Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0760330 | XP_003612561.1 | 98.158 | 543 | 6 | 2 | 1 | 540 | 1 | 542 | 0.0 | 1091 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0760330 | sp|P29057|HMDH1_HEVBR | 75.277 | 542 | 108 | 1 | 25 | 540 | 34 | 575 | 0.0 | 844 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0760330 | G7K5G9 | 98.158 | 543 | 6 | 2 | 1 | 540 | 1 | 542 | 0.0 | 1091 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0760260 | Msa0760330 | 0.981208 | 4.944868e-152 | -8.615850e-47 |
Msa0760280 | Msa0760330 | 0.938028 | 1.320846e-98 | -8.615850e-47 |
Msa0760310 | Msa0760330 | 0.902383 | 1.025168e-78 | -8.615850e-47 |
Msa0760330 | Msa0801680 | 0.831111 | 2.009202e-55 | -8.615850e-47 |
Msa0760330 | Msa0840050 | 0.812903 | 3.354451e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0760330 | MtrunA17_Chr5g0409021 | 98.158 | 543 | 6 | 2 | 1 | 540 | 1 | 542 | 0.0 | 1091 |
Msa0760330 | MtrunA17_Chr5g0408991 | 98.158 | 543 | 6 | 2 | 1 | 540 | 1 | 542 | 0.0 | 1091 |
Msa0760330 | MtrunA17_Chr5g0408981 | 98.158 | 543 | 6 | 2 | 1 | 540 | 1 | 542 | 0.0 | 1091 |
Msa0760330 | MtrunA17_Chr5g0409011 | 98.158 | 543 | 6 | 2 | 1 | 540 | 1 | 542 | 0.0 | 1091 |
Msa0760330 | MtrunA17_Chr5g0409001 | 97.974 | 543 | 7 | 2 | 1 | 540 | 1 | 542 | 0.0 | 1090 |
Msa0760330 | MtrunA17_Chr5g0409031 | 92.364 | 550 | 32 | 3 | 1 | 540 | 1 | 550 | 0.0 | 1000 |
Msa0760330 | MtrunA17_Chr5g0442831 | 90.146 | 548 | 43 | 5 | 1 | 540 | 1 | 545 | 0.0 | 999 |
Msa0760330 | MtrunA17_Chr5g0407521 | 84.656 | 567 | 60 | 6 | 1 | 540 | 1 | 567 | 0.0 | 967 |
Msa0760330 | MtrunA17_Chr8g0370001 | 77.798 | 545 | 97 | 6 | 20 | 540 | 39 | 583 | 0.0 | 862 |
Msa0760330 | MtrunA17_Chr5g0440371 | 75.568 | 528 | 112 | 3 | 25 | 540 | 43 | 565 | 0.0 | 806 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0760330 | AT1G76490.1 | 72.727 | 528 | 128 | 1 | 25 | 536 | 105 | 632 | 0.0 | 816 |
Msa0760330 | AT2G17370.1 | 69.173 | 532 | 148 | 4 | 16 | 535 | 27 | 554 | 0.0 | 773 |
Find 166 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAAATTTACTTGGTGTTAA+AGG | 0.164546 | 5_2:-16735781 | Msa0760330:CDS |
GTGAATCCTCCTGCTTCTTT+TGG | 0.210539 | 5_2:+16737260 | None:intergenic |
TTTGACTACGATTCTATATT+AGG | 0.222070 | 5_2:-16736773 | Msa0760330:CDS |
TGTAAAGCTATTTATGTTTC+CGG | 0.222759 | 5_2:-16736614 | Msa0760330:CDS |
TGGACTAAGATCAAGAATTT+TGG | 0.254758 | 5_2:-16735418 | Msa0760330:three_prime_UTR |
ATGAGCATTTATTGAAAATA+TGG | 0.271946 | 5_2:-16735478 | Msa0760330:three_prime_UTR |
TTTCCCGATATGGATGTTAT+TGG | 0.272380 | 5_2:-16736207 | Msa0760330:CDS |
CGGCAAAGTCGCATACTAAA+TGG | 0.279738 | 5_2:+16735454 | None:intergenic |
GGGAATATGAGTGAGGAATA+AGG | 0.285211 | 5_2:+16737506 | None:intergenic |
TTTCAACTGAGAAGCTCTTT+TGG | 0.287869 | 5_2:+16736526 | None:intergenic |
ATGGATGTTATTGGTATATC+TGG | 0.294760 | 5_2:-16736198 | Msa0760330:CDS |
ACTTGTTGAAAGTGTGAGAT+AGG | 0.316097 | 5_2:+16736471 | None:intergenic |
CAAGCGGTGGAGAGAGTTAC+TGG | 0.330166 | 5_2:-16736827 | Msa0760330:CDS |
GAAATACAATAGATCGAATA+AGG | 0.331829 | 5_2:-16735632 | Msa0760330:CDS |
CCGGTCCTTTGTTGCTCGAC+GGG | 0.332695 | 5_2:-16736700 | Msa0760330:CDS |
TATTTATAGACAGAGTATTC+AGG | 0.335888 | 5_2:+16737485 | None:intergenic |
GAAGACTAGTGTGGAGTCTT+TGG | 0.337986 | 5_2:-16736067 | Msa0760330:CDS |
CAGATACCCGTGGGTGTTGC+CGG | 0.352024 | 5_2:-16736719 | Msa0760330:CDS |
AATAGCTTTACAGCCTCTAT+TGG | 0.352070 | 5_2:+16736625 | None:intergenic |
AGACTCCAGGAGCAAATTCC+AGG | 0.354489 | 5_2:-16735747 | Msa0760330:CDS |
TTCGGTGGTGGTAGCTTCTT+CGG | 0.359048 | 5_2:+16736980 | None:intergenic |
TATTGTTTCTGCAATTTACT+TGG | 0.362082 | 5_2:-16735965 | Msa0760330:CDS |
AGAAAGCTGCGGCAGTGAAT+TGG | 0.369757 | 5_2:-16736158 | Msa0760330:CDS |
TCGCCTACTTTCTTCTCAAC+AGG | 0.377563 | 5_2:-16737186 | Msa0760330:CDS |
TCAGCCATGGCTGGTGCTCT+TGG | 0.377924 | 5_2:-16736012 | Msa0760330:CDS |
GGCAACCACCGAAGGTTGTT+TGG | 0.379682 | 5_2:-16736657 | Msa0760330:CDS |
GTCTACCTTATCACTTTCTT+CGG | 0.381652 | 5_2:-16737076 | Msa0760330:CDS |
AGTTGCCTGGAATTTGCTCC+TGG | 0.383258 | 5_2:+16735742 | None:intergenic |
AACATCCATATCGGGAAAAT+CGG | 0.385940 | 5_2:+16736212 | None:intergenic |
GCCGACGTGCAGCAAATATT+AGG | 0.386388 | 5_2:-16736853 | Msa0760330:CDS |
ACAGAGTATTAAAGCAACTA+TGG | 0.387120 | 5_2:-16736337 | Msa0760330:CDS |
AAAGGAGTTCAGCTCGGTTC+AGG | 0.388651 | 5_2:+16737404 | None:intergenic |
TATACCAATAACATCCATAT+CGG | 0.391041 | 5_2:+16736203 | None:intergenic |
GTTGTCAGTGCAGTGGTGTC+AGG | 0.395284 | 5_2:-16736917 | Msa0760330:CDS |
CTTCTTGTTCATCGTAATGA+AGG | 0.402904 | 5_2:+16737041 | None:intergenic |
ATAGAAAGAAACTTCAATAT+AGG | 0.403284 | 5_2:-16735519 | Msa0760330:three_prime_UTR |
GTAGCTGCTTCAGTCCTTGC+AGG | 0.405330 | 5_2:-16735709 | Msa0760330:CDS |
TGTTCAACGGGCGATGCAAT+GGG | 0.419261 | 5_2:-16736285 | Msa0760330:CDS |
CACAACGGCGGAAGCACCAC+CGG | 0.431698 | 5_2:+16736595 | None:intergenic |
CTCATGTCTGCAATTGCAGC+CGG | 0.440156 | 5_2:-16735676 | Msa0760330:CDS |
GGAATATGAGTGAGGAATAA+GGG | 0.443764 | 5_2:+16737507 | None:intergenic |
ACAAGATTTACTTGTTCAAC+GGG | 0.445932 | 5_2:-16736297 | Msa0760330:CDS |
AGGAGCAAATTCCAGGCAAC+TGG | 0.448129 | 5_2:-16735740 | Msa0760330:CDS |
TACTATAGTTGCCAGTTGCC+TGG | 0.450825 | 5_2:+16735729 | None:intergenic |
GCCGGTCCTTTGTTGCTCGA+CGG | 0.452645 | 5_2:-16736701 | Msa0760330:CDS |
CATATAAATGTAGATACTAT+AGG | 0.459944 | 5_2:-16735580 | Msa0760330:three_prime_UTR |
AAGGTCCTTTCCGTCATTCA+CGG | 0.465602 | 5_2:+16735882 | None:intergenic |
TCAGCTTGTCTAAATTTACT+TGG | 0.470739 | 5_2:-16735790 | Msa0760330:CDS |
CACAAGATTTACTTGTTCAA+CGG | 0.470833 | 5_2:-16736298 | Msa0760330:CDS |
TCCAGCTCATGAAGCAACTT+TGG | 0.470851 | 5_2:+16735603 | None:intergenic |
TCCTACTGTGCCCACCTCAA+TGG | 0.473062 | 5_2:+16735837 | None:intergenic |
TCTGCAATTTACTTGGCTAC+AGG | 0.474139 | 5_2:-16735958 | Msa0760330:CDS |
TACTCGCTTGAATCCAAGCT+TGG | 0.474728 | 5_2:-16736881 | Msa0760330:CDS |
ATTGAGGTGGGCACAGTAGG+AGG | 0.475464 | 5_2:-16735835 | Msa0760330:CDS |
ACCAAAGTTGCTTCATGAGC+TGG | 0.476922 | 5_2:-16735604 | Msa0760330:exon |
TTGTTCAACGGGCGATGCAA+TGG | 0.476991 | 5_2:-16736286 | Msa0760330:CDS |
AGTATTAAAGCAACTATGGC+TGG | 0.477370 | 5_2:-16736333 | Msa0760330:CDS |
AAGGAGTTCAGCTCGGTTCA+GGG | 0.478998 | 5_2:+16737405 | None:intergenic |
TTCAGGGGATGATTGATGAT+TGG | 0.479107 | 5_2:+16737421 | None:intergenic |
GCCATGGCTGGTGCTCTTGG+CGG | 0.483639 | 5_2:-16736009 | Msa0760330:CDS |
GCGGAGTTGAATCTTACAAC+GGG | 0.487921 | 5_2:+16736548 | None:intergenic |
GACAACCTCCTCGTCTTCCA+TGG | 0.491588 | 5_2:+16736934 | None:intergenic |
GTGAATTGGATTGAAGGGAG+AGG | 0.493977 | 5_2:-16736144 | Msa0760330:CDS |
GCTTGCAACCAAACAACCTT+CGG | 0.498750 | 5_2:+16736649 | None:intergenic |
CGTGGAGAGGTGTAGAGGTT+CGG | 0.500136 | 5_2:+16737149 | None:intergenic |
CAAAGGACCGGCAACACCCA+CGG | 0.504085 | 5_2:+16736712 | None:intergenic |
TCTCTCTGGTTATTATGTGA+AGG | 0.504346 | 5_2:+16737343 | None:intergenic |
ATTTATAGACAGAGTATTCA+GGG | 0.504848 | 5_2:+16737486 | None:intergenic |
CTTCGGCAAGACACCTTGAG+TGG | 0.505421 | 5_2:+16736997 | None:intergenic |
TGAGGTGGGCACAGTAGGAG+GGG | 0.507780 | 5_2:-16735833 | Msa0760330:CDS |
GTCATTCACGGCTTCCATCA+TGG | 0.509060 | 5_2:+16735894 | None:intergenic |
GAAGAAGAACCAAAAGAAGC+AGG | 0.514129 | 5_2:-16737269 | Msa0760330:CDS |
TTGAGGTGGGCACAGTAGGA+GGG | 0.514782 | 5_2:-16735834 | Msa0760330:CDS |
CACTATGCCTTCCATTGAGG+TGG | 0.515478 | 5_2:-16735848 | Msa0760330:CDS |
GAACTTTCAACATTCTGAGC+AGG | 0.515798 | 5_2:+16735928 | None:intergenic |
TACAACACAATTAAAAGTAC+AGG | 0.516480 | 5_2:+16735239 | None:intergenic |
GTTACTGGAAGGTCACTTGA+AGG | 0.516512 | 5_2:-16736812 | Msa0760330:CDS |
GAGAGAAGAGAAGAGAGAGA+AGG | 0.526893 | 5_2:-16735331 | Msa0760330:three_prime_UTR |
GCGGCAGTGAATTGGATTGA+AGG | 0.530179 | 5_2:-16736150 | Msa0760330:CDS |
GGGATGAACATGGTATCAAA+AGG | 0.530588 | 5_2:-16736264 | Msa0760330:CDS |
TCCGCCGTTGTGCTCCGCGA+CGG | 0.530752 | 5_2:-16736584 | Msa0760330:CDS |
GCCGCCAAGAGCACCAGCCA+TGG | 0.530980 | 5_2:+16736008 | None:intergenic |
CAGTAACTCTCTCCACCGCT+TGG | 0.534084 | 5_2:+16736828 | None:intergenic |
CTTACTGGTTCAGCCATGGC+TGG | 0.534747 | 5_2:-16736021 | Msa0760330:CDS |
AAAGGACCGGCAACACCCAC+GGG | 0.536404 | 5_2:+16736713 | None:intergenic |
GCATAGTGACTGAGATATGA+AGG | 0.538116 | 5_2:+16735863 | None:intergenic |
GAGAAACACTTGTGTGGACC+AGG | 0.538771 | 5_2:+16735269 | None:intergenic |
AAAATAAAAGAAAGAAACAA+AGG | 0.539898 | 5_2:+16737386 | None:intergenic |
TCGATCTATTGTATTTCATG+TGG | 0.540574 | 5_2:+16735638 | None:intergenic |
CAGCCATGGCTGAACCAGTA+AGG | 0.543116 | 5_2:+16736022 | None:intergenic |
TGAATTGGATTGAAGGGAGA+GGG | 0.544400 | 5_2:-16736143 | Msa0760330:CDS |
ATACCAATAACATCCATATC+GGG | 0.544400 | 5_2:+16736204 | None:intergenic |
TTGGTTGCAAGCACCAATAG+AGG | 0.544821 | 5_2:-16736638 | Msa0760330:CDS |
GGTGTGTGAGGCTGTAATAA+AGG | 0.545187 | 5_2:-16736112 | Msa0760330:CDS |
TCCATTGAGGTGGGCACAGT+AGG | 0.547051 | 5_2:-16735838 | Msa0760330:CDS |
CCACCTGTTGAGAAGAAAGT+AGG | 0.548746 | 5_2:+16737183 | None:intergenic |
CCCGTCGAGCAACAAAGGAC+CGG | 0.551690 | 5_2:+16736700 | None:intergenic |
GGCTTTGTGCAGATACCCGT+GGG | 0.558873 | 5_2:-16736728 | Msa0760330:CDS |
CTTGTTGAAAGTGTGAGATA+GGG | 0.559419 | 5_2:+16736472 | None:intergenic |
CGATGCAATGGGGATGAACA+TGG | 0.560850 | 5_2:-16736274 | Msa0760330:CDS |
ATGATGGAAGCCGTGAATGA+CGG | 0.562542 | 5_2:-16735892 | Msa0760330:CDS |
CAACCTTCGGTGGTTGCCAT+CGG | 0.562844 | 5_2:+16736662 | None:intergenic |
TCTCAGAGATTGTGAGGACG+TGG | 0.566190 | 5_2:+16737131 | None:intergenic |
TTCATCGTAATGAAGGATGA+AGG | 0.570197 | 5_2:+16737048 | None:intergenic |
GTAGACAAAGGAAGCGATGA+GGG | 0.571349 | 5_2:+16737093 | None:intergenic |
CAATGCCGAAGAAAGTGATA+AGG | 0.571966 | 5_2:+16737071 | None:intergenic |
TTCTCACTGTATGACCATGA+TGG | 0.576680 | 5_2:-16735908 | Msa0760330:CDS |
GTGCCGATGGCAACCACCGA+AGG | 0.578946 | 5_2:-16736665 | Msa0760330:CDS |
GAAAGTGATAAGGTAGACAA+AGG | 0.579162 | 5_2:+16737081 | None:intergenic |
TCATGTCTGCAATTGCAGCC+GGG | 0.579236 | 5_2:-16735675 | Msa0760330:CDS |
AGTCACTATGCCTTCCATTG+AGG | 0.579598 | 5_2:-16735851 | Msa0760330:CDS |
CGAGAATCTCAGAGATTGTG+AGG | 0.579813 | 5_2:+16737125 | None:intergenic |
CGGCAGTGAATTGGATTGAA+GGG | 0.579892 | 5_2:-16736149 | Msa0760330:CDS |
GGCTGTAATAAAGGAAGAGG+TGG | 0.590912 | 5_2:-16736103 | Msa0760330:CDS |
CCTACTTTCTTCTCAACAGG+TGG | 0.592173 | 5_2:-16737183 | Msa0760330:CDS |
GGAGCTAGTAAAGAGACTCC+AGG | 0.592509 | 5_2:-16735760 | Msa0760330:CDS |
TCATTCCCGTCGAGCAACAA+AGG | 0.592806 | 5_2:+16736695 | None:intergenic |
AAACCTTACTGGTTCAGCCA+TGG | 0.593436 | 5_2:-16736025 | Msa0760330:CDS |
GGTATCTGCACAAAGCCTAT+CGG | 0.594636 | 5_2:+16736734 | None:intergenic |
ACGTCGGCAATCTCCAAGCT+TGG | 0.594876 | 5_2:+16736868 | None:intergenic |
GAGGTGGGCACAGTAGGAGG+GGG | 0.595689 | 5_2:-16735832 | Msa0760330:CDS |
TGCAACCAAACAACCTTCGG+TGG | 0.597240 | 5_2:+16736652 | None:intergenic |
CTTGAAGGTCTACCGATGGA+AGG | 0.597862 | 5_2:-16736797 | Msa0760330:CDS |
GTCACTTGAAGGTCTACCGA+TGG | 0.600375 | 5_2:-16736801 | Msa0760330:CDS |
AGGCTTTGTGCAGATACCCG+TGG | 0.602817 | 5_2:-16736729 | Msa0760330:CDS |
TTGGATTCAAGCGAGTAAGA+TGG | 0.603959 | 5_2:+16736887 | None:intergenic |
CAGTGTTGCGAGATGCCGAT+AGG | 0.609276 | 5_2:-16736749 | Msa0760330:CDS |
AGGAGTTCAGCTCGGTTCAG+GGG | 0.609892 | 5_2:+16737406 | None:intergenic |
CATTCCGTCGCGGAGCACAA+CGG | 0.610168 | 5_2:+16736580 | None:intergenic |
GAATGAGTACACGGTGCCGA+TGG | 0.611062 | 5_2:-16736678 | Msa0760330:CDS |
ACTGTGCCCACCTCAATGGA+AGG | 0.611639 | 5_2:+16735841 | None:intergenic |
TCCTAATATTTGCTGCACGT+CGG | 0.613799 | 5_2:+16736852 | None:intergenic |
TGAGGCTGTAATAAAGGAAG+AGG | 0.613924 | 5_2:-16736106 | Msa0760330:CDS |
TGAGTGAGAGCTCTCCTGCA+AGG | 0.619208 | 5_2:+16735695 | None:intergenic |
GGAAGCCGTGAATGACGGAA+AGG | 0.619681 | 5_2:-16735887 | Msa0760330:CDS |
GGCGGAGTTGAATCTTACAA+CGG | 0.622253 | 5_2:+16736547 | None:intergenic |
TTTGCCGAGAAAATCTTGTG+TGG | 0.629653 | 5_2:-16735438 | Msa0760330:three_prime_UTR |
ACTATGCCTTCCATTGAGGT+GGG | 0.631117 | 5_2:-16735847 | Msa0760330:CDS |
GAGATTGTGAGGACGTGGAG+AGG | 0.633078 | 5_2:+16737136 | None:intergenic |
GAGGACGTGGAGAGGTGTAG+AGG | 0.634951 | 5_2:+16737144 | None:intergenic |
TCGTAGTCAAAACCTTCCAT+CGG | 0.635128 | 5_2:+16736785 | None:intergenic |
CGAGGAGGTTGTCAGTGCAG+TGG | 0.639217 | 5_2:-16736924 | Msa0760330:CDS |
AATGAACTCGTGAACAACGA+GGG | 0.639706 | 5_2:+16737594 | None:intergenic |
AAAGCTATTTATGTTTCCGG+TGG | 0.645691 | 5_2:-16736611 | Msa0760330:CDS |
GAAGAACCAAAAGAAGCAGG+AGG | 0.646116 | 5_2:-16737266 | Msa0760330:CDS |
CGGTGGAGAGAGTTACTGGA+AGG | 0.646441 | 5_2:-16736823 | Msa0760330:CDS |
AGAAACAAAGGAGTTCAGCT+CGG | 0.647208 | 5_2:+16737398 | None:intergenic |
AGTTATGTCCATGGAAGACG+AGG | 0.649583 | 5_2:-16736942 | Msa0760330:CDS |
AAATATTAGGAACCAAGCGG+TGG | 0.657334 | 5_2:-16736840 | Msa0760330:CDS |
GTTGAGAAGAAAGTAGGCGA+CGG | 0.659806 | 5_2:+16737189 | None:intergenic |
AGGGAAATCAGTGGTGTGTG+AGG | 0.661214 | 5_2:-16736124 | Msa0760330:CDS |
GGTAGACAAAGGAAGCGATG+AGG | 0.674346 | 5_2:+16737092 | None:intergenic |
TAATGAACTCGTGAACAACG+AGG | 0.675719 | 5_2:+16737593 | None:intergenic |
CGGAGTTGAATCTTACAACG+GGG | 0.676491 | 5_2:+16736549 | None:intergenic |
GAAAGTGCTGAAGACTAGTG+TGG | 0.677484 | 5_2:-16736076 | Msa0760330:CDS |
TGAAGGGAGAGGGAAATCAG+TGG | 0.677523 | 5_2:-16736133 | Msa0760330:CDS |
TTGTTCGGACAAGAAAGCTG+CGG | 0.678327 | 5_2:-16736169 | Msa0760330:CDS |
TCCGTCGCGGAGCACAACGG+CGG | 0.678366 | 5_2:+16736583 | None:intergenic |
GTTCAACGGGCGATGCAATG+GGG | 0.689087 | 5_2:-16736284 | Msa0760330:CDS |
TATGTCCATGGAAGACGAGG+AGG | 0.690419 | 5_2:-16736939 | Msa0760330:CDS |
GTATTCAGGGAATATGAGTG+AGG | 0.692268 | 5_2:+16737499 | None:intergenic |
GCTCGACGGGAATGAGTACA+CGG | 0.696837 | 5_2:-16736687 | Msa0760330:CDS |
AGCAAATATTAGGAACCAAG+CGG | 0.709396 | 5_2:-16736843 | Msa0760330:CDS |
AAAGTCGAGAAACACTTGTG+TGG | 0.718230 | 5_2:+16735263 | None:intergenic |
GGGCTCTGGTCATTCCGTCG+CGG | 0.721794 | 5_2:+16736570 | None:intergenic |
GGAGTTGAATCTTACAACGG+GGG | 0.724389 | 5_2:+16736550 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATAAAAGAAAGAAACAA+AGG | + | chr5_2:16735446-16735465 | None:intergenic | 15.0% |
!! | AGATAAAAGGTAAAATATAT+AGG | + | chr5_2:16736410-16736429 | None:intergenic | 15.0% |
!!! | CTAGATGATAACATATTTTA+TGG | + | chr5_2:16735199-16735218 | None:intergenic | 20.0% |
!!! | TTAACAAATGTTGTTTTCTT+TGG | - | chr5_2:16735606-16735625 | Msa0760330:exon | 20.0% |
!! | GTAATTTCAACAAAGATAAA+AGG | + | chr5_2:16736423-16736442 | None:intergenic | 20.0% |
!! | GGATGATTGATTATATATTT+AGG | - | chr5_2:16736449-16736468 | Msa0760330:intron | 20.0% |
!!! | TATATCTGGAAATTTTTGTT+CGG | - | chr5_2:16736645-16736664 | Msa0760330:CDS | 20.0% |
!! | CATATAAATGTAGATACTAT+AGG | - | chr5_2:16737249-16737268 | Msa0760330:CDS | 20.0% |
!! | ATAGAAAGAAACTTCAATAT+AGG | - | chr5_2:16737310-16737329 | Msa0760330:exon | 20.0% |
!! | ATGAGCATTTATTGAAAATA+TGG | - | chr5_2:16737351-16737370 | Msa0760330:five_prime_UTR | 20.0% |
!! | ATTTATAGACAGAGTATTCA+GGG | + | chr5_2:16735346-16735365 | None:intergenic | 25.0% |
!! | TATTTATAGACAGAGTATTC+AGG | + | chr5_2:16735347-16735366 | None:intergenic | 25.0% |
!!! | ACTTTTTGGTCAGATATTTT+CGG | + | chr5_2:16735870-16735889 | None:intergenic | 25.0% |
! | TTTGACTACGATTCTATATT+AGG | - | chr5_2:16736056-16736075 | Msa0760330:CDS | 25.0% |
! | TGTAAAGCTATTTATGTTTC+CGG | - | chr5_2:16736215-16736234 | Msa0760330:CDS | 25.0% |
! | CTTTGTTGAAATTACTCATT+TGG | - | chr5_2:16736428-16736447 | Msa0760330:intron | 25.0% |
! | TATACCAATAACATCCATAT+CGG | + | chr5_2:16736629-16736648 | None:intergenic | 25.0% |
!!! | TATTGTTTCTGCAATTTACT+TGG | - | chr5_2:16736864-16736883 | Msa0760330:CDS | 25.0% |
!!! | CTAAATTTACTTGGTGTTAA+AGG | - | chr5_2:16737048-16737067 | Msa0760330:CDS | 25.0% |
! | GAAATACAATAGATCGAATA+AGG | - | chr5_2:16737197-16737216 | Msa0760330:CDS | 25.0% |
!!! | TAAGATCAAGAATTTTGGTT+TGG | - | chr5_2:16737416-16737435 | Msa0760330:five_prime_UTR | 25.0% |
!! | TGTGATCAAACCAAAATTTT+TGG | - | chr5_2:16737536-16737555 | Msa0760330:five_prime_UTR | 25.0% |
!! | TACAACACAATTAAAAGTAC+AGG | + | chr5_2:16737593-16737612 | None:intergenic | 25.0% |
! | ACAGAGTATTAAAGCAACTA+TGG | - | chr5_2:16736492-16736511 | Msa0760330:CDS | 30.0% |
CACAAGATTTACTTGTTCAA+CGG | - | chr5_2:16736531-16736550 | Msa0760330:CDS | 30.0% | |
ACAAGATTTACTTGTTCAAC+GGG | - | chr5_2:16736532-16736551 | Msa0760330:CDS | 30.0% | |
ATACCAATAACATCCATATC+GGG | + | chr5_2:16736628-16736647 | None:intergenic | 30.0% | |
ATGGATGTTATTGGTATATC+TGG | - | chr5_2:16736631-16736650 | Msa0760330:CDS | 30.0% | |
AACATGCTAAAAAACCTTAC+TGG | - | chr5_2:16736793-16736812 | Msa0760330:CDS | 30.0% | |
TCAGCTTGTCTAAATTTACT+TGG | - | chr5_2:16737039-16737058 | Msa0760330:CDS | 30.0% | |
TCGATCTATTGTATTTCATG+TGG | + | chr5_2:16737194-16737213 | None:intergenic | 30.0% | |
! | TGGACTAAGATCAAGAATTT+TGG | - | chr5_2:16737411-16737430 | Msa0760330:five_prime_UTR | 30.0% |
GGAATATGAGTGAGGAATAA+GGG | + | chr5_2:16735325-16735344 | None:intergenic | 35.0% | |
TCTCTCTGGTTATTATGTGA+AGG | + | chr5_2:16735489-16735508 | None:intergenic | 35.0% | |
GAAAGTGATAAGGTAGACAA+AGG | + | chr5_2:16735751-16735770 | None:intergenic | 35.0% | |
GTCTACCTTATCACTTTCTT+CGG | - | chr5_2:16735753-16735772 | Msa0760330:CDS | 35.0% | |
TTCATCGTAATGAAGGATGA+AGG | + | chr5_2:16735784-16735803 | None:intergenic | 35.0% | |
CTTCTTGTTCATCGTAATGA+AGG | + | chr5_2:16735791-16735810 | None:intergenic | 35.0% | |
! | TTTTGGTCAGATATTTTCGG+TGG | + | chr5_2:16735867-16735886 | None:intergenic | 35.0% |
TGACCAAAAAGTTATGTCCA+TGG | - | chr5_2:16735878-16735897 | Msa0760330:CDS | 35.0% | |
! | CTTCCATGGACATAACTTTT+TGG | + | chr5_2:16735884-16735903 | None:intergenic | 35.0% |
AGCAAATATTAGGAACCAAG+CGG | - | chr5_2:16735986-16736005 | Msa0760330:CDS | 35.0% | |
! | AATAGCTTTACAGCCTCTAT+TGG | + | chr5_2:16736207-16736226 | None:intergenic | 35.0% |
AAAGCTATTTATGTTTCCGG+TGG | - | chr5_2:16736218-16736237 | Msa0760330:CDS | 35.0% | |
! | TTTCAACTGAGAAGCTCTTT+TGG | + | chr5_2:16736306-16736325 | None:intergenic | 35.0% |
!! | GATAGGGCATCAAAATTTTG+AGG | + | chr5_2:16736344-16736363 | None:intergenic | 35.0% |
! | CTTGTTGAAAGTGTGAGATA+GGG | + | chr5_2:16736360-16736379 | None:intergenic | 35.0% |
! | ACTTGTTGAAAGTGTGAGAT+AGG | + | chr5_2:16736361-16736380 | None:intergenic | 35.0% |
AGTATTAAAGCAACTATGGC+TGG | - | chr5_2:16736496-16736515 | Msa0760330:CDS | 35.0% | |
AACATCCATATCGGGAAAAT+CGG | + | chr5_2:16736620-16736639 | None:intergenic | 35.0% | |
TTTCCCGATATGGATGTTAT+TGG | - | chr5_2:16736622-16736641 | Msa0760330:CDS | 35.0% | |
! | TAGTCCACACAAGATTTTCT+CGG | + | chr5_2:16737398-16737417 | None:intergenic | 35.0% |
!!! | CAAACCAAAATTTTTGGTCC+TGG | - | chr5_2:16737542-16737561 | Msa0760330:five_prime_UTR | 35.0% |
AATGAACTCGTGAACAACGA+GGG | + | chr5_2:16735238-16735257 | None:intergenic | 40.0% | |
TAATGAACTCGTGAACAACG+AGG | + | chr5_2:16735239-16735258 | None:intergenic | 40.0% | |
GGGAATATGAGTGAGGAATA+AGG | + | chr5_2:16735326-16735345 | None:intergenic | 40.0% | |
GTATTCAGGGAATATGAGTG+AGG | + | chr5_2:16735333-16735352 | None:intergenic | 40.0% | |
! | TTCAGGGGATGATTGATGAT+TGG | + | chr5_2:16735411-16735430 | None:intergenic | 40.0% |
AGAAACAAAGGAGTTCAGCT+CGG | + | chr5_2:16735434-16735453 | None:intergenic | 40.0% | |
GAAGAAGAACCAAAAGAAGC+AGG | - | chr5_2:16735560-16735579 | Msa0760330:three_prime_UTR | 40.0% | |
CAATGCCGAAGAAAGTGATA+AGG | + | chr5_2:16735761-16735780 | None:intergenic | 40.0% | |
ATTGCTGCAAAAACCACTCA+AGG | - | chr5_2:16735819-16735838 | Msa0760330:CDS | 40.0% | |
TTGGATTCAAGCGAGTAAGA+TGG | + | chr5_2:16735945-16735964 | None:intergenic | 40.0% | |
! | TCCTAATATTTGCTGCACGT+CGG | + | chr5_2:16735980-16735999 | None:intergenic | 40.0% |
AAATATTAGGAACCAAGCGG+TGG | - | chr5_2:16735989-16736008 | Msa0760330:CDS | 40.0% | |
TCGTAGTCAAAACCTTCCAT+CGG | + | chr5_2:16736047-16736066 | None:intergenic | 40.0% | |
GGGATGAACATGGTATCAAA+AGG | - | chr5_2:16736565-16736584 | Msa0760330:CDS | 40.0% | |
!! | TCAAACCGATTTTCCCGATA+TGG | - | chr5_2:16736612-16736631 | Msa0760330:CDS | 40.0% |
TGAATTGGATTGAAGGGAGA+GGG | - | chr5_2:16736686-16736705 | Msa0760330:CDS | 40.0% | |
TGAGGCTGTAATAAAGGAAG+AGG | - | chr5_2:16736723-16736742 | Msa0760330:CDS | 40.0% | |
TCTGCAATTTACTTGGCTAC+AGG | - | chr5_2:16736871-16736890 | Msa0760330:CDS | 40.0% | |
GAACTTTCAACATTCTGAGC+AGG | + | chr5_2:16736904-16736923 | None:intergenic | 40.0% | |
TTCTCACTGTATGACCATGA+TGG | - | chr5_2:16736921-16736940 | Msa0760330:CDS | 40.0% | |
GCATAGTGACTGAGATATGA+AGG | + | chr5_2:16736969-16736988 | None:intergenic | 40.0% | |
TTTGCCGAGAAAATCTTGTG+TGG | - | chr5_2:16737391-16737410 | Msa0760330:five_prime_UTR | 40.0% | |
! | TGGACCAGGACCAAAAATTT+TGG | + | chr5_2:16737549-16737568 | None:intergenic | 40.0% |
AAAGTCGAGAAACACTTGTG+TGG | + | chr5_2:16737569-16737588 | None:intergenic | 40.0% | |
GAGAGAGAGAGAGAGAGAAA+TGG | - | chr5_2:16735509-16735528 | Msa0760330:three_prime_UTR | 45.0% | |
GAAGAACCAAAAGAAGCAGG+AGG | - | chr5_2:16735563-16735582 | Msa0760330:three_prime_UTR | 45.0% | |
! | GTGAATCCTCCTGCTTCTTT+TGG | + | chr5_2:16735572-16735591 | None:intergenic | 45.0% |
GTTGAGAAGAAAGTAGGCGA+CGG | + | chr5_2:16735643-16735662 | None:intergenic | 45.0% | |
TCGCCTACTTTCTTCTCAAC+AGG | - | chr5_2:16735643-16735662 | Msa0760330:CDS | 45.0% | |
CCACCTGTTGAGAAGAAAGT+AGG | + | chr5_2:16735649-16735668 | None:intergenic | 45.0% | |
CCTACTTTCTTCTCAACAGG+TGG | - | chr5_2:16735646-16735665 | Msa0760330:CDS | 45.0% | |
CGAGAATCTCAGAGATTGTG+AGG | + | chr5_2:16735707-16735726 | None:intergenic | 45.0% | |
GTAGACAAAGGAAGCGATGA+GGG | + | chr5_2:16735739-16735758 | None:intergenic | 45.0% | |
! | TGGTCAGATATTTTCGGTGG+TGG | + | chr5_2:16735864-16735883 | None:intergenic | 45.0% |
AGTTATGTCCATGGAAGACG+AGG | - | chr5_2:16735887-16735906 | Msa0760330:CDS | 45.0% | |
TACTCGCTTGAATCCAAGCT+TGG | - | chr5_2:16735948-16735967 | Msa0760330:CDS | 45.0% | |
GTTACTGGAAGGTCACTTGA+AGG | - | chr5_2:16736017-16736036 | Msa0760330:CDS | 45.0% | |
GGTATCTGCACAAAGCCTAT+CGG | + | chr5_2:16736098-16736117 | None:intergenic | 45.0% | |
GCTTGCAACCAAACAACCTT+CGG | + | chr5_2:16736183-16736202 | None:intergenic | 45.0% | |
TTGGTTGCAAGCACCAATAG+AGG | - | chr5_2:16736191-16736210 | Msa0760330:CDS | 45.0% | |
GGAGTTGAATCTTACAACGG+GGG | + | chr5_2:16736282-16736301 | None:intergenic | 45.0% | |
CGGAGTTGAATCTTACAACG+GGG | + | chr5_2:16736283-16736302 | None:intergenic | 45.0% | |
GCGGAGTTGAATCTTACAAC+GGG | + | chr5_2:16736284-16736303 | None:intergenic | 45.0% | |
GGCGGAGTTGAATCTTACAA+CGG | + | chr5_2:16736285-16736304 | None:intergenic | 45.0% | |
! | CAACTGAGAAGCTCTTTTGG+CGG | + | chr5_2:16736303-16736322 | None:intergenic | 45.0% |
TTGTTCGGACAAGAAAGCTG+CGG | - | chr5_2:16736660-16736679 | Msa0760330:CDS | 45.0% | |
CGGCAGTGAATTGGATTGAA+GGG | - | chr5_2:16736680-16736699 | Msa0760330:CDS | 45.0% | |
GTGAATTGGATTGAAGGGAG+AGG | - | chr5_2:16736685-16736704 | Msa0760330:CDS | 45.0% | |
GGTGTGTGAGGCTGTAATAA+AGG | - | chr5_2:16736717-16736736 | Msa0760330:CDS | 45.0% | |
GGCTGTAATAAAGGAAGAGG+TGG | - | chr5_2:16736726-16736745 | Msa0760330:CDS | 45.0% | |
!! | GAAAGTGCTGAAGACTAGTG+TGG | - | chr5_2:16736753-16736772 | Msa0760330:CDS | 45.0% |
GAAGACTAGTGTGGAGTCTT+TGG | - | chr5_2:16736762-16736781 | Msa0760330:CDS | 45.0% | |
!! | AAACCTTACTGGTTCAGCCA+TGG | - | chr5_2:16736804-16736823 | Msa0760330:CDS | 45.0% |
! | ATGATGGAAGCCGTGAATGA+CGG | - | chr5_2:16736937-16736956 | Msa0760330:CDS | 45.0% |
AAGGTCCTTTCCGTCATTCA+CGG | + | chr5_2:16736950-16736969 | None:intergenic | 45.0% | |
AGTCACTATGCCTTCCATTG+AGG | - | chr5_2:16736978-16736997 | Msa0760330:CDS | 45.0% | |
ACTATGCCTTCCATTGAGGT+GGG | - | chr5_2:16736982-16737001 | Msa0760330:CDS | 45.0% | |
TACTATAGTTGCCAGTTGCC+TGG | + | chr5_2:16737103-16737122 | None:intergenic | 45.0% | |
! | GTGGCTTTTAACAAGTTGCC+CGG | + | chr5_2:16737175-16737194 | None:intergenic | 45.0% |
ACCAAAGTTGCTTCATGAGC+TGG | - | chr5_2:16737225-16737244 | Msa0760330:CDS | 45.0% | |
TCCAGCTCATGAAGCAACTT+TGG | + | chr5_2:16737229-16737248 | None:intergenic | 45.0% | |
CGGCAAAGTCGCATACTAAA+TGG | + | chr5_2:16737378-16737397 | None:intergenic | 45.0% | |
GAGAGAAGAGAAGAGAGAGA+AGG | - | chr5_2:16737498-16737517 | Msa0760330:five_prime_UTR | 45.0% | |
!!! | AAAATTTAATGTTATTTTTT+TGG | + | chr5_2:16735295-16735314 | None:intergenic | 5.0% |
AAGGAGTTCAGCTCGGTTCA+GGG | + | chr5_2:16735427-16735446 | None:intergenic | 50.0% | |
AAAGGAGTTCAGCTCGGTTC+AGG | + | chr5_2:16735428-16735447 | None:intergenic | 50.0% | |
TCTCTCTCTCTCTCTCTCTC+TGG | + | chr5_2:16735503-16735522 | None:intergenic | 50.0% | |
TCTCAGAGATTGTGAGGACG+TGG | + | chr5_2:16735701-16735720 | None:intergenic | 50.0% | |
GGTAGACAAAGGAAGCGATG+AGG | + | chr5_2:16735740-16735759 | None:intergenic | 50.0% | |
! | TTCGGTGGTGGTAGCTTCTT+CGG | + | chr5_2:16735852-16735871 | None:intergenic | 50.0% |
TATGTCCATGGAAGACGAGG+AGG | - | chr5_2:16735890-16735909 | Msa0760330:CDS | 50.0% | |
GCCGACGTGCAGCAAATATT+AGG | - | chr5_2:16735976-16735995 | Msa0760330:CDS | 50.0% | |
GTCACTTGAAGGTCTACCGA+TGG | - | chr5_2:16736028-16736047 | Msa0760330:CDS | 50.0% | |
CTTGAAGGTCTACCGATGGA+AGG | - | chr5_2:16736032-16736051 | Msa0760330:CDS | 50.0% | |
TCATTCCCGTCGAGCAACAA+AGG | + | chr5_2:16736137-16736156 | None:intergenic | 50.0% | |
TGCAACCAAACAACCTTCGG+TGG | + | chr5_2:16736180-16736199 | None:intergenic | 50.0% | |
TTGTTCAACGGGCGATGCAA+TGG | - | chr5_2:16736543-16736562 | Msa0760330:CDS | 50.0% | |
TGTTCAACGGGCGATGCAAT+GGG | - | chr5_2:16736544-16736563 | Msa0760330:CDS | 50.0% | |
CGATGCAATGGGGATGAACA+TGG | - | chr5_2:16736555-16736574 | Msa0760330:CDS | 50.0% | |
AGAAAGCTGCGGCAGTGAAT+TGG | - | chr5_2:16736671-16736690 | Msa0760330:CDS | 50.0% | |
GCGGCAGTGAATTGGATTGA+AGG | - | chr5_2:16736679-16736698 | Msa0760330:CDS | 50.0% | |
TGAAGGGAGAGGGAAATCAG+TGG | - | chr5_2:16736696-16736715 | Msa0760330:CDS | 50.0% | |
AGGGAAATCAGTGGTGTGTG+AGG | - | chr5_2:16736705-16736724 | Msa0760330:CDS | 50.0% | |
GTCATTCACGGCTTCCATCA+TGG | + | chr5_2:16736938-16736957 | None:intergenic | 50.0% | |
CACTATGCCTTCCATTGAGG+TGG | - | chr5_2:16736981-16737000 | Msa0760330:CDS | 50.0% | |
GGAGCTAGTAAAGAGACTCC+AGG | - | chr5_2:16737069-16737088 | Msa0760330:CDS | 50.0% | |
AGACTCCAGGAGCAAATTCC+AGG | - | chr5_2:16737082-16737101 | Msa0760330:CDS | 50.0% | |
! | AGTTGCCTGGAATTTGCTCC+TGG | + | chr5_2:16737090-16737109 | None:intergenic | 50.0% |
AGGAGCAAATTCCAGGCAAC+TGG | - | chr5_2:16737089-16737108 | Msa0760330:CDS | 50.0% | |
CTCATGTCTGCAATTGCAGC+CGG | - | chr5_2:16737153-16737172 | Msa0760330:CDS | 50.0% | |
TCATGTCTGCAATTGCAGCC+GGG | - | chr5_2:16737154-16737173 | Msa0760330:CDS | 50.0% | |
GAGAAACACTTGTGTGGACC+AGG | + | chr5_2:16737563-16737582 | None:intergenic | 50.0% | |
AGGAGTTCAGCTCGGTTCAG+GGG | + | chr5_2:16735426-16735445 | None:intergenic | 55.0% | |
! | CGTGGAGAGGTGTAGAGGTT+CGG | + | chr5_2:16735683-16735702 | None:intergenic | 55.0% |
GAGATTGTGAGGACGTGGAG+AGG | + | chr5_2:16735696-16735715 | None:intergenic | 55.0% | |
CTTCGGCAAGACACCTTGAG+TGG | + | chr5_2:16735835-16735854 | None:intergenic | 55.0% | |
GACAACCTCCTCGTCTTCCA+TGG | + | chr5_2:16735898-16735917 | None:intergenic | 55.0% | |
GTTGTCAGTGCAGTGGTGTC+AGG | - | chr5_2:16735912-16735931 | Msa0760330:CDS | 55.0% | |
ACGTCGGCAATCTCCAAGCT+TGG | + | chr5_2:16735964-16735983 | None:intergenic | 55.0% | |
CAGTAACTCTCTCCACCGCT+TGG | + | chr5_2:16736004-16736023 | None:intergenic | 55.0% | |
CAAGCGGTGGAGAGAGTTAC+TGG | - | chr5_2:16736002-16736021 | Msa0760330:CDS | 55.0% | |
CGGTGGAGAGAGTTACTGGA+AGG | - | chr5_2:16736006-16736025 | Msa0760330:CDS | 55.0% | |
CAGTGTTGCGAGATGCCGAT+AGG | - | chr5_2:16736080-16736099 | Msa0760330:CDS | 55.0% | |
! | AGGCTTTGTGCAGATACCCG+TGG | - | chr5_2:16736100-16736119 | Msa0760330:CDS | 55.0% |
! | GGCTTTGTGCAGATACCCGT+GGG | - | chr5_2:16736101-16736120 | Msa0760330:CDS | 55.0% |
GCTCGACGGGAATGAGTACA+CGG | - | chr5_2:16736142-16736161 | Msa0760330:CDS | 55.0% | |
! | GAATGAGTACACGGTGCCGA+TGG | - | chr5_2:16736151-16736170 | Msa0760330:CDS | 55.0% |
CAACCTTCGGTGGTTGCCAT+CGG | + | chr5_2:16736170-16736189 | None:intergenic | 55.0% | |
GGCAACCACCGAAGGTTGTT+TGG | - | chr5_2:16736172-16736191 | Msa0760330:CDS | 55.0% | |
GAATCTTACAACGGGGGCTC+TGG | + | chr5_2:16736276-16736295 | None:intergenic | 55.0% | |
GTTCAACGGGCGATGCAATG+GGG | - | chr5_2:16736545-16736564 | Msa0760330:CDS | 55.0% | |
CAGCCATGGCTGAACCAGTA+AGG | + | chr5_2:16736810-16736829 | None:intergenic | 55.0% | |
!! | CTTACTGGTTCAGCCATGGC+TGG | - | chr5_2:16736808-16736827 | Msa0760330:CDS | 55.0% |
! | GGAAGCCGTGAATGACGGAA+AGG | - | chr5_2:16736942-16736961 | Msa0760330:CDS | 55.0% |
ACTGTGCCCACCTCAATGGA+AGG | + | chr5_2:16736991-16737010 | None:intergenic | 55.0% | |
TCCATTGAGGTGGGCACAGT+AGG | - | chr5_2:16736991-16737010 | Msa0760330:CDS | 55.0% | |
TCCTACTGTGCCCACCTCAA+TGG | + | chr5_2:16736995-16737014 | None:intergenic | 55.0% | |
ATTGAGGTGGGCACAGTAGG+AGG | - | chr5_2:16736994-16737013 | Msa0760330:CDS | 55.0% | |
TTGAGGTGGGCACAGTAGGA+GGG | - | chr5_2:16736995-16737014 | Msa0760330:CDS | 55.0% | |
GTAGCTGCTTCAGTCCTTGC+AGG | - | chr5_2:16737120-16737139 | Msa0760330:CDS | 55.0% | |
TGAGTGAGAGCTCTCCTGCA+AGG | + | chr5_2:16737137-16737156 | None:intergenic | 55.0% | |
! | GAGGACGTGGAGAGGTGTAG+AGG | + | chr5_2:16735688-16735707 | None:intergenic | 60.0% |
CGAGGAGGTTGTCAGTGCAG+TGG | - | chr5_2:16735905-16735924 | Msa0760330:CDS | 60.0% | |
! | CAGATACCCGTGGGTGTTGC+CGG | - | chr5_2:16736110-16736129 | Msa0760330:CDS | 60.0% |
AAAGGACCGGCAACACCCAC+GGG | + | chr5_2:16736119-16736138 | None:intergenic | 60.0% | |
CAAAGGACCGGCAACACCCA+CGG | + | chr5_2:16736120-16736139 | None:intergenic | 60.0% | |
GCCGGTCCTTTGTTGCTCGA+CGG | - | chr5_2:16736128-16736147 | Msa0760330:CDS | 60.0% | |
CCCGTCGAGCAACAAAGGAC+CGG | + | chr5_2:16736132-16736151 | None:intergenic | 60.0% | |
CCGGTCCTTTGTTGCTCGAC+GGG | - | chr5_2:16736129-16736148 | Msa0760330:CDS | 60.0% | |
CATTCCGTCGCGGAGCACAA+CGG | + | chr5_2:16736252-16736271 | None:intergenic | 60.0% | |
TCAGCCATGGCTGGTGCTCT+TGG | - | chr5_2:16736817-16736836 | Msa0760330:CDS | 60.0% | |
TGAGGTGGGCACAGTAGGAG+GGG | - | chr5_2:16736996-16737015 | Msa0760330:CDS | 60.0% | |
! | GTGCCGATGGCAACCACCGA+AGG | - | chr5_2:16736164-16736183 | Msa0760330:CDS | 65.0% |
!! | CACAACGGCGGAAGCACCAC+CGG | + | chr5_2:16736237-16736256 | None:intergenic | 65.0% |
! | GGGCTCTGGTCATTCCGTCG+CGG | + | chr5_2:16736262-16736281 | None:intergenic | 65.0% |
GCCATGGCTGGTGCTCTTGG+CGG | - | chr5_2:16736820-16736839 | Msa0760330:CDS | 65.0% | |
GAGGTGGGCACAGTAGGAGG+GGG | - | chr5_2:16736997-16737016 | Msa0760330:CDS | 65.0% | |
TCCGCCGTTGTGCTCCGCGA+CGG | - | chr5_2:16736245-16736264 | Msa0760330:CDS | 70.0% | |
TCCGTCGCGGAGCACAACGG+CGG | + | chr5_2:16736249-16736268 | None:intergenic | 70.0% | |
!! | GCCGCCAAGAGCACCAGCCA+TGG | + | chr5_2:16736824-16736843 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_2 | gene | 16735189 | 16737662 | 16735189 | ID=Msa0760330;Name=Msa0760330 |
chr5_2 | mRNA | 16735189 | 16737662 | 16735189 | ID=Msa0760330-mRNA-1;Parent=Msa0760330;Name=Msa0760330-mRNA-1;_AED=0.02;_eAED=0.02;_QI=339|1|1|1|1|1|2|420|540 |
chr5_2 | exon | 16735189 | 16736380 | 16735189 | ID=Msa0760330-mRNA-1:exon:7398;Parent=Msa0760330-mRNA-1 |
chr5_2 | exon | 16736473 | 16737662 | 16736473 | ID=Msa0760330-mRNA-1:exon:7397;Parent=Msa0760330-mRNA-1 |
chr5_2 | five_prime_UTR | 16737324 | 16737662 | 16737324 | ID=Msa0760330-mRNA-1:five_prime_utr;Parent=Msa0760330-mRNA-1 |
chr5_2 | CDS | 16736473 | 16737323 | 16736473 | ID=Msa0760330-mRNA-1:cds;Parent=Msa0760330-mRNA-1 |
chr5_2 | CDS | 16735609 | 16736380 | 16735609 | ID=Msa0760330-mRNA-1:cds;Parent=Msa0760330-mRNA-1 |
chr5_2 | three_prime_UTR | 16735189 | 16735608 | 16735189 | ID=Msa0760330-mRNA-1:three_prime_utr;Parent=Msa0760330-mRNA-1 |
Gene Sequence |
Protein sequence |