Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802290 | XP_003612639.1 | 98.071 | 311 | 6 | 0 | 1 | 311 | 1 | 311 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802290 | sp|P52581|IFRH_LUPAL | 85.852 | 311 | 43 | 1 | 1 | 310 | 1 | 311 | 0.0 | 568 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802290 | B7FJQ2 | 98.071 | 311 | 6 | 0 | 1 | 311 | 1 | 311 | 0.0 | 638 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016670 | Msa0802290 | 0.808629 | 2.819651e-50 | -8.615850e-47 |
| Msa0103000 | Msa0802290 | 0.802626 | 5.130487e-49 | -8.615850e-47 |
| Msa0719210 | Msa0802290 | 0.821610 | 3.685535e-53 | -8.615850e-47 |
| Msa0760760 | Msa0802290 | 0.812223 | 4.722831e-51 | -8.615850e-47 |
| Msa0802290 | Msa0856050 | 0.802326 | 5.914973e-49 | -8.615850e-47 |
| Msa0802290 | Msa1016490 | 0.801979 | 6.972484e-49 | -8.615850e-47 |
| Msa0802290 | Msa1066490 | 0.813155 | 2.954025e-51 | -8.615850e-47 |
| Msa0124340 | Msa0802290 | 0.807062 | 6.073542e-50 | -8.615850e-47 |
| Msa0573380 | Msa0802290 | 0.824372 | 8.364605e-54 | -8.615850e-47 |
| Msa0574890 | Msa0802290 | 0.811511 | 6.751502e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802290 | MtrunA17_Chr5g0409641 | 98.071 | 311 | 6 | 0 | 1 | 311 | 1 | 311 | 0.0 | 638 |
| Msa0802290 | MtrunA17_Chr5g0409651 | 93.891 | 311 | 19 | 0 | 1 | 311 | 1 | 311 | 0.0 | 611 |
| Msa0802290 | MtrunA17_Chr8g0369391 | 76.527 | 311 | 72 | 1 | 1 | 310 | 1 | 311 | 1.67e-180 | 500 |
| Msa0802290 | MtrunA17_Chr3g0141691 | 47.557 | 307 | 153 | 3 | 3 | 307 | 4 | 304 | 7.63e-95 | 283 |
| Msa0802290 | MtrunA17_Chr5g0404471 | 47.742 | 310 | 154 | 3 | 3 | 310 | 5 | 308 | 3.24e-94 | 281 |
| Msa0802290 | MtrunA17_Chr3g0141681 | 47.249 | 309 | 153 | 4 | 3 | 307 | 4 | 306 | 7.05e-93 | 278 |
| Msa0802290 | MtrunA17_Chr3g0144701 | 47.249 | 309 | 155 | 4 | 4 | 310 | 9 | 311 | 9.11e-91 | 273 |
| Msa0802290 | MtrunA17_Chr4g0035131 | 42.997 | 307 | 167 | 3 | 4 | 308 | 45 | 345 | 2.54e-79 | 245 |
| Msa0802290 | MtrunA17_Chr5g0404481 | 41.433 | 321 | 168 | 5 | 3 | 310 | 4 | 317 | 1.46e-78 | 242 |
| Msa0802290 | MtrunA17_Chr5g0404511 | 41.433 | 321 | 168 | 5 | 3 | 310 | 4 | 317 | 2.09e-78 | 241 |
| Msa0802290 | MtrunA17_Chr4g0035121 | 41.290 | 310 | 174 | 3 | 1 | 307 | 1 | 305 | 8.79e-76 | 234 |
| Msa0802290 | MtrunA17_Chr3g0078901 | 42.308 | 312 | 160 | 8 | 2 | 307 | 4 | 301 | 9.33e-76 | 234 |
| Msa0802290 | MtrunA17_Chr4g0035111 | 39.806 | 309 | 178 | 3 | 2 | 308 | 5 | 307 | 6.41e-75 | 233 |
| Msa0802290 | MtrunA17_Chr3g0078831 | 41.290 | 310 | 166 | 7 | 2 | 307 | 4 | 301 | 1.29e-70 | 221 |
| Msa0802290 | MtrunA17_Chr1g0198771 | 33.651 | 315 | 196 | 6 | 1 | 310 | 11 | 317 | 6.19e-57 | 187 |
| Msa0802290 | MtrunA17_Chr3g0078941 | 37.438 | 203 | 117 | 5 | 108 | 307 | 12 | 207 | 3.07e-38 | 135 |
| Msa0802290 | MtrunA17_Chr3g0078951 | 42.202 | 109 | 54 | 3 | 3 | 110 | 5 | 105 | 3.59e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802290 | AT1G32100.1 | 70.455 | 308 | 91 | 0 | 3 | 310 | 9 | 316 | 1.82e-172 | 480 |
| Msa0802290 | AT4G13660.1 | 69.156 | 308 | 95 | 0 | 3 | 310 | 9 | 316 | 2.95e-165 | 462 |
| Msa0802290 | AT4G13660.2 | 69.156 | 308 | 95 | 0 | 3 | 310 | 9 | 316 | 2.95e-165 | 462 |
| Msa0802290 | AT1G75290.1 | 45.687 | 313 | 160 | 4 | 3 | 311 | 5 | 311 | 5.61e-90 | 271 |
| Msa0802290 | AT1G75290.2 | 45.687 | 313 | 160 | 4 | 3 | 311 | 32 | 338 | 1.80e-89 | 271 |
| Msa0802290 | AT1G75280.1 | 45.833 | 312 | 160 | 4 | 3 | 311 | 5 | 310 | 1.03e-88 | 268 |
| Msa0802290 | AT4G39230.1 | 44.695 | 311 | 162 | 4 | 3 | 310 | 4 | 307 | 5.11e-84 | 256 |
| Msa0802290 | AT1G75300.1 | 44.037 | 327 | 154 | 7 | 3 | 310 | 5 | 321 | 1.99e-83 | 254 |
| Msa0802290 | AT1G19540.1 | 42.765 | 311 | 170 | 4 | 4 | 310 | 3 | 309 | 1.93e-77 | 239 |
| Msa0802290 | AT1G19540.2 | 44.574 | 258 | 137 | 3 | 4 | 259 | 3 | 256 | 5.09e-69 | 216 |
| Msa0802290 | AT4G34540.1 | 39.423 | 312 | 166 | 5 | 3 | 307 | 7 | 302 | 1.01e-66 | 211 |
Find 72 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTTCCTACCTTCAGAATT+TGG | 0.123553 | 5_3:-16495429 | Msa0802290:CDS |
| AGTTTAATTTATGCTCAATA+TGG | 0.251134 | 5_3:+16496912 | None:intergenic |
| GACGTTCCCTGCATCCTTGA+TGG | 0.252714 | 5_3:+16496559 | None:intergenic |
| GAGAAATGGGAGAAACTTAT+TGG | 0.253360 | 5_3:-16494935 | Msa0802290:CDS |
| TCATCAAATGTGACTCTTCC+TGG | 0.258900 | 5_3:+16495372 | None:intergenic |
| GTACTTCAACGTCCAGATAT+AGG | 0.328641 | 5_3:-16496770 | Msa0802290:CDS |
| TCAGTTTCAAGCCCTATATC+TGG | 0.341670 | 5_3:+16496758 | None:intergenic |
| AAGAAAGTCTTGTTCGGATA+TGG | 0.342755 | 5_3:+16494892 | None:intergenic |
| AAAGAGAGCTAGTTGAGAAA+TGG | 0.344521 | 5_3:-16494949 | Msa0802290:CDS |
| TACTTCAACGTCCAGATATA+GGG | 0.350833 | 5_3:-16496769 | Msa0802290:CDS |
| TTGATGAGAAAATGACTATA+AGG | 0.356440 | 5_3:-16495356 | Msa0802290:CDS |
| AAGAGAGCTAGTTGAGAAAT+GGG | 0.369973 | 5_3:-16494948 | Msa0802290:CDS |
| CGAGACAAGGTTGTTCTCTA+TGG | 0.382332 | 5_3:-16495228 | Msa0802290:CDS |
| GTTGTTATTTGCACCATGTC+TGG | 0.405325 | 5_3:-16496632 | Msa0802290:CDS |
| TGCCGGTAACCTCTCTCAAA+TGG | 0.408456 | 5_3:-16495268 | Msa0802290:CDS |
| TGAACAAGACAATATATCTA+AGG | 0.409071 | 5_3:-16494994 | Msa0802290:CDS |
| TTGAGCATAAATTAAACTAT+AGG | 0.412531 | 5_3:-16496907 | Msa0802290:five_prime_UTR |
| CTTCTTTCATTCAAGAAACT+AGG | 0.431002 | 5_3:-16496722 | Msa0802290:CDS |
| TGGAATGGACCCAGCTCTCA+TGG | 0.461798 | 5_3:-16495409 | Msa0802290:CDS |
| AGAAATGCCCCACTCCTACT+TGG | 0.468869 | 5_3:+16494684 | None:intergenic |
| TCCCATTTGAGAGAGGTTAC+CGG | 0.471634 | 5_3:+16495266 | None:intergenic |
| ATGCGTGTGTATTGCACCTC+TGG | 0.472227 | 5_3:+16494590 | None:intergenic |
| CCACTCCTACTTGGCTTGCA+AGG | 0.479291 | 5_3:+16494693 | None:intergenic |
| GCCGGTAACCTCTCTCAAAT+GGG | 0.483634 | 5_3:-16495267 | Msa0802290:CDS |
| AGTGCATGTCCCATGAGAGC+TGG | 0.487799 | 5_3:+16495399 | None:intergenic |
| AAAAGTAAGGTTCTAGTTGT+GGG | 0.495588 | 5_3:-16496857 | Msa0802290:CDS |
| ATTGTCTTGTTCAATGTTCG+AGG | 0.498830 | 5_3:+16495004 | None:intergenic |
| GTTGAGGCCATCAAGGATGC+AGG | 0.499395 | 5_3:-16496566 | Msa0802290:CDS |
| AGAGAGGTTACCGGCAAAGT+AGG | 0.504148 | 5_3:+16495275 | None:intergenic |
| GGAAGAAAGAAAGTCTTGTT+CGG | 0.504559 | 5_3:+16494886 | None:intergenic |
| CAAACTTGTTGAGGCCATCA+AGG | 0.505187 | 5_3:-16496573 | Msa0802290:CDS |
| GACTTTCTTTCTTCCATGAA+AGG | 0.513933 | 5_3:-16494878 | Msa0802290:intron |
| CCTACCTTCAGAATTTGGAA+TGG | 0.527632 | 5_3:-16495424 | Msa0802290:CDS |
| GTGCATGTCCCATGAGAGCT+GGG | 0.542186 | 5_3:+16495400 | None:intergenic |
| TTGTCTTGTTCAATGTTCGA+GGG | 0.543328 | 5_3:+16495005 | None:intergenic |
| GACTATAAGGAAAACAATTG+AGG | 0.545612 | 5_3:-16495343 | Msa0802290:CDS |
| GATGTAAGTGAAAGGAATGT+TGG | 0.548414 | 5_3:+16495317 | None:intergenic |
| AAAGTAGGCCGCAAAACAGT+TGG | 0.553595 | 5_3:+16495290 | None:intergenic |
| GAAACTAGGTGCTCATCTTG+TGG | 0.554098 | 5_3:-16496708 | Msa0802290:CDS |
| TTGGACCTTGCAAGCCAAGT+AGG | 0.556786 | 5_3:-16494698 | Msa0802290:CDS |
| TGAAATAGGTGATGGTGAAG+AGG | 0.562830 | 5_3:-16494627 | Msa0802290:CDS |
| ACTCTTTCCTCCACGAGACA+AGG | 0.562903 | 5_3:-16495241 | Msa0802290:CDS |
| ATGGGACATGCACTTGAACC+AGG | 0.569918 | 5_3:-16495390 | Msa0802290:CDS |
| GGATATCATGTGTCAAGCTA+AGG | 0.570190 | 5_3:+16496933 | None:intergenic |
| TATGGCGACGGCAATGTCAA+AGG | 0.572714 | 5_3:-16495210 | Msa0802290:intron |
| CCTTGCAAGCCAAGTAGGAG+TGG | 0.574853 | 5_3:-16494693 | Msa0802290:CDS |
| AAGTAAGGTTCTAGTTGTGG+GGG | 0.587023 | 5_3:-16496855 | Msa0802290:CDS |
| CTTGCAAGCCAAGTAGGAGT+GGG | 0.587692 | 5_3:-16494692 | Msa0802290:CDS |
| GGAATGGACCCAGCTCTCAT+GGG | 0.590644 | 5_3:-16495408 | Msa0802290:CDS |
| ATCTGGACGTTGAAGTACAT+AGG | 0.593407 | 5_3:+16496775 | None:intergenic |
| GTAGGCCGCAAAACAGTTGG+CGG | 0.595977 | 5_3:+16495293 | None:intergenic |
| CAACTAGCTCTCTTTGAGTG+AGG | 0.596234 | 5_3:+16494957 | None:intergenic |
| CTAGGTGCTCATCTTGTGGA+AGG | 0.605859 | 5_3:-16496704 | Msa0802290:CDS |
| GGGTCCATTCCAAATTCTGA+AGG | 0.606637 | 5_3:+16495420 | None:intergenic |
| CCATTCCAAATTCTGAAGGT+AGG | 0.607236 | 5_3:+16495424 | None:intergenic |
| TAGAGAACAACCTTGTCTCG+TGG | 0.612182 | 5_3:+16495231 | None:intergenic |
| TCGAAAATGAACTCCAGACA+TGG | 0.615339 | 5_3:+16496619 | None:intergenic |
| AAGGTTGTTCTCTATGGCGA+CGG | 0.618470 | 5_3:-16495222 | Msa0802290:CDS |
| GGCATCAAAGCTTTATCCAG+AGG | 0.622118 | 5_3:-16494606 | Msa0802290:CDS |
| AGAGTGTTCCCATTTGAGAG+AGG | 0.622439 | 5_3:+16495259 | None:intergenic |
| AGAGGTGCAATACACACGCA+TGG | 0.626180 | 5_3:-16494588 | Msa0802290:CDS |
| TTGAGGCCATCAAGGATGCA+GGG | 0.628765 | 5_3:-16496565 | Msa0802290:CDS |
| TTGGCGGAGATGTAAGTGAA+AGG | 0.629490 | 5_3:+16495309 | None:intergenic |
| TATAGGGCTTGAAACTGAGA+AGG | 0.631649 | 5_3:-16496753 | Msa0802290:CDS |
| TATTGGTAGAAGAATAGTGA+AGG | 0.633581 | 5_3:-16496822 | Msa0802290:CDS |
| AAAGTAAGGTTCTAGTTGTG+GGG | 0.635275 | 5_3:-16496856 | Msa0802290:CDS |
| GTGAAGGCAAGTTTAGAACA+AGG | 0.641128 | 5_3:-16496806 | Msa0802290:CDS |
| CAAGGATGCAGGGAACGTCA+AGG | 0.642191 | 5_3:-16496555 | Msa0802290:intron |
| GTTGCAACTCAAACTTGTTG+AGG | 0.664687 | 5_3:-16496582 | Msa0802290:CDS |
| TTGCAAGCCAAGTAGGAGTG+GGG | 0.683571 | 5_3:-16494691 | Msa0802290:CDS |
| AGAACAACCTTGTCTCGTGG+AGG | 0.687370 | 5_3:+16495234 | None:intergenic |
| AGTAAGGTTCTAGTTGTGGG+GGG | 0.705473 | 5_3:-16496854 | Msa0802290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATAAAAAAAAAAAAAA+AGG | - | chr5_3:16495646-16495665 | Msa0802290:intron | 0.0% |
| !! | TTTCTATACATATTATTATA+TGG | - | chr5_3:16495042-16495061 | Msa0802290:CDS | 10.0% |
| !! | TATGTATATATAATTAAGAT+AGG | + | chr5_3:16495151-16495170 | None:intergenic | 10.0% |
| !!! | TTGCTAATTTTTTTTTTTTT+TGG | + | chr5_3:16495507-16495526 | None:intergenic | 10.0% |
| !!! | TTTATTAAAATTTCTAGAAA+TGG | - | chr5_3:16495677-16495696 | Msa0802290:intron | 10.0% |
| !! | GAATAATAAAAAATATACAT+TGG | - | chr5_3:16496921-16496940 | Msa0802290:five_prime_UTR | 10.0% |
| !! | ATAATAAAAAATATACATTG+GGG | - | chr5_3:16496923-16496942 | Msa0802290:five_prime_UTR | 10.0% |
| !!! | AATAAATACCTCTAAAAAAA+TGG | - | chr5_3:16495576-16495595 | Msa0802290:intron | 15.0% |
| !!! | TTTTTATACCATTTTTTTAG+AGG | + | chr5_3:16495587-16495606 | None:intergenic | 15.0% |
| !! | TAAAATACCTCAAAAAAAAA+GGG | + | chr5_3:16495721-16495740 | None:intergenic | 15.0% |
| !! | AAAATCTATAATTTCATATG+TGG | + | chr5_3:16495761-16495780 | None:intergenic | 15.0% |
| !!! | ATGTTTTATATTTACTATAG+TGG | - | chr5_3:16495896-16495915 | Msa0802290:intron | 15.0% |
| !!! | ATAATTTTATTTTGGGTAAA+GGG | + | chr5_3:16496551-16496570 | None:intergenic | 15.0% |
| !!! | AAATTTGTACTTTTTTTAAG+AGG | - | chr5_3:16496874-16496893 | Msa0802290:exon | 15.0% |
| !!! | GTTTAATGAAATCATTTTTT+GGG | + | chr5_3:16496990-16497009 | None:intergenic | 15.0% |
| !!! | TGTTTAATGAAATCATTTTT+TGG | + | chr5_3:16496991-16497010 | None:intergenic | 15.0% |
| !!! | TTTTGCCTCAAAAAAATAAA+AGG | + | chr5_3:16494410-16494429 | None:intergenic | 20.0% |
| !!! | AGTTTAATTTATGCTCAATA+TGG | + | chr5_3:16494485-16494504 | None:intergenic | 20.0% |
| !! | TTGAGCATAAATTAAACTAT+AGG | - | chr5_3:16494487-16494506 | Msa0802290:three_prime_UTR | 20.0% |
| !! | ACAAGAAAGAAAAACAATAA+TGG | - | chr5_3:16494512-16494531 | Msa0802290:three_prime_UTR | 20.0% |
| !! | CAAGAAAGAAAAACAATAAT+GGG | - | chr5_3:16494513-16494532 | Msa0802290:three_prime_UTR | 20.0% |
| !!! | TTTTTCTAATCATCAAAGTT+TGG | - | chr5_3:16494716-16494735 | Msa0802290:intron | 20.0% |
| !!! | CATTTTTCTTAGACAAATAT+CGG | - | chr5_3:16494875-16494894 | Msa0802290:intron | 20.0% |
| !!! | TAAAGGTTTGAAAAAGTTTT+AGG | + | chr5_3:16494957-16494976 | None:intergenic | 20.0% |
| !!! | TATCAGTACTTTTAAACTAA+AGG | + | chr5_3:16494974-16494993 | None:intergenic | 20.0% |
| !! | AATTAGCAAATAATTGATCA+AGG | - | chr5_3:16495518-16495537 | Msa0802290:intron | 20.0% |
| !!! | TTTAGAGGTATTTATTAGAA+TGG | + | chr5_3:16495572-16495591 | None:intergenic | 20.0% |
| !!! | TAAAATTTCTAGAAATGGTA+AGG | - | chr5_3:16495682-16495701 | Msa0802290:intron | 20.0% |
| !!! | AAAATTTCTAGAAATGGTAA+GGG | - | chr5_3:16495683-16495702 | Msa0802290:intron | 20.0% |
| !! | CTAAAATACCTCAAAAAAAA+AGG | + | chr5_3:16495722-16495741 | None:intergenic | 20.0% |
| !!! | AAAAAAACTTATTTCTCTCA+TGG | - | chr5_3:16495834-16495853 | Msa0802290:intron | 20.0% |
| !!! | AAAAAACTTATTTCTCTCAT+GGG | - | chr5_3:16495835-16495854 | Msa0802290:intron | 20.0% |
| !!! | AATGTTAACTATCTTTTCTA+AGG | + | chr5_3:16496219-16496238 | None:intergenic | 20.0% |
| !! | ACAATAAGATATATGATATG+AGG | - | chr5_3:16496293-16496312 | Msa0802290:intron | 20.0% |
| !!! | CATAATTTTATTTTGGGTAA+AGG | + | chr5_3:16496552-16496571 | None:intergenic | 20.0% |
| !!! | GGTGTACATAATTTTATTTT+GGG | + | chr5_3:16496558-16496577 | None:intergenic | 20.0% |
| !!! | TGGTGTACATAATTTTATTT+TGG | + | chr5_3:16496559-16496578 | None:intergenic | 20.0% |
| !!! | ATTTTAGCTATTTCTTTTCT+TGG | + | chr5_3:16496579-16496598 | None:intergenic | 20.0% |
| !!! | TTCTATCATATTTTCTATGA+AGG | - | chr5_3:16496729-16496748 | Msa0802290:CDS | 20.0% |
| !!! | TCTATCATATTTTCTATGAA+GGG | - | chr5_3:16496730-16496749 | Msa0802290:CDS | 20.0% |
| !!! | CACATCCTTTTATTTTTTTG+AGG | - | chr5_3:16494402-16494421 | Msa0802290:three_prime_UTR | 25.0% |
| !! | AACAATAATGGGAAAAAGTA+AGG | - | chr5_3:16494524-16494543 | Msa0802290:three_prime_UTR | 25.0% |
| !!! | GAAAAAGTTTTAGGAACTAA+AGG | + | chr5_3:16494948-16494967 | None:intergenic | 25.0% |
| ! | TCAACATATTCAACACTATT+TGG | + | chr5_3:16495205-16495224 | None:intergenic | 25.0% |
| ! | TGATTCAATCATTTCATCAA+GGG | + | chr5_3:16495362-16495381 | None:intergenic | 25.0% |
| ! | TTGATTCAATCATTTCATCA+AGG | + | chr5_3:16495363-16495382 | None:intergenic | 25.0% |
| !! | AGTTCAAGTATTGTATTGAA+TGG | - | chr5_3:16495410-16495429 | Msa0802290:CDS | 25.0% |
| !! | GTTCAAGTATTGTATTGAAT+GGG | - | chr5_3:16495411-16495430 | Msa0802290:CDS | 25.0% |
| ! | ATAATTTCATATGTGGTCAA+AGG | + | chr5_3:16495754-16495773 | None:intergenic | 25.0% |
| !! | AATTTTATCGAAAGCTATAG+TGG | - | chr5_3:16495870-16495889 | Msa0802290:intron | 25.0% |
| ! | TTGATGAGAAAATGACTATA+AGG | - | chr5_3:16496038-16496057 | Msa0802290:intron | 25.0% |
| ! | TGAACAAGACAATATATCTA+AGG | - | chr5_3:16496400-16496419 | Msa0802290:intron | 25.0% |
| !!! | AATATTTATTGACTCTTGAC+TGG | - | chr5_3:16496659-16496678 | Msa0802290:CDS | 25.0% |
| !!! | TGTTTGGCAAATTTTGAAAT+AGG | - | chr5_3:16496753-16496772 | Msa0802290:CDS | 25.0% |
| ! | AAAAAGTAAGGTTCTAGTTG+TGG | - | chr5_3:16494536-16494555 | Msa0802290:three_prime_UTR | 30.0% |
| ! | AAAAGTAAGGTTCTAGTTGT+GGG | - | chr5_3:16494537-16494556 | Msa0802290:three_prime_UTR | 30.0% |
| TATTGGTAGAAGAATAGTGA+AGG | - | chr5_3:16494572-16494591 | Msa0802290:CDS | 30.0% | |
| CTTCTTTCATTCAAGAAACT+AGG | - | chr5_3:16494672-16494691 | Msa0802290:CDS | 30.0% | |
| CAATACAATACTTGAACTTG+CGG | + | chr5_3:16495408-16495427 | None:intergenic | 30.0% | |
| GACTATAAGGAAAACAATTG+AGG | - | chr5_3:16496051-16496070 | Msa0802290:intron | 30.0% | |
| !!! | TATTTTCTATGAAGGGTGTT+TGG | - | chr5_3:16496737-16496756 | Msa0802290:CDS | 30.0% |
| !!! | GCAAATTTTGAAATAGGTGA+TGG | - | chr5_3:16496759-16496778 | Msa0802290:CDS | 30.0% |
| ! | AAAGTAAGGTTCTAGTTGTG+GGG | - | chr5_3:16494538-16494557 | Msa0802290:three_prime_UTR | 35.0% |
| TACTTCAACGTCCAGATATA+GGG | - | chr5_3:16494625-16494644 | Msa0802290:CDS | 35.0% | |
| ! | GATAGGTTGAAGATCTCAAT+TGG | + | chr5_3:16495134-16495153 | None:intergenic | 35.0% |
| !! | GCTAATGGTAATTTGTTGTG+TGG | + | chr5_3:16495336-16495355 | None:intergenic | 35.0% |
| ATCAAGGTAAAGAACATGTG+TGG | - | chr5_3:16495534-16495553 | Msa0802290:intron | 35.0% | |
| TCAAGGTAAAGAACATGTGT+GGG | - | chr5_3:16495535-16495554 | Msa0802290:intron | 35.0% | |
| AACATGTGTGGGTGTTTATT+GGG | - | chr5_3:16495546-16495565 | Msa0802290:intron | 35.0% | |
| TAGAAATGGTAAGGGTTCAA+AGG | - | chr5_3:16495691-16495710 | Msa0802290:intron | 35.0% | |
| TTTCATATGTGGTCAAAGGT+TGG | + | chr5_3:16495750-16495769 | None:intergenic | 35.0% | |
| GATGTAAGTGAAAGGAATGT+TGG | + | chr5_3:16496080-16496099 | None:intergenic | 35.0% | |
| !!! | GTTTGTGGCAGTTGTTTTTA+TGG | - | chr5_3:16496323-16496342 | Msa0802290:intron | 35.0% |
| ! | TTGTCTTGTTCAATGTTCGA+GGG | + | chr5_3:16496392-16496411 | None:intergenic | 35.0% |
| ! | ATTGTCTTGTTCAATGTTCG+AGG | + | chr5_3:16496393-16496412 | None:intergenic | 35.0% |
| AAAGAGAGCTAGTTGAGAAA+TGG | - | chr5_3:16496445-16496464 | Msa0802290:intron | 35.0% | |
| AAGAGAGCTAGTTGAGAAAT+GGG | - | chr5_3:16496446-16496465 | Msa0802290:intron | 35.0% | |
| GAGAAATGGGAGAAACTTAT+TGG | - | chr5_3:16496459-16496478 | Msa0802290:intron | 35.0% | |
| !! | AAGAAAGTCTTGTTCGGATA+TGG | + | chr5_3:16496505-16496524 | None:intergenic | 35.0% |
| !! | GGAAGAAAGAAAGTCTTGTT+CGG | + | chr5_3:16496511-16496530 | None:intergenic | 35.0% |
| GACTTTCTTTCTTCCATGAA+AGG | - | chr5_3:16496516-16496535 | Msa0802290:intron | 35.0% | |
| TCTTGACTGGTGTGAAATTT+AGG | - | chr5_3:16496672-16496691 | Msa0802290:CDS | 35.0% | |
| ! | ACTGGTGTGAAATTTAGGTT+TGG | - | chr5_3:16496677-16496696 | Msa0802290:CDS | 35.0% |
| GGATATCATGTGTCAAGCTA+AGG | + | chr5_3:16494464-16494483 | None:intergenic | 40.0% | |
| ! | AAGTAAGGTTCTAGTTGTGG+GGG | - | chr5_3:16494539-16494558 | Msa0802290:three_prime_UTR | 40.0% |
| ! | GTGAAGGCAAGTTTAGAACA+AGG | - | chr5_3:16494588-16494607 | Msa0802290:CDS | 40.0% |
| ATCTGGACGTTGAAGTACAT+AGG | + | chr5_3:16494622-16494641 | None:intergenic | 40.0% | |
| GTACTTCAACGTCCAGATAT+AGG | - | chr5_3:16494624-16494643 | Msa0802290:CDS | 40.0% | |
| TCAGTTTCAAGCCCTATATC+TGG | + | chr5_3:16494639-16494658 | None:intergenic | 40.0% | |
| TATAGGGCTTGAAACTGAGA+AGG | - | chr5_3:16494641-16494660 | Msa0802290:CDS | 40.0% | |
| !! | GTTGTTATTTGCACCATGTC+TGG | - | chr5_3:16494762-16494781 | Msa0802290:intron | 40.0% |
| TCGAAAATGAACTCCAGACA+TGG | + | chr5_3:16494778-16494797 | None:intergenic | 40.0% | |
| !! | GTTGCAACTCAAACTTGTTG+AGG | - | chr5_3:16494812-16494831 | Msa0802290:intron | 40.0% |
| TTTCATCAAGGGACAGCTAA+TGG | + | chr5_3:16495351-16495370 | None:intergenic | 40.0% | |
| GAACATGTGTGGGTGTTTAT+TGG | - | chr5_3:16495545-16495564 | Msa0802290:intron | 40.0% | |
| AAATGGTAAGGGTTCAAAGG+TGG | - | chr5_3:16495694-16495713 | Msa0802290:intron | 40.0% | |
| !!! | AGGTGGACCCTTTTTTTTTG+AGG | - | chr5_3:16495711-16495730 | Msa0802290:intron | 40.0% |
| CGTTTCCTACCTTCAGAATT+TGG | - | chr5_3:16495965-16495984 | Msa0802290:intron | 40.0% | |
| ! | CCATTCCAAATTCTGAAGGT+AGG | + | chr5_3:16495973-16495992 | None:intergenic | 40.0% |
| CCTACCTTCAGAATTTGGAA+TGG | - | chr5_3:16495970-16495989 | Msa0802290:intron | 40.0% | |
| TCATCAAATGTGACTCTTCC+TGG | + | chr5_3:16496025-16496044 | None:intergenic | 40.0% | |
| ! | TTTTGCCAATCATGTGAGCT+AGG | - | chr5_3:16496244-16496263 | Msa0802290:intron | 40.0% |
| TTTGCCAATCATGTGAGCTA+GGG | - | chr5_3:16496245-16496264 | Msa0802290:intron | 40.0% | |
| ! | CTTTGAGTGAGGATGTTTTC+TGG | + | chr5_3:16496429-16496448 | None:intergenic | 40.0% |
| ! | AGGGTGTGTTTTACCTTTCA+TGG | + | chr5_3:16496532-16496551 | None:intergenic | 40.0% |
| ! | TGAAATAGGTGATGGTGAAG+AGG | - | chr5_3:16496767-16496786 | Msa0802290:CDS | 40.0% |
| ! | AGTAAGGTTCTAGTTGTGGG+GGG | - | chr5_3:16494540-16494559 | Msa0802290:three_prime_UTR | 45.0% |
| GAAACTAGGTGCTCATCTTG+TGG | - | chr5_3:16494686-16494705 | Msa0802290:CDS | 45.0% | |
| !! | CAAACTTGTTGAGGCCATCA+AGG | - | chr5_3:16494821-16494840 | Msa0802290:intron | 45.0% |
| CATATGTGGTCAAAGGTTGG+TGG | + | chr5_3:16495747-16495766 | None:intergenic | 45.0% | |
| GGGTCCATTCCAAATTCTGA+AGG | + | chr5_3:16495977-16495996 | None:intergenic | 45.0% | |
| TTGGCGGAGATGTAAGTGAA+AGG | + | chr5_3:16496088-16496107 | None:intergenic | 45.0% | |
| AAAGTAGGCCGCAAAACAGT+TGG | + | chr5_3:16496107-16496126 | None:intergenic | 45.0% | |
| TCCCATTTGAGAGAGGTTAC+CGG | + | chr5_3:16496131-16496150 | None:intergenic | 45.0% | |
| ! | AGAGTGTTCCCATTTGAGAG+AGG | + | chr5_3:16496138-16496157 | None:intergenic | 45.0% |
| TAGAGAACAACCTTGTCTCG+TGG | + | chr5_3:16496166-16496185 | None:intergenic | 45.0% | |
| CGAGACAAGGTTGTTCTCTA+TGG | - | chr5_3:16496166-16496185 | Msa0802290:intron | 45.0% | |
| AAGGTTGTTCTCTATGGCGA+CGG | - | chr5_3:16496172-16496191 | Msa0802290:intron | 45.0% | |
| ATATGAGGTGCGCATGTTTG+TGG | - | chr5_3:16496308-16496327 | Msa0802290:intron | 45.0% | |
| ! | TGAGTGAGGATGTTTTCTGG+TGG | + | chr5_3:16496426-16496445 | None:intergenic | 45.0% |
| ! | CAACTAGCTCTCTTTGAGTG+AGG | + | chr5_3:16496440-16496459 | None:intergenic | 45.0% |
| ! | GGCATCAAAGCTTTATCCAG+AGG | - | chr5_3:16496788-16496807 | Msa0802290:CDS | 45.0% |
| !!! | TTATTTTACTAAAAATATTA+AGG | + | chr5_3:16495615-16495634 | None:intergenic | 5.0% |
| !! | AATAATAAAAAATATACATT+GGG | - | chr5_3:16496922-16496941 | Msa0802290:five_prime_UTR | 5.0% |
| !! | TTCTAGTTGTGGGGGGTACT+GGG | - | chr5_3:16494547-16494566 | Msa0802290:exon | 50.0% |
| CTAGGTGCTCATCTTGTGGA+AGG | - | chr5_3:16494690-16494709 | Msa0802290:CDS | 50.0% | |
| TTGAGGCCATCAAGGATGCA+GGG | - | chr5_3:16494829-16494848 | Msa0802290:intron | 50.0% | |
| GCTTGAGCTAGCTAGGTACT+AGG | + | chr5_3:16495386-16495405 | None:intergenic | 50.0% | |
| GGTAGGAAACGCTAGTGGAA+AGG | + | chr5_3:16495956-16495975 | None:intergenic | 50.0% | |
| CTGAAGGTAGGAAACGCTAG+TGG | + | chr5_3:16495961-16495980 | None:intergenic | 50.0% | |
| ATGGGACATGCACTTGAACC+AGG | - | chr5_3:16496004-16496023 | Msa0802290:intron | 50.0% | |
| ! | CATCTCCGCCAACTGTTTTG+CGG | - | chr5_3:16496096-16496115 | Msa0802290:intron | 50.0% |
| ! | TGTTTTGCGGCCTACTTTGC+CGG | - | chr5_3:16496109-16496128 | Msa0802290:intron | 50.0% |
| AGAGAGGTTACCGGCAAAGT+AGG | + | chr5_3:16496122-16496141 | None:intergenic | 50.0% | |
| TGCCGGTAACCTCTCTCAAA+TGG | - | chr5_3:16496126-16496145 | Msa0802290:intron | 50.0% | |
| GCCGGTAACCTCTCTCAAAT+GGG | - | chr5_3:16496127-16496146 | Msa0802290:intron | 50.0% | |
| ACTCTTTCCTCCACGAGACA+AGG | - | chr5_3:16496153-16496172 | Msa0802290:intron | 50.0% | |
| AGAACAACCTTGTCTCGTGG+AGG | + | chr5_3:16496163-16496182 | None:intergenic | 50.0% | |
| TATGGCGACGGCAATGTCAA+AGG | - | chr5_3:16496184-16496203 | Msa0802290:intron | 50.0% | |
| TGTGCCCTAGCTCACATGAT+TGG | + | chr5_3:16496252-16496271 | None:intergenic | 50.0% | |
| TTGGACCTTGCAAGCCAAGT+AGG | - | chr5_3:16496696-16496715 | Msa0802290:CDS | 50.0% | |
| CTTGCAAGCCAAGTAGGAGT+GGG | - | chr5_3:16496702-16496721 | Msa0802290:CDS | 50.0% | |
| TTGCAAGCCAAGTAGGAGTG+GGG | - | chr5_3:16496703-16496722 | Msa0802290:CDS | 50.0% | |
| AGAAATGCCCCACTCCTACT+TGG | + | chr5_3:16496713-16496732 | None:intergenic | 50.0% | |
| ATGCGTGTGTATTGCACCTC+TGG | + | chr5_3:16496807-16496826 | None:intergenic | 50.0% | |
| ! | AGAGGTGCAATACACACGCA+TGG | - | chr5_3:16496806-16496825 | Msa0802290:CDS | 50.0% |
| ! | GTTCTAGTTGTGGGGGGTAC+TGG | - | chr5_3:16494546-16494565 | Msa0802290:exon | 55.0% |
| !! | GTGGGGGGTACTGGGTATAT+TGG | - | chr5_3:16494555-16494574 | Msa0802290:exon | 55.0% |
| GTTGAGGCCATCAAGGATGC+AGG | - | chr5_3:16494828-16494847 | Msa0802290:intron | 55.0% | |
| GACGTTCCCTGCATCCTTGA+TGG | + | chr5_3:16494838-16494857 | None:intergenic | 55.0% | |
| CAAGGATGCAGGGAACGTCA+AGG | - | chr5_3:16494839-16494858 | Msa0802290:intron | 55.0% | |
| ACTTGCGGCTTGAGCTAGCT+AGG | + | chr5_3:16495393-16495412 | None:intergenic | 55.0% | |
| TGGAATGGACCCAGCTCTCA+TGG | - | chr5_3:16495985-16496004 | Msa0802290:intron | 55.0% | |
| GGAATGGACCCAGCTCTCAT+GGG | - | chr5_3:16495986-16496005 | Msa0802290:intron | 55.0% | |
| GTGCATGTCCCATGAGAGCT+GGG | + | chr5_3:16495997-16496016 | None:intergenic | 55.0% | |
| AGTGCATGTCCCATGAGAGC+TGG | + | chr5_3:16495998-16496017 | None:intergenic | 55.0% | |
| GTAGGCCGCAAAACAGTTGG+CGG | + | chr5_3:16496104-16496123 | None:intergenic | 55.0% | |
| !! | CCACTCCTACTTGGCTTGCA+AGG | + | chr5_3:16496704-16496723 | None:intergenic | 55.0% |
| CCTTGCAAGCCAAGTAGGAG+TGG | - | chr5_3:16496701-16496720 | Msa0802290:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 16494384 | 16497032 | 16494384 | ID=Msa0802290;Name=Msa0802290 |
| chr5_3 | mRNA | 16494384 | 16497032 | 16494384 | ID=Msa0802290-mRNA-1;Parent=Msa0802290;Name=Msa0802290-mRNA-1;_AED=0.06;_eAED=0.06;_QI=147|1|1|1|1|1|4|178|311 |
| chr5_3 | exon | 16494384 | 16494722 | 16494384 | ID=Msa0802290-mRNA-1:exon:6946;Parent=Msa0802290-mRNA-1 |
| chr5_3 | exon | 16494879 | 16495082 | 16494879 | ID=Msa0802290-mRNA-1:exon:6945;Parent=Msa0802290-mRNA-1 |
| chr5_3 | exon | 16495211 | 16495451 | 16495211 | ID=Msa0802290-mRNA-1:exon:6944;Parent=Msa0802290-mRNA-1 |
| chr5_3 | exon | 16496556 | 16497032 | 16496556 | ID=Msa0802290-mRNA-1:exon:6943;Parent=Msa0802290-mRNA-1 |
| chr5_3 | five_prime_UTR | 16496886 | 16497032 | 16496886 | ID=Msa0802290-mRNA-1:five_prime_utr;Parent=Msa0802290-mRNA-1 |
| chr5_3 | CDS | 16496556 | 16496885 | 16496556 | ID=Msa0802290-mRNA-1:cds;Parent=Msa0802290-mRNA-1 |
| chr5_3 | CDS | 16495211 | 16495451 | 16495211 | ID=Msa0802290-mRNA-1:cds;Parent=Msa0802290-mRNA-1 |
| chr5_3 | CDS | 16494879 | 16495082 | 16494879 | ID=Msa0802290-mRNA-1:cds;Parent=Msa0802290-mRNA-1 |
| chr5_3 | CDS | 16494562 | 16494722 | 16494562 | ID=Msa0802290-mRNA-1:cds;Parent=Msa0802290-mRNA-1 |
| chr5_3 | three_prime_UTR | 16494384 | 16494561 | 16494384 | ID=Msa0802290-mRNA-1:three_prime_utr;Parent=Msa0802290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
