Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760260 | XP_003612561.1 | 98.158 | 543 | 6 | 2 | 1 | 540 | 1 | 542 | 0.0 | 1091 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760260 | sp|P29057|HMDH1_HEVBR | 75.277 | 542 | 108 | 1 | 25 | 540 | 34 | 575 | 0.0 | 844 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760260 | G7K5G9 | 98.158 | 543 | 6 | 2 | 1 | 540 | 1 | 542 | 0.0 | 1091 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0760260 | Msa0760280 | 0.935942 | 3.828416e-97 | -8.615850e-47 |
| Msa0760260 | Msa0760310 | 0.915419 | 6.023136e-85 | -8.615850e-47 |
| Msa0760260 | Msa0760330 | 0.981208 | 4.944868e-152 | -8.615850e-47 |
| Msa0760260 | Msa0801680 | 0.806029 | 1.003291e-49 | -8.615850e-47 |
| Msa0760260 | Msa0840050 | 0.808252 | 3.392481e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760260 | MtrunA17_Chr5g0409021 | 98.158 | 543 | 6 | 2 | 1 | 540 | 1 | 542 | 0.0 | 1091 |
| Msa0760260 | MtrunA17_Chr5g0408991 | 98.158 | 543 | 6 | 2 | 1 | 540 | 1 | 542 | 0.0 | 1091 |
| Msa0760260 | MtrunA17_Chr5g0408981 | 98.158 | 543 | 6 | 2 | 1 | 540 | 1 | 542 | 0.0 | 1091 |
| Msa0760260 | MtrunA17_Chr5g0409011 | 98.158 | 543 | 6 | 2 | 1 | 540 | 1 | 542 | 0.0 | 1091 |
| Msa0760260 | MtrunA17_Chr5g0409001 | 97.974 | 543 | 7 | 2 | 1 | 540 | 1 | 542 | 0.0 | 1090 |
| Msa0760260 | MtrunA17_Chr5g0409031 | 92.364 | 550 | 32 | 3 | 1 | 540 | 1 | 550 | 0.0 | 1000 |
| Msa0760260 | MtrunA17_Chr5g0442831 | 90.146 | 548 | 43 | 5 | 1 | 540 | 1 | 545 | 0.0 | 999 |
| Msa0760260 | MtrunA17_Chr5g0407521 | 84.656 | 567 | 60 | 6 | 1 | 540 | 1 | 567 | 0.0 | 967 |
| Msa0760260 | MtrunA17_Chr8g0370001 | 77.798 | 545 | 97 | 6 | 20 | 540 | 39 | 583 | 0.0 | 862 |
| Msa0760260 | MtrunA17_Chr5g0440371 | 75.568 | 528 | 112 | 3 | 25 | 540 | 43 | 565 | 0.0 | 806 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760260 | AT1G76490.1 | 72.727 | 528 | 128 | 1 | 25 | 536 | 105 | 632 | 0.0 | 816 |
| Msa0760260 | AT2G17370.1 | 69.173 | 532 | 148 | 4 | 16 | 535 | 27 | 554 | 0.0 | 773 |
Find 165 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAATTTACTTGGTGTTAA+AGG | 0.164546 | 5_2:+16706848 | Msa0760260:CDS |
| GTGAATCCTCCTGCTTCTTT+TGG | 0.210539 | 5_2:-16705369 | None:intergenic |
| TTTGACTACGATTCTATATT+AGG | 0.222070 | 5_2:+16705856 | Msa0760260:CDS |
| TGTAAAGCTATTTATGTTTC+CGG | 0.222759 | 5_2:+16706015 | Msa0760260:CDS |
| TGGACTAAGATCAAGAATTT+TGG | 0.254758 | 5_2:+16707211 | Msa0760260:three_prime_UTR |
| ATGAGCATTTATTGAAAATA+TGG | 0.271946 | 5_2:+16707151 | Msa0760260:three_prime_UTR |
| TTTCCCGATATGGATGTTAT+TGG | 0.272380 | 5_2:+16706422 | Msa0760260:CDS |
| CGGCAAAGTCGCATACTAAA+TGG | 0.279738 | 5_2:-16707175 | None:intergenic |
| GGGAATATGAGTGAGGAATA+AGG | 0.285211 | 5_2:-16705124 | None:intergenic |
| TTTCAACTGAGAAGCTCTTT+TGG | 0.287869 | 5_2:-16706103 | None:intergenic |
| ATGGATGTTATTGGTATATC+TGG | 0.294760 | 5_2:+16706431 | Msa0760260:CDS |
| ACTTGTTGAAAGTGTGAGAT+AGG | 0.316097 | 5_2:-16706158 | None:intergenic |
| CAAGCGGTGGAGAGAGTTAC+TGG | 0.330166 | 5_2:+16705802 | Msa0760260:CDS |
| GAAATACAATAGATCGAATA+AGG | 0.331829 | 5_2:+16706997 | Msa0760260:CDS |
| CCGGTCCTTTGTTGCTCGAC+GGG | 0.332695 | 5_2:+16705929 | Msa0760260:CDS |
| TATTTATAGACAGAGTATTC+AGG | 0.335888 | 5_2:-16705145 | None:intergenic |
| GAAGACTAGTGTGGAGTCTT+TGG | 0.337986 | 5_2:+16706562 | Msa0760260:CDS |
| CAGATACCCGTGGGTGTTGC+CGG | 0.352024 | 5_2:+16705910 | Msa0760260:CDS |
| AATAGCTTTACAGCCTCTAT+TGG | 0.352070 | 5_2:-16706004 | None:intergenic |
| AGACTCCAGGAGCAAATTCC+AGG | 0.354489 | 5_2:+16706882 | Msa0760260:CDS |
| TTCGGTGGTGGTAGCTTCTT+CGG | 0.359048 | 5_2:-16705649 | None:intergenic |
| TATTGTTTCTGCAATTTACT+TGG | 0.362082 | 5_2:+16706664 | Msa0760260:CDS |
| AGAAAGCTGCGGCAGTGAAT+TGG | 0.369757 | 5_2:+16706471 | Msa0760260:CDS |
| TCGCCTACTTTCTTCTCAAC+AGG | 0.377563 | 5_2:+16705443 | Msa0760260:CDS |
| TCAGCCATGGCTGGTGCTCT+TGG | 0.377924 | 5_2:+16706617 | Msa0760260:CDS |
| GGCAACCACCGAAGGTTGTT+TGG | 0.379682 | 5_2:+16705972 | Msa0760260:CDS |
| GTCTACCTTATCACTTTCTT+CGG | 0.381652 | 5_2:+16705553 | Msa0760260:CDS |
| AGTTGCCTGGAATTTGCTCC+TGG | 0.383258 | 5_2:-16706887 | None:intergenic |
| AACATCCATATCGGGAAAAT+CGG | 0.385940 | 5_2:-16706417 | None:intergenic |
| GCCGACGTGCAGCAAATATT+AGG | 0.386388 | 5_2:+16705776 | Msa0760260:CDS |
| ACAGAGTATTAAAGCAACTA+TGG | 0.387120 | 5_2:+16706292 | Msa0760260:CDS |
| AAAGGAGTTCAGCTCGGTTC+AGG | 0.388651 | 5_2:-16705226 | None:intergenic |
| TATACCAATAACATCCATAT+CGG | 0.391041 | 5_2:-16706426 | None:intergenic |
| GTTGTCAGTGCAGTGGTGTC+AGG | 0.395284 | 5_2:+16705712 | Msa0760260:CDS |
| CTTCTTGTTCATCGTAATGA+AGG | 0.402904 | 5_2:-16705588 | None:intergenic |
| ATAGAAAGAAACTTCAATAT+AGG | 0.403284 | 5_2:+16707110 | Msa0760260:three_prime_UTR |
| GTAGCTGCTTCAGTCCTTGC+AGG | 0.405330 | 5_2:+16706920 | Msa0760260:CDS |
| TGTTCAACGGGCGATGCAAT+GGG | 0.419261 | 5_2:+16706344 | Msa0760260:CDS |
| CACAACGGCGGAAGCACCAC+CGG | 0.431698 | 5_2:-16706034 | None:intergenic |
| CTCATGTCTGCAATTGCAGC+CGG | 0.440156 | 5_2:+16706953 | Msa0760260:CDS |
| GGAATATGAGTGAGGAATAA+GGG | 0.443764 | 5_2:-16705123 | None:intergenic |
| ACAAGATTTACTTGTTCAAC+GGG | 0.445932 | 5_2:+16706332 | Msa0760260:CDS |
| AGGAGCAAATTCCAGGCAAC+TGG | 0.448129 | 5_2:+16706889 | Msa0760260:CDS |
| TACTATAGTTGCCAGTTGCC+TGG | 0.450825 | 5_2:-16706900 | None:intergenic |
| GCCGGTCCTTTGTTGCTCGA+CGG | 0.452645 | 5_2:+16705928 | Msa0760260:CDS |
| CATATAAATGTAGATACTAT+AGG | 0.459944 | 5_2:+16707049 | Msa0760260:three_prime_UTR |
| AAGGTCCTTTCCGTCATTCA+CGG | 0.465602 | 5_2:-16706747 | None:intergenic |
| TCAGCTTGTCTAAATTTACT+TGG | 0.470739 | 5_2:+16706839 | Msa0760260:CDS |
| CACAAGATTTACTTGTTCAA+CGG | 0.470833 | 5_2:+16706331 | Msa0760260:CDS |
| TCCAGCTCATGAAGCAACTT+TGG | 0.470851 | 5_2:-16707026 | None:intergenic |
| TCCTACTGTGCCCACCTCAA+TGG | 0.473062 | 5_2:-16706792 | None:intergenic |
| TCTGCAATTTACTTGGCTAC+AGG | 0.474139 | 5_2:+16706671 | Msa0760260:CDS |
| TACTCGCTTGAATCCAAGCT+TGG | 0.474728 | 5_2:+16705748 | Msa0760260:CDS |
| ATTGAGGTGGGCACAGTAGG+AGG | 0.475464 | 5_2:+16706794 | Msa0760260:CDS |
| ACCAAAGTTGCTTCATGAGC+TGG | 0.476922 | 5_2:+16707025 | Msa0760260:exon |
| TTGTTCAACGGGCGATGCAA+TGG | 0.476991 | 5_2:+16706343 | Msa0760260:CDS |
| AGTATTAAAGCAACTATGGC+TGG | 0.477370 | 5_2:+16706296 | Msa0760260:CDS |
| AAGGAGTTCAGCTCGGTTCA+GGG | 0.478998 | 5_2:-16705225 | None:intergenic |
| TTCAGGGGATGATTGATGAT+TGG | 0.479107 | 5_2:-16705209 | None:intergenic |
| GCCATGGCTGGTGCTCTTGG+CGG | 0.483639 | 5_2:+16706620 | Msa0760260:CDS |
| GCGGAGTTGAATCTTACAAC+GGG | 0.487921 | 5_2:-16706081 | None:intergenic |
| GACAACCTCCTCGTCTTCCA+TGG | 0.491588 | 5_2:-16705695 | None:intergenic |
| GTGAATTGGATTGAAGGGAG+AGG | 0.493977 | 5_2:+16706485 | Msa0760260:CDS |
| GCTTGCAACCAAACAACCTT+CGG | 0.498750 | 5_2:-16705980 | None:intergenic |
| CGTGGAGAGGTGTAGAGGTT+CGG | 0.500136 | 5_2:-16705480 | None:intergenic |
| CAAAGGACCGGCAACACCCA+CGG | 0.504085 | 5_2:-16705917 | None:intergenic |
| TCTCTCTGGTTATTATGTGA+AGG | 0.504346 | 5_2:-16705286 | None:intergenic |
| ATTTATAGACAGAGTATTCA+GGG | 0.504848 | 5_2:-16705144 | None:intergenic |
| CTTCGGCAAGACACCTTGAG+TGG | 0.505421 | 5_2:-16705632 | None:intergenic |
| TGAGGTGGGCACAGTAGGAG+GGG | 0.507780 | 5_2:+16706796 | Msa0760260:CDS |
| GTCATTCACGGCTTCCATCA+TGG | 0.509060 | 5_2:-16706735 | None:intergenic |
| GAAGAAGAACCAAAAGAAGC+AGG | 0.514129 | 5_2:+16705360 | Msa0760260:CDS |
| TTGAGGTGGGCACAGTAGGA+GGG | 0.514782 | 5_2:+16706795 | Msa0760260:CDS |
| CACTATGCCTTCCATTGAGG+TGG | 0.515478 | 5_2:+16706781 | Msa0760260:CDS |
| GAACTTTCAACATTCTGAGC+AGG | 0.515798 | 5_2:-16706701 | None:intergenic |
| TACAACACAATTAAAAGTAC+AGG | 0.516480 | 5_2:-16707390 | None:intergenic |
| GTTACTGGAAGGTCACTTGA+AGG | 0.516512 | 5_2:+16705817 | Msa0760260:CDS |
| GAGAGAAGAGAAGAGAGAGA+AGG | 0.526893 | 5_2:+16707298 | Msa0760260:three_prime_UTR |
| GCGGCAGTGAATTGGATTGA+AGG | 0.530179 | 5_2:+16706479 | Msa0760260:CDS |
| GGGATGAACATGGTATCAAA+AGG | 0.530588 | 5_2:+16706365 | Msa0760260:CDS |
| TCCGCCGTTGTGCTCCGCGA+CGG | 0.530752 | 5_2:+16706045 | Msa0760260:CDS |
| GCCGCCAAGAGCACCAGCCA+TGG | 0.530980 | 5_2:-16706621 | None:intergenic |
| CAGTAACTCTCTCCACCGCT+TGG | 0.534084 | 5_2:-16705801 | None:intergenic |
| CTTACTGGTTCAGCCATGGC+TGG | 0.534747 | 5_2:+16706608 | Msa0760260:CDS |
| AAAGGACCGGCAACACCCAC+GGG | 0.536404 | 5_2:-16705916 | None:intergenic |
| GCATAGTGACTGAGATATGA+AGG | 0.538116 | 5_2:-16706766 | None:intergenic |
| GAGAAACACTTGTGTGGACC+AGG | 0.538771 | 5_2:-16707360 | None:intergenic |
| TCGATCTATTGTATTTCATG+TGG | 0.540574 | 5_2:-16706991 | None:intergenic |
| CAGCCATGGCTGAACCAGTA+AGG | 0.543116 | 5_2:-16706607 | None:intergenic |
| ATACCAATAACATCCATATC+GGG | 0.544400 | 5_2:-16706425 | None:intergenic |
| TGAATTGGATTGAAGGGAGA+GGG | 0.544400 | 5_2:+16706486 | Msa0760260:CDS |
| TTGGTTGCAAGCACCAATAG+AGG | 0.544821 | 5_2:+16705991 | Msa0760260:CDS |
| GGTGTGTGAGGCTGTAATAA+AGG | 0.545187 | 5_2:+16706517 | Msa0760260:CDS |
| TCCATTGAGGTGGGCACAGT+AGG | 0.547051 | 5_2:+16706791 | Msa0760260:CDS |
| CCACCTGTTGAGAAGAAAGT+AGG | 0.548746 | 5_2:-16705446 | None:intergenic |
| CCCGTCGAGCAACAAAGGAC+CGG | 0.551690 | 5_2:-16705929 | None:intergenic |
| GGCTTTGTGCAGATACCCGT+GGG | 0.558873 | 5_2:+16705901 | Msa0760260:CDS |
| CTTGTTGAAAGTGTGAGATA+GGG | 0.559419 | 5_2:-16706157 | None:intergenic |
| CGATGCAATGGGGATGAACA+TGG | 0.560850 | 5_2:+16706355 | Msa0760260:CDS |
| ATGATGGAAGCCGTGAATGA+CGG | 0.562542 | 5_2:+16706737 | Msa0760260:CDS |
| CAACCTTCGGTGGTTGCCAT+CGG | 0.562844 | 5_2:-16705967 | None:intergenic |
| TCTCAGAGATTGTGAGGACG+TGG | 0.566190 | 5_2:-16705498 | None:intergenic |
| TTCATCGTAATGAAGGATGA+AGG | 0.570197 | 5_2:-16705581 | None:intergenic |
| GTAGACAAAGGAAGCGATGA+GGG | 0.571349 | 5_2:-16705536 | None:intergenic |
| CAATGCCGAAGAAAGTGATA+AGG | 0.571966 | 5_2:-16705558 | None:intergenic |
| TTCTCACTGTATGACCATGA+TGG | 0.576680 | 5_2:+16706721 | Msa0760260:CDS |
| GTGCCGATGGCAACCACCGA+AGG | 0.578946 | 5_2:+16705964 | Msa0760260:CDS |
| GAAAGTGATAAGGTAGACAA+AGG | 0.579162 | 5_2:-16705548 | None:intergenic |
| TCATGTCTGCAATTGCAGCC+GGG | 0.579236 | 5_2:+16706954 | Msa0760260:CDS |
| AGTCACTATGCCTTCCATTG+AGG | 0.579598 | 5_2:+16706778 | Msa0760260:CDS |
| CGAGAATCTCAGAGATTGTG+AGG | 0.579813 | 5_2:-16705504 | None:intergenic |
| CGGCAGTGAATTGGATTGAA+GGG | 0.579892 | 5_2:+16706480 | Msa0760260:CDS |
| GGCTGTAATAAAGGAAGAGG+TGG | 0.590912 | 5_2:+16706526 | Msa0760260:CDS |
| CCTACTTTCTTCTCAACAGG+TGG | 0.592173 | 5_2:+16705446 | Msa0760260:CDS |
| GGAGCTAGTAAAGAGACTCC+AGG | 0.592509 | 5_2:+16706869 | Msa0760260:CDS |
| TCATTCCCGTCGAGCAACAA+AGG | 0.592806 | 5_2:-16705934 | None:intergenic |
| AAACCTTACTGGTTCAGCCA+TGG | 0.593436 | 5_2:+16706604 | Msa0760260:CDS |
| GGTATCTGCACAAAGCCTAT+CGG | 0.594636 | 5_2:-16705895 | None:intergenic |
| ACGTCGGCAATCTCCAAGCT+TGG | 0.594876 | 5_2:-16705761 | None:intergenic |
| GAGGTGGGCACAGTAGGAGG+GGG | 0.595689 | 5_2:+16706797 | Msa0760260:CDS |
| TGCAACCAAACAACCTTCGG+TGG | 0.597240 | 5_2:-16705977 | None:intergenic |
| CTTGAAGGTCTACCGATGGA+AGG | 0.597862 | 5_2:+16705832 | Msa0760260:CDS |
| GTCACTTGAAGGTCTACCGA+TGG | 0.600375 | 5_2:+16705828 | Msa0760260:CDS |
| AGGCTTTGTGCAGATACCCG+TGG | 0.602817 | 5_2:+16705900 | Msa0760260:CDS |
| TTGGATTCAAGCGAGTAAGA+TGG | 0.603959 | 5_2:-16705742 | None:intergenic |
| CAGTGTTGCGAGATGCCGAT+AGG | 0.609276 | 5_2:+16705880 | Msa0760260:CDS |
| AGGAGTTCAGCTCGGTTCAG+GGG | 0.609892 | 5_2:-16705224 | None:intergenic |
| CATTCCGTCGCGGAGCACAA+CGG | 0.610168 | 5_2:-16706049 | None:intergenic |
| GAATGAGTACACGGTGCCGA+TGG | 0.611062 | 5_2:+16705951 | Msa0760260:CDS |
| ACTGTGCCCACCTCAATGGA+AGG | 0.611639 | 5_2:-16706788 | None:intergenic |
| TCCTAATATTTGCTGCACGT+CGG | 0.613799 | 5_2:-16705777 | None:intergenic |
| TGAGGCTGTAATAAAGGAAG+AGG | 0.613924 | 5_2:+16706523 | Msa0760260:CDS |
| TGAGTGAGAGCTCTCCTGCA+AGG | 0.619208 | 5_2:-16706934 | None:intergenic |
| GGAAGCCGTGAATGACGGAA+AGG | 0.619681 | 5_2:+16706742 | Msa0760260:CDS |
| GGCGGAGTTGAATCTTACAA+CGG | 0.622253 | 5_2:-16706082 | None:intergenic |
| TTTGCCGAGAAAATCTTGTG+TGG | 0.629653 | 5_2:+16707191 | Msa0760260:three_prime_UTR |
| ACTATGCCTTCCATTGAGGT+GGG | 0.631117 | 5_2:+16706782 | Msa0760260:CDS |
| GAGATTGTGAGGACGTGGAG+AGG | 0.633078 | 5_2:-16705493 | None:intergenic |
| GAGGACGTGGAGAGGTGTAG+AGG | 0.634951 | 5_2:-16705485 | None:intergenic |
| TCGTAGTCAAAACCTTCCAT+CGG | 0.635128 | 5_2:-16705844 | None:intergenic |
| CGAGGAGGTTGTCAGTGCAG+TGG | 0.639217 | 5_2:+16705705 | Msa0760260:CDS |
| AATGAACTCGTGAACAACGA+GGG | 0.639706 | 5_2:-16705036 | None:intergenic |
| AAAGCTATTTATGTTTCCGG+TGG | 0.645691 | 5_2:+16706018 | Msa0760260:CDS |
| GAAGAACCAAAAGAAGCAGG+AGG | 0.646116 | 5_2:+16705363 | Msa0760260:CDS |
| CGGTGGAGAGAGTTACTGGA+AGG | 0.646441 | 5_2:+16705806 | Msa0760260:CDS |
| AAGAACAAAGGAGTTCAGCT+CGG | 0.647208 | 5_2:-16705232 | None:intergenic |
| AGTTATGTCCATGGAAGACG+AGG | 0.649583 | 5_2:+16705687 | Msa0760260:CDS |
| AAATATTAGGAACCAAGCGG+TGG | 0.657334 | 5_2:+16705789 | Msa0760260:CDS |
| GTTGAGAAGAAAGTAGGCGA+CGG | 0.659806 | 5_2:-16705440 | None:intergenic |
| AGGGAAATCAGTGGTGTGTG+AGG | 0.661214 | 5_2:+16706505 | Msa0760260:CDS |
| GGTAGACAAAGGAAGCGATG+AGG | 0.674346 | 5_2:-16705537 | None:intergenic |
| TAATGAACTCGTGAACAACG+AGG | 0.675719 | 5_2:-16705037 | None:intergenic |
| CGGAGTTGAATCTTACAACG+GGG | 0.676491 | 5_2:-16706080 | None:intergenic |
| GAAAGTGCTGAAGACTAGTG+TGG | 0.677484 | 5_2:+16706553 | Msa0760260:CDS |
| TGAAGGGAGAGGGAAATCAG+TGG | 0.677523 | 5_2:+16706496 | Msa0760260:CDS |
| TTGTTCGGACAAGAAAGCTG+CGG | 0.678327 | 5_2:+16706460 | Msa0760260:CDS |
| TCCGTCGCGGAGCACAACGG+CGG | 0.678366 | 5_2:-16706046 | None:intergenic |
| GTTCAACGGGCGATGCAATG+GGG | 0.689087 | 5_2:+16706345 | Msa0760260:CDS |
| TATGTCCATGGAAGACGAGG+AGG | 0.690419 | 5_2:+16705690 | Msa0760260:CDS |
| GTATTCAGGGAATATGAGTG+AGG | 0.692268 | 5_2:-16705131 | None:intergenic |
| GCTCGACGGGAATGAGTACA+CGG | 0.696837 | 5_2:+16705942 | Msa0760260:CDS |
| AGCAAATATTAGGAACCAAG+CGG | 0.709396 | 5_2:+16705786 | Msa0760260:CDS |
| AAAGTCGAGAAACACTTGTG+TGG | 0.718230 | 5_2:-16707366 | None:intergenic |
| GGGCTCTGGTCATTCCGTCG+CGG | 0.721794 | 5_2:-16706059 | None:intergenic |
| GGAGTTGAATCTTACAACGG+GGG | 0.724389 | 5_2:-16706079 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAAGAAAGAACAA+AGG | - | chr5_2:16705247-16705266 | None:intergenic | 15.0% |
| !! | AGATAAAAGGTAAAATATAT+AGG | - | chr5_2:16706210-16706229 | None:intergenic | 15.0% |
| !!! | CTAGATGATAACATATTTTA+TGG | - | chr5_2:16705000-16705019 | None:intergenic | 20.0% |
| !!! | TTAACAAATGTTGTTTTCTT+TGG | + | chr5_2:16705406-16705425 | Msa0760260:CDS | 20.0% |
| !! | GTAATTTCAACAAAGATAAA+AGG | - | chr5_2:16706223-16706242 | None:intergenic | 20.0% |
| !! | GGATGATTGATTATATATTT+AGG | + | chr5_2:16706249-16706268 | Msa0760260:intron | 20.0% |
| !!! | TATATCTGGAAATTTTTGTT+CGG | + | chr5_2:16706445-16706464 | Msa0760260:CDS | 20.0% |
| !! | CATATAAATGTAGATACTAT+AGG | + | chr5_2:16707049-16707068 | Msa0760260:three_prime_UTR | 20.0% |
| !! | ATAGAAAGAAACTTCAATAT+AGG | + | chr5_2:16707110-16707129 | Msa0760260:three_prime_UTR | 20.0% |
| !! | ATGAGCATTTATTGAAAATA+TGG | + | chr5_2:16707151-16707170 | Msa0760260:three_prime_UTR | 20.0% |
| !! | ATTTATAGACAGAGTATTCA+GGG | - | chr5_2:16705147-16705166 | None:intergenic | 25.0% |
| !! | TATTTATAGACAGAGTATTC+AGG | - | chr5_2:16705148-16705167 | None:intergenic | 25.0% |
| !!! | ACTTTTTGGTCAGATATTTT+CGG | - | chr5_2:16705670-16705689 | None:intergenic | 25.0% |
| ! | TTTGACTACGATTCTATATT+AGG | + | chr5_2:16705856-16705875 | Msa0760260:CDS | 25.0% |
| ! | TGTAAAGCTATTTATGTTTC+CGG | + | chr5_2:16706015-16706034 | Msa0760260:CDS | 25.0% |
| ! | CTTTGTTGAAATTACTCATT+TGG | + | chr5_2:16706228-16706247 | Msa0760260:intron | 25.0% |
| ! | TATACCAATAACATCCATAT+CGG | - | chr5_2:16706429-16706448 | None:intergenic | 25.0% |
| !!! | TATTGTTTCTGCAATTTACT+TGG | + | chr5_2:16706664-16706683 | Msa0760260:CDS | 25.0% |
| !!! | CTAAATTTACTTGGTGTTAA+AGG | + | chr5_2:16706848-16706867 | Msa0760260:CDS | 25.0% |
| ! | GAAATACAATAGATCGAATA+AGG | + | chr5_2:16706997-16707016 | Msa0760260:CDS | 25.0% |
| !!! | TAAGATCAAGAATTTTGGTT+TGG | + | chr5_2:16707216-16707235 | Msa0760260:three_prime_UTR | 25.0% |
| !! | TGTGATCAAACCAAAATTTT+TGG | + | chr5_2:16707336-16707355 | Msa0760260:three_prime_UTR | 25.0% |
| !! | TACAACACAATTAAAAGTAC+AGG | - | chr5_2:16707393-16707412 | None:intergenic | 25.0% |
| ! | ACAGAGTATTAAAGCAACTA+TGG | + | chr5_2:16706292-16706311 | Msa0760260:CDS | 30.0% |
| CACAAGATTTACTTGTTCAA+CGG | + | chr5_2:16706331-16706350 | Msa0760260:CDS | 30.0% | |
| ACAAGATTTACTTGTTCAAC+GGG | + | chr5_2:16706332-16706351 | Msa0760260:CDS | 30.0% | |
| ATACCAATAACATCCATATC+GGG | - | chr5_2:16706428-16706447 | None:intergenic | 30.0% | |
| ATGGATGTTATTGGTATATC+TGG | + | chr5_2:16706431-16706450 | Msa0760260:CDS | 30.0% | |
| AACATGCTAAAAAACCTTAC+TGG | + | chr5_2:16706593-16706612 | Msa0760260:CDS | 30.0% | |
| TCAGCTTGTCTAAATTTACT+TGG | + | chr5_2:16706839-16706858 | Msa0760260:CDS | 30.0% | |
| TCGATCTATTGTATTTCATG+TGG | - | chr5_2:16706994-16707013 | None:intergenic | 30.0% | |
| ! | TGGACTAAGATCAAGAATTT+TGG | + | chr5_2:16707211-16707230 | Msa0760260:three_prime_UTR | 30.0% |
| GGAATATGAGTGAGGAATAA+GGG | - | chr5_2:16705126-16705145 | None:intergenic | 35.0% | |
| TCTCTCTGGTTATTATGTGA+AGG | - | chr5_2:16705289-16705308 | None:intergenic | 35.0% | |
| GAAAGTGATAAGGTAGACAA+AGG | - | chr5_2:16705551-16705570 | None:intergenic | 35.0% | |
| GTCTACCTTATCACTTTCTT+CGG | + | chr5_2:16705553-16705572 | Msa0760260:CDS | 35.0% | |
| TTCATCGTAATGAAGGATGA+AGG | - | chr5_2:16705584-16705603 | None:intergenic | 35.0% | |
| CTTCTTGTTCATCGTAATGA+AGG | - | chr5_2:16705591-16705610 | None:intergenic | 35.0% | |
| ! | TTTTGGTCAGATATTTTCGG+TGG | - | chr5_2:16705667-16705686 | None:intergenic | 35.0% |
| TGACCAAAAAGTTATGTCCA+TGG | + | chr5_2:16705678-16705697 | Msa0760260:CDS | 35.0% | |
| ! | CTTCCATGGACATAACTTTT+TGG | - | chr5_2:16705684-16705703 | None:intergenic | 35.0% |
| AGCAAATATTAGGAACCAAG+CGG | + | chr5_2:16705786-16705805 | Msa0760260:CDS | 35.0% | |
| ! | AATAGCTTTACAGCCTCTAT+TGG | - | chr5_2:16706007-16706026 | None:intergenic | 35.0% |
| AAAGCTATTTATGTTTCCGG+TGG | + | chr5_2:16706018-16706037 | Msa0760260:CDS | 35.0% | |
| ! | TTTCAACTGAGAAGCTCTTT+TGG | - | chr5_2:16706106-16706125 | None:intergenic | 35.0% |
| !! | GATAGGGCATCAAAATTTTG+AGG | - | chr5_2:16706144-16706163 | None:intergenic | 35.0% |
| ! | CTTGTTGAAAGTGTGAGATA+GGG | - | chr5_2:16706160-16706179 | None:intergenic | 35.0% |
| ! | ACTTGTTGAAAGTGTGAGAT+AGG | - | chr5_2:16706161-16706180 | None:intergenic | 35.0% |
| AGTATTAAAGCAACTATGGC+TGG | + | chr5_2:16706296-16706315 | Msa0760260:CDS | 35.0% | |
| AACATCCATATCGGGAAAAT+CGG | - | chr5_2:16706420-16706439 | None:intergenic | 35.0% | |
| TTTCCCGATATGGATGTTAT+TGG | + | chr5_2:16706422-16706441 | Msa0760260:CDS | 35.0% | |
| ! | TAGTCCACACAAGATTTTCT+CGG | - | chr5_2:16707198-16707217 | None:intergenic | 35.0% |
| !!! | CAAACCAAAATTTTTGGTCC+TGG | + | chr5_2:16707342-16707361 | Msa0760260:three_prime_UTR | 35.0% |
| AATGAACTCGTGAACAACGA+GGG | - | chr5_2:16705039-16705058 | None:intergenic | 40.0% | |
| TAATGAACTCGTGAACAACG+AGG | - | chr5_2:16705040-16705059 | None:intergenic | 40.0% | |
| GGGAATATGAGTGAGGAATA+AGG | - | chr5_2:16705127-16705146 | None:intergenic | 40.0% | |
| GTATTCAGGGAATATGAGTG+AGG | - | chr5_2:16705134-16705153 | None:intergenic | 40.0% | |
| ! | TTCAGGGGATGATTGATGAT+TGG | - | chr5_2:16705212-16705231 | None:intergenic | 40.0% |
| AAGAACAAAGGAGTTCAGCT+CGG | - | chr5_2:16705235-16705254 | None:intergenic | 40.0% | |
| GAAGAAGAACCAAAAGAAGC+AGG | + | chr5_2:16705360-16705379 | Msa0760260:CDS | 40.0% | |
| CAATGCCGAAGAAAGTGATA+AGG | - | chr5_2:16705561-16705580 | None:intergenic | 40.0% | |
| ATTGCTGCAAAAACCACTCA+AGG | + | chr5_2:16705619-16705638 | Msa0760260:CDS | 40.0% | |
| TTGGATTCAAGCGAGTAAGA+TGG | - | chr5_2:16705745-16705764 | None:intergenic | 40.0% | |
| ! | TCCTAATATTTGCTGCACGT+CGG | - | chr5_2:16705780-16705799 | None:intergenic | 40.0% |
| AAATATTAGGAACCAAGCGG+TGG | + | chr5_2:16705789-16705808 | Msa0760260:CDS | 40.0% | |
| TCGTAGTCAAAACCTTCCAT+CGG | - | chr5_2:16705847-16705866 | None:intergenic | 40.0% | |
| GGGATGAACATGGTATCAAA+AGG | + | chr5_2:16706365-16706384 | Msa0760260:CDS | 40.0% | |
| !! | TCAAACCGATTTTCCCGATA+TGG | + | chr5_2:16706412-16706431 | Msa0760260:CDS | 40.0% |
| TGAATTGGATTGAAGGGAGA+GGG | + | chr5_2:16706486-16706505 | Msa0760260:CDS | 40.0% | |
| TGAGGCTGTAATAAAGGAAG+AGG | + | chr5_2:16706523-16706542 | Msa0760260:CDS | 40.0% | |
| TCTGCAATTTACTTGGCTAC+AGG | + | chr5_2:16706671-16706690 | Msa0760260:CDS | 40.0% | |
| GAACTTTCAACATTCTGAGC+AGG | - | chr5_2:16706704-16706723 | None:intergenic | 40.0% | |
| TTCTCACTGTATGACCATGA+TGG | + | chr5_2:16706721-16706740 | Msa0760260:CDS | 40.0% | |
| GCATAGTGACTGAGATATGA+AGG | - | chr5_2:16706769-16706788 | None:intergenic | 40.0% | |
| TTTGCCGAGAAAATCTTGTG+TGG | + | chr5_2:16707191-16707210 | Msa0760260:three_prime_UTR | 40.0% | |
| ! | TGGACCAGGACCAAAAATTT+TGG | - | chr5_2:16707349-16707368 | None:intergenic | 40.0% |
| AAAGTCGAGAAACACTTGTG+TGG | - | chr5_2:16707369-16707388 | None:intergenic | 40.0% | |
| GAGAGAGAGAGAGAGAGAAA+TGG | + | chr5_2:16705309-16705328 | Msa0760260:exon | 45.0% | |
| GAAGAACCAAAAGAAGCAGG+AGG | + | chr5_2:16705363-16705382 | Msa0760260:CDS | 45.0% | |
| ! | GTGAATCCTCCTGCTTCTTT+TGG | - | chr5_2:16705372-16705391 | None:intergenic | 45.0% |
| GTTGAGAAGAAAGTAGGCGA+CGG | - | chr5_2:16705443-16705462 | None:intergenic | 45.0% | |
| TCGCCTACTTTCTTCTCAAC+AGG | + | chr5_2:16705443-16705462 | Msa0760260:CDS | 45.0% | |
| CCACCTGTTGAGAAGAAAGT+AGG | - | chr5_2:16705449-16705468 | None:intergenic | 45.0% | |
| CCTACTTTCTTCTCAACAGG+TGG | + | chr5_2:16705446-16705465 | Msa0760260:CDS | 45.0% | |
| CGAGAATCTCAGAGATTGTG+AGG | - | chr5_2:16705507-16705526 | None:intergenic | 45.0% | |
| GTAGACAAAGGAAGCGATGA+GGG | - | chr5_2:16705539-16705558 | None:intergenic | 45.0% | |
| ! | TGGTCAGATATTTTCGGTGG+TGG | - | chr5_2:16705664-16705683 | None:intergenic | 45.0% |
| AGTTATGTCCATGGAAGACG+AGG | + | chr5_2:16705687-16705706 | Msa0760260:CDS | 45.0% | |
| TACTCGCTTGAATCCAAGCT+TGG | + | chr5_2:16705748-16705767 | Msa0760260:CDS | 45.0% | |
| GTTACTGGAAGGTCACTTGA+AGG | + | chr5_2:16705817-16705836 | Msa0760260:CDS | 45.0% | |
| GGTATCTGCACAAAGCCTAT+CGG | - | chr5_2:16705898-16705917 | None:intergenic | 45.0% | |
| GCTTGCAACCAAACAACCTT+CGG | - | chr5_2:16705983-16706002 | None:intergenic | 45.0% | |
| TTGGTTGCAAGCACCAATAG+AGG | + | chr5_2:16705991-16706010 | Msa0760260:CDS | 45.0% | |
| GGAGTTGAATCTTACAACGG+GGG | - | chr5_2:16706082-16706101 | None:intergenic | 45.0% | |
| CGGAGTTGAATCTTACAACG+GGG | - | chr5_2:16706083-16706102 | None:intergenic | 45.0% | |
| GCGGAGTTGAATCTTACAAC+GGG | - | chr5_2:16706084-16706103 | None:intergenic | 45.0% | |
| GGCGGAGTTGAATCTTACAA+CGG | - | chr5_2:16706085-16706104 | None:intergenic | 45.0% | |
| ! | CAACTGAGAAGCTCTTTTGG+CGG | - | chr5_2:16706103-16706122 | None:intergenic | 45.0% |
| TTGTTCGGACAAGAAAGCTG+CGG | + | chr5_2:16706460-16706479 | Msa0760260:CDS | 45.0% | |
| CGGCAGTGAATTGGATTGAA+GGG | + | chr5_2:16706480-16706499 | Msa0760260:CDS | 45.0% | |
| GTGAATTGGATTGAAGGGAG+AGG | + | chr5_2:16706485-16706504 | Msa0760260:CDS | 45.0% | |
| GGTGTGTGAGGCTGTAATAA+AGG | + | chr5_2:16706517-16706536 | Msa0760260:CDS | 45.0% | |
| GGCTGTAATAAAGGAAGAGG+TGG | + | chr5_2:16706526-16706545 | Msa0760260:CDS | 45.0% | |
| !! | GAAAGTGCTGAAGACTAGTG+TGG | + | chr5_2:16706553-16706572 | Msa0760260:CDS | 45.0% |
| GAAGACTAGTGTGGAGTCTT+TGG | + | chr5_2:16706562-16706581 | Msa0760260:CDS | 45.0% | |
| !! | AAACCTTACTGGTTCAGCCA+TGG | + | chr5_2:16706604-16706623 | Msa0760260:CDS | 45.0% |
| ! | ATGATGGAAGCCGTGAATGA+CGG | + | chr5_2:16706737-16706756 | Msa0760260:CDS | 45.0% |
| AAGGTCCTTTCCGTCATTCA+CGG | - | chr5_2:16706750-16706769 | None:intergenic | 45.0% | |
| AGTCACTATGCCTTCCATTG+AGG | + | chr5_2:16706778-16706797 | Msa0760260:CDS | 45.0% | |
| ACTATGCCTTCCATTGAGGT+GGG | + | chr5_2:16706782-16706801 | Msa0760260:CDS | 45.0% | |
| TACTATAGTTGCCAGTTGCC+TGG | - | chr5_2:16706903-16706922 | None:intergenic | 45.0% | |
| ! | GTGGCTTTTAACAAGTTGCC+CGG | - | chr5_2:16706975-16706994 | None:intergenic | 45.0% |
| ACCAAAGTTGCTTCATGAGC+TGG | + | chr5_2:16707025-16707044 | Msa0760260:exon | 45.0% | |
| TCCAGCTCATGAAGCAACTT+TGG | - | chr5_2:16707029-16707048 | None:intergenic | 45.0% | |
| CGGCAAAGTCGCATACTAAA+TGG | - | chr5_2:16707178-16707197 | None:intergenic | 45.0% | |
| GAGAGAAGAGAAGAGAGAGA+AGG | + | chr5_2:16707298-16707317 | Msa0760260:three_prime_UTR | 45.0% | |
| !!! | AAAATTTAATGTTATTTTTT+TGG | - | chr5_2:16705096-16705115 | None:intergenic | 5.0% |
| AAGGAGTTCAGCTCGGTTCA+GGG | - | chr5_2:16705228-16705247 | None:intergenic | 50.0% | |
| AAAGGAGTTCAGCTCGGTTC+AGG | - | chr5_2:16705229-16705248 | None:intergenic | 50.0% | |
| TCTCTCTCTCTCTCTCTCTC+TGG | - | chr5_2:16705303-16705322 | None:intergenic | 50.0% | |
| TCTCAGAGATTGTGAGGACG+TGG | - | chr5_2:16705501-16705520 | None:intergenic | 50.0% | |
| GGTAGACAAAGGAAGCGATG+AGG | - | chr5_2:16705540-16705559 | None:intergenic | 50.0% | |
| ! | TTCGGTGGTGGTAGCTTCTT+CGG | - | chr5_2:16705652-16705671 | None:intergenic | 50.0% |
| TATGTCCATGGAAGACGAGG+AGG | + | chr5_2:16705690-16705709 | Msa0760260:CDS | 50.0% | |
| GCCGACGTGCAGCAAATATT+AGG | + | chr5_2:16705776-16705795 | Msa0760260:CDS | 50.0% | |
| GTCACTTGAAGGTCTACCGA+TGG | + | chr5_2:16705828-16705847 | Msa0760260:CDS | 50.0% | |
| CTTGAAGGTCTACCGATGGA+AGG | + | chr5_2:16705832-16705851 | Msa0760260:CDS | 50.0% | |
| TCATTCCCGTCGAGCAACAA+AGG | - | chr5_2:16705937-16705956 | None:intergenic | 50.0% | |
| TGCAACCAAACAACCTTCGG+TGG | - | chr5_2:16705980-16705999 | None:intergenic | 50.0% | |
| TTGTTCAACGGGCGATGCAA+TGG | + | chr5_2:16706343-16706362 | Msa0760260:CDS | 50.0% | |
| TGTTCAACGGGCGATGCAAT+GGG | + | chr5_2:16706344-16706363 | Msa0760260:CDS | 50.0% | |
| CGATGCAATGGGGATGAACA+TGG | + | chr5_2:16706355-16706374 | Msa0760260:CDS | 50.0% | |
| AGAAAGCTGCGGCAGTGAAT+TGG | + | chr5_2:16706471-16706490 | Msa0760260:CDS | 50.0% | |
| GCGGCAGTGAATTGGATTGA+AGG | + | chr5_2:16706479-16706498 | Msa0760260:CDS | 50.0% | |
| TGAAGGGAGAGGGAAATCAG+TGG | + | chr5_2:16706496-16706515 | Msa0760260:CDS | 50.0% | |
| AGGGAAATCAGTGGTGTGTG+AGG | + | chr5_2:16706505-16706524 | Msa0760260:CDS | 50.0% | |
| GTCATTCACGGCTTCCATCA+TGG | - | chr5_2:16706738-16706757 | None:intergenic | 50.0% | |
| CACTATGCCTTCCATTGAGG+TGG | + | chr5_2:16706781-16706800 | Msa0760260:CDS | 50.0% | |
| GGAGCTAGTAAAGAGACTCC+AGG | + | chr5_2:16706869-16706888 | Msa0760260:CDS | 50.0% | |
| AGACTCCAGGAGCAAATTCC+AGG | + | chr5_2:16706882-16706901 | Msa0760260:CDS | 50.0% | |
| ! | AGTTGCCTGGAATTTGCTCC+TGG | - | chr5_2:16706890-16706909 | None:intergenic | 50.0% |
| AGGAGCAAATTCCAGGCAAC+TGG | + | chr5_2:16706889-16706908 | Msa0760260:CDS | 50.0% | |
| CTCATGTCTGCAATTGCAGC+CGG | + | chr5_2:16706953-16706972 | Msa0760260:CDS | 50.0% | |
| TCATGTCTGCAATTGCAGCC+GGG | + | chr5_2:16706954-16706973 | Msa0760260:CDS | 50.0% | |
| GAGAAACACTTGTGTGGACC+AGG | - | chr5_2:16707363-16707382 | None:intergenic | 50.0% | |
| AGGAGTTCAGCTCGGTTCAG+GGG | - | chr5_2:16705227-16705246 | None:intergenic | 55.0% | |
| ! | CGTGGAGAGGTGTAGAGGTT+CGG | - | chr5_2:16705483-16705502 | None:intergenic | 55.0% |
| GAGATTGTGAGGACGTGGAG+AGG | - | chr5_2:16705496-16705515 | None:intergenic | 55.0% | |
| CTTCGGCAAGACACCTTGAG+TGG | - | chr5_2:16705635-16705654 | None:intergenic | 55.0% | |
| GACAACCTCCTCGTCTTCCA+TGG | - | chr5_2:16705698-16705717 | None:intergenic | 55.0% | |
| GTTGTCAGTGCAGTGGTGTC+AGG | + | chr5_2:16705712-16705731 | Msa0760260:CDS | 55.0% | |
| ACGTCGGCAATCTCCAAGCT+TGG | - | chr5_2:16705764-16705783 | None:intergenic | 55.0% | |
| CAGTAACTCTCTCCACCGCT+TGG | - | chr5_2:16705804-16705823 | None:intergenic | 55.0% | |
| CAAGCGGTGGAGAGAGTTAC+TGG | + | chr5_2:16705802-16705821 | Msa0760260:CDS | 55.0% | |
| CGGTGGAGAGAGTTACTGGA+AGG | + | chr5_2:16705806-16705825 | Msa0760260:CDS | 55.0% | |
| CAGTGTTGCGAGATGCCGAT+AGG | + | chr5_2:16705880-16705899 | Msa0760260:CDS | 55.0% | |
| ! | AGGCTTTGTGCAGATACCCG+TGG | + | chr5_2:16705900-16705919 | Msa0760260:CDS | 55.0% |
| ! | GGCTTTGTGCAGATACCCGT+GGG | + | chr5_2:16705901-16705920 | Msa0760260:CDS | 55.0% |
| GCTCGACGGGAATGAGTACA+CGG | + | chr5_2:16705942-16705961 | Msa0760260:CDS | 55.0% | |
| ! | GAATGAGTACACGGTGCCGA+TGG | + | chr5_2:16705951-16705970 | Msa0760260:CDS | 55.0% |
| CAACCTTCGGTGGTTGCCAT+CGG | - | chr5_2:16705970-16705989 | None:intergenic | 55.0% | |
| GGCAACCACCGAAGGTTGTT+TGG | + | chr5_2:16705972-16705991 | Msa0760260:CDS | 55.0% | |
| GAATCTTACAACGGGGGCTC+TGG | - | chr5_2:16706076-16706095 | None:intergenic | 55.0% | |
| GTTCAACGGGCGATGCAATG+GGG | + | chr5_2:16706345-16706364 | Msa0760260:CDS | 55.0% | |
| CAGCCATGGCTGAACCAGTA+AGG | - | chr5_2:16706610-16706629 | None:intergenic | 55.0% | |
| !! | CTTACTGGTTCAGCCATGGC+TGG | + | chr5_2:16706608-16706627 | Msa0760260:CDS | 55.0% |
| ! | GGAAGCCGTGAATGACGGAA+AGG | + | chr5_2:16706742-16706761 | Msa0760260:CDS | 55.0% |
| ACTGTGCCCACCTCAATGGA+AGG | - | chr5_2:16706791-16706810 | None:intergenic | 55.0% | |
| TCCATTGAGGTGGGCACAGT+AGG | + | chr5_2:16706791-16706810 | Msa0760260:CDS | 55.0% | |
| TCCTACTGTGCCCACCTCAA+TGG | - | chr5_2:16706795-16706814 | None:intergenic | 55.0% | |
| ATTGAGGTGGGCACAGTAGG+AGG | + | chr5_2:16706794-16706813 | Msa0760260:CDS | 55.0% | |
| TTGAGGTGGGCACAGTAGGA+GGG | + | chr5_2:16706795-16706814 | Msa0760260:CDS | 55.0% | |
| GTAGCTGCTTCAGTCCTTGC+AGG | + | chr5_2:16706920-16706939 | Msa0760260:CDS | 55.0% | |
| TGAGTGAGAGCTCTCCTGCA+AGG | - | chr5_2:16706937-16706956 | None:intergenic | 55.0% | |
| ! | GAGGACGTGGAGAGGTGTAG+AGG | - | chr5_2:16705488-16705507 | None:intergenic | 60.0% |
| CGAGGAGGTTGTCAGTGCAG+TGG | + | chr5_2:16705705-16705724 | Msa0760260:CDS | 60.0% | |
| ! | CAGATACCCGTGGGTGTTGC+CGG | + | chr5_2:16705910-16705929 | Msa0760260:CDS | 60.0% |
| AAAGGACCGGCAACACCCAC+GGG | - | chr5_2:16705919-16705938 | None:intergenic | 60.0% | |
| CAAAGGACCGGCAACACCCA+CGG | - | chr5_2:16705920-16705939 | None:intergenic | 60.0% | |
| GCCGGTCCTTTGTTGCTCGA+CGG | + | chr5_2:16705928-16705947 | Msa0760260:CDS | 60.0% | |
| CCCGTCGAGCAACAAAGGAC+CGG | - | chr5_2:16705932-16705951 | None:intergenic | 60.0% | |
| CCGGTCCTTTGTTGCTCGAC+GGG | + | chr5_2:16705929-16705948 | Msa0760260:CDS | 60.0% | |
| CATTCCGTCGCGGAGCACAA+CGG | - | chr5_2:16706052-16706071 | None:intergenic | 60.0% | |
| TCAGCCATGGCTGGTGCTCT+TGG | + | chr5_2:16706617-16706636 | Msa0760260:CDS | 60.0% | |
| TGAGGTGGGCACAGTAGGAG+GGG | + | chr5_2:16706796-16706815 | Msa0760260:CDS | 60.0% | |
| ! | GTGCCGATGGCAACCACCGA+AGG | + | chr5_2:16705964-16705983 | Msa0760260:CDS | 65.0% |
| !! | CACAACGGCGGAAGCACCAC+CGG | - | chr5_2:16706037-16706056 | None:intergenic | 65.0% |
| ! | GGGCTCTGGTCATTCCGTCG+CGG | - | chr5_2:16706062-16706081 | None:intergenic | 65.0% |
| GCCATGGCTGGTGCTCTTGG+CGG | + | chr5_2:16706620-16706639 | Msa0760260:CDS | 65.0% | |
| GAGGTGGGCACAGTAGGAGG+GGG | + | chr5_2:16706797-16706816 | Msa0760260:CDS | 65.0% | |
| TCCGCCGTTGTGCTCCGCGA+CGG | + | chr5_2:16706045-16706064 | Msa0760260:CDS | 70.0% | |
| TCCGTCGCGGAGCACAACGG+CGG | - | chr5_2:16706049-16706068 | None:intergenic | 70.0% | |
| !! | GCCGCCAAGAGCACCAGCCA+TGG | - | chr5_2:16706624-16706643 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 16704990 | 16707462 | 16704990 | ID=Msa0760260;Name=Msa0760260 |
| chr5_2 | mRNA | 16704990 | 16707462 | 16704990 | ID=Msa0760260-mRNA-1;Parent=Msa0760260;Name=Msa0760260-mRNA-1;_AED=0.02;_eAED=0.02;_QI=338|1|1|1|1|1|2|420|540 |
| chr5_2 | exon | 16704990 | 16706178 | 16704990 | ID=Msa0760260-mRNA-1:exon:7376;Parent=Msa0760260-mRNA-1 |
| chr5_2 | exon | 16706271 | 16707462 | 16706271 | ID=Msa0760260-mRNA-1:exon:7377;Parent=Msa0760260-mRNA-1 |
| chr5_2 | five_prime_UTR | 16704990 | 16705327 | 16704990 | ID=Msa0760260-mRNA-1:five_prime_utr;Parent=Msa0760260-mRNA-1 |
| chr5_2 | CDS | 16705328 | 16706178 | 16705328 | ID=Msa0760260-mRNA-1:cds;Parent=Msa0760260-mRNA-1 |
| chr5_2 | CDS | 16706271 | 16707042 | 16706271 | ID=Msa0760260-mRNA-1:cds;Parent=Msa0760260-mRNA-1 |
| chr5_2 | three_prime_UTR | 16707043 | 16707462 | 16707043 | ID=Msa0760260-mRNA-1:three_prime_utr;Parent=Msa0760260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
