATACC+AGG | - | chr5_2:12665981-12666000 | Msa0757710:intron | 30.0% | |
| ATGTAACTAAAAAGCTTACC+TGG | + | chr5_2:12666002-12666021 | None:intergenic | 30.0% | |
| !!! | GGTAAGCTTTTTAGTTACAT+TGG | - | chr5_2:12666002-12666021 | Msa0757710:intron | 30.0% |
| TATAAGAAAAAAAGATGCCG+TGG | + | chr5_2:12666199-12666218 | None:intergenic | 30.0% | |
| ! | TAAAGGCTAAAATGCACTTT+TGG | - | chr5_2:12666258-12666277 | Msa0757710:intron | 30.0% |
| TTAATCATAAGGCTAATAGG+GGG | + | chr5_2:12666411-12666430 | None:intergenic | 30.0% | |
| GCCTTATGATTAAAAATCAG+TGG | - | chr5_2:12666418-12666437 | Msa0757710:intron | 30.0% | |
| AAATAGTAATGAATGGAGGA+GGG | + | chr5_2:12666488-12666507 | None:intergenic | 30.0% | |
| ATAGAAGAGTGAAGAAGAAT+GGG | + | chr5_2:12666724-12666743 | None:intergenic | 30.0% | |
| AATAGAAGAGTGAAGAAGAA+TGG | + | chr5_2:12666725-12666744 | None:intergenic | 30.0% | |
| ! | ATAAGTGTTATTGTGTTCCT+TGG | + | chr5_2:12667371-12667390 | None:intergenic | 30.0% |
| ! | CACCTCTTATATGCCTTTTA+AGG | - | chr5_2:12664604-12664623 | Msa0757710:CDS | 35.0% |
| ! | GACCTTAAAAGGCATATAAG+AGG | + | chr5_2:12664609-12664628 | None:intergenic | 35.0% |
| !!! | GATGTCATAGTGTTTTGGTT+TGG | + | chr5_2:12666059-12666078 | None:intergenic | 35.0% |
| TTACCCTTAAATTGTTTGCG+TGG | - | chr5_2:12666141-12666160 | Msa0757710:intron | 35.0% | |
| AATAGTAATGAATGGAGGAG+GGG | + | chr5_2:12666487-12666506 | None:intergenic | 35.0% | |
| GAAATAGTAATGAATGGAGG+AGG | + | chr5_2:12666489-12666508 | None:intergenic | 35.0% | |
| !!! | TGCTGGTGTTGTTATTCTTT+TGG | + | chr5_2:12666529-12666548 | None:intergenic | 35.0% |
| ! | AGAATCATCACCTTTTGCAA+CGG | - | chr5_2:12666827-12666846 | Msa0757710:intron | 35.0% |
| ATCTTCTACGTTGAGTTTGT+CGG | - | chr5_2:12666863-12666882 | Msa0757710:intron | 35.0% | |
| ! | GTTGTTGTTGACAGTTGAAT+CGG | - | chr5_2:12666959-12666978 | Msa0757710:intron | 35.0% |
| TCGGTTTAATAAAACCGACT+TGG | - | chr5_2:12666978-12666997 | Msa0757710:intron | 35.0% | |
| !! | AATAAAACCGACTTGGCTTT+CGG | - | chr5_2:12666985-12667004 | Msa0757710:intron | 35.0% |
| CTGCATCTAAACAGATTCTT+TGG | + | chr5_2:12667082-12667101 | None:intergenic | 35.0% | |
| !!! | AATTTTTTCGACAACCATGC+CGG | - | chr5_2:12667126-12667145 | Msa0757710:intron | 35.0% |
| TTGTTAGAAACTCCAAACAG+AGG | - | chr5_2:12667183-12667202 | Msa0757710:intron | 35.0% | |
| ! | CTTTTATCCAATCCTCTGTT+TGG | + | chr5_2:12667198-12667217 | None:intergenic | 35.0% |
| AAAAGTTCCAAATCGCATGA+TGG | - | chr5_2:12667213-12667232 | Msa0757710:intron | 35.0% | |
| GAAATCTGCAATTGCTTTGT+GGG | - | chr5_2:12667309-12667328 | Msa0757710:intron | 35.0% | |
| AAATCTGCAATTGCTTTGTG+GGG | - | chr5_2:12667310-12667329 | Msa0757710:intron | 35.0% | |
| TGAAGAGGAGAAGAAGAAAT+GGG | - | chr5_2:12667334-12667353 | Msa0757710:CDS | 35.0% | |
| AATGGGGTTTATTAGATCCA+AGG | - | chr5_2:12667351-12667370 | Msa0757710:CDS | 35.0% | |
| GTTTCTGATATGGTGGTTTC+CGG | + | chr5_2:12664578-12664597 | None:intergenic | 40.0% | |
| GAAACCACCATATCAGAAAC+CGG | - | chr5_2:12664578-12664597 | Msa0757710:CDS | 40.0% | |
| AGGCATATAAGAGGTGAAAC+CGG | + | chr5_2:12664600-12664619 | None:intergenic | 40.0% | |
| ! | TCTCTTCTCTCACCTGTTTT+TGG | - | chr5_2:12665777-12665796 | Msa0757710:intron | 40.0% |
| GTGTGATAGGATAGGACAAT+AGG | - | chr5_2:12665904-12665923 | Msa0757710:intron | 40.0% | |
| ATAGGACAATAGGTAAGTGC+TGG | - | chr5_2:12665914-12665933 | Msa0757710:intron | 40.0% | |
| ! | TGCTGGCTGACATTGAAAAA+TGG | - | chr5_2:12665931-12665950 | Msa0757710:intron | 40.0% |
| GCTGGCTGACATTGAAAAAT+GGG | - | chr5_2:12665932-12665951 | Msa0757710:intron | 40.0% | |
| CTGCCACGCAAACAATTTAA+GGG | + | chr5_2:12666147-12666166 | None:intergenic | 40.0% | |
| TCTGCCACGCAAACAATTTA+AGG | + | chr5_2:12666148-12666167 | None:intergenic | 40.0% | |
| TAAATTGTTTGCGTGGCAGA+AGG | - | chr5_2:12666148-12666167 | Msa0757710:intron | 40.0% | |
| !! | TAATTTTGACCCGGTCAACT+CGG | - | chr5_2:12666382-12666401 | Msa0757710:intron | 40.0% |
| AGGGGAAATTAGCAAAGAGA+GGG | + | chr5_2:12666469-12666488 | None:intergenic | 40.0% | |
| GAGTGAAGAAGAATGGGAAT+GGG | + | chr5_2:12666718-12666737 | None:intergenic | 40.0% | |
| AGAGTGAAGAAGAATGGGAA+TGG | + | chr5_2:12666719-12666738 | None:intergenic | 40.0% | |
| AGAAAGCTTAACGGAGAAGT+TGG | + | chr5_2:12666766-12666785 | None:intergenic | 40.0% | |
| TGCAAAAGGTGATGATTCTG+TGG | + | chr5_2:12666826-12666845 | None:intergenic | 40.0% | |
| ACATAACACTACCGATGCTA+CGG | + | chr5_2:12666924-12666943 | None:intergenic | 40.0% | |
| AGAAACTCCAAACAGAGGAT+TGG | - | chr5_2:12667188-12667207 | Msa0757710:intron | 40.0% | |
| CAGAAAATTGCAGCCAATTG+TGG | - | chr5_2:12667257-12667276 | Msa0757710:intron | 40.0% | |
| ! | GGTGGATTTGACTTAGAAAC+TGG | - | chr5_2:12667287-12667306 | Msa0757710:intron | 40.0% |
| GGAAATCTGCAATTGCTTTG+TGG | - | chr5_2:12667308-12667327 | Msa0757710:intron | 40.0% | |
| AATCTGCAATTGCTTTGTGG+GGG | - | chr5_2:12667311-12667330 | Msa0757710:intron | 40.0% | |
| GTGAAGAGGAGAAGAAGAAA+TGG | - | chr5_2:12667333-12667352 | Msa0757710:CDS | 40.0% | |
| GAAGAGGAGAAGAAGAAATG+GGG | - | chr5_2:12667335-12667354 | Msa0757710:CDS | 40.0% | |
| ! | GAAACCGGTTTCTGATATGG+TGG | + | chr5_2:12664585-12664604 | None:intergenic | 45.0% |
| ! | GGTGAAACCGGTTTCTGATA+TGG | + | chr5_2:12664588-12664607 | None:intergenic | 45.0% |
| ATAGGGGGCCAAAATTGCTA+CGG | + | chr5_2:12666300-12666319 | None:intergenic | 45.0% | |
| TTGCAAAAGGGGGTGAAGTT+GGG | + | chr5_2:12666346-12666365 | None:intergenic | 45.0% | |
| TGACCGGGTCAAAATTAGGA+GGG | + | chr5_2:12666379-12666398 | None:intergenic | 45.0% | |
| TTGACCGGGTCAAAATTAGG+AGG | + | chr5_2:12666380-12666399 | None:intergenic | 45.0% | |
| GAGTTGACCGGGTCAAAATT+AGG | + | chr5_2:12666383-12666402 | None:intergenic | 45.0% | |
| GAGGGGAAATTAGCAAAGAG+AGG | + | chr5_2:12666470-12666489 | None:intergenic | 45.0% | |
| CCACAAGTTTCAGAAGTTGC+TGG | + | chr5_2:12666546-12666565 | None:intergenic | 45.0% | |
| !! | CCAGCAACTTCTGAAACTTG+TGG | - | chr5_2:12666543-12666562 | Msa0757710:CDS | 45.0% |
| GAAGAAGAATGGGAATGGGA+AGG | + | chr5_2:12666714-12666733 | None:intergenic | 45.0% | |
| ! | GGAGAAGTTGGTTTCTGTGA+AGG | + | chr5_2:12666754-12666773 | None:intergenic | 45.0% |
| GTGATGATTCTGTGGAACAG+AGG | + | chr5_2:12666818-12666837 | None:intergenic | 45.0% | |
| GAGGTTGAAACCGTTGCAAA+AGG | + | chr5_2:12666840-12666859 | None:intergenic | 45.0% | |
| ACTCAACGTAGAAGATGCTG+AGG | + | chr5_2:12666859-12666878 | None:intergenic | 45.0% | |
| TTCTACGTTGAGTTTGTCGG+TGG | - | chr5_2:12666866-12666885 | Msa0757710:intron | 45.0% | |
| AGATGCTGCAACTTCACAGT+CGG | - | chr5_2:12667100-12667119 | Msa0757710:intron | 45.0% | |
| AAGTATATCTCCGGCGTTTC+CGG | + | chr5_2:12667148-12667167 | None:intergenic | 45.0% | |
| TCCAAATCGCATGATGGTTG+TGG | - | chr5_2:12667219-12667238 | Msa0757710:intron | 45.0% | |
| ACCACAACCATCATGCGATT+TGG | + | chr5_2:12667223-12667242 | None:intergenic | 45.0% | |
| ATTGCAGCCAATTGTGGTTG+TGG | - | chr5_2:12667263-12667282 | Msa0757710:intron | 45.0% | |
| !!! | AAAAATAAATTATTTCTTTT+TGG | + | chr5_2:12664936-12664955 | None:intergenic | 5.0% |
| TGATATGGTGGTTTCCGGCA+CGG | + | chr5_2:12664573-12664592 | None:intergenic | 50.0% | |
| ! | CACTTTTGGCCCCCTAAGTT+TGG | - | chr5_2:12666272-12666291 | Msa0757710:intron | 50.0% |
| TTGCTACGGGGCCAAACTTA+GGG | + | chr5_2:12666286-12666305 | None:intergenic | 50.0% | |
| ATTGCTACGGGGCCAAACTT+AGG | + | chr5_2:12666287-12666306 | None:intergenic | 50.0% | |
| ! | GTTTGGCCCCGTAGCAATTT+TGG | - | chr5_2:12666289-12666308 | Msa0757710:intron | 50.0% |
| TAGGGGGCCAAAATTGCTAC+GGG | + | chr5_2:12666299-12666318 | None:intergenic | 50.0% | |
| TGCAAAAGGGGGTGAAGTTG+GGG | + | chr5_2:12666345-12666364 | None:intergenic | 50.0% | |
| GTTGCAAAAGGGGGTGAAGT+TGG | + | chr5_2:12666347-12666366 | None:intergenic | 50.0% | |
| ! | CTTCACCCCCTTTTGCAACT+CGG | - | chr5_2:12666348-12666367 | Msa0757710:intron | 50.0% |
| ACCGGGTCAAAATTAGGAGG+GGG | + | chr5_2:12666377-12666396 | None:intergenic | 50.0% | |
| GACCGGGTCAAAATTAGGAG+GGG | + | chr5_2:12666378-12666397 | None:intergenic | 50.0% | |
| AGGAATAGAGAGGAGTGAGG+TGG | + | chr5_2:12666694-12666713 | None:intergenic | 50.0% | |
| GGAAGGAATAGAGAGGAGTG+AGG | + | chr5_2:12666697-12666716 | None:intergenic | 50.0% | |
| GGGAATGGGAAGGAATAGAG+AGG | + | chr5_2:12666704-12666723 | None:intergenic | 50.0% | |
| TTCTGTGGAACAGAGGAACG+AGG | + | chr5_2:12666811-12666830 | None:intergenic | 50.0% | |
| ACCGGAAACAACCGTAGCAT+CGG | - | chr5_2:12666910-12666929 | Msa0757710:intron | 50.0% | |
| ! | ACCGATGCTACGGTTGTTTC+CGG | + | chr5_2:12666914-12666933 | None:intergenic | 50.0% |
| CCTCAAACCGAAAGCCAAGT+CGG | + | chr5_2:12666995-12667014 | None:intergenic | 50.0% | |
| TCCACCACCACAACCACAAT+TGG | + | chr5_2:12667273-12667292 | None:intergenic | 50.0% | |
| ATTGCTTTGTGGGGGTGAAG+AGG | - | chr5_2:12667319-12667338 | Msa0757710:intron | 50.0% | |
| GTTTCCAGCACGGTGGTTTC+CGG | + | chr5_2:12664548-12664567 | None:intergenic | 55.0% | |
| TGCGTGGCAGAAGGTTAGCA+TGG | - | chr5_2:12666157-12666176 | Msa0757710:intron | 55.0% | |
| GCGTGGCAGAAGGTTAGCAT+GGG | - | chr5_2:12666158-12666177 | Msa0757710:intron | 55.0% | |
| TGCTACGGGGCCAAACTTAG+GGG | + | chr5_2:12666285-12666304 | None:intergenic | 55.0% | |
| AGGGGGCCAAAATTGCTACG+GGG | + | chr5_2:12666298-12666317 | None:intergenic | 55.0% | |
| CAAAAGGGGGTGAAGTTGGG+GGG | + | chr5_2:12666343-12666362 | None:intergenic | 55.0% | |
| GCAAAAGGGGGTGAAGTTGG+GGG | + | chr5_2:12666344-12666363 | None:intergenic | 55.0% | |
| !! | GCCCCCTCCTAATTTTGACC+CGG | - | chr5_2:12666373-12666392 | Msa0757710:intron | 55.0% |
| ! | TTTTGACCCGGTCAACTCGG+TGG | - | chr5_2:12666385-12666404 | Msa0757710:intron | 55.0% |
| ! | GCAAAGAGAGGGAGCATGTG+AGG | + | chr5_2:12666458-12666477 | None:intergenic | 55.0% |
| ! | ACAGAGGAACGAGGAGTGTG+TGG | + | chr5_2:12666802-12666821 | None:intergenic | 55.0% |
| TGAGTTTGTCGGTGGCGACT+CGG | - | chr5_2:12666874-12666893 | Msa0757710:intron | 55.0% | |
| !! | CCGACTTGGCTTTCGGTTTG+AGG | - | chr5_2:12666992-12667011 | Msa0757710:intron | 55.0% |
| GCAGCCAATTGTGGTTGTGG+TGG | - | chr5_2:12667266-12667285 | Msa0757710:intron | 55.0% | |
| GCCAATTGTGGTTGTGGTGG+TGG | - | chr5_2:12667269-12667288 | Msa0757710:intron | 55.0% | |
| TATGGTGGTTTCCGGCACGG+CGG | + | chr5_2:12664570-12664589 | None:intergenic | 60.0% | |
| GCTACGGGGCCAAACTTAGG+GGG | + | chr5_2:12666284-12666303 | None:intergenic | 60.0% | |
| ! | CACCCCCTTTTGCAACTCGG+TGG | - | chr5_2:12666351-12666370 | Msa0757710:intron | 60.0% |
| GGCCACCGAGTTGCAAAAGG+GGG | + | chr5_2:12666356-12666375 | None:intergenic | 60.0% | |
| GGGCCACCGAGTTGCAAAAG+GGG | + | chr5_2:12666357-12666376 | None:intergenic | 60.0% | |
| GGGGCCACCGAGTTGCAAAA+GGG | + | chr5_2:12666358-12666377 | None:intergenic | 60.0% | |
| GACAACCATGCCGGAAACGC+CGG | - | chr5_2:12667135-12667154 | Msa0757710:intron | 60.0% | |
| TATCTCCGGCGTTTCCGGCA+TGG | + | chr5_2:12667143-12667162 | None:intergenic | 60.0% | |
| GGGGGCCACCGAGTTGCAAA+AGG | + | chr5_2:12666359-12666378 | None:intergenic | 65.0% | |
| ! | TAGGGGGCCACCGAGTTGAC+CGG | + | chr5_2:12666395-12666414 | None:intergenic | 65.0% |
| ! | GTTTGTCGGTGGCGACTCGG+CGG | - | chr5_2:12666877-12666896 | Msa0757710:intron | 65.0% |
| CACGGCGGTTTCCAGCACGG+TGG | + | chr5_2:12664555-12664574 | None:intergenic | 70.0% | |
| CGGCACGGCGGTTTCCAGCA+CGG | + | chr5_2:12664558-12664577 | None:intergenic | 70.0% | |
| CGTGCTGGAAACCGCCGTGC+CGG | - | chr5_2:12664556-12664575 | Msa0757710:CDS | 70.0% | |
| AGGGGGTGAAGTTGGGGGGC+TGG | + | chr5_2:12666339-12666358 | None:intergenic | 70.0% | |
| ! | AGGGGGCCACCGAGTTGACC+GGG | + | chr5_2:12666394-12666413 | None:intergenic | 70.0% |
| CTCGGCGGCGACGTTGGAAC+CGG | - | chr5_2:12666892-12666911 | Msa0757710:intron | 70.0% | |
| ! | TGGCGACTCGGCGGCGACGT+TGG | - | chr5_2:12666886-12666905 | Msa0757710:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 12664542 | 12667415 | 12664542 | ID=Msa0757710;Name=Msa0757710 |
| chr5_2 | mRNA | 12664542 | 12667415 | 12664542 | ID=Msa0757710-mRNA-1;Parent=Msa0757710;Name=Msa0757710-mRNA-1;_AED=0.72;_eAED=0.72;_QI=0|0|0|0.16|1|1|6|0|217 |
| chr5_2 | exon | 12667332 | 12667415 | 12667332 | ID=Msa0757710-mRNA-1:exon:5696;Parent=Msa0757710-mRNA-1 |
| chr5_2 | exon | 12666495 | 12666587 | 12666495 | ID=Msa0757710-mRNA-1:exon:5695;Parent=Msa0757710-mRNA-1 |
| chr5_2 | exon | 12666097 | 12666151 | 12666097 | ID=Msa0757710-mRNA-1:exon:5694;Parent=Msa0757710-mRNA-1 |
| chr5_2 | exon | 12665035 | 12665197 | 12665035 | ID=Msa0757710-mRNA-1:exon:5693;Parent=Msa0757710-mRNA-1 |
| chr5_2 | exon | 12664789 | 12664891 | 12664789 | ID=Msa0757710-mRNA-1:exon:5692;Parent=Msa0757710-mRNA-1 |
| chr5_2 | exon | 12664542 | 12664697 | 12664542 | ID=Msa0757710-mRNA-1:exon:5691;Parent=Msa0757710-mRNA-1 |
| chr5_2 | CDS | 12667332 | 12667415 | 12667332 | ID=Msa0757710-mRNA-1:cds;Parent=Msa0757710-mRNA-1 |
| chr5_2 | CDS | 12666495 | 12666587 | 12666495 | ID=Msa0757710-mRNA-1:cds;Parent=Msa0757710-mRNA-1 |
| chr5_2 | CDS | 12666097 | 12666151 | 12666097 | ID=Msa0757710-mRNA-1:cds;Parent=Msa0757710-mRNA-1 |
| chr5_2 | CDS | 12665035 | 12665197 | 12665035 | ID=Msa0757710-mRNA-1:cds;Parent=Msa0757710-mRNA-1 |
| chr5_2 | CDS | 12664789 | 12664891 | 12664789 | ID=Msa0757710-mRNA-1:cds;Parent=Msa0757710-mRNA-1 |
| chr5_2 | CDS | 12664542 | 12664697 | 12664542 | ID=Msa0757710-mRNA-1:cds;Parent=Msa0757710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
