Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760760 | sp|P52581|IFRH_LUPAL | 85.531 | 311 | 44 | 1 | 1 | 310 | 1 | 311 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760760 | B7FJQ2 | 97.428 | 311 | 8 | 0 | 1 | 311 | 1 | 311 | 0.0 | 634 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0719210 | Msa0760760 | 0.865225 | 6.889158e-65 | -8.615850e-47 |
| Msa0760760 | Msa0802290 | 0.812223 | 4.722831e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760760 | MtrunA17_Chr5g0409641 | 97.428 | 311 | 8 | 0 | 1 | 311 | 1 | 311 | 0.0 | 634 |
| Msa0760760 | MtrunA17_Chr5g0409651 | 93.569 | 311 | 20 | 0 | 1 | 311 | 1 | 311 | 0.0 | 612 |
| Msa0760760 | MtrunA17_Chr8g0369391 | 75.884 | 311 | 74 | 1 | 1 | 310 | 1 | 311 | 1.90e-179 | 498 |
| Msa0760760 | MtrunA17_Chr3g0141691 | 47.557 | 307 | 153 | 3 | 3 | 307 | 4 | 304 | 3.56e-95 | 284 |
| Msa0760760 | MtrunA17_Chr5g0404471 | 47.742 | 310 | 154 | 3 | 3 | 310 | 5 | 308 | 1.23e-94 | 282 |
| Msa0760760 | MtrunA17_Chr3g0141681 | 47.249 | 309 | 153 | 4 | 3 | 307 | 4 | 306 | 3.48e-93 | 279 |
| Msa0760760 | MtrunA17_Chr3g0144701 | 47.249 | 309 | 155 | 4 | 4 | 310 | 9 | 311 | 6.72e-91 | 273 |
| Msa0760760 | MtrunA17_Chr4g0035131 | 42.997 | 307 | 167 | 3 | 4 | 308 | 45 | 345 | 1.43e-79 | 246 |
| Msa0760760 | MtrunA17_Chr5g0404481 | 41.433 | 321 | 168 | 5 | 3 | 310 | 4 | 317 | 1.44e-78 | 242 |
| Msa0760760 | MtrunA17_Chr5g0404511 | 41.433 | 321 | 168 | 5 | 3 | 310 | 4 | 317 | 2.00e-78 | 241 |
| Msa0760760 | MtrunA17_Chr3g0078901 | 42.628 | 312 | 159 | 8 | 2 | 307 | 4 | 301 | 2.46e-76 | 236 |
| Msa0760760 | MtrunA17_Chr4g0035121 | 41.290 | 310 | 174 | 3 | 1 | 307 | 1 | 305 | 3.99e-76 | 235 |
| Msa0760760 | MtrunA17_Chr4g0035111 | 39.806 | 309 | 178 | 3 | 2 | 308 | 5 | 307 | 8.50e-75 | 233 |
| Msa0760760 | MtrunA17_Chr3g0078831 | 41.290 | 310 | 166 | 7 | 2 | 307 | 4 | 301 | 5.09e-71 | 222 |
| Msa0760760 | MtrunA17_Chr1g0198771 | 33.651 | 315 | 196 | 6 | 1 | 310 | 11 | 317 | 5.50e-57 | 187 |
| Msa0760760 | MtrunA17_Chr3g0078941 | 37.438 | 203 | 117 | 5 | 108 | 307 | 12 | 207 | 1.88e-38 | 135 |
| Msa0760760 | MtrunA17_Chr3g0078951 | 42.202 | 109 | 54 | 3 | 3 | 110 | 5 | 105 | 2.46e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760760 | AT1G32100.1 | 70.130 | 308 | 92 | 0 | 3 | 310 | 9 | 316 | 3.27e-171 | 477 |
| Msa0760760 | AT4G13660.1 | 68.831 | 308 | 96 | 0 | 3 | 310 | 9 | 316 | 4.66e-164 | 459 |
| Msa0760760 | AT4G13660.2 | 68.831 | 308 | 96 | 0 | 3 | 310 | 9 | 316 | 4.66e-164 | 459 |
| Msa0760760 | AT1G75290.1 | 45.687 | 313 | 160 | 4 | 3 | 311 | 5 | 311 | 1.37e-90 | 273 |
| Msa0760760 | AT1G75290.2 | 45.687 | 313 | 160 | 4 | 3 | 311 | 32 | 338 | 4.20e-90 | 272 |
| Msa0760760 | AT1G75280.1 | 45.833 | 312 | 160 | 4 | 3 | 311 | 5 | 310 | 5.07e-89 | 268 |
| Msa0760760 | AT4G39230.1 | 44.695 | 311 | 162 | 4 | 3 | 310 | 4 | 307 | 1.07e-84 | 257 |
| Msa0760760 | AT1G75300.1 | 44.037 | 327 | 154 | 7 | 3 | 310 | 5 | 321 | 6.04e-84 | 256 |
| Msa0760760 | AT1G19540.1 | 42.765 | 311 | 170 | 4 | 4 | 310 | 3 | 309 | 1.50e-77 | 239 |
| Msa0760760 | AT1G19540.2 | 44.574 | 258 | 137 | 3 | 4 | 259 | 3 | 256 | 3.27e-69 | 216 |
| Msa0760760 | AT4G34540.1 | 39.423 | 312 | 166 | 5 | 3 | 307 | 7 | 302 | 3.58e-67 | 213 |
Find 76 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTTCCTACCTTCAGAATT+TGG | 0.123553 | 5_2:-17356447 | Msa0760760:CDS |
| GACGTTCCCTGCATCCTTGA+TGG | 0.243342 | 5_2:+17357577 | None:intergenic |
| AGTTTAATTTATCCTCAATA+TGG | 0.251134 | 5_2:+17357930 | None:intergenic |
| GAGAAATGGGAGAAACTTAT+TGG | 0.253360 | 5_2:-17355953 | Msa0760760:CDS |
| TCATCAAATGTGACTCTTCC+TGG | 0.258900 | 5_2:+17356390 | None:intergenic |
| GTACTTCAACGTCCAGATAT+AGG | 0.328641 | 5_2:-17357788 | Msa0760760:CDS |
| TCAGTTTCAAGCCCTATATC+TGG | 0.341670 | 5_2:+17357776 | None:intergenic |
| AAGAAAGTCTTGTTCGGATA+TGG | 0.342755 | 5_2:+17355910 | None:intergenic |
| AAAGAGAGCTAGTTGAGAAA+TGG | 0.344521 | 5_2:-17355967 | Msa0760760:CDS |
| TACTTCAACGTCCAGATATA+GGG | 0.350833 | 5_2:-17357787 | Msa0760760:CDS |
| TTGATGAGAAAATGACTATA+AGG | 0.356440 | 5_2:-17356374 | Msa0760760:CDS |
| AAGAGAGCTAGTTGAGAAAT+GGG | 0.369973 | 5_2:-17355966 | Msa0760760:CDS |
| CGAGACAAGGTTGTTCTCTA+TGG | 0.382332 | 5_2:-17356246 | Msa0760760:CDS |
| GTTGTTATTTGCACCATGTC+TGG | 0.392486 | 5_2:-17357650 | Msa0760760:CDS |
| TGCCGGTAACCTCTCTCAAA+TGG | 0.408456 | 5_2:-17356286 | Msa0760760:CDS |
| TGAACAAGACAATATATCTA+AGG | 0.409071 | 5_2:-17356012 | Msa0760760:CDS |
| TTGAGGATAAATTAAACTAT+AGG | 0.412531 | 5_2:-17357925 | Msa0760760:five_prime_UTR |
| CTTCTTTCATTCAAGAAACT+AGG | 0.431002 | 5_2:-17357740 | Msa0760760:CDS |
| TGGAATGGACCCAGCTCTCA+TGG | 0.461798 | 5_2:-17356427 | Msa0760760:CDS |
| AGAAATGCCCCACTCCTACT+TGG | 0.468869 | 5_2:+17355702 | None:intergenic |
| TCCCATTTGAGAGAGGTTAC+CGG | 0.471634 | 5_2:+17356284 | None:intergenic |
| ATGCGTGTGTATTGCACCTC+TGG | 0.472227 | 5_2:+17355608 | None:intergenic |
| CCACTCCTACTTGGCTTGCA+AGG | 0.479291 | 5_2:+17355711 | None:intergenic |
| GCCGGTAACCTCTCTCAAAT+GGG | 0.483634 | 5_2:-17356285 | Msa0760760:CDS |
| AGTGCATGTCCCATGAGAGC+TGG | 0.487799 | 5_2:+17356417 | None:intergenic |
| CAAACTTGTTGAAGCCATCA+AGG | 0.490014 | 5_2:-17357591 | Msa0760760:CDS |
| ATTGTCTTGTTCAATGTTCG+AGG | 0.498830 | 5_2:+17356022 | None:intergenic |
| GTTGAAGCCATCAAGGATGC+AGG | 0.499395 | 5_2:-17357584 | Msa0760760:CDS |
| AAGAGCAAGGTTCTAGTTGT+GGG | 0.501694 | 5_2:-17357875 | Msa0760760:CDS |
| AGAGAGGTTACCGGCAAAGT+AGG | 0.504148 | 5_2:+17356293 | None:intergenic |
| GGAAGAAAGAAAGTCTTGTT+CGG | 0.504559 | 5_2:+17355904 | None:intergenic |
| GACTTTCTTTCTTCCATGAA+AGG | 0.513933 | 5_2:-17355896 | Msa0760760:intron |
| CCTACCTTCAGAATTTGGAA+TGG | 0.527632 | 5_2:-17356442 | Msa0760760:CDS |
| GACACATGATATCCATATTG+AGG | 0.535746 | 5_2:-17357942 | Msa0760760:five_prime_UTR |
| AACAATAATGGGAAAGAGCA+AGG | 0.541317 | 5_2:-17357888 | Msa0760760:exon |
| GTGCATGTCCCATGAGAGCT+GGG | 0.542186 | 5_2:+17356418 | None:intergenic |
| TTGTCTTGTTCAATGTTCGA+GGG | 0.543328 | 5_2:+17356023 | None:intergenic |
| GACTATAAGGAAAACAATTG+AGG | 0.545612 | 5_2:-17356361 | Msa0760760:CDS |
| GATGTAAGTGAAAGGAATGT+TGG | 0.548414 | 5_2:+17356335 | None:intergenic |
| AAAGTAGGCCGCAAAACAGT+TGG | 0.553595 | 5_2:+17356308 | None:intergenic |
| GAAACTAGGTGCTCATCTTG+TGG | 0.554098 | 5_2:-17357726 | Msa0760760:CDS |
| TTGGACCTTGCAAGCCAAGT+AGG | 0.556786 | 5_2:-17355716 | Msa0760760:CDS |
| ACTCTTTCCTCCACGAGACA+AGG | 0.562903 | 5_2:-17356259 | Msa0760760:CDS |
| AAAGAGCAAGGTTCTAGTTG+TGG | 0.563658 | 5_2:-17357876 | Msa0760760:CDS |
| ATGGGACATGCACTTGAACC+AGG | 0.569918 | 5_2:-17356408 | Msa0760760:CDS |
| GGATATCATGTGTCAAGCTA+AGG | 0.570190 | 5_2:+17357951 | None:intergenic |
| TATGGCGACGGCAATGTCAA+AGG | 0.572714 | 5_2:-17356228 | Msa0760760:intron |
| CCTTGCAAGCCAAGTAGGAG+TGG | 0.574853 | 5_2:-17355711 | Msa0760760:CDS |
| TGAAATACGTGATGGTGAAG+AGG | 0.584479 | 5_2:-17355645 | Msa0760760:CDS |
| CTTGCAAGCCAAGTAGGAGT+GGG | 0.587692 | 5_2:-17355710 | Msa0760760:CDS |
| GGAATGGACCCAGCTCTCAT+GGG | 0.590644 | 5_2:-17356426 | Msa0760760:CDS |
| ATCTGGACGTTGAAGTACAT+AGG | 0.593407 | 5_2:+17357793 | None:intergenic |
| GTAGGCCGCAAAACAGTTGG+CGG | 0.595977 | 5_2:+17356311 | None:intergenic |
| CAACTAGCTCTCTTTGAGTG+AGG | 0.596234 | 5_2:+17355975 | None:intergenic |
| TATTGGTAGGCGAATAGTGA+AGG | 0.601012 | 5_2:-17357840 | Msa0760760:CDS |
| GAGCAAGGTTCTAGTTGTGG+GGG | 0.603039 | 5_2:-17357873 | Msa0760760:CDS |
| CTAGGTGCTCATCTTGTGGA+AGG | 0.605859 | 5_2:-17357722 | Msa0760760:CDS |
| GGGTCCATTCCAAATTCTGA+AGG | 0.606637 | 5_2:+17356438 | None:intergenic |
| CCATTCCAAATTCTGAAGGT+AGG | 0.607236 | 5_2:+17356442 | None:intergenic |
| TTGAAGCCATCAAGGATGCA+GGG | 0.611173 | 5_2:-17357583 | Msa0760760:CDS |
| TAGAGAACAACCTTGTCTCG+TGG | 0.612182 | 5_2:+17356249 | None:intergenic |
| GGGGTACTGGGTATATTGGT+AGG | 0.615297 | 5_2:-17357853 | Msa0760760:CDS |
| TCGAAAATGAACTCCAGACA+TGG | 0.615339 | 5_2:+17357637 | None:intergenic |
| AAGGTTGTTCTCTATGGCGA+CGG | 0.618470 | 5_2:-17356240 | Msa0760760:CDS |
| GGCATCAAAGCTTTATCCAG+AGG | 0.622118 | 5_2:-17355624 | Msa0760760:CDS |
| AGAGTGTTCCCATTTGAGAG+AGG | 0.622439 | 5_2:+17356277 | None:intergenic |
| AGAGGTGCAATACACACGCA+TGG | 0.626180 | 5_2:-17355606 | Msa0760760:CDS |
| TTGGCGGAGATGTAAGTGAA+AGG | 0.629490 | 5_2:+17356327 | None:intergenic |
| TATAGGGCTTGAAACTGAGA+AGG | 0.631649 | 5_2:-17357771 | Msa0760760:CDS |
| GTGAAGGCAAGTTTAGAACA+AGG | 0.641128 | 5_2:-17357824 | Msa0760760:CDS |
| CAAGGATGCAGGGAACGTCA+AGG | 0.642191 | 5_2:-17357573 | Msa0760760:intron |
| GGTAGATGCTGTGAAACTAG+TGG | 0.656690 | 5_2:-17357675 | Msa0760760:CDS |
| AGAGCAAGGTTCTAGTTGTG+GGG | 0.663323 | 5_2:-17357874 | Msa0760760:CDS |
| TTGCAAGCCAAGTAGGAGTG+GGG | 0.683571 | 5_2:-17355709 | Msa0760760:CDS |
| AGCAAGGTTCTAGTTGTGGG+GGG | 0.685169 | 5_2:-17357872 | Msa0760760:CDS |
| AGAACAACCTTGTCTCGTGG+AGG | 0.687370 | 5_2:+17356252 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATAAAAAAAAAAAAAA+AGG | - | chr5_2:17356669-17356688 | Msa0760760:intron | 0.0% |
| !! | CTCAAAAAAATAATAATAAA+AGG | + | chr5_2:17355427-17355446 | None:intergenic | 10.0% |
| !!! | CTTTTATTATTATTTTTTTG+AGG | - | chr5_2:17355425-17355444 | Msa0760760:three_prime_UTR | 10.0% |
| !! | TTTCTATACATATTATTATA+TGG | - | chr5_2:17356065-17356084 | Msa0760760:CDS | 10.0% |
| !! | TATGTATATATAATTAAGAT+AGG | + | chr5_2:17356174-17356193 | None:intergenic | 10.0% |
| !!! | GCTAATTTTTTTTTTTTTTT+TGG | + | chr5_2:17356528-17356547 | None:intergenic | 10.0% |
| !!! | TTTATTAAAATTTCTAGAAA+TGG | - | chr5_2:17356700-17356719 | Msa0760760:intron | 10.0% |
| !! | GAATAATAAAAAATATACAT+TGG | - | chr5_2:17357944-17357963 | Msa0760760:five_prime_UTR | 10.0% |
| !! | ATAATAAAAAATATACATTG+GGG | - | chr5_2:17357946-17357965 | Msa0760760:five_prime_UTR | 10.0% |
| !!! | AATAAATACCTCTAAAAAAA+TGG | - | chr5_2:17356599-17356618 | Msa0760760:intron | 15.0% |
| !!! | TTTTTATACCATTTTTTTAG+AGG | + | chr5_2:17356610-17356629 | None:intergenic | 15.0% |
| !! | TAAAATACCTCAAAAAAAAA+GGG | + | chr5_2:17356744-17356763 | None:intergenic | 15.0% |
| !! | AAAATCTATAATTTCATATG+TGG | + | chr5_2:17356784-17356803 | None:intergenic | 15.0% |
| !!! | ATGTTTTATATTTACTATAG+TGG | - | chr5_2:17356919-17356938 | Msa0760760:intron | 15.0% |
| !!! | ATAATTTTATTTTGGGTAAA+GGG | + | chr5_2:17357574-17357593 | None:intergenic | 15.0% |
| !!! | ATTTTAGCTATTTATTTTCT+TGG | + | chr5_2:17357602-17357621 | None:intergenic | 15.0% |
| !!! | ACTCTTCTTTTTATTTTTTT+AGG | - | chr5_2:17357658-17357677 | Msa0760760:CDS | 15.0% |
| !!! | AAATTTGTACTTTTTTTAAG+AGG | - | chr5_2:17357897-17357916 | Msa0760760:exon | 15.0% |
| !!! | GTTTAATGAAATCATTTTTT+GGG | + | chr5_2:17358014-17358033 | None:intergenic | 15.0% |
| !!! | TGTTTAATGAAATCATTTTT+TGG | + | chr5_2:17358015-17358034 | None:intergenic | 15.0% |
| !!! | AGTTTAATTTATCCTCAATA+TGG | + | chr5_2:17355508-17355527 | None:intergenic | 20.0% |
| !! | TTGAGGATAAATTAAACTAT+AGG | - | chr5_2:17355510-17355529 | Msa0760760:three_prime_UTR | 20.0% |
| !!! | TTTTTCTAATCATCAAAGTT+TGG | - | chr5_2:17355739-17355758 | Msa0760760:intron | 20.0% |
| !!! | CATTTTTCTTAGACAAATAT+CGG | - | chr5_2:17355898-17355917 | Msa0760760:CDS | 20.0% |
| !!! | TAAAGGTTTGAAAAAGTTTT+AGG | + | chr5_2:17355980-17355999 | None:intergenic | 20.0% |
| !!! | TATCAGTACTTTTAAACTAA+AGG | + | chr5_2:17355997-17356016 | None:intergenic | 20.0% |
| !! | AATTAGCAAATAATTGATCA+AGG | - | chr5_2:17356541-17356560 | Msa0760760:intron | 20.0% |
| !!! | TTTAGAGGTATTTATTAGAA+TGG | + | chr5_2:17356595-17356614 | None:intergenic | 20.0% |
| !!! | TAAAATTTCTAGAAATGGTA+AGG | - | chr5_2:17356705-17356724 | Msa0760760:intron | 20.0% |
| !!! | AAAATTTCTAGAAATGGTAA+GGG | - | chr5_2:17356706-17356725 | Msa0760760:intron | 20.0% |
| !! | CTAAAATACCTCAAAAAAAA+AGG | + | chr5_2:17356745-17356764 | None:intergenic | 20.0% |
| !!! | AAAAAAACTTATTTCTCTCA+TGG | - | chr5_2:17356857-17356876 | Msa0760760:intron | 20.0% |
| !!! | AAAAAACTTATTTCTCTCAT+GGG | - | chr5_2:17356858-17356877 | Msa0760760:intron | 20.0% |
| !!! | AATGTTAACTATCTTTTCTA+AGG | + | chr5_2:17357242-17357261 | None:intergenic | 20.0% |
| !! | ACAATAAGATATATGATATG+AGG | - | chr5_2:17357316-17357335 | Msa0760760:intron | 20.0% |
| !!! | CATAATTTTATTTTGGGTAA+AGG | + | chr5_2:17357575-17357594 | None:intergenic | 20.0% |
| !!! | GGTGTACATAATTTTATTTT+GGG | + | chr5_2:17357581-17357600 | None:intergenic | 20.0% |
| !!! | TGGTGTACATAATTTTATTT+TGG | + | chr5_2:17357582-17357601 | None:intergenic | 20.0% |
| !!! | TTCTATCATATTTTCTATGA+AGG | - | chr5_2:17357752-17357771 | Msa0760760:CDS | 20.0% |
| !!! | TCTATCATATTTTCTATGAA+GGG | - | chr5_2:17357753-17357772 | Msa0760760:CDS | 20.0% |
| ! | ACAAGAGAGAAAAACAATAA+TGG | - | chr5_2:17355535-17355554 | Msa0760760:three_prime_UTR | 25.0% |
| ! | CAAGAGAGAAAAACAATAAT+GGG | - | chr5_2:17355536-17355555 | Msa0760760:three_prime_UTR | 25.0% |
| !!! | GAAAAAGTTTTAGGAACTAA+AGG | + | chr5_2:17355971-17355990 | None:intergenic | 25.0% |
| ! | TCAACATATTCAACACTATT+TGG | + | chr5_2:17356228-17356247 | None:intergenic | 25.0% |
| ! | TGATTCAATCATTTCATCAA+GGG | + | chr5_2:17356383-17356402 | None:intergenic | 25.0% |
| ! | TTGATTCAATCATTTCATCA+AGG | + | chr5_2:17356384-17356403 | None:intergenic | 25.0% |
| !! | AGTTCAAGTATTGTATTGAA+TGG | - | chr5_2:17356431-17356450 | Msa0760760:CDS | 25.0% |
| !! | GTTCAAGTATTGTATTGAAT+GGG | - | chr5_2:17356432-17356451 | Msa0760760:CDS | 25.0% |
| ! | ATAATTTCATATGTGGTCAA+AGG | + | chr5_2:17356777-17356796 | None:intergenic | 25.0% |
| !! | AATTTTATCGAAAGCTATAG+TGG | - | chr5_2:17356893-17356912 | Msa0760760:intron | 25.0% |
| ! | TTGATGAGAAAATGACTATA+AGG | - | chr5_2:17357061-17357080 | Msa0760760:intron | 25.0% |
| ! | TGAACAAGACAATATATCTA+AGG | - | chr5_2:17357423-17357442 | Msa0760760:intron | 25.0% |
| !!! | AATATTTATTGACTCTTGAC+TGG | - | chr5_2:17357682-17357701 | Msa0760760:CDS | 25.0% |
| CTTCTTTCATTCAAGAAACT+AGG | - | chr5_2:17355695-17355714 | Msa0760760:CDS | 30.0% | |
| CAATACAATACTTGAACTTG+CGG | + | chr5_2:17356429-17356448 | None:intergenic | 30.0% | |
| GACTATAAGGAAAACAATTG+AGG | - | chr5_2:17357074-17357093 | Msa0760760:intron | 30.0% | |
| !!! | GCAAATTTTGAAATACGTGA+TGG | - | chr5_2:17357782-17357801 | Msa0760760:CDS | 30.0% |
| GACACATGATATCCATATTG+AGG | - | chr5_2:17355493-17355512 | Msa0760760:three_prime_UTR | 35.0% | |
| ! | AACAATAATGGGAAAGAGCA+AGG | - | chr5_2:17355547-17355566 | Msa0760760:three_prime_UTR | 35.0% |
| TACTTCAACGTCCAGATATA+GGG | - | chr5_2:17355648-17355667 | Msa0760760:CDS | 35.0% | |
| ! | GATAGGTTGAAGATCTCAAT+TGG | + | chr5_2:17356157-17356176 | None:intergenic | 35.0% |
| !! | GCTAATGGTAATTTGTTGTG+TGG | + | chr5_2:17356357-17356376 | None:intergenic | 35.0% |
| ATCAAGGTAAAGAACATGTG+TGG | - | chr5_2:17356557-17356576 | Msa0760760:intron | 35.0% | |
| TCAAGGTAAAGAACATGTGT+GGG | - | chr5_2:17356558-17356577 | Msa0760760:intron | 35.0% | |
| AACATGTGTGGGTGTTTATT+GGG | - | chr5_2:17356569-17356588 | Msa0760760:intron | 35.0% | |
| TAGAAATGGTAAGGGTTCAA+AGG | - | chr5_2:17356714-17356733 | Msa0760760:intron | 35.0% | |
| TTTCATATGTGGTCAAAGGT+TGG | + | chr5_2:17356773-17356792 | None:intergenic | 35.0% | |
| GATGTAAGTGAAAGGAATGT+TGG | + | chr5_2:17357103-17357122 | None:intergenic | 35.0% | |
| !!! | GTTTGTGGCAGTTGTTTTTA+TGG | - | chr5_2:17357346-17357365 | Msa0760760:intron | 35.0% |
| ! | TTGTCTTGTTCAATGTTCGA+GGG | + | chr5_2:17357415-17357434 | None:intergenic | 35.0% |
| ! | ATTGTCTTGTTCAATGTTCG+AGG | + | chr5_2:17357416-17357435 | None:intergenic | 35.0% |
| AAAGAGAGCTAGTTGAGAAA+TGG | - | chr5_2:17357468-17357487 | Msa0760760:intron | 35.0% | |
| AAGAGAGCTAGTTGAGAAAT+GGG | - | chr5_2:17357469-17357488 | Msa0760760:intron | 35.0% | |
| GAGAAATGGGAGAAACTTAT+TGG | - | chr5_2:17357482-17357501 | Msa0760760:intron | 35.0% | |
| !! | AAGAAAGTCTTGTTCGGATA+TGG | + | chr5_2:17357528-17357547 | None:intergenic | 35.0% |
| !! | GGAAGAAAGAAAGTCTTGTT+CGG | + | chr5_2:17357534-17357553 | None:intergenic | 35.0% |
| GACTTTCTTTCTTCCATGAA+AGG | - | chr5_2:17357539-17357558 | Msa0760760:intron | 35.0% | |
| TCTTGACTGGTGTGAAATTT+AGG | - | chr5_2:17357695-17357714 | Msa0760760:CDS | 35.0% | |
| ! | ACTGGTGTGAAATTTAGGTT+TGG | - | chr5_2:17357700-17357719 | Msa0760760:CDS | 35.0% |
| GGATATCATGTGTCAAGCTA+AGG | + | chr5_2:17355487-17355506 | None:intergenic | 40.0% | |
| ! | AAAGAGCAAGGTTCTAGTTG+TGG | - | chr5_2:17355559-17355578 | Msa0760760:three_prime_UTR | 40.0% |
| ! | AAGAGCAAGGTTCTAGTTGT+GGG | - | chr5_2:17355560-17355579 | Msa0760760:three_prime_UTR | 40.0% |
| TATTGGTAGGCGAATAGTGA+AGG | - | chr5_2:17355595-17355614 | Msa0760760:CDS | 40.0% | |
| ! | GTGAAGGCAAGTTTAGAACA+AGG | - | chr5_2:17355611-17355630 | Msa0760760:CDS | 40.0% |
| ATCTGGACGTTGAAGTACAT+AGG | + | chr5_2:17355645-17355664 | None:intergenic | 40.0% | |
| GTACTTCAACGTCCAGATAT+AGG | - | chr5_2:17355647-17355666 | Msa0760760:CDS | 40.0% | |
| TCAGTTTCAAGCCCTATATC+TGG | + | chr5_2:17355662-17355681 | None:intergenic | 40.0% | |
| TATAGGGCTTGAAACTGAGA+AGG | - | chr5_2:17355664-17355683 | Msa0760760:CDS | 40.0% | |
| !! | GTTGTTATTTGCACCATGTC+TGG | - | chr5_2:17355785-17355804 | Msa0760760:intron | 40.0% |
| TCGAAAATGAACTCCAGACA+TGG | + | chr5_2:17355801-17355820 | None:intergenic | 40.0% | |
| !! | CAAACTTGTTGAAGCCATCA+AGG | - | chr5_2:17355844-17355863 | Msa0760760:intron | 40.0% |
| TTTCATCAAGGGACAGCTAA+TGG | + | chr5_2:17356372-17356391 | None:intergenic | 40.0% | |
| GAACATGTGTGGGTGTTTAT+TGG | - | chr5_2:17356568-17356587 | Msa0760760:intron | 40.0% | |
| AAATGGTAAGGGTTCAAAGG+TGG | - | chr5_2:17356717-17356736 | Msa0760760:intron | 40.0% | |
| !!! | AGGTGGACCCTTTTTTTTTG+AGG | - | chr5_2:17356734-17356753 | Msa0760760:intron | 40.0% |
| CGTTTCCTACCTTCAGAATT+TGG | - | chr5_2:17356988-17357007 | Msa0760760:intron | 40.0% | |
| ! | CCATTCCAAATTCTGAAGGT+AGG | + | chr5_2:17356996-17357015 | None:intergenic | 40.0% |
| CCTACCTTCAGAATTTGGAA+TGG | - | chr5_2:17356993-17357012 | Msa0760760:intron | 40.0% | |
| TCATCAAATGTGACTCTTCC+TGG | + | chr5_2:17357048-17357067 | None:intergenic | 40.0% | |
| ! | TTTTGCCAATCATGTGAGCT+AGG | - | chr5_2:17357267-17357286 | Msa0760760:intron | 40.0% |
| TTTGCCAATCATGTGAGCTA+GGG | - | chr5_2:17357268-17357287 | Msa0760760:intron | 40.0% | |
| ! | CTTTGAGTGAGGATGTTTTC+TGG | + | chr5_2:17357452-17357471 | None:intergenic | 40.0% |
| ! | AGGGTGTGTTTTACCTTTCA+TGG | + | chr5_2:17357555-17357574 | None:intergenic | 40.0% |
| ! | TGAAATACGTGATGGTGAAG+AGG | - | chr5_2:17357790-17357809 | Msa0760760:CDS | 40.0% |
| ! | AGAGCAAGGTTCTAGTTGTG+GGG | - | chr5_2:17355561-17355580 | Msa0760760:exon | 45.0% |
| GAAACTAGGTGCTCATCTTG+TGG | - | chr5_2:17355709-17355728 | Msa0760760:CDS | 45.0% | |
| GGTAGATGCTGTGAAACTAG+TGG | - | chr5_2:17355760-17355779 | Msa0760760:intron | 45.0% | |
| TTGAAGCCATCAAGGATGCA+GGG | - | chr5_2:17355852-17355871 | Msa0760760:intron | 45.0% | |
| CATATGTGGTCAAAGGTTGG+TGG | + | chr5_2:17356770-17356789 | None:intergenic | 45.0% | |
| GGGTCCATTCCAAATTCTGA+AGG | + | chr5_2:17357000-17357019 | None:intergenic | 45.0% | |
| TTGGCGGAGATGTAAGTGAA+AGG | + | chr5_2:17357111-17357130 | None:intergenic | 45.0% | |
| AAAGTAGGCCGCAAAACAGT+TGG | + | chr5_2:17357130-17357149 | None:intergenic | 45.0% | |
| TCCCATTTGAGAGAGGTTAC+CGG | + | chr5_2:17357154-17357173 | None:intergenic | 45.0% | |
| ! | AGAGTGTTCCCATTTGAGAG+AGG | + | chr5_2:17357161-17357180 | None:intergenic | 45.0% |
| TAGAGAACAACCTTGTCTCG+TGG | + | chr5_2:17357189-17357208 | None:intergenic | 45.0% | |
| CGAGACAAGGTTGTTCTCTA+TGG | - | chr5_2:17357189-17357208 | Msa0760760:intron | 45.0% | |
| AAGGTTGTTCTCTATGGCGA+CGG | - | chr5_2:17357195-17357214 | Msa0760760:intron | 45.0% | |
| ATATGAGGTGCGCATGTTTG+TGG | - | chr5_2:17357331-17357350 | Msa0760760:intron | 45.0% | |
| ! | TGAGTGAGGATGTTTTCTGG+TGG | + | chr5_2:17357449-17357468 | None:intergenic | 45.0% |
| ! | CAACTAGCTCTCTTTGAGTG+AGG | + | chr5_2:17357463-17357482 | None:intergenic | 45.0% |
| ! | GGCATCAAAGCTTTATCCAG+AGG | - | chr5_2:17357811-17357830 | Msa0760760:CDS | 45.0% |
| !!! | TTATTTTACTAAAAATATTA+AGG | + | chr5_2:17356638-17356657 | None:intergenic | 5.0% |
| !! | AATAATAAAAAATATACATT+GGG | - | chr5_2:17357945-17357964 | Msa0760760:five_prime_UTR | 5.0% |
| ! | GAGCAAGGTTCTAGTTGTGG+GGG | - | chr5_2:17355562-17355581 | Msa0760760:exon | 50.0% |
| ! | AGCAAGGTTCTAGTTGTGGG+GGG | - | chr5_2:17355563-17355582 | Msa0760760:exon | 50.0% |
| !! | TTCTAGTTGTGGGGGGTACT+GGG | - | chr5_2:17355570-17355589 | Msa0760760:exon | 50.0% |
| !! | GGGGTACTGGGTATATTGGT+AGG | - | chr5_2:17355582-17355601 | Msa0760760:CDS | 50.0% |
| CTAGGTGCTCATCTTGTGGA+AGG | - | chr5_2:17355713-17355732 | Msa0760760:CDS | 50.0% | |
| GTTGAAGCCATCAAGGATGC+AGG | - | chr5_2:17355851-17355870 | Msa0760760:intron | 50.0% | |
| GCTTGAGCTAGCTAGGTACT+AGG | + | chr5_2:17356407-17356426 | None:intergenic | 50.0% | |
| GGTAGGAAACGCTAGTGGAA+AGG | + | chr5_2:17356979-17356998 | None:intergenic | 50.0% | |
| CTGAAGGTAGGAAACGCTAG+TGG | + | chr5_2:17356984-17357003 | None:intergenic | 50.0% | |
| ATGGGACATGCACTTGAACC+AGG | - | chr5_2:17357027-17357046 | Msa0760760:intron | 50.0% | |
| ! | CATCTCCGCCAACTGTTTTG+CGG | - | chr5_2:17357119-17357138 | Msa0760760:intron | 50.0% |
| ! | TGTTTTGCGGCCTACTTTGC+CGG | - | chr5_2:17357132-17357151 | Msa0760760:intron | 50.0% |
| AGAGAGGTTACCGGCAAAGT+AGG | + | chr5_2:17357145-17357164 | None:intergenic | 50.0% | |
| TGCCGGTAACCTCTCTCAAA+TGG | - | chr5_2:17357149-17357168 | Msa0760760:intron | 50.0% | |
| GCCGGTAACCTCTCTCAAAT+GGG | - | chr5_2:17357150-17357169 | Msa0760760:intron | 50.0% | |
| ACTCTTTCCTCCACGAGACA+AGG | - | chr5_2:17357176-17357195 | Msa0760760:intron | 50.0% | |
| AGAACAACCTTGTCTCGTGG+AGG | + | chr5_2:17357186-17357205 | None:intergenic | 50.0% | |
| TATGGCGACGGCAATGTCAA+AGG | - | chr5_2:17357207-17357226 | Msa0760760:intron | 50.0% | |
| TGTGCCCTAGCTCACATGAT+TGG | + | chr5_2:17357275-17357294 | None:intergenic | 50.0% | |
| TTGGACCTTGCAAGCCAAGT+AGG | - | chr5_2:17357719-17357738 | Msa0760760:CDS | 50.0% | |
| CTTGCAAGCCAAGTAGGAGT+GGG | - | chr5_2:17357725-17357744 | Msa0760760:CDS | 50.0% | |
| TTGCAAGCCAAGTAGGAGTG+GGG | - | chr5_2:17357726-17357745 | Msa0760760:CDS | 50.0% | |
| AGAAATGCCCCACTCCTACT+TGG | + | chr5_2:17357736-17357755 | None:intergenic | 50.0% | |
| ATGCGTGTGTATTGCACCTC+TGG | + | chr5_2:17357830-17357849 | None:intergenic | 50.0% | |
| ! | AGAGGTGCAATACACACGCA+TGG | - | chr5_2:17357829-17357848 | Msa0760760:CDS | 50.0% |
| ! | GTTCTAGTTGTGGGGGGTAC+TGG | - | chr5_2:17355569-17355588 | Msa0760760:exon | 55.0% |
| !! | GTGGGGGGTACTGGGTATAT+TGG | - | chr5_2:17355578-17355597 | Msa0760760:exon | 55.0% |
| GACGTTCCCTGCATCCTTGA+TGG | + | chr5_2:17355861-17355880 | None:intergenic | 55.0% | |
| CAAGGATGCAGGGAACGTCA+AGG | - | chr5_2:17355862-17355881 | Msa0760760:intron | 55.0% | |
| ACTTGCGGCTTGAGCTAGCT+AGG | + | chr5_2:17356414-17356433 | None:intergenic | 55.0% | |
| TGGAATGGACCCAGCTCTCA+TGG | - | chr5_2:17357008-17357027 | Msa0760760:intron | 55.0% | |
| GGAATGGACCCAGCTCTCAT+GGG | - | chr5_2:17357009-17357028 | Msa0760760:intron | 55.0% | |
| GTGCATGTCCCATGAGAGCT+GGG | + | chr5_2:17357020-17357039 | None:intergenic | 55.0% | |
| AGTGCATGTCCCATGAGAGC+TGG | + | chr5_2:17357021-17357040 | None:intergenic | 55.0% | |
| GTAGGCCGCAAAACAGTTGG+CGG | + | chr5_2:17357127-17357146 | None:intergenic | 55.0% | |
| !! | CCACTCCTACTTGGCTTGCA+AGG | + | chr5_2:17357727-17357746 | None:intergenic | 55.0% |
| CCTTGCAAGCCAAGTAGGAG+TGG | - | chr5_2:17357724-17357743 | Msa0760760:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 17355401 | 17358056 | 17355401 | ID=Msa0760760;Name=Msa0760760 |
| chr5_2 | mRNA | 17355401 | 17358056 | 17355401 | ID=Msa0760760-mRNA-1;Parent=Msa0760760;Name=Msa0760760-mRNA-1;_AED=0.06;_eAED=0.06;_QI=153|1|1|1|1|1|4|179|311 |
| chr5_2 | exon | 17355401 | 17355740 | 17355401 | ID=Msa0760760-mRNA-1:exon:7702;Parent=Msa0760760-mRNA-1 |
| chr5_2 | exon | 17355897 | 17356100 | 17355897 | ID=Msa0760760-mRNA-1:exon:7701;Parent=Msa0760760-mRNA-1 |
| chr5_2 | exon | 17356229 | 17356469 | 17356229 | ID=Msa0760760-mRNA-1:exon:7700;Parent=Msa0760760-mRNA-1 |
| chr5_2 | exon | 17357574 | 17358056 | 17357574 | ID=Msa0760760-mRNA-1:exon:7699;Parent=Msa0760760-mRNA-1 |
| chr5_2 | five_prime_UTR | 17357904 | 17358056 | 17357904 | ID=Msa0760760-mRNA-1:five_prime_utr;Parent=Msa0760760-mRNA-1 |
| chr5_2 | CDS | 17357574 | 17357903 | 17357574 | ID=Msa0760760-mRNA-1:cds;Parent=Msa0760760-mRNA-1 |
| chr5_2 | CDS | 17356229 | 17356469 | 17356229 | ID=Msa0760760-mRNA-1:cds;Parent=Msa0760760-mRNA-1 |
| chr5_2 | CDS | 17355897 | 17356100 | 17355897 | ID=Msa0760760-mRNA-1:cds;Parent=Msa0760760-mRNA-1 |
| chr5_2 | CDS | 17355580 | 17355740 | 17355580 | ID=Msa0760760-mRNA-1:cds;Parent=Msa0760760-mRNA-1 |
| chr5_2 | three_prime_UTR | 17355401 | 17355579 | 17355401 | ID=Msa0760760-mRNA-1:three_prime_utr;Parent=Msa0760760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
