AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0758500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0758500 MtrunA17_Chr6g0460371 64.583 192 56 5 213 396 110 297 9.34e-68 231
Msa0758500 MtrunA17_Chr2g0328811 58.621 145 51 3 349 493 79 214 6.10e-43 157
Msa0758500 MtrunA17_Chr5g0433851 88.158 76 9 0 1 76 10 85 3.33e-38 144
Msa0758500 MtrunA17_Chr7g0258001 54.167 144 51 6 349 489 79 210 4.50e-37 140
Msa0758500 MtrunA17_Chr1g0173711 54.861 144 50 6 349 489 79 210 9.08e-37 140
Msa0758500 MtrunA17_Chr3g0109841 97.101 69 2 0 441 509 198 266 1.01e-35 142
Msa0758500 MtrunA17_Chr3g0109791 76.000 75 17 1 2 76 26 99 1.69e-31 124
Msa0758500 MtrunA17_Chr5g0433761 76.812 69 16 0 441 509 195 263 1.46e-25 111
Msa0758500 MtrunA17_Chr6g0481061 70.588 68 20 0 9 76 32 99 1.28e-23 103
Msa0758500 MtrunA17_Chr7g0276421 71.429 63 18 0 14 76 6 68 4.53e-22 100
Msa0758500 MtrunA17_Chr6g0481131 60.870 69 27 0 441 509 197 265 1.67e-20 95.5
Msa0758500 MtrunA17_Chr6g0481171 59.420 69 28 0 441 509 69 137 3.94e-20 94.4
Msa0758500 MtrunA17_Chr1g0181771 59.677 62 25 0 15 76 28 89 1.56e-17 83.2
Msa0758500 MtrunA17_Chr4g0034381 83.333 42 7 0 105 146 139 180 4.59e-16 78.2
Msa0758500 MtrunA17_Chr8g0348391 64.815 54 19 0 23 76 53 106 5.31e-16 79.3
Msa0758500 MtrunA17_Chr6g0469431 64.815 54 19 0 23 76 39 92 6.79e-16 77.0
Msa0758500 MtrunA17_Chr4g0034511 32.955 88 53 1 337 424 87 168 7.61e-13 70.1
Msa0758500 MtrunA17_Chr7g0269581 49.275 69 35 0 441 509 191 259 2.14e-12 69.7
Msa0758500 MtrunA17_Chr1g0195241 40.659 91 46 1 427 509 154 244 1.12e-11 67.4
Msa0758500 MtrunA17_Chr4g0070011 43.478 69 39 0 441 509 191 259 1.26e-11 67.4
Msa0758500 MtrunA17_Chr1g0154581 41.096 73 43 0 350 422 94 166 2.02e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0758500 AT1G17760.1 48.223 197 80 5 213 396 110 297 3.32e-49 181
Msa0758500 AT3G57650.1 55.245 143 45 6 352 489 81 209 2.55e-38 144
Msa0758500 AT1G51260.1 51.049 143 59 5 348 489 78 210 1.04e-34 134
Msa0758500 AT5G17300.1 75.385 65 16 0 12 76 33 97 8.57e-25 106
Msa0758500 AT5G37260.1 73.016 63 17 0 14 76 16 78 5.82e-23 99.4
Msa0758500 AT2G46830.1 68.182 66 21 0 11 76 1 66 1.24e-21 99.0
Msa0758500 AT1G01060.4 66.667 66 22 0 11 76 1 66 1.85e-21 98.6
Msa0758500 AT1G01060.8 66.667 66 22 0 11 76 1 66 1.89e-21 98.6
Msa0758500 AT1G01060.2 66.667 66 22 0 11 76 1 66 1.89e-21 98.6
Msa0758500 AT1G01060.3 66.667 66 22 0 11 76 1 66 1.89e-21 98.6
Msa0758500 AT1G01060.1 66.667 66 22 0 11 76 1 66 1.89e-21 98.6
Msa0758500 AT1G01060.7 66.667 66 22 0 11 76 1 66 1.89e-21 98.6
Msa0758500 AT1G18330.1 72.727 55 15 0 22 76 38 92 1.89e-20 93.2
Msa0758500 AT3G10113.1 72.727 55 15 0 22 76 53 107 1.89e-20 92.8
Msa0758500 AT5G37180.1 41.727 139 45 4 406 509 118 255 2.56e-20 95.1
Msa0758500 AT1G18330.2 72.727 55 15 0 22 76 64 118 2.88e-20 93.2
Msa0758500 AT5G37180.2 59.701 67 27 0 443 509 1 67 4.88e-19 90.9
Msa0758500 AT3G09600.4 66.667 54 18 0 23 76 32 85 1.38e-16 80.5
Msa0758500 AT3G09600.2 66.667 54 18 0 23 76 32 85 1.39e-16 80.5
Msa0758500 AT3G09600.6 66.667 54 18 0 23 76 32 85 1.39e-16 80.5
Msa0758500 AT3G09600.1 66.667 54 18 0 23 76 32 85 1.68e-16 80.5
Msa0758500 AT3G09600.7 66.667 54 18 0 23 76 32 85 1.68e-16 80.5
Msa0758500 AT5G52660.1 62.963 54 20 0 23 76 61 114 6.24e-15 76.3
Msa0758500 AT5G52660.2 62.963 54 20 0 23 76 61 114 6.24e-15 76.6
Msa0758500 AT4G01280.1 64.815 54 19 0 23 76 48 101 8.20e-15 75.9
Msa0758500 AT4G01280.2 64.815 54 19 0 23 76 48 101 8.46e-15 75.5
Msa0758500 AT1G01520.2 62.963 54 20 0 23 76 50 103 1.12e-14 74.7
Msa0758500 AT1G01520.4 62.963 54 20 0 23 76 50 103 1.12e-14 74.7
Msa0758500 AT1G01520.3 62.963 54 20 0 23 76 50 103 1.28e-14 74.7
Msa0758500 AT1G01520.1 62.963 54 20 0 23 76 50 103 1.30e-14 74.7
Msa0758500 AT5G02840.4 58.333 60 25 0 17 76 31 90 1.50e-14 74.3
Msa0758500 AT5G02840.3 62.963 54 20 0 23 76 37 90 1.65e-14 74.3
Msa0758500 AT5G02840.1 62.963 54 20 0 23 76 37 90 1.87e-14 74.3
Msa0758500 AT5G02840.2 62.963 54 20 0 23 76 37 90 1.87e-14 74.3
Msa0758500 AT1G73370.3 49.412 85 35 1 433 509 181 265 1.89e-14 77.0
Msa0758500 AT1G73370.1 49.412 85 35 1 433 509 181 265 1.89e-14 77.0
Msa0758500 AT1G73370.2 49.412 85 35 1 433 509 137 221 1.90e-14 77.0
Msa0758500 AT5G02840.5 58.333 60 25 0 17 76 31 90 2.41e-14 73.9
Msa0758500 AT4G34360.1 71.429 42 12 0 105 146 134 175 9.59e-14 71.6
Msa0758500 AT5G49190.3 45.588 68 37 0 442 509 125 192 2.08e-12 70.1
Msa0758500 AT5G49190.1 45.588 68 37 0 442 509 191 258 2.33e-12 70.1
Msa0758500 AT5G49190.2 45.588 68 37 0 442 509 181 248 2.36e-12 70.1
Msa0758500 AT3G18850.5 35.227 88 51 1 337 424 58 139 1.33e-11 66.6
Msa0758500 AT4G02280.1 44.118 68 38 0 442 509 194 261 1.35e-11 67.8
Msa0758500 AT3G18850.1 35.227 88 51 1 337 424 81 162 2.47e-11 65.9
Msa0758500 AT3G18850.4 35.227 88 51 1 337 424 81 162 2.47e-11 65.9
Msa0758500 AT3G18850.2 35.227 88 51 1 337 424 81 162 2.47e-11 65.9
Msa0758500 AT3G18850.3 35.227 88 51 1 337 424 81 162 2.47e-11 65.9

Find 165 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATTAGGGTTTGATATTT+TGG 0.093832 5_2:-13795950 Msa0758500:five_prime_UTR
GAATAGAAACTATTTCTTTA+AGG 0.117142 5_2:+13788358 None:intergenic
GTTAATAAAAGTCACATATT+TGG 0.150657 5_2:+13788468 None:intergenic
AAAATTGTTTCCGTGATATT+AGG 0.163292 5_2:-13795964 Msa0758500:five_prime_UTR
TTCTCTATCCATGGTTATTT+TGG 0.163461 5_2:-13788937 Msa0758500:three_prime_UTR
GCCCTCGCACTATTAAATTT+TGG 0.193492 5_2:+13792516 None:intergenic
AAGGATGACTTTAGAAGATT+TGG 0.210702 5_2:-13788243 Msa0758500:three_prime_UTR
CACTCTAATTCTTGAACTTT+AGG 0.233684 5_2:+13788446 None:intergenic
GATACTTTCCTGAATAAATT+AGG 0.247966 5_2:-13793864 Msa0758500:CDS
TGCTAACACCTAATTTATTC+AGG 0.253669 5_2:+13793856 None:intergenic
AGTGACATTGATTGGCTTAT+TGG 0.258738 5_2:-13792084 Msa0758500:CDS
CAGAATTAATTCTACACATT+TGG 0.260801 5_2:+13788797 None:intergenic
GCAATATCTATGCAGGTTAT+AGG 0.262706 5_2:-13791733 Msa0758500:intron
CAGCTTCTTCAGAAAGCTTA+TGG 0.264058 5_2:+13794198 None:intergenic
AATTTGCAAGTGAAAATTTC+AGG 0.264205 5_2:-13792141 Msa0758500:CDS
TTTAAATTCTTTCTTCATAA+TGG 0.266444 5_2:+13791863 None:intergenic
TAAAGTCGACATTATGAAAA+AGG 0.281405 5_2:-13788518 Msa0758500:three_prime_UTR
ACTTATTTCTAGAAAGAAAC+TGG 0.284035 5_2:-13791687 Msa0758500:CDS
ATAATATATTCTCTTGGTTA+TGG 0.286140 5_2:-13793462 Msa0758500:CDS
ACATTTATCTCGATAACTTT+TGG 0.297735 5_2:-13794034 Msa0758500:CDS
GGGTGAGAGAAGAGGGAAAC+GGG 0.297757 5_2:-13796315 Msa0758500:five_prime_UTR
TGATAGATTGATCTTTGATT+TGG 0.314068 5_2:-13788108 Msa0758500:three_prime_UTR
TCATCAGCGAAAAGAGGTTT+TGG 0.316197 5_2:-13794231 Msa0758500:CDS
CCCATCACTTTGAACAACTT+TGG 0.319736 5_2:-13792697 Msa0758500:CDS
GCACAAGTTAGAATCAATTA+TGG 0.323401 5_2:+13788736 None:intergenic
TTCTCCATGGTCACTGGGTC+TGG 0.335878 5_2:+13789000 None:intergenic
CTACATTGAAAGGTGTTCAT+AGG 0.336704 5_2:-13794075 Msa0758500:CDS
TTTGGTCAAGCAGATGTTCT+TGG 0.337396 5_2:-13788919 Msa0758500:three_prime_UTR
CAAGTAACATTCCTAAACTT+TGG 0.348603 5_2:-13788877 Msa0758500:three_prime_UTR
AAATTGTTTCCGTGATATTA+GGG 0.354965 5_2:-13795963 Msa0758500:five_prime_UTR
CAGGATATATTACCAACTTC+TGG 0.358258 5_2:+13792642 None:intergenic
TCATGAAAAGTAAGTATCTA+AGG 0.362124 5_2:-13788262 Msa0758500:three_prime_UTR
TTGGCTTATTGGATGGGTCT+TGG 0.364550 5_2:-13792073 Msa0758500:CDS
ATCTGATGTGTTTCTTCTTG+TGG 0.368845 5_2:+13792764 None:intergenic
TATTGGATGGGTCTTGGCTC+AGG 0.379258 5_2:-13792067 Msa0758500:intron
AGAACTGTTGATGTCTTATC+TGG 0.386030 5_2:-13789640 Msa0758500:intron
AAGAGGGAAACGGGAGAAAG+AGG 0.391367 5_2:-13796306 Msa0758500:five_prime_UTR
ATCACAGGAGTGACATTGAT+TGG 0.396953 5_2:-13792092 Msa0758500:CDS
AGCCTTTCTAAAGTCATTGC+CGG 0.398907 5_2:-13792887 Msa0758500:intron
TGTATAACTTTAAAGCTTCA+AGG 0.400585 5_2:+13795163 None:intergenic
AGGAAGAAGGGTGAGAGAAG+AGG 0.400716 5_2:-13796323 Msa0758500:five_prime_UTR
GGAAGAAGGGTGAGAGAAGA+GGG 0.403349 5_2:-13796322 Msa0758500:five_prime_UTR
AAGTAACATTCCTAAACTTT+GGG 0.406887 5_2:-13788876 Msa0758500:three_prime_UTR
TCCAAAGTTGTTCAAAGTGA+TGG 0.408449 5_2:+13792696 None:intergenic
GGAACAGAAATTTGCCTTGT+GGG 0.409718 5_2:+13792422 None:intergenic
AGCTCAACTACCCAAAGTTT+AGG 0.411617 5_2:+13788866 None:intergenic
GTTACTTGTCCGTCGATGTC+TGG 0.414111 5_2:+13788892 None:intergenic
ATGCTTGCTGTACCACCAAC+TGG 0.416506 5_2:-13792447 Msa0758500:CDS
ATTGGAACGGGAGAGGAAGA+AGG 0.426163 5_2:-13796336 Msa0758500:five_prime_UTR
GTAAGGTTGCGGTTCTGAAT+AGG 0.429352 5_2:-13796160 Msa0758500:five_prime_UTR
AAACGGGAGAAAGAGGGAAC+GGG 0.431459 5_2:-13796299 Msa0758500:five_prime_UTR
TGGAAATTACTATGCCTTGA+AGG 0.432083 5_2:-13795377 Msa0758500:intron
TAATTGATTCTAACTTGTGC+TGG 0.435668 5_2:-13788733 Msa0758500:three_prime_UTR
TTCATTATAATATATTCTCT+TGG 0.436209 5_2:-13793468 Msa0758500:CDS
GATGTGTCTGACATACATTT+TGG 0.437370 5_2:+13788073 None:intergenic
CGGGAGAAAGAAGAGGGAAC+GGG 0.437959 5_2:-13796280 Msa0758500:five_prime_UTR
CTTGGTTCAAAATCATCATA+AGG 0.439067 5_2:+13789190 None:intergenic
GCAGCTTTGCAACTGAGCTC+AGG 0.439257 5_2:+13789266 None:intergenic
GGATTTGAAATCAAAGCTAT+AGG 0.445820 5_2:+13793914 None:intergenic
TAGATTGATCTTTGATTTGG+AGG 0.445997 5_2:-13788105 Msa0758500:three_prime_UTR
ATCACAACATTGAATATTGT+GGG 0.458572 5_2:+13788961 None:intergenic
ATACCACAAGGCAGACCTCC+TGG 0.463458 5_2:+13793405 None:intergenic
TTCATTCATCAAAGGTGGTA+AGG 0.470133 5_2:-13796177 Msa0758500:five_prime_UTR
GTTTCAGACTTCGGATTCCA+TGG 0.472468 5_2:+13794115 None:intergenic
TGATACAGCAGGTGCTGCTC+AGG 0.476534 5_2:-13793820 Msa0758500:intron
GTTTGTTCTTCATTCATCAA+AGG 0.481481 5_2:-13796185 Msa0758500:five_prime_UTR
AATTCATAGGTTTAAGCAGT+GGG 0.481485 5_2:-13789099 Msa0758500:intron
AGACATATAATTGCAAGGTT+AGG 0.481535 5_2:-13788211 Msa0758500:three_prime_UTR
TCACAGCGCACGGGTTGCCT+TGG 0.481689 5_2:-13791897 Msa0758500:intron
TACATTGAAAGGTGTTCATA+GGG 0.482070 5_2:-13794074 Msa0758500:CDS
AGGGTGAGAGAAGAGGGAAA+CGG 0.485711 5_2:-13796316 Msa0758500:five_prime_UTR
GATCACAACATTGAATATTG+TGG 0.486777 5_2:+13788960 None:intergenic
CATTGATTGGCTTATTGGAT+GGG 0.486891 5_2:-13792079 Msa0758500:CDS
AATGAACGTGTACACAAATC+AGG 0.489813 5_2:-13788549 Msa0758500:three_prime_UTR
AAGTATTCATCAGCGAAAAG+AGG 0.492539 5_2:-13794237 Msa0758500:CDS
AATTGCAAGGTTAGGACTGC+TGG 0.493967 5_2:-13788203 Msa0758500:three_prime_UTR
GGAAGATTAAGTTAAAATTG+AGG 0.494193 5_2:-13795928 Msa0758500:intron
AGCATCAGGCCCTGTGTGGA+TGG 0.495690 5_2:-13792917 Msa0758500:CDS
CCAAAGTTGTTCAAAGTGAT+GGG 0.495885 5_2:+13792697 None:intergenic
TTGGAACGGGAGAGGAAGAA+GGG 0.500051 5_2:-13796335 Msa0758500:five_prime_UTR
TGAATGTAAAGTGATATGTT+TGG 0.503494 5_2:+13788653 None:intergenic
CATCAACAGTTCTATCATTG+AGG 0.503528 5_2:+13789650 None:intergenic
TAAAGTTATACAGTCGAGCC+TGG 0.508531 5_2:-13795152 Msa0758500:CDS
GAGGGAACGGGAGAAAGAAG+AGG 0.509294 5_2:-13796287 Msa0758500:five_prime_UTR
GGAGAAAGAAGAAAGAAGAA+TGG 0.510652 5_2:-13796259 Msa0758500:five_prime_UTR
GAATGAAGGGAAAACCTTCA+AGG 0.514108 5_2:+13795363 None:intergenic
TAAAGATGAATCATCATTGA+AGG 0.515984 5_2:-13791662 Msa0758500:intron
ACGAGAGATTGGAACGGGAG+AGG 0.516906 5_2:-13796343 Msa0758500:five_prime_UTR
GGATCAGACATAATAGCATC+AGG 0.520650 5_2:-13792931 Msa0758500:CDS
ACGTTCATTTAGCATGTGCT+TGG 0.521491 5_2:+13788563 None:intergenic
ACGGGAGAAAGAAGAGGGAA+CGG 0.524031 5_2:-13796281 Msa0758500:five_prime_UTR
ATAATGTCGACTTTATATGT+TGG 0.527989 5_2:+13788526 None:intergenic
TACCACAAGGCAGACCTCCT+GGG 0.528966 5_2:+13793406 None:intergenic
GCCTTGTGGGATCCAGTTGG+TGG 0.529757 5_2:+13792435 None:intergenic
GTTGTGATCTTCTCTATCCA+TGG 0.530423 5_2:-13788946 Msa0758500:three_prime_UTR
AAAACTTCTCCATGGTCACT+GGG 0.530748 5_2:+13788995 None:intergenic
GAGAAAGAAGAAAGAAGAAT+GGG 0.530801 5_2:-13796258 Msa0758500:five_prime_UTR
AGAATTAGAGTGGTTTAGTG+AGG 0.535375 5_2:-13788435 Msa0758500:three_prime_UTR
GAAAATGTTGATGATACAGC+AGG 0.537015 5_2:-13793831 Msa0758500:CDS
CATCAAAGGTGGTAAGGTTG+CGG 0.538387 5_2:-13796171 Msa0758500:five_prime_UTR
TTGGACATAGTTTCAGACTT+CGG 0.539407 5_2:+13794106 None:intergenic
ACATTGATTGGCTTATTGGA+TGG 0.541072 5_2:-13792080 Msa0758500:CDS
CACTTCTGATATGCAATCAC+AGG 0.541763 5_2:-13792107 Msa0758500:CDS
TTGATGAATGAAGAACAAAC+AGG 0.541873 5_2:+13796188 None:intergenic
AACCGGCAATGACTTTAGAA+AGG 0.541989 5_2:+13792885 None:intergenic
AAGTTCTGTTAGCCAGAAGT+TGG 0.544913 5_2:-13792654 Msa0758500:intron
CTAAAGTTCAAGAATTAGAG+TGG 0.545919 5_2:-13788445 Msa0758500:three_prime_UTR
CTCAGTTGCAAAGCTGCAGA+TGG 0.547696 5_2:-13789260 Msa0758500:CDS
TATCTATGCAGGTTATAGGT+TGG 0.550771 5_2:-13791729 Msa0758500:intron
TCATCATAAGGAGTATCCAC+TGG 0.551333 5_2:+13789202 None:intergenic
AACCAAAATTTAATAGTGCG+AGG 0.552564 5_2:-13792518 Msa0758500:CDS
AGAGGGAAACGGGAGAAAGA+GGG 0.553932 5_2:-13796305 Msa0758500:five_prime_UTR
GAGAGAAGCTGAAAATCAGA+TGG 0.554106 5_2:+13796234 None:intergenic
TTTCGTTGGTCACAGCGCAC+GGG 0.554146 5_2:-13791906 Msa0758500:intron
CAGCTTTGCAACTGAGCTCA+GGG 0.554908 5_2:+13789267 None:intergenic
GAAACGGGAGAAAGAGGGAA+CGG 0.556168 5_2:-13796300 Msa0758500:five_prime_UTR
ACCCCAGGAGGTCTGCCTTG+TGG 0.558598 5_2:-13793408 Msa0758500:intron
CTTATTTCTAGAAAGAAACT+GGG 0.562750 5_2:-13791686 Msa0758500:CDS
AAGGTTAGGACTGCTGGCGA+AGG 0.562911 5_2:-13788197 Msa0758500:three_prime_UTR
AACATTATTAACATTTGCAG+AGG 0.563575 5_2:+13792401 None:intergenic
TCACAAAACAGAGAGAAAAG+TGG 0.563691 5_2:-13795209 Msa0758500:CDS
CGAGGGCAGTATACAGAGAA+CGG 0.564609 5_2:-13792500 Msa0758500:CDS
AAGGTCATGTCTACATTGAA+AGG 0.565200 5_2:-13794085 Msa0758500:CDS
TTTCAGACTTCGGATTCCAT+GGG 0.572108 5_2:+13794116 None:intergenic
TGTTCTTCATTCATCAAAGG+TGG 0.573286 5_2:-13796182 Msa0758500:five_prime_UTR
AATATCAAACCCTAATATCA+CGG 0.575905 5_2:+13795954 None:intergenic
ACCAAAATTTAATAGTGCGA+GGG 0.577057 5_2:-13792517 Msa0758500:CDS
TTTCAATGTAGACATGACCT+TGG 0.582305 5_2:+13794087 None:intergenic
AGGTTATAGGTTGGTCAATG+TGG 0.584576 5_2:-13791720 Msa0758500:CDS
CGTAGACCGCGACTTACAAG+AGG 0.586650 5_2:-13788132 Msa0758500:three_prime_UTR
GTGAGGTTATATTCATGCTG+AGG 0.588002 5_2:-13788418 Msa0758500:three_prime_UTR
TATAGGCTAGTGGTGACCCA+TGG 0.588816 5_2:-13794132 Msa0758500:intron
AGTTCCAGACCCAGTGACCA+TGG 0.590770 5_2:-13789004 Msa0758500:exon
AGGGAACGGGAGAAAGAAGA+GGG 0.590835 5_2:-13796286 Msa0758500:five_prime_UTR
ATCAACAGTTCTATCATTGA+GGG 0.591263 5_2:+13789651 None:intergenic
AGCTGCTTCAGCATCATCAA+AGG 0.591586 5_2:-13796125 Msa0758500:intron
AGTTGTTCAAAGTGATGGGT+AGG 0.596093 5_2:+13792701 None:intergenic
AGTGGATGGGGAGATACTGC+AGG 0.599037 5_2:-13789068 Msa0758500:CDS
AGATACTGCAGGAAGAGTGA+AGG 0.602197 5_2:-13789057 Msa0758500:CDS
CTGCTTGACCAAAATAACCA+TGG 0.605295 5_2:+13788929 None:intergenic
TTGTGAGGAAAGTCTATCAG+AGG 0.607948 5_2:-13792736 Msa0758500:CDS
CTTGGCTTGCCAGACATCGA+CGG 0.607998 5_2:-13788901 Msa0758500:three_prime_UTR
AGGTTAGGACTGCTGGCGAA+GGG 0.609643 5_2:-13788196 Msa0758500:three_prime_UTR
GAAGTCTGAAACTATGTCCA+AGG 0.615623 5_2:-13794104 Msa0758500:CDS
TTTGCCTTGTGGGATCCAGT+TGG 0.616706 5_2:+13792432 None:intergenic
TAATGGCCATCGTGCTACCA+AGG 0.618127 5_2:+13791880 None:intergenic
TATCCACTGGAAGTGCTGAA+AGG 0.620301 5_2:+13789215 None:intergenic
ACACAAGACATATAATTGCA+AGG 0.621590 5_2:-13788216 Msa0758500:three_prime_UTR
GCTATGTACTCCATCCACAC+AGG 0.627247 5_2:+13792907 None:intergenic
AGGAACAGAAATTTGCCTTG+TGG 0.630281 5_2:+13792421 None:intergenic
CACATCAGATGACTGTTGTG+AGG 0.630283 5_2:-13792751 Msa0758500:CDS
TAATTCATAGGTTTAAGCAG+TGG 0.631942 5_2:-13789100 Msa0758500:intron
CTATGTACTCCATCCACACA+GGG 0.637483 5_2:+13792908 None:intergenic
AACAGTTCTATCATTGAGGG+AGG 0.642694 5_2:+13789654 None:intergenic
ACCACCAACTGGATCCCACA+AGG 0.642757 5_2:-13792436 Msa0758500:CDS
TAATAGCATCAGGCCCTGTG+TGG 0.645875 5_2:-13792921 Msa0758500:CDS
GCTGCAGATGGCACTAACAG+TGG 0.655252 5_2:-13789248 Msa0758500:CDS
ATTCCTTTCAGCACTTCCAG+TGG 0.655307 5_2:-13789218 Msa0758500:CDS
ACCACAAGGCAGACCTCCTG+GGG 0.657543 5_2:+13793407 None:intergenic
TATCACCCTCTTGTAAGTCG+CGG 0.658226 5_2:+13788126 None:intergenic
TGTGAGGAAAGTCTATCAGA+GGG 0.681127 5_2:-13792735 Msa0758500:CDS
ATTCATAGGTTTAAGCAGTG+GGG 0.687027 5_2:-13789098 Msa0758500:intron
GGGTTGCCTTGGTAGCACGA+TGG 0.694385 5_2:-13791886 Msa0758500:CDS
ATGTATGTCAGACACATCCG+CGG 0.706053 5_2:-13788068 Msa0758500:three_prime_UTR
GTAGACCGCGACTTACAAGA+GGG 0.725543 5_2:-13788131 Msa0758500:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTTTCACTTAATATA+TGG + chr5_2:13789510-13789529 None:intergenic 10.0%
!!! TTGAAATATTTTTAAACTTA+AGG - chr5_2:13793762-13793781 Msa0758500:intron 10.0%
!!! TGAAATATTTTTAAACTTAA+GGG - chr5_2:13793763-13793782 Msa0758500:intron 10.0%
!! TTTCTTTAATTATTAAGTTT+AGG - chr5_2:13794264-13794283 Msa0758500:intron 10.0%
!!! TTAATTGTATATTTGCTATT+TGG - chr5_2:13788928-13788947 Msa0758500:three_prime_UTR 15.0%
!! AAATTTATGTATACTTCTAT+AGG - chr5_2:13789151-13789170 Msa0758500:intron 15.0%
!! CATTAATAAATCAGAAAATA+TGG - chr5_2:13789359-13789378 Msa0758500:intron 15.0%
!! TTCATTATAATATATTCTCT+TGG - chr5_2:13790933-13790952 Msa0758500:intron 15.0%
!! AACTAAAATACAAAACTAAT+AGG + chr5_2:13791201-13791220 None:intergenic 15.0%
!!! ATTAAATTTTGGTTGATATT+CGG + chr5_2:13791877-13791896 None:intergenic 15.0%
!!! TAAAATTTTAAGAACTTCAA+GGG + chr5_2:13792039-13792058 None:intergenic 15.0%
!!! TTAAAATTTTAAGAACTTCA+AGG + chr5_2:13792040-13792059 None:intergenic 15.0%
!! TAATATTACTTCAAATTACA+AGG - chr5_2:13792427-13792446 Msa0758500:CDS 15.0%
!! AATATTACTTCAAATTACAA+GGG - chr5_2:13792428-13792447 Msa0758500:CDS 15.0%
!! TTTAAATTCTTTCTTCATAA+TGG + chr5_2:13792541-13792560 None:intergenic 15.0%
!!! TTATTAAGTTTAGGATTTTT+TGG - chr5_2:13794273-13794292 Msa0758500:intron 15.0%
!! AAATTTATATATCAGACTAA+AGG + chr5_2:13794481-13794500 None:intergenic 15.0%
!! TTAGTCTGATATATAAATTT+AGG - chr5_2:13794481-13794500 Msa0758500:intron 15.0%
!! TTTATATTCATTTATATGCA+CGG - chr5_2:13794520-13794539 Msa0758500:intron 15.0%
!! TTAAACCTATGAATTAAAAT+AGG + chr5_2:13795297-13795316 None:intergenic 15.0%
!!! ATTTCATTTTTGATCAATTG+AGG - chr5_2:13788358-13788377 Msa0758500:three_prime_UTR 20.0%
!!! TTTTCAGGAATTTTTTGTTT+TGG - chr5_2:13788388-13788407 Msa0758500:three_prime_UTR 20.0%
!!! ATATTAGGGTTTGATATTTT+GGG - chr5_2:13788452-13788471 Msa0758500:three_prime_UTR 20.0%
!! TTACATGTTAAAATTGTTGT+AGG - chr5_2:13788669-13788688 Msa0758500:three_prime_UTR 20.0%
!!! AATTTTGAATTTTCAGATCT+TGG - chr5_2:13789293-13789312 Msa0758500:intron 20.0%
!! TTCACTTAATATATGGTTTA+TGG + chr5_2:13789503-13789522 None:intergenic 20.0%
!! AAGTGAAAATTTATGATGAA+TGG - chr5_2:13789516-13789535 Msa0758500:intron 20.0%
!! TAATAATTCTTGTGGATTTA+AGG + chr5_2:13789971-13789990 None:intergenic 20.0%
!!! TGCTATATGACTATTTTTAT+AGG - chr5_2:13790252-13790271 Msa0758500:intron 20.0%
!! AAAACCATATACTATAATTG+GGG + chr5_2:13790749-13790768 None:intergenic 20.0%
!! GAAAACCATATACTATAATT+GGG + chr5_2:13790750-13790769 None:intergenic 20.0%
!! AGAAAACCATATACTATAAT+TGG + chr5_2:13790751-13790770 None:intergenic 20.0%
!! CAAAAAATATTTATTTGGCT+TGG - chr5_2:13790870-13790889 Msa0758500:intron 20.0%
!! ATAATATATTCTCTTGGTTA+TGG - chr5_2:13790939-13790958 Msa0758500:intron 20.0%
!!! TCAGTAACTTTCAATTTTTT+TGG - chr5_2:13791313-13791332 Msa0758500:intron 20.0%
!!! GTATCACTTTTCAAAATTTT+GGG - chr5_2:13791589-13791608 Msa0758500:intron 20.0%
!!! AGTTTTTTGATGAAATTGAT+TGG - chr5_2:13791928-13791947 Msa0758500:intron 20.0%
!!! GTTCTTAAAATTTTAAGTTC+TGG - chr5_2:13792044-13792063 Msa0758500:intron 20.0%
!!! CAAAGTTAATATAGTTTGTT+AGG - chr5_2:13792190-13792209 Msa0758500:intron 20.0%
!! TGCTCAAAATAAATTAGTAT+AGG - chr5_2:13792227-13792246 Msa0758500:intron 20.0%
!!! CAAAGAATTTTGCATATAAT+AGG + chr5_2:13792366-13792385 None:intergenic 20.0%
!!! ATATTCTATTTCTTTTTCGT+TGG - chr5_2:13792481-13792500 Msa0758500:CDS 20.0%
!!! GTAAATTTAGAATTGCATTA+AGG - chr5_2:13792605-13792624 Msa0758500:intron 20.0%
!! TACTAAGTAAAACTGTTAAA+AGG + chr5_2:13793311-13793330 None:intergenic 20.0%
!! AAATGAAAAGAACTCATTAT+AGG + chr5_2:13793794-13793813 None:intergenic 20.0%
!!! TTATGTAGTAATTTCGTTTT+TGG - chr5_2:13793981-13794000 Msa0758500:intron 20.0%
!! TACATTGAATTATATATGCA+AGG + chr5_2:13794010-13794029 None:intergenic 20.0%
!! GCATATATAATTCAATGTAA+AGG - chr5_2:13794011-13794030 Msa0758500:intron 20.0%
!!! ACTTGATATCAATCTTATTT+TGG - chr5_2:13794139-13794158 Msa0758500:intron 20.0%
!!! CTTGATATCAATCTTATTTT+GGG - chr5_2:13794140-13794159 Msa0758500:intron 20.0%
!! ACCAAATAAATAAACCATAT+TGG + chr5_2:13794424-13794443 None:intergenic 20.0%
!! AGGTTTATATAAAGAGAAAT+TGG + chr5_2:13794461-13794480 None:intergenic 20.0%
!! TTATATTCATTTATATGCAC+GGG - chr5_2:13794521-13794540 Msa0758500:intron 20.0%
!! TCATTTGTCTCAATATAATT+AGG - chr5_2:13794639-13794658 Msa0758500:intron 20.0%
!! AAAATTCATGTCAAAAGTTA+AGG + chr5_2:13794680-13794699 None:intergenic 20.0%
!!! ATGAATTTTGACAATTGATT+TGG - chr5_2:13794691-13794710 Msa0758500:intron 20.0%
!!! TGAATTTTGACAATTGATTT+GGG - chr5_2:13794692-13794711 Msa0758500:intron 20.0%
!! GTAACTTATGTTAAATCTTT+AGG - chr5_2:13794959-13794978 Msa0758500:intron 20.0%
!!! ATTTGAGATCATATCTTTAA+AGG - chr5_2:13795003-13795022 Msa0758500:intron 20.0%
!!! ACAATCCTATTTTAATTCAT+AGG - chr5_2:13795289-13795308 Msa0758500:intron 20.0%
!! GTTAATAAAAGTCACATATT+TGG + chr5_2:13795936-13795955 None:intergenic 20.0%
!!! GAATAGAAACTATTTCTTTA+AGG + chr5_2:13796046-13796065 None:intergenic 20.0%
!! ATGCTATATGAAATCAAAAA+TGG + chr5_2:13796094-13796113 None:intergenic 20.0%
!!! ACTTTTTTGGATATTTGATT+TGG + chr5_2:13796120-13796139 None:intergenic 20.0%
! TTATATAAGCATGCATGTTT+AGG - chr5_2:13788312-13788331 Msa0758500:three_prime_UTR 25.0%
! AAAATTGTTTCCGTGATATT+AGG - chr5_2:13788437-13788456 Msa0758500:three_prime_UTR 25.0%
! AAATTGTTTCCGTGATATTA+GGG - chr5_2:13788438-13788457 Msa0758500:three_prime_UTR 25.0%
! AATATCAAACCCTAATATCA+CGG + chr5_2:13788450-13788469 None:intergenic 25.0%
!! GATATTAGGGTTTGATATTT+TGG - chr5_2:13788451-13788470 Msa0758500:three_prime_UTR 25.0%
! GGAAGATTAAGTTAAAATTG+AGG - chr5_2:13788473-13788492 Msa0758500:three_prime_UTR 25.0%
! ACAGAAATTGAATTGTTTAG+AGG - chr5_2:13788743-13788762 Msa0758500:three_prime_UTR 25.0%
!!! TTAAGCTGTTTTGAACAAAA+TGG - chr5_2:13788780-13788799 Msa0758500:three_prime_UTR 25.0%
! CAGATAAGATTAAGAATGAA+GGG + chr5_2:13789054-13789073 None:intergenic 25.0%
! ACAGATAAGATTAAGAATGA+AGG + chr5_2:13789055-13789074 None:intergenic 25.0%
!!! TGTATAACTTTAAAGCTTCA+AGG + chr5_2:13789241-13789260 None:intergenic 25.0%
!! GAAAATATGGTCTAAGTTTT+TGG - chr5_2:13789372-13789391 Msa0758500:intron 25.0%
!!! ATTTTCAAGTTTAAACCTCA+AGG + chr5_2:13789568-13789587 None:intergenic 25.0%
!! AACTCCTATATCATGAATTT+TGG + chr5_2:13789772-13789791 None:intergenic 25.0%
!! AGAAAGCATAATAATTCTTG+TGG + chr5_2:13789979-13789998 None:intergenic 25.0%
!! ACATTTATCTCGATAACTTT+TGG - chr5_2:13790367-13790386 Msa0758500:intron 25.0%
! GATACTTTCCTGAATAAATT+AGG - chr5_2:13790537-13790556 Msa0758500:intron 25.0%
! AAAATGTATGGAGCTAATTA+CGG + chr5_2:13790680-13790699 None:intergenic 25.0%
! AAACCATATACTATAATTGG+GGG + chr5_2:13790748-13790767 None:intergenic 25.0%
! AGCATTAGTAAATTAGTCAA+TGG + chr5_2:13790787-13790806 None:intergenic 25.0%
!!! GTTTTATTCTTCTTGCTTAT+AGG - chr5_2:13791056-13791075 Msa0758500:intron 25.0%
! TTACATTCGTTTCATTAGAA+AGG - chr5_2:13791084-13791103 Msa0758500:intron 25.0%
! TAGAAAGGTTAATGATAAGA+AGG - chr5_2:13791099-13791118 Msa0758500:intron 25.0%
! AGAAAGGTTAATGATAAGAA+GGG - chr5_2:13791100-13791119 Msa0758500:intron 25.0%
! ATACAAAACTAATAGGACAA+TGG + chr5_2:13791194-13791213 None:intergenic 25.0%
!! ACCTTTTTATGAGATGATAA+TGG - chr5_2:13791240-13791259 Msa0758500:intron 25.0%
! TCCATTATCATCTCATAAAA+AGG + chr5_2:13791244-13791263 None:intergenic 25.0%
! CATACAAAAGATTAACTAAC+CGG + chr5_2:13791536-13791555 None:intergenic 25.0%
!! GTTATGCAATTCTTATTTCT+TGG - chr5_2:13791555-13791574 Msa0758500:intron 25.0%
!! TTATTTCTTGGTGCATAATT+TGG - chr5_2:13791567-13791586 Msa0758500:intron 25.0%
!!! GGTATCACTTTTCAAAATTT+TGG - chr5_2:13791588-13791607 Msa0758500:intron 25.0%
! TGATTCTGTAGTTTCTATTA+AGG - chr5_2:13791805-13791824 Msa0758500:intron 25.0%
! AACATTATTAACATTTGCAG+AGG + chr5_2:13792003-13792022 None:intergenic 25.0%
!!! CTTAAAATTTTAAGTTCTGG+TGG - chr5_2:13792047-13792066 Msa0758500:intron 25.0%
! AATTTGCAAGTGAAAATTTC+AGG - chr5_2:13792260-13792279 Msa0758500:intron 25.0%
!!! ACTTATTTCTAGAAAGAAAC+TGG - chr5_2:13792714-13792733 Msa0758500:CDS 25.0%
!!! CTTATTTCTAGAAAGAAACT+GGG - chr5_2:13792715-13792734 Msa0758500:CDS 25.0%
! TAAAGATGAATCATCATTGA+AGG - chr5_2:13792739-13792758 Msa0758500:CDS 25.0%
!! GTAAATAAATCCAAGCATTT+TGG - chr5_2:13792761-13792780 Msa0758500:CDS 25.0%
! AATCACTATGTAATAATGAC+TGG + chr5_2:13792839-13792858 None:intergenic 25.0%
!!! TTTTGTTTGAGTTGTTCTTT+TGG - chr5_2:13792885-13792904 Msa0758500:intron 25.0%
!!! ATTCTCTTTTTTGCTTTCAT+AGG - chr5_2:13792964-13792983 Msa0758500:intron 25.0%
!! AGTATTGAAAAATGTTACGT+AGG + chr5_2:13793131-13793150 None:intergenic 25.0%
! AACAACTAACATAGAAAGAT+AGG - chr5_2:13793177-13793196 Msa0758500:intron 25.0%
! ACAACTAACATAGAAAGATA+GGG - chr5_2:13793178-13793197 Msa0758500:intron 25.0%
!!! TTTCTTTTGTTTGTGAATGT+AGG - chr5_2:13793412-13793431 Msa0758500:CDS 25.0%
!!! TTCTTTTGTTTGTGAATGTA+GGG - chr5_2:13793413-13793432 Msa0758500:CDS 25.0%
! TATGTCTAAACATAGCTAAA+TGG - chr5_2:13793639-13793658 Msa0758500:intron 25.0%
!! AAACATAGCTAAATGGTTTT+TGG - chr5_2:13793646-13793665 Msa0758500:intron 25.0%
!! AAACCTTATAATAGCTCTTT+TGG + chr5_2:13793708-13793727 None:intergenic 25.0%
!! TATAAGGTTTTGCTTATACT+TGG - chr5_2:13793718-13793737 Msa0758500:intron 25.0%
! GTTAAAAACGAAATTCAAGT+TGG + chr5_2:13793948-13793967 None:intergenic 25.0%
!!! AGTAAGTTGTGATTAGTTTT+TGG - chr5_2:13794050-13794069 Msa0758500:CDS 25.0%
!!! ATTAGTTTTTGGAAAGGAAT+TGG - chr5_2:13794061-13794080 Msa0758500:CDS 25.0%
!!! TCAACTTTGTTTTTAGACTT+TGG - chr5_2:13794197-13794216 Msa0758500:CDS 25.0%
! GCCAATATGGTTTATTTATT+TGG - chr5_2:13794420-13794439 Msa0758500:intron 25.0%
! AAGTCTGATATATATTGTGA+TGG - chr5_2:13794550-13794569 Msa0758500:intron 25.0%
! TCTCAATATAATTAGGTTTG+TGG - chr5_2:13794646-13794665 Msa0758500:intron 25.0%
!! ATTATGTAATCTAAGCATTG+TGG - chr5_2:13794829-13794848 Msa0758500:intron 25.0%
!! GTAATTTTGTAATGCACTTT+TGG - chr5_2:13795060-13795079 Msa0758500:intron 25.0%
! ATCACAACATTGAATATTGT+GGG + chr5_2:13795443-13795462 None:intergenic 25.0%
! AAGTAACATTCCTAAACTTT+GGG - chr5_2:13795525-13795544 Msa0758500:intron 25.0%
! CAGAATTAATTCTACACATT+TGG + chr5_2:13795607-13795626 None:intergenic 25.0%
! ATGCTAAAAATCAATTGTAG+AGG + chr5_2:13795709-13795728 None:intergenic 25.0%
! TGAATGTAAAGTGATATGTT+TGG + chr5_2:13795751-13795770 None:intergenic 25.0%
!!! ATAATGTCGACTTTATATGT+TGG + chr5_2:13795878-13795897 None:intergenic 25.0%
! TAAAGTCGACATTATGAAAA+AGG - chr5_2:13795883-13795902 Msa0758500:intron 25.0%
! AATCAAAAATGGAACTGTAA+AGG + chr5_2:13796083-13796102 None:intergenic 25.0%
!!! CTTACTTTTCATGACTTTTT+TGG + chr5_2:13796133-13796152 None:intergenic 25.0%
! TCATGAAAAGTAAGTATCTA+AGG - chr5_2:13796139-13796158 Msa0758500:five_prime_UTR 25.0%
! TGATAGATTGATCTTTGATT+TGG - chr5_2:13796293-13796312 Msa0758500:five_prime_UTR 25.0%
GAGAAAGAAGAAAGAAGAAT+GGG - chr5_2:13788143-13788162 Msa0758500:three_prime_UTR 30.0%
TTGATGAATGAAGAACAAAC+AGG + chr5_2:13788216-13788235 None:intergenic 30.0%
GTTTGTTCTTCATTCATCAA+AGG - chr5_2:13788216-13788235 Msa0758500:three_prime_UTR 30.0%
! ATATCACGGAAACAATTTTC+TGG + chr5_2:13788436-13788455 None:intergenic 30.0%
! AATCACTTATGGTAGCTTTT+GGG + chr5_2:13788641-13788660 None:intergenic 30.0%
! TAATCACTTATGGTAGCTTT+TGG + chr5_2:13788642-13788661 None:intergenic 30.0%
AAGCTACCATAAGTGATTAT+TGG - chr5_2:13788643-13788662 Msa0758500:three_prime_UTR 30.0%
AGCTACCATAAGTGATTATT+GGG - chr5_2:13788644-13788663 Msa0758500:three_prime_UTR 30.0%
TAACACCCAATAATCACTTA+TGG + chr5_2:13788652-13788671 None:intergenic 30.0%
TGTTAAAATTGTTGTAGGAG+TGG - chr5_2:13788674-13788693 Msa0758500:three_prime_UTR 30.0%
! CTACTTGATCAATTTTCATG+TGG - chr5_2:13789004-13789023 Msa0758500:exon 30.0%
TATGTATACTTCTATAGGCA+AGG - chr5_2:13789156-13789175 Msa0758500:intron 30.0%
! CTCTGTTTTGTGATAGTATA+TGG + chr5_2:13789185-13789204 None:intergenic 30.0%
AAAGATTCTTCTTGCAAAAG+AGG - chr5_2:13789329-13789348 Msa0758500:intron 30.0%
ATGTTCTGTGGTGAAAATAA+AGG + chr5_2:13789400-13789419 None:intergenic 30.0%
!!! TGCTCAGAAGTTTTTTTCTA+AGG - chr5_2:13789455-13789474 Msa0758500:intron 30.0%
!!! ATTGCTTTTTGTTCTGTTTG+TGG - chr5_2:13789650-13789669 Msa0758500:CDS 30.0%
GTCACCAAAATTCATGATAT+AGG - chr5_2:13789765-13789784 Msa0758500:intron 30.0%
CTGATAGGATACTTAAAACT+TGG - chr5_2:13789929-13789948 Msa0758500:intron 30.0%
TATATGCTACCTTCAAGAAA+GGG + chr5_2:13790040-13790059 None:intergenic 30.0%
ATATATGCTACCTTCAAGAA+AGG + chr5_2:13790041-13790060 None:intergenic 30.0%
AATAGTCATATAGCATTGCA+CGG + chr5_2:13790247-13790266 None:intergenic 30.0%
!!! TGACTATTTTTATAGGCTAG+TGG - chr5_2:13790259-13790278 Msa0758500:intron 30.0%
!! TACATTGAAAGGTGTTCATA+GGG - chr5_2:13790327-13790346 Msa0758500:intron 30.0%
! GGATTTGAAATCAAAGCTAT+AGG + chr5_2:13790490-13790509 None:intergenic 30.0%
! ATCAAGTACTGCATGAAAAA+AGG + chr5_2:13790511-13790530 None:intergenic 30.0%
TGCTAACACCTAATTTATTC+AGG + chr5_2:13790548-13790567 None:intergenic 30.0%
AGTACAGTGAACAAAATGTA+TGG + chr5_2:13790692-13790711 None:intergenic 30.0%
ATTCCCCCAATTATAGTATA+TGG - chr5_2:13790742-13790761 Msa0758500:intron 30.0%
TTATTCTTCTTGCTTATAGG+CGG - chr5_2:13791059-13791078 Msa0758500:intron 30.0%
GAAAGGTTAATGATAAGAAG+GGG - chr5_2:13791101-13791120 Msa0758500:intron 30.0%
AAAGGTTAATGATAAGAAGG+GGG - chr5_2:13791102-13791121 Msa0758500:intron 30.0%
AAGTTACTGATGACTCTATT+AGG + chr5_2:13791303-13791322 None:intergenic 30.0%
TTTGTGCTTCTTAGTTTATG+CGG - chr5_2:13791367-13791386 Msa0758500:intron 30.0%
TACACATTATCAAATCAAGC+AGG + chr5_2:13791781-13791800 None:intergenic 30.0%
ACACCTTATCATCAAAATGT+AGG + chr5_2:13791831-13791850 None:intergenic 30.0%
AACCAAAATTTAATAGTGCG+AGG - chr5_2:13791883-13791902 Msa0758500:CDS 30.0%
ACCAAAATTTAATAGTGCGA+GGG - chr5_2:13791884-13791903 Msa0758500:CDS 30.0%
TGCACTTAGTAACAACAAAA+CGG + chr5_2:13792134-13792153 None:intergenic 30.0%
TACAAAGAACAAAGAAAGAG+AGG + chr5_2:13792588-13792607 None:intergenic 30.0%
ATGGTTAATGAAGGTAAACT+AGG - chr5_2:13793203-13793222 Msa0758500:intron 30.0%
! TTAGTAGCTAGACTTTTTGT+TGG - chr5_2:13793325-13793344 Msa0758500:intron 30.0%
! TTGGAAAGAAAAGCACAATA+TGG - chr5_2:13793344-13793363 Msa0758500:intron 30.0%
!!! TTCTTGGTGCTTTTTACTAA+GGG - chr5_2:13793379-13793398 Msa0758500:intron 30.0%
GGATCTTCATACAAATAACT+GGG - chr5_2:13793444-13793463 Msa0758500:CDS 30.0%
!!! TTTGTTTTTTGGATCATAGC+GGG + chr5_2:13793492-13793511 None:intergenic 30.0%
!!! CTTTGTTTTTTGGATCATAG+CGG + chr5_2:13793493-13793512 None:intergenic 30.0%
GCTATGATCCAAAAAACAAA+GGG - chr5_2:13793492-13793511 Msa0758500:intron 30.0%
CTATGATCCAAAAAACAAAG+GGG - chr5_2:13793493-13793512 Msa0758500:intron 30.0%
CTTCCAAAAGAGCTATTATA+AGG - chr5_2:13793702-13793721 Msa0758500:intron 30.0%
!!! GTTGTGATTAGTTTTTGGAA+AGG - chr5_2:13794055-13794074 Msa0758500:CDS 30.0%
!!! ACTTTGTTTTTAGACTTTGG+TGG - chr5_2:13794200-13794219 Msa0758500:CDS 30.0%
ACACAATAAACCAAGTAAAG+TGG - chr5_2:13794307-13794326 Msa0758500:intron 30.0%
AGAATAGAGAGAAATACAAG+TGG - chr5_2:13794393-13794412 Msa0758500:intron 30.0%
!!! TATTTCCACTTTTTACCTTG+AGG - chr5_2:13794586-13794605 Msa0758500:intron 30.0%
ATCAACAGTTCTATCATTGA+GGG + chr5_2:13794753-13794772 None:intergenic 30.0%
! GTAAGTTGACATGTTCTTAA+TGG - chr5_2:13794854-13794873 Msa0758500:intron 30.0%
!! CCTATAGTGTTTTTATCGTA+TGG + chr5_2:13794925-13794944 None:intergenic 30.0%
CCATACGATAAAAACACTAT+AGG - chr5_2:13794922-13794941 Msa0758500:intron 30.0%
ACTATAGGAATATTGCACAA+TGG - chr5_2:13794937-13794956 Msa0758500:intron 30.0%
GGTTCCAATAACATGTAATA+AGG - chr5_2:13795024-13795043 Msa0758500:intron 30.0%
CACTCCTTATTACATGTTAT+TGG + chr5_2:13795031-13795050 None:intergenic 30.0%
TGTCAGTTCAAATGACAAAA+AGG + chr5_2:13795094-13795113 None:intergenic 30.0%
CTTGGTTCAAAATCATCATA+AGG + chr5_2:13795214-13795233 None:intergenic 30.0%
! CTTATGATGATTTTGAACCA+AGG - chr5_2:13795212-13795231 Msa0758500:CDS 30.0%
AAGTACAAAGAGATTTACCT+TGG + chr5_2:13795232-13795251 None:intergenic 30.0%
TCTCTTTGTACTTCATAAAG+TGG - chr5_2:13795239-13795258 Msa0758500:intron 30.0%
TAATTCATAGGTTTAAGCAG+TGG - chr5_2:13795301-13795320 Msa0758500:intron 30.0%
AATTCATAGGTTTAAGCAGT+GGG - chr5_2:13795302-13795321 Msa0758500:intron 30.0%
GATCACAACATTGAATATTG+TGG + chr5_2:13795444-13795463 None:intergenic 30.0%
! TTCTCTATCCATGGTTATTT+TGG - chr5_2:13795464-13795483 Msa0758500:intron 30.0%
CAAGTAACATTCCTAAACTT+TGG - chr5_2:13795524-13795543 Msa0758500:intron 30.0%
!! GTGTTTAGTTCCATTTTTAG+AGG - chr5_2:13795567-13795586 Msa0758500:intron 30.0%
!! TTTAGTTCCATTTTTAGAGG+AGG - chr5_2:13795570-13795589 Msa0758500:intron 30.0%
!! AATTTTGCCTCCTCTAAAAA+TGG + chr5_2:13795580-13795599 None:intergenic 30.0%
GCACAAGTTAGAATCAATTA+TGG + chr5_2:13795668-13795687 None:intergenic 30.0%
! TAATTGATTCTAACTTGTGC+TGG - chr5_2:13795668-13795687 Msa0758500:intron 30.0%
CACTCTAATTCTTGAACTTT+AGG + chr5_2:13795958-13795977 None:intergenic 30.0%
CTAAAGTTCAAGAATTAGAG+TGG - chr5_2:13795956-13795975 Msa0758500:five_prime_UTR 30.0%
! AAGGATGACTTTAGAAGATT+TGG - chr5_2:13796158-13796177 Msa0758500:five_prime_UTR 30.0%
ACACAAGACATATAATTGCA+AGG - chr5_2:13796185-13796204 Msa0758500:five_prime_UTR 30.0%
AGACATATAATTGCAAGGTT+AGG - chr5_2:13796190-13796209 Msa0758500:five_prime_UTR 30.0%
AATGCTGAGAAAAATTTAGG+TGG - chr5_2:13796228-13796247 Msa0758500:five_prime_UTR 30.0%
AGAAAAATTTAGGTGGTGAA+TGG - chr5_2:13796235-13796254 Msa0758500:five_prime_UTR 30.0%
!! TAGATTGATCTTTGATTTGG+AGG - chr5_2:13796296-13796315 Msa0758500:five_prime_UTR 30.0%
GGAGAAAGAAGAAAGAAGAA+TGG - chr5_2:13788142-13788161 Msa0758500:three_prime_UTR 35.0%
TGTTCTTCATTCATCAAAGG+TGG - chr5_2:13788219-13788238 Msa0758500:three_prime_UTR 35.0%
TTCATTCATCAAAGGTGGTA+AGG - chr5_2:13788224-13788243 Msa0758500:three_prime_UTR 35.0%
! AATTGAGGTTGCATGTTTTC+AGG - chr5_2:13788373-13788392 Msa0758500:three_prime_UTR 35.0%
!!! GCATAAGCTGTTATTTTCCT+TGG - chr5_2:13788543-13788562 Msa0758500:three_prime_UTR 35.0%
!! GTTATTTTCCTTGGATTCTG+TGG - chr5_2:13788552-13788571 Msa0758500:three_prime_UTR 35.0%
!! TAGCTTTTGGGGATAACTTA+TGG + chr5_2:13788629-13788648 None:intergenic 35.0%
! ATCACTTATGGTAGCTTTTG+GGG + chr5_2:13788640-13788659 None:intergenic 35.0%
AATTGTTGTAGGAGTGGTTT+AGG - chr5_2:13788680-13788699 Msa0758500:three_prime_UTR 35.0%
!! ATACATGTTTGGTTTGCTTC+TGG - chr5_2:13788711-13788730 Msa0758500:three_prime_UTR 35.0%
TGCTGTGTAAGTGATTCATA+GGG - chr5_2:13788831-13788850 Msa0758500:three_prime_UTR 35.0%
ATAGGGGTGATTATTCATGT+TGG - chr5_2:13788848-13788867 Msa0758500:three_prime_UTR 35.0%
!! TTGCTATTTGGATTTGATGC+AGG - chr5_2:13788940-13788959 Msa0758500:three_prime_UTR 35.0%
! TGCTATTTGGATTTGATGCA+GGG - chr5_2:13788941-13788960 Msa0758500:three_prime_UTR 35.0%
TGGAAATTACTATGCCTTGA+AGG - chr5_2:13789024-13789043 Msa0758500:CDS 35.0%
TCACAAAACAGAGAGAAAAG+TGG - chr5_2:13789192-13789211 Msa0758500:CDS 35.0%
AATTTATGATGAATGGCCCT+TGG - chr5_2:13789523-13789542 Msa0758500:intron 35.0%
TTTGCATTTAGCATCTCCAA+GGG + chr5_2:13789542-13789561 None:intergenic 35.0%
! TGAACTTTTCCCTTTCTTGA+AGG - chr5_2:13790028-13790047 Msa0758500:intron 35.0%
TCAAGCTATTGTTGAGTCTA+TGG - chr5_2:13790070-13790089 Msa0758500:intron 35.0%
AAGTATTCATCAGCGAAAAG+AGG - chr5_2:13790164-13790183 Msa0758500:intron 35.0%
!!! AAAAGAGGTTTTGGAGCAAA+TGG - chr5_2:13790179-13790198 Msa0758500:intron 35.0%
!!! AAAGAGGTTTTGGAGCAAAT+GGG - chr5_2:13790180-13790199 Msa0758500:intron 35.0%
ATAGTCATATAGCATTGCAC+GGG + chr5_2:13790246-13790265 None:intergenic 35.0%
TTGGACATAGTTTCAGACTT+CGG + chr5_2:13790298-13790317 None:intergenic 35.0%
TTTCAATGTAGACATGACCT+TGG + chr5_2:13790317-13790336 None:intergenic 35.0%
AAGGTCATGTCTACATTGAA+AGG - chr5_2:13790316-13790335 Msa0758500:intron 35.0%
!! CTACATTGAAAGGTGTTCAT+AGG - chr5_2:13790326-13790345 Msa0758500:intron 35.0%
!!! CATAGGGTTTTGAAAGCAAA+TGG - chr5_2:13790343-13790362 Msa0758500:intron 35.0%
AACAGTTCATTCTTCAAACC+TGG + chr5_2:13790393-13790412 None:intergenic 35.0%
!! GAAAATGTTGATGATACAGC+AGG - chr5_2:13790570-13790589 Msa0758500:intron 35.0%
TGGTAAACAACTTACCAACA+TGG + chr5_2:13791174-13791193 None:intergenic 35.0%
! ATAATGGAATCTCACCTAAG+TGG - chr5_2:13791256-13791275 Msa0758500:intron 35.0%
TAATGGAATCTCACCTAAGT+GGG - chr5_2:13791257-13791276 Msa0758500:intron 35.0%
! TTTTCCAATGATGTGCTAAC+AGG - chr5_2:13791449-13791468 Msa0758500:intron 35.0%
TTTGGGTCAATTACAATTGC+AGG - chr5_2:13791606-13791625 Msa0758500:intron 35.0%
ATCTGATGTGTTTCTTCTTG+TGG + chr5_2:13791640-13791659 None:intergenic 35.0%
CCAAAGTTGTTCAAAGTGAT+GGG + chr5_2:13791707-13791726 None:intergenic 35.0%
TCCAAAGTTGTTCAAAGTGA+TGG + chr5_2:13791708-13791727 None:intergenic 35.0%
CAGGATATATTACCAACTTC+TGG + chr5_2:13791762-13791781 None:intergenic 35.0%
!! AGGCCTACATTTTGATGATA+AGG - chr5_2:13791825-13791844 Msa0758500:intron 35.0%
!! TTGATGATAAGGTGTTTTGC+AGG - chr5_2:13791836-13791855 Msa0758500:intron 35.0%
!! AGTGACATTGATTGGCTTAT+TGG - chr5_2:13792317-13792336 Msa0758500:intron 35.0%
!! ACATTGATTGGCTTATTGGA+TGG - chr5_2:13792321-13792340 Msa0758500:intron 35.0%
!! CATTGATTGGCTTATTGGAT+GGG - chr5_2:13792322-13792341 Msa0758500:intron 35.0%
GAGGTTTAGAGAAACATACA+GGG + chr5_2:13792569-13792588 None:intergenic 35.0%
AGAGGTTTAGAGAAACATAC+AGG + chr5_2:13792570-13792589 None:intergenic 35.0%
CAACATTGCAATATCTATGC+AGG - chr5_2:13792661-13792680 Msa0758500:CDS 35.0%
GCAATATCTATGCAGGTTAT+AGG - chr5_2:13792668-13792687 Msa0758500:CDS 35.0%
TATCTATGCAGGTTATAGGT+TGG - chr5_2:13792672-13792691 Msa0758500:CDS 35.0%
TCATCAAAAGCCAAAATGCT+TGG + chr5_2:13792774-13792793 None:intergenic 35.0%
!! GTTGTTCTTTTGGTTGTTGA+TGG - chr5_2:13792895-13792914 Msa0758500:CDS 35.0%
!! CTTTTGGTTGTTGATGGAAA+AGG - chr5_2:13792901-13792920 Msa0758500:CDS 35.0%
AACATAGAAAGATAGGGACA+TGG - chr5_2:13793184-13793203 Msa0758500:intron 35.0%
!!! GTTCTTGGTGCTTTTTACTA+AGG - chr5_2:13793378-13793397 Msa0758500:intron 35.0%
TTTGTATGAAGATCCCTCAA+TGG + chr5_2:13793439-13793458 None:intergenic 35.0%
GGGATCTTCATACAAATAAC+TGG - chr5_2:13793443-13793462 Msa0758500:CDS 35.0%
!!! TTGTTTTTTGGATCATAGCG+GGG + chr5_2:13793491-13793510 None:intergenic 35.0%
CGCTATGATCCAAAAAACAA+AGG - chr5_2:13793491-13793510 Msa0758500:intron 35.0%
!!! AACTTAGCCCCTTTGTTTTT+TGG + chr5_2:13793503-13793522 None:intergenic 35.0%
AAAAACAAAGGGGCTAAGTT+TGG - chr5_2:13793503-13793522 Msa0758500:intron 35.0%
TGGAAGTTAGAAAACTGTCA+TGG + chr5_2:13793688-13793707 None:intergenic 35.0%
! GATGTTGATTGTAATTGTCG+TGG - chr5_2:13794104-13794123 Msa0758500:CDS 35.0%
TGATCTCTTTCCACTTTACT+TGG + chr5_2:13794320-13794339 None:intergenic 35.0%
GTGGAAAGAGATCAACAATA+TGG - chr5_2:13794326-13794345 Msa0758500:intron 35.0%
GATAACCTCAAGGTAAAAAG+TGG + chr5_2:13794594-13794613 None:intergenic 35.0%
CATCAACAGTTCTATCATTG+AGG + chr5_2:13794754-13794773 None:intergenic 35.0%
AGAACTGTTGATGTCTTATC+TGG - chr5_2:13794761-13794780 Msa0758500:intron 35.0%
AGTTGACATGTTCTTAATGG+TGG - chr5_2:13794857-13794876 Msa0758500:intron 35.0%
ATTCATAGGTTTAAGCAGTG+GGG - chr5_2:13795303-13795322 Msa0758500:intron 35.0%
AATGAACGTGTACACAAATC+AGG - chr5_2:13795852-13795871 Msa0758500:intron 35.0%
AGAATTAGAGTGGTTTAGTG+AGG - chr5_2:13795966-13795985 Msa0758500:five_prime_UTR 35.0%
GGGAATGCTGAGAAAAATTT+AGG - chr5_2:13796225-13796244 Msa0758500:five_prime_UTR 35.0%
!! TGTCTGACATACATTTTGGT+TGG + chr5_2:13796327-13796346 None:intergenic 35.0%
! GATGTGTCTGACATACATTT+TGG + chr5_2:13796331-13796350 None:intergenic 35.0%
GAGAGAAGCTGAAAATCAGA+TGG + chr5_2:13788170-13788189 None:intergenic 40.0%
! TCTGTGGTGACTCTGTATTT+TGG - chr5_2:13788568-13788587 Msa0758500:three_prime_UTR 40.0%
! CTGTGGTGACTCTGTATTTT+GGG - chr5_2:13788569-13788588 Msa0758500:three_prime_UTR 40.0%
AGGAGCTGTGTATACATGTT+TGG - chr5_2:13788700-13788719 Msa0758500:three_prime_UTR 40.0%
CTGCTGTGTAAGTGATTCAT+AGG - chr5_2:13788830-13788849 Msa0758500:three_prime_UTR 40.0%
GCTGTGTAAGTGATTCATAG+GGG - chr5_2:13788832-13788851 Msa0758500:three_prime_UTR 40.0%
TTGATGCAGGGTCAAAAAGA+AGG - chr5_2:13788953-13788972 Msa0758500:three_prime_UTR 40.0%
GAATGAAGGGAAAACCTTCA+AGG + chr5_2:13789041-13789060 None:intergenic 40.0%
TAAAGTTATACAGTCGAGCC+TGG - chr5_2:13789249-13789268 Msa0758500:CDS 40.0%
! AATACCTTCGATTTTTCGCC+AGG + chr5_2:13789270-13789289 None:intergenic 40.0%
! CTTTGTATCGACATGTTCTG+TGG + chr5_2:13789412-13789431 None:intergenic 40.0%
GTTTGCATTTAGCATCTCCA+AGG + chr5_2:13789543-13789562 None:intergenic 40.0%
GCTAAATGCAAACTTCCTTG+AGG - chr5_2:13789550-13789569 Msa0758500:intron 40.0%
GACTCTTGTGAGTCACAAAA+AGG - chr5_2:13789622-13789641 Msa0758500:intron 40.0%
AGGATACTTAAAACTTGGCC+TGG - chr5_2:13789934-13789953 Msa0758500:intron 40.0%
! CTTGTGGATTTAAGGCTCAA+TGG + chr5_2:13789963-13789982 None:intergenic 40.0%
GCTATTGTTGAGTCTATGGA+AGG - chr5_2:13790074-13790093 Msa0758500:intron 40.0%
GTCTATGGAAGGTGAGAAAA+TGG - chr5_2:13790085-13790104 Msa0758500:intron 40.0%
AAGAGCAAAATCCATTGTGC+AGG + chr5_2:13790140-13790159 None:intergenic 40.0%
! TCATCAGCGAAAAGAGGTTT+TGG - chr5_2:13790170-13790189 Msa0758500:intron 40.0%
CAGCTTCTTCAGAAAGCTTA+TGG + chr5_2:13790206-13790225 None:intergenic 40.0%
TTTCAGACTTCGGATTCCAT+GGG + chr5_2:13790288-13790307 None:intergenic 40.0%
! GAAGTCTGAAACTATGTCCA+AGG - chr5_2:13790297-13790316 Msa0758500:intron 40.0%
! TATCTCGATAACTTTTGGCC+AGG - chr5_2:13790372-13790391 Msa0758500:intron 40.0%
AAGCAGATTAGAATCAACGC+AGG + chr5_2:13790438-13790457 None:intergenic 40.0%
ATTCATGCCAGCAACATTTC+AGG - chr5_2:13790461-13790480 Msa0758500:intron 40.0%
GAGCTAATTACGGCACATTA+AGG + chr5_2:13790670-13790689 None:intergenic 40.0%
GGGGAATGAACTTTCATATG+TGG + chr5_2:13790729-13790748 None:intergenic 40.0%
GGTTGGAAATCTTTCGAAGT+TGG - chr5_2:13790830-13790849 Msa0758500:intron 40.0%
!! AGACTCTTTTATTTGACCCC+AGG - chr5_2:13790978-13790997 Msa0758500:intron 40.0%
CATTGTCTGCATATACCACA+AGG + chr5_2:13791011-13791030 None:intergenic 40.0%
GAATTTATGCTCAGCCATGT+TGG - chr5_2:13791157-13791176 Msa0758500:intron 40.0%
TGATCCTGTTAGCACATCAT+TGG + chr5_2:13791456-13791475 None:intergenic 40.0%
GGATCAGACATAATAGCATC+AGG - chr5_2:13791470-13791489 Msa0758500:intron 40.0%
!! AGCCTTTCTAAAGTCATTGC+CGG - chr5_2:13791514-13791533 Msa0758500:intron 40.0%
! AACCGGCAATGACTTTAGAA+AGG + chr5_2:13791519-13791538 None:intergenic 40.0%
TTGTGAGGAAAGTCTATCAG+AGG - chr5_2:13791665-13791684 Msa0758500:CDS 40.0%
TGTGAGGAAAGTCTATCAGA+GGG - chr5_2:13791666-13791685 Msa0758500:CDS 40.0%
!! AGTTGTTCAAAGTGATGGGT+AGG + chr5_2:13791703-13791722 None:intergenic 40.0%
CCCATCACTTTGAACAACTT+TGG - chr5_2:13791704-13791723 Msa0758500:CDS 40.0%
AAGTTCTGTTAGCCAGAAGT+TGG - chr5_2:13791747-13791766 Msa0758500:intron 40.0%
! GCCCTCGCACTATTAAATTT+TGG + chr5_2:13791888-13791907 None:intergenic 40.0%
GGAACAGAAATTTGCCTTGT+GGG + chr5_2:13791982-13792001 None:intergenic 40.0%
AGGAACAGAAATTTGCCTTG+TGG + chr5_2:13791983-13792002 None:intergenic 40.0%
CACTTCTGATATGCAATCAC+AGG - chr5_2:13792294-13792313 Msa0758500:intron 40.0%
ATCACAGGAGTGACATTGAT+TGG - chr5_2:13792309-13792328 Msa0758500:intron 40.0%
GTTTAGAGAAACATACAGGG+AGG + chr5_2:13792566-13792585 None:intergenic 40.0%
!! AGGTTATAGGTTGGTCAATG+TGG - chr5_2:13792681-13792700 Msa0758500:CDS 40.0%
GATAGGGACATGGTTAATGA+AGG - chr5_2:13793194-13793213 Msa0758500:intron 40.0%
ATGGAATCAGCTGTTGTTCT+TGG - chr5_2:13793363-13793382 Msa0758500:intron 40.0%
!!! TGTTTTTTGGATCATAGCGG+GGG + chr5_2:13793490-13793509 None:intergenic 40.0%
!! GGTACTATGTAACTTGCTGA+AGG - chr5_2:13793524-13793543 Msa0758500:intron 40.0%
!! TGTCGAATGAAAGAAGCATC+AGG - chr5_2:13793846-13793865 Msa0758500:CDS 40.0%
TACAAGTGGAGAAGCCAATA+TGG - chr5_2:13794407-13794426 Msa0758500:intron 40.0%
CAACATGCATGATAACCTCA+AGG + chr5_2:13794604-13794623 None:intergenic 40.0%
AACAGTTCTATCATTGAGGG+AGG + chr5_2:13794750-13794769 None:intergenic 40.0%
!! TCATCATAAGGAGTATCCAC+TGG + chr5_2:13795202-13795221 None:intergenic 40.0%
AAAACTTCTCCATGGTCACT+GGG + chr5_2:13795409-13795428 None:intergenic 40.0%
AAAAACTTCTCCATGGTCAC+TGG + chr5_2:13795410-13795429 None:intergenic 40.0%
GTTGTGATCTTCTCTATCCA+TGG - chr5_2:13795455-13795474 Msa0758500:intron 40.0%
CTGCTTGACCAAAATAACCA+TGG + chr5_2:13795475-13795494 None:intergenic 40.0%
TTTGGTCAAGCAGATGTTCT+TGG - chr5_2:13795482-13795501 Msa0758500:intron 40.0%
AGCTCAACTACCCAAAGTTT+AGG + chr5_2:13795538-13795557 None:intergenic 40.0%
!!! TTAGCATGTGCTTGGTTTTG+CGG + chr5_2:13795833-13795852 None:intergenic 40.0%
ACGTTCATTTAGCATGTGCT+TGG + chr5_2:13795841-13795860 None:intergenic 40.0%
GTGAGGTTATATTCATGCTG+AGG - chr5_2:13795983-13796002 Msa0758500:intron 40.0%
!!! CTGACATACATTTTGGTTGG+TGG + chr5_2:13796324-13796343 None:intergenic 40.0%
CATCAAAGGTGGTAAGGTTG+CGG - chr5_2:13788230-13788249 Msa0758500:three_prime_UTR 45.0%
!! GTAAGGTTGCGGTTCTGAAT+AGG - chr5_2:13788241-13788260 Msa0758500:three_prime_UTR 45.0%
AGCTGCTTCAGCATCATCAA+AGG - chr5_2:13788276-13788295 Msa0758500:three_prime_UTR 45.0%
TGCTTCAGCATCATCAAAGG+TGG - chr5_2:13788279-13788298 Msa0758500:three_prime_UTR 45.0%
! TCACTGAAGCACTTGCTGAT+AGG - chr5_2:13789914-13789933 Msa0758500:intron 45.0%
! TTTAAGGCTCAATGGAGTCC+AGG + chr5_2:13789955-13789974 None:intergenic 45.0%
GTTTCAGACTTCGGATTCCA+TGG + chr5_2:13790289-13790308 None:intergenic 45.0%
! ATGCTGCTTCTATGCTCTTG+AGG - chr5_2:13790802-13790821 Msa0758500:intron 45.0%
CTTCTATGCTCTTGAGGTCA+CGG - chr5_2:13790808-13790827 Msa0758500:intron 45.0%
TTCTATGCTCTTGAGGTCAC+GGG - chr5_2:13790809-13790828 Msa0758500:intron 45.0%
!! CTCTTTTATTTGACCCCAGG+AGG - chr5_2:13790981-13791000 Msa0758500:intron 45.0%
TAATGATAAGAAGGGGGCAG+AGG - chr5_2:13791108-13791127 Msa0758500:intron 45.0%
AATGATAAGAAGGGGGCAGA+GGG - chr5_2:13791109-13791128 Msa0758500:intron 45.0%
! GAATCTCACCTAAGTGGGTT+CGG - chr5_2:13791262-13791281 Msa0758500:intron 45.0%
CTATGTACTCCATCCACACA+GGG + chr5_2:13791496-13791515 None:intergenic 45.0%
CACATCAGATGACTGTTGTG+AGG - chr5_2:13791650-13791669 Msa0758500:intron 45.0%
!! TAAGGTGTTTTGCAGGCTAG+AGG - chr5_2:13791843-13791862 Msa0758500:intron 45.0%
!! AAGGTGTTTTGCAGGCTAGA+GGG - chr5_2:13791844-13791863 Msa0758500:intron 45.0%
TTGGCTTATTGGATGGGTCT+TGG - chr5_2:13792328-13792347 Msa0758500:intron 45.0%
TTGTGAATGTAGGGCCATTG+AGG - chr5_2:13793422-13793441 Msa0758500:CDS 45.0%
TGTGAATGTAGGGCCATTGA+GGG - chr5_2:13793423-13793442 Msa0758500:CDS 45.0%
TTGCTGAAGGCTTCACTCAT+CGG - chr5_2:13793537-13793556 Msa0758500:intron 45.0%
AAGTTGGAAGACAGCAGTGA+AGG + chr5_2:13793932-13793951 None:intergenic 45.0%
GGTTAAGTGTGTGAAGACTC+TGG - chr5_2:13794713-13794732 Msa0758500:intron 45.0%
ATTCCTTTCAGCACTTCCAG+TGG - chr5_2:13795183-13795202 Msa0758500:CDS 45.0%
!! TATCCACTGGAAGTGCTGAA+AGG + chr5_2:13795189-13795208 None:intergenic 45.0%
!!! AAGCAGTGGGGTTTTGAAAG+TGG - chr5_2:13795315-13795334 Msa0758500:intron 45.0%
!!! AGTGGGGTTTTGAAAGTGGA+TGG - chr5_2:13795319-13795338 Msa0758500:intron 45.0%
!!! GTGGGGTTTTGAAAGTGGAT+GGG - chr5_2:13795320-13795339 Msa0758500:intron 45.0%
!!! TGGGGTTTTGAAAGTGGATG+GGG - chr5_2:13795321-13795340 Msa0758500:intron 45.0%
AGATACTGCAGGAAGAGTGA+AGG - chr5_2:13795344-13795363 Msa0758500:intron 45.0%
CCTGCTGAAAAACTTCTCCA+TGG + chr5_2:13795417-13795436 None:intergenic 45.0%
!! CCATGGAGAAGTTTTTCAGC+AGG - chr5_2:13795414-13795433 Msa0758500:CDS 45.0%
AATTGCAAGGTTAGGACTGC+TGG - chr5_2:13796198-13796217 Msa0758500:five_prime_UTR 45.0%
TATCACCCTCTTGTAAGTCG+CGG + chr5_2:13796278-13796297 None:intergenic 45.0%
ATGTATGTCAGACACATCCG+CGG - chr5_2:13796333-13796352 Msa0758500:five_prime_UTR 45.0%
!! TATATCAAAAAATATTTATT+TGG - chr5_2:13790865-13790884 Msa0758500:intron 5.0%
ATTGGAACGGGAGAGGAAGA+AGG - chr5_2:13788065-13788084 Msa0758500:three_prime_UTR 50.0%
TTGGAACGGGAGAGGAAGAA+GGG - chr5_2:13788066-13788085 Msa0758500:three_prime_UTR 50.0%
AGGAAGAAGGGTGAGAGAAG+AGG - chr5_2:13788078-13788097 Msa0758500:three_prime_UTR 50.0%
GGAAGAAGGGTGAGAGAAGA+GGG - chr5_2:13788079-13788098 Msa0758500:three_prime_UTR 50.0%
AGGGTGAGAGAAGAGGGAAA+CGG - chr5_2:13788085-13788104 Msa0758500:three_prime_UTR 50.0%
AAGAGGGAAACGGGAGAAAG+AGG - chr5_2:13788095-13788114 Msa0758500:three_prime_UTR 50.0%
AGAGGGAAACGGGAGAAAGA+GGG - chr5_2:13788096-13788115 Msa0758500:three_prime_UTR 50.0%
GAAACGGGAGAAAGAGGGAA+CGG - chr5_2:13788101-13788120 Msa0758500:three_prime_UTR 50.0%
AAACGGGAGAAAGAGGGAAC+GGG - chr5_2:13788102-13788121 Msa0758500:three_prime_UTR 50.0%
AGGGAACGGGAGAAAGAAGA+GGG - chr5_2:13788115-13788134 Msa0758500:three_prime_UTR 50.0%
ACGGGAGAAAGAAGAGGGAA+CGG - chr5_2:13788120-13788139 Msa0758500:three_prime_UTR 50.0%
CAGAGTCACCACAGAATCCA+AGG + chr5_2:13788563-13788582 None:intergenic 50.0%
ATGCTGCTGAACCTGCACAA+TGG - chr5_2:13790126-13790145 Msa0758500:intron 50.0%
TCATATAGCATTGCACGGGC+TGG + chr5_2:13790242-13790261 None:intergenic 50.0%
TATAGGCTAGTGGTGACCCA+TGG - chr5_2:13790269-13790288 Msa0758500:intron 50.0%
TAGGACGCCTGAAATGTTGC+TGG + chr5_2:13790471-13790490 None:intergenic 50.0%
TCACATGACCGAACCCACTT+AGG + chr5_2:13791273-13791292 None:intergenic 50.0%
TAATAGCATCAGGCCCTGTG+TGG - chr5_2:13791480-13791499 Msa0758500:intron 50.0%
GCTATGTACTCCATCCACAC+AGG + chr5_2:13791497-13791516 None:intergenic 50.0%
CGAGGGCAGTATACAGAGAA+CGG - chr5_2:13791901-13791920 Msa0758500:intron 50.0%
!! ATGCTTGCTGTACCACCAAC+TGG - chr5_2:13791954-13791973 Msa0758500:intron 50.0%
TTTGCCTTGTGGGATCCAGT+TGG + chr5_2:13791972-13791991 None:intergenic 50.0%
TATTGGATGGGTCTTGGCTC+AGG - chr5_2:13792334-13792353 Msa0758500:intron 50.0%
! TTTTCGTTGGTCACAGCGCA+CGG - chr5_2:13792494-13792513 Msa0758500:CDS 50.0%
TAATGGCCATCGTGCTACCA+AGG + chr5_2:13792524-13792543 None:intergenic 50.0%
GCTTCTTCTCGAGTCTTCAC+AGG - chr5_2:13794894-13794913 Msa0758500:intron 50.0%
CAGCTTTGCAACTGAGCTCA+GGG + chr5_2:13795137-13795156 None:intergenic 50.0%
CTCAGTTGCAAAGCTGCAGA+TGG - chr5_2:13795141-13795160 Msa0758500:CDS 50.0%
GTTACTTGTCCGTCGATGTC+TGG + chr5_2:13795512-13795531 None:intergenic 50.0%
GTAGACCGCGACTTACAAGA+GGG - chr5_2:13796270-13796289 Msa0758500:five_prime_UTR 50.0%
GGGTGAGAGAAGAGGGAAAC+GGG - chr5_2:13788086-13788105 Msa0758500:three_prime_UTR 55.0%
GAGGGAACGGGAGAAAGAAG+AGG - chr5_2:13788114-13788133 Msa0758500:three_prime_UTR 55.0%
CGGGAGAAAGAAGAGGGAAC+GGG - chr5_2:13788121-13788140 Msa0758500:three_prime_UTR 55.0%
CGAGCCTGGCGAAAAATCGA+AGG - chr5_2:13789263-13789282 Msa0758500:CDS 55.0%
!! TGATACAGCAGGTGCTGCTC+AGG - chr5_2:13790581-13790600 Msa0758500:intron 55.0%
ATGCTCTTGAGGTCACGGGT+TGG - chr5_2:13790813-13790832 Msa0758500:intron 55.0%
TACCACAAGGCAGACCTCCT+GGG + chr5_2:13790998-13791017 None:intergenic 55.0%
ATACCACAAGGCAGACCTCC+TGG + chr5_2:13790999-13791018 None:intergenic 55.0%
ACCACCAACTGGATCCCACA+AGG - chr5_2:13791965-13791984 Msa0758500:intron 55.0%
TTTCGTTGGTCACAGCGCAC+GGG - chr5_2:13792495-13792514 Msa0758500:CDS 55.0%
GCAGCTTTGCAACTGAGCTC+AGG + chr5_2:13795138-13795157 None:intergenic 55.0%
GCTGCAGATGGCACTAACAG+TGG - chr5_2:13795153-13795172 Msa0758500:CDS 55.0%
AGTGGATGGGGAGATACTGC+AGG - chr5_2:13795333-13795352 Msa0758500:intron 55.0%
AGTTCCAGACCCAGTGACCA+TGG - chr5_2:13795397-13795416 Msa0758500:CDS 55.0%
TTCTCCATGGTCACTGGGTC+TGG + chr5_2:13795404-13795423 None:intergenic 55.0%
!! CTTGGCTTGCCAGACATCGA+CGG - chr5_2:13795500-13795519 Msa0758500:intron 55.0%
AAGGTTAGGACTGCTGGCGA+AGG - chr5_2:13796204-13796223 Msa0758500:five_prime_UTR 55.0%
AGGTTAGGACTGCTGGCGAA+GGG - chr5_2:13796205-13796224 Msa0758500:five_prime_UTR 55.0%
CGTAGACCGCGACTTACAAG+AGG - chr5_2:13796269-13796288 Msa0758500:five_prime_UTR 55.0%
ACCACAAGGCAGACCTCCTG+GGG + chr5_2:13790997-13791016 None:intergenic 60.0%
AGCATCAGGCCCTGTGTGGA+TGG - chr5_2:13791484-13791503 Msa0758500:intron 60.0%
GCCTTGTGGGATCCAGTTGG+TGG + chr5_2:13791969-13791988 None:intergenic 60.0%
GGATGGGTCTTGGCTCAGGT+AGG - chr5_2:13792338-13792357 Msa0758500:intron 60.0%
! GGGTTGCCTTGGTAGCACGA+TGG - chr5_2:13792515-13792534 Msa0758500:CDS 60.0%
ACCCCAGGAGGTCTGCCTTG+TGG - chr5_2:13790993-13791012 Msa0758500:intron 65.0%
! TCACAGCGCACGGGTTGCCT+TGG - chr5_2:13792504-13792523 Msa0758500:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 13788060 13796363 13788060 ID=Msa0758500;Name=Msa0758500
chr5_2 mRNA 13788060 13796363 13788060 ID=Msa0758500-mRNA-1;Parent=Msa0758500;Name=Msa0758500-mRNA-1;_AED=0.24;_eAED=0.26;_QI=311|0.47|0.61|1|0.64|0.72|18|950|513
chr5_2 exon 13788060 13789112 13788060 ID=Msa0758500-mRNA-1:exon:6250;Parent=Msa0758500-mRNA-1
chr5_2 exon 13789190 13789308 13789190 ID=Msa0758500-mRNA-1:exon:6249;Parent=Msa0758500-mRNA-1
chr5_2 exon 13789641 13789694 13789641 ID=Msa0758500-mRNA-1:exon:6248;Parent=Msa0758500-mRNA-1
chr5_2 exon 13791663 13791740 13791663 ID=Msa0758500-mRNA-1:exon:6247;Parent=Msa0758500-mRNA-1
chr5_2 exon 13791854 13791913 13791854 ID=Msa0758500-mRNA-1:exon:6246;Parent=Msa0758500-mRNA-1
chr5_2 exon 13792068 13792179 13792068 ID=Msa0758500-mRNA-1:exon:6245;Parent=Msa0758500-mRNA-1
chr5_2 exon 13792393 13792565 13792393 ID=Msa0758500-mRNA-1:exon:6244;Parent=Msa0758500-mRNA-1
chr5_2 exon 13792655 13792795 13792655 ID=Msa0758500-mRNA-1:exon:6243;Parent=Msa0758500-mRNA-1
chr5_2 exon 13792888 13792952 13792888 ID=Msa0758500-mRNA-1:exon:6242;Parent=Msa0758500-mRNA-1
chr5_2 exon 13793409 13793496 13793409 ID=Msa0758500-mRNA-1:exon:6241;Parent=Msa0758500-mRNA-1
chr5_2 exon 13793821 13793940 13793821 ID=Msa0758500-mRNA-1:exon:6240;Parent=Msa0758500-mRNA-1
chr5_2 exon 13794030 13794149 13794030 ID=Msa0758500-mRNA-1:exon:6239;Parent=Msa0758500-mRNA-1
chr5_2 exon 13794178 13794256 13794178 ID=Msa0758500-mRNA-1:exon:6238;Parent=Msa0758500-mRNA-1
chr5_2 exon 13794960 13795008 13794960 ID=Msa0758500-mRNA-1:exon:6237;Parent=Msa0758500-mRNA-1
chr5_2 exon 13795139 13795250 13795139 ID=Msa0758500-mRNA-1:exon:6236;Parent=Msa0758500-mRNA-1
chr5_2 exon 13795378 13795461 13795378 ID=Msa0758500-mRNA-1:exon:6235;Parent=Msa0758500-mRNA-1
chr5_2 exon 13795929 13795986 13795929 ID=Msa0758500-mRNA-1:exon:6234;Parent=Msa0758500-mRNA-1
chr5_2 exon 13796126 13796363 13796126 ID=Msa0758500-mRNA-1:exon:6233;Parent=Msa0758500-mRNA-1
chr5_2 five_prime_UTR 13796126 13796363 13796126 ID=Msa0758500-mRNA-1:five_prime_utr;Parent=Msa0758500-mRNA-1
chr5_2 five_prime_UTR 13795929 13795986 13795929 ID=Msa0758500-mRNA-1:five_prime_utr;Parent=Msa0758500-mRNA-1
chr5_2 five_prime_UTR 13795447 13795461 13795447 ID=Msa0758500-mRNA-1:five_prime_utr;Parent=Msa0758500-mRNA-1
chr5_2 CDS 13795378 13795446 13795378 ID=Msa0758500-mRNA-1:cds;Parent=Msa0758500-mRNA-1
chr5_2 CDS 13795139 13795250 13795139 ID=Msa0758500-mRNA-1:cds;Parent=Msa0758500-mRNA-1
chr5_2 CDS 13794960 13795008 13794960 ID=Msa0758500-mRNA-1:cds;Parent=Msa0758500-mRNA-1
chr5_2 CDS 13794178 13794256 13794178 ID=Msa0758500-mRNA-1:cds;Parent=Msa0758500-mRNA-1
chr5_2 CDS 13794030 13794149 13794030 ID=Msa0758500-mRNA-1:cds;Parent=Msa0758500-mRNA-1
chr5_2 CDS 13793821 13793940 13793821 ID=Msa0758500-mRNA-1:cds;Parent=Msa0758500-mRNA-1
chr5_2 CDS 13793409 13793496 13793409 ID=Msa0758500-mRNA-1:cds;Parent=Msa0758500-mRNA-1
chr5_2 CDS 13792888 13792952 13792888 ID=Msa0758500-mRNA-1:cds;Parent=Msa0758500-mRNA-1
chr5_2 CDS 13792655 13792795 13792655 ID=Msa0758500-mRNA-1:cds;Parent=Msa0758500-mRNA-1
chr5_2 CDS 13792393 13792565 13792393 ID=Msa0758500-mRNA-1:cds;Parent=Msa0758500-mRNA-1
chr5_2 CDS 13792068 13792179 13792068 ID=Msa0758500-mRNA-1:cds;Parent=Msa0758500-mRNA-1
chr5_2 CDS 13791854 13791913 13791854 ID=Msa0758500-mRNA-1:cds;Parent=Msa0758500-mRNA-1
chr5_2 CDS 13791663 13791740 13791663 ID=Msa0758500-mRNA-1:cds;Parent=Msa0758500-mRNA-1
chr5_2 CDS 13789641 13789694 13789641 ID=Msa0758500-mRNA-1:cds;Parent=Msa0758500-mRNA-1
chr5_2 CDS 13789190 13789308 13789190 ID=Msa0758500-mRNA-1:cds;Parent=Msa0758500-mRNA-1
chr5_2 CDS 13789010 13789112 13789010 ID=Msa0758500-mRNA-1:cds;Parent=Msa0758500-mRNA-1
chr5_2 three_prime_UTR 13788060 13789009 13788060 ID=Msa0758500-mRNA-1:three_prime_utr;Parent=Msa0758500-mRNA-1
Gene Sequence

>Msa0758500

ATGCATTTTGTTGTACATGTACAAAAACTACTTGATCAATTTTCATGTGGAAATTACTATGCCTTGAAGGCAAGGAAACCATATACTATCACAAAACAGAGAGAAAAGTGGACAAATGAAGAACATAAGACGTTCCTTGAAGCTTTAAAGTTATACAGTCGAGCCTGGCGAAAAATCGAAGAACATGTCGATACAAAGACTGCTGTGCAGATTCGAAGTCGTGCTCAGAATATTCATCAGCGAAAAGAGGTTTTGGAGCAAATGGGCCATAAGCTTTCTGAAGAAGCTGAGAAATTAGATTACCAGCCCGCTAGTGGTGACCCATGGAATCCGAAGTCTGAAACTATGTCCAAGGTCATGTCTACATTGAAAGGTGTTCATAGGGTTTTGAAAGCAAATGGCACATTTATCTCGATAACTTTTGGCCAGGCGTCCTATAGCTTTGATTTCAAATCCTTTTTTCATGCAGTACTTGATTTAAGCGATACTTTCCTGAATAAATTAGGTGTTAGCAGAGAAAATGTTGATGATACAGCAGGTGCTGCTCAGATCTTTTTCATTATAATATATTCTCTTGGTTATGGAAAGTATCTTCATAGAAGACTCTTTTATTTGACCCCAGGAGGTCTGCCTTGTGGATCAGACATAATAGCATCAGGCCCTGTGTGGATGGAGTACATAGCCTTTCTAAAGTCATTGCCGGCTGCACATCCACAAGAAGAAACACATCAGATGACTGTTGTGAGGAAAGTCTATCAGAGGGCTATTATTACTCCTACCCATCACTTTGAACAACTTTGGAAAGACTATGATAGTTTTGAAAGTTCTGTTAGCCAGAAGTTGGCTAGAGGGCTTATATCCGAATATCAACCAAAATTTAATAGTGCGAGGGCAGTATACAGAGAACGGAAGAAGTTTTTTGATGAAATTGATTGGAATATGCTTGCTGTACCACCAACTGGATCCCACAAGGCAAATTTCTGTTCCTCTGCAAATGTTAATAATGTTGTGATCTTTATAGGATCTCTCACAAATTTGCAAGTGAAAATTTCAGGTAAAGAAAATGCACTTCTGATATGCAATCACAGGAGTGACATTGATTGGCTTATTGGATGGGTCTTGGCTCAGCGCACGGGTTGCCTTGGTAGCACGATGGCCATTATGAAGAAAGAATTTAAATACCTCCCTGTTATAGGTTGGTCAATGTGGTTTGCTGAATACTTATTTCTAGAAAGAAACTGGGCTAAAGATGAATCATCATTGAAGACTCTGGAAAAGCTCAGACCTCCCTCAATGATAGAACTGTTGATGTCTTATCTGAGTCTAATGATAAATGATACCCTGAGCTCAGTTGCAAAGCTGCAGATGGCACTAACAGTGGCTGATGCATTCCTTTCAGCACTTCCAGTGGATACTCCTTATGATGATTTTGAACCAAGGTTTAAGCAGTGGGGTTTTGAAAGTGGATGGGGAGATACTGCAGGAAGAGTGAAGGATACAATGAGAACTTTGTTAGAAGTACTCAAGTTCCAGACCCAGTGA
Protein sequence

>Msa0758500

MHFVVHVQKLLDQFSCGNYYALKARKPYTITKQREKWTNEEHKTFLEALKLYSRAWRKIEEHVDTKTAVQIRSRAQNIHQRKEVLEQMGHKLSEEAEKLDYQPASGDPWNPKSETMSKVMSTLKGVHRVLKANGTFISITFGQASYSFDFKSFFHAVLDLSDTFLNKLGVSRENVDDTAGAAQIFFIIIYSLGYGKYLHRRLFYLTPGGLPCGSDIIASGPVWMEYIAFLKSLPAAHPQEETHQMTVVRKVYQRAIITPTHHFEQLWKDYDSFESSVSQKLARGLISEYQPKFNSARAVYRERKKFFDEIDWNMLAVPPTGSHKANFCSSANVNNVVIFIGSLTNLQVKISGKENALLICNHRSDIDWLIGWVLAQRTGCLGSTMAIMKKEFKYLPVIGWSMWFAEYLFLERNWAKDESSLKTLEKLRPPSMIELLMSYLSLMINDTLSSVAKLQMALTVADAFLSALPVDTPYDDFEPRFKQWGFESGWGDTAGRVKDTMRTLLEVLKFQTQ*