Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0765000 | XP_003613543.1 | 91.815 | 281 | 22 | 1 | 1 | 281 | 1 | 280 | 0.0 | 528 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0765000 | sp|P59910|DJB13_HUMAN | 34.472 | 322 | 153 | 6 | 3 | 275 | 2 | 314 | 7.87e-53 | 177 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0765000 | G7K8E9 | 91.815 | 281 | 22 | 1 | 1 | 281 | 1 | 280 | 0.0 | 528 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0680660 | Msa0765000 | 0.823858 | 1.104281e-53 | -8.615850e-47 |
Msa0711450 | Msa0765000 | 0.800056 | 1.723318e-48 | -8.615850e-47 |
Msa0765000 | Msa1148980 | 0.804704 | 1.900957e-49 | -8.615850e-47 |
Msa0765000 | Msa1352280 | -0.800327 | 1.517982e-48 | -8.615850e-47 |
Msa0765000 | Msa1425260 | 0.810630 | 1.047732e-50 | -8.615850e-47 |
Msa0765000 | Msa1448560 | 0.801375 | 9.273523e-49 | -8.615850e-47 |
Msa0464100 | Msa0765000 | 0.805432 | 1.338785e-49 | -8.615850e-47 |
Msa0545850 | Msa0765000 | 0.800400 | 1.467068e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0765000 | MtrunA17_Chr5g0415751 | 93.289 | 149 | 10 | 0 | 133 | 281 | 18 | 166 | 7.35e-98 | 284 |
Msa0765000 | MtrunA17_Chr5g0415731 | 89.552 | 134 | 13 | 1 | 1 | 134 | 1 | 133 | 3.16e-84 | 249 |
Msa0765000 | MtrunA17_Chr3g0093111 | 40.823 | 316 | 137 | 5 | 5 | 276 | 2 | 311 | 1.31e-72 | 225 |
Msa0765000 | MtrunA17_Chr4g0006391 | 53.968 | 189 | 86 | 1 | 88 | 276 | 152 | 339 | 8.30e-68 | 214 |
Msa0765000 | MtrunA17_Chr4g0006391 | 51.190 | 84 | 28 | 2 | 5 | 82 | 4 | 80 | 1.05e-18 | 84.7 |
Msa0765000 | MtrunA17_Chr2g0324921 | 55.747 | 174 | 77 | 0 | 102 | 275 | 161 | 334 | 4.72e-67 | 212 |
Msa0765000 | MtrunA17_Chr2g0324921 | 49.462 | 93 | 34 | 2 | 5 | 91 | 4 | 89 | 2.80e-18 | 83.2 |
Msa0765000 | MtrunA17_Chr4g0040501 | 49.490 | 196 | 95 | 1 | 88 | 279 | 152 | 347 | 9.34e-66 | 209 |
Msa0765000 | MtrunA17_Chr4g0040501 | 46.316 | 95 | 38 | 2 | 5 | 93 | 4 | 91 | 1.58e-19 | 87.0 |
Msa0765000 | MtrunA17_Chr2g0282741 | 53.672 | 177 | 82 | 0 | 99 | 275 | 162 | 338 | 1.47e-65 | 208 |
Msa0765000 | MtrunA17_Chr2g0282741 | 52.083 | 96 | 29 | 3 | 5 | 90 | 4 | 92 | 7.24e-21 | 90.5 |
Msa0765000 | MtrunA17_Chr3g0138471 | 54.598 | 174 | 79 | 0 | 102 | 275 | 152 | 325 | 3.52e-63 | 201 |
Msa0765000 | MtrunA17_Chr3g0138471 | 54.667 | 75 | 27 | 1 | 5 | 79 | 4 | 71 | 6.45e-19 | 85.1 |
Msa0765000 | MtrunA17_Chr2g0282761 | 53.086 | 162 | 73 | 1 | 102 | 260 | 169 | 330 | 8.87e-56 | 183 |
Msa0765000 | MtrunA17_Chr2g0282761 | 52.381 | 84 | 30 | 2 | 5 | 88 | 4 | 77 | 3.31e-18 | 83.2 |
Msa0765000 | MtrunA17_Chr3g0124801 | 46.927 | 179 | 94 | 1 | 102 | 279 | 117 | 295 | 5.67e-54 | 177 |
Msa0765000 | MtrunA17_Chr2g0277721 | 42.697 | 178 | 101 | 1 | 101 | 277 | 84 | 261 | 6.41e-44 | 150 |
Msa0765000 | MtrunA17_Chr7g0269841 | 30.395 | 329 | 158 | 9 | 6 | 275 | 27 | 343 | 3.95e-31 | 118 |
Msa0765000 | MtrunA17_Chr2g0322181 | 37.589 | 141 | 86 | 1 | 137 | 275 | 218 | 358 | 1.96e-28 | 112 |
Msa0765000 | MtrunA17_Chr8g0334811 | 37.415 | 147 | 88 | 2 | 133 | 275 | 216 | 362 | 2.95e-28 | 112 |
Msa0765000 | MtrunA17_Chr4g0025401 | 35.461 | 141 | 89 | 1 | 137 | 275 | 216 | 356 | 1.99e-26 | 107 |
Msa0765000 | MtrunA17_Chr3g0091351 | 50.000 | 88 | 44 | 0 | 169 | 256 | 10 | 97 | 5.81e-23 | 90.5 |
Msa0765000 | MtrunA17_Chr7g0271891 | 42.683 | 82 | 42 | 2 | 6 | 87 | 17 | 93 | 1.73e-15 | 72.4 |
Msa0765000 | MtrunA17_Chr4g0044331 | 40.566 | 106 | 53 | 4 | 12 | 113 | 19 | 118 | 3.00e-14 | 68.9 |
Msa0765000 | MtrunA17_Chr6g0478651 | 43.878 | 98 | 44 | 4 | 2 | 98 | 65 | 152 | 1.40e-13 | 70.5 |
Msa0765000 | MtrunA17_Chr7g0263971 | 41.667 | 72 | 35 | 1 | 5 | 76 | 369 | 433 | 4.51e-12 | 65.9 |
Msa0765000 | MtrunA17_Chr4g0021141 | 45.946 | 74 | 32 | 1 | 5 | 78 | 22 | 87 | 4.72e-12 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0765000 | AT3G08910.1 | 44.923 | 325 | 119 | 4 | 5 | 276 | 4 | 321 | 6.27e-90 | 270 |
Msa0765000 | AT4G28480.2 | 44.218 | 294 | 133 | 6 | 5 | 275 | 4 | 289 | 1.65e-77 | 237 |
Msa0765000 | AT1G59725.1 | 43.373 | 332 | 120 | 5 | 5 | 275 | 4 | 328 | 2.09e-77 | 238 |
Msa0765000 | AT5G01390.2 | 44.056 | 286 | 133 | 4 | 5 | 276 | 4 | 276 | 2.33e-76 | 234 |
Msa0765000 | AT5G01390.1 | 38.053 | 339 | 135 | 5 | 5 | 276 | 4 | 334 | 7.05e-72 | 224 |
Msa0765000 | AT1G10350.1 | 53.769 | 199 | 87 | 2 | 77 | 275 | 153 | 346 | 7.57e-72 | 225 |
Msa0765000 | AT1G10350.1 | 57.333 | 75 | 25 | 1 | 5 | 79 | 4 | 71 | 2.21e-20 | 89.7 |
Msa0765000 | AT2G20560.1 | 55.747 | 174 | 77 | 0 | 102 | 275 | 163 | 336 | 3.36e-67 | 213 |
Msa0765000 | AT2G20560.1 | 54.667 | 75 | 27 | 1 | 5 | 79 | 4 | 71 | 6.65e-19 | 85.5 |
Msa0765000 | AT3G47940.1 | 50.500 | 200 | 95 | 2 | 76 | 275 | 151 | 346 | 6.73e-66 | 209 |
Msa0765000 | AT3G47940.1 | 59.211 | 76 | 23 | 2 | 5 | 79 | 4 | 72 | 1.35e-18 | 84.7 |
Msa0765000 | AT4G28480.1 | 52.542 | 177 | 84 | 0 | 99 | 275 | 171 | 347 | 3.12e-64 | 205 |
Msa0765000 | AT4G28480.1 | 47.059 | 102 | 33 | 3 | 5 | 92 | 4 | 98 | 3.65e-19 | 86.3 |
Msa0765000 | AT2G20550.1 | 51.149 | 174 | 85 | 0 | 102 | 275 | 110 | 283 | 1.58e-63 | 201 |
Msa0765000 | AT2G20550.2 | 51.149 | 174 | 85 | 0 | 102 | 275 | 110 | 283 | 1.58e-63 | 201 |
Msa0765000 | AT5G25530.1 | 51.724 | 174 | 84 | 0 | 102 | 275 | 172 | 345 | 5.74e-60 | 194 |
Msa0765000 | AT5G25530.1 | 54.217 | 83 | 23 | 2 | 5 | 79 | 4 | 79 | 4.68e-18 | 83.2 |
Msa0765000 | AT5G25530.2 | 51.724 | 174 | 84 | 0 | 102 | 275 | 164 | 337 | 6.53e-60 | 194 |
Msa0765000 | AT5G25530.2 | 60.000 | 75 | 23 | 1 | 5 | 79 | 4 | 71 | 1.08e-20 | 90.5 |
Msa0765000 | AT5G01390.3 | 35.664 | 286 | 118 | 5 | 5 | 276 | 4 | 237 | 4.62e-50 | 165 |
Msa0765000 | AT1G44160.1 | 44.944 | 178 | 98 | 0 | 102 | 279 | 180 | 357 | 3.95e-48 | 164 |
Msa0765000 | AT1G11040.1 | 42.938 | 177 | 101 | 0 | 101 | 277 | 258 | 434 | 6.72e-45 | 157 |
Msa0765000 | AT3G62600.1 | 30.931 | 333 | 163 | 11 | 1 | 275 | 22 | 345 | 1.85e-32 | 122 |
Msa0765000 | AT3G44110.1 | 35.862 | 145 | 91 | 1 | 137 | 279 | 218 | 362 | 1.33e-27 | 110 |
Msa0765000 | AT5G22060.1 | 35.570 | 149 | 94 | 1 | 133 | 279 | 215 | 363 | 3.97e-27 | 109 |
Msa0765000 | AT3G44110.2 | 36.036 | 111 | 69 | 1 | 137 | 245 | 218 | 328 | 7.44e-20 | 88.2 |
Msa0765000 | AT5G01390.4 | 53.333 | 75 | 28 | 1 | 5 | 79 | 4 | 71 | 2.45e-18 | 82.4 |
Msa0765000 | AT1G56300.2 | 42.857 | 77 | 39 | 2 | 6 | 82 | 14 | 85 | 3.88e-14 | 67.8 |
Msa0765000 | AT1G56300.1 | 42.857 | 77 | 39 | 2 | 6 | 82 | 14 | 85 | 6.95e-14 | 68.2 |
Msa0765000 | AT3G17830.1 | 48.000 | 75 | 30 | 2 | 5 | 79 | 63 | 128 | 1.60e-12 | 67.8 |
Msa0765000 | AT2G22360.1 | 29.457 | 129 | 89 | 2 | 141 | 268 | 295 | 422 | 7.23e-12 | 65.9 |
Msa0765000 | AT4G39960.1 | 27.737 | 137 | 97 | 2 | 141 | 276 | 301 | 436 | 1.16e-11 | 65.1 |
Msa0765000 | AT4G39960.2 | 27.737 | 137 | 97 | 2 | 141 | 276 | 301 | 436 | 1.16e-11 | 65.1 |
Msa0765000 | AT4G10130.2 | 33.663 | 101 | 59 | 2 | 6 | 103 | 12 | 107 | 1.36e-11 | 62.4 |
Msa0765000 | AT4G10130.4 | 33.663 | 101 | 59 | 2 | 6 | 103 | 12 | 107 | 1.36e-11 | 62.4 |
Msa0765000 | AT4G10130.1 | 33.663 | 101 | 59 | 2 | 6 | 103 | 12 | 107 | 1.36e-11 | 62.4 |
Msa0765000 | AT4G10130.3 | 33.663 | 101 | 59 | 2 | 6 | 103 | 12 | 107 | 1.36e-11 | 62.4 |
Msa0765000 | AT4G10130.5 | 33.663 | 101 | 59 | 2 | 6 | 103 | 12 | 107 | 1.36e-11 | 62.4 |
Find 70 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGGTATTGGTTAATCTTATC+TGG | 0.179052 | 5_2:-25492095 | None:intergenic |
ATGAATTATTCAAATCTTCT+AGG | 0.190799 | 5_2:-25492046 | None:intergenic |
CATTAGATTAGCCAAATTAT+AGG | 0.245184 | 5_2:-25494678 | None:intergenic |
TGATTACTAAACCTATAATT+TGG | 0.252064 | 5_2:+25494667 | Msa0765000:exon |
GTCAAAGAGAGAGTGAATTT+TGG | 0.258824 | 5_2:-25491887 | None:intergenic |
TCAATATCCTCCTGTGAATA+TGG | 0.260353 | 5_2:+25492229 | Msa0765000:CDS |
TAGCCTTGAGGAGCTTTATA+AGG | 0.272865 | 5_2:+25492319 | Msa0765000:CDS |
TCATAGATCTGACGCTTCTT+AGG | 0.281173 | 5_2:-25492197 | None:intergenic |
TAGACATATCACAGTTAAAT+TGG | 0.291245 | 5_2:+25494475 | Msa0765000:CDS |
CGTGAAAAGTGCAGAATTAT+CGG | 0.297714 | 5_2:-25491821 | None:intergenic |
TTTCCGTCCCTCTTGAATAT+AGG | 0.310061 | 5_2:-25494374 | None:intergenic |
GACCGAAAAGATATCACTTC+TGG | 0.329613 | 5_2:+25494409 | Msa0765000:CDS |
TCAAACTCTTGTTTCCTTGA+AGG | 0.344256 | 5_2:-25492128 | None:intergenic |
CCTCCTGTGAATATGGAAAA+TGG | 0.346498 | 5_2:+25492236 | Msa0765000:CDS |
AAATGGTGATGGGAGTAATA+TGG | 0.355363 | 5_2:+25492253 | Msa0765000:CDS |
CTAAGATTTCCTCTCTTGCT+TGG | 0.359101 | 5_2:-25494563 | None:intergenic |
TTCTAATCATCACTCTGTTT+CGG | 0.370686 | 5_2:+25491769 | Msa0765000:five_prime_UTR |
AAGGGTTTCTTGAAGGGTAT+TGG | 0.376506 | 5_2:-25492109 | None:intergenic |
TTCCTTGAAGGGTTTCTTGA+AGG | 0.381100 | 5_2:-25492116 | None:intergenic |
GGGAAAGGAAACTATCTTCC+AGG | 0.383769 | 5_2:+25494305 | Msa0765000:CDS |
AGGAATGTTCCTGATGAGTT+TGG | 0.388661 | 5_2:+25492368 | Msa0765000:CDS |
CAAACTCTTGTTTCCTTGAA+GGG | 0.397467 | 5_2:-25492127 | None:intergenic |
TGGAGTTGTTGAGAGTGATT+TGG | 0.415245 | 5_2:+25492292 | Msa0765000:CDS |
GGAAACTATCTTCCAGGATC+TGG | 0.417025 | 5_2:+25494311 | Msa0765000:CDS |
ATAACAATTTAGTTATGAAA+TGG | 0.419493 | 5_2:+25492069 | Msa0765000:CDS |
GGAATGTTCCTGATGAGTTT+GGG | 0.422963 | 5_2:+25492369 | Msa0765000:CDS |
TCACTTCTGGAAGCTCTTGT+TGG | 0.439755 | 5_2:+25494422 | Msa0765000:CDS |
TCCTTGAAGGGTTTCTTGAA+GGG | 0.447257 | 5_2:-25492115 | None:intergenic |
TGAATTATTCAAATCTTCTA+GGG | 0.449404 | 5_2:-25492045 | None:intergenic |
ACATCAGATGGTCCAGATCC+TGG | 0.451615 | 5_2:-25494323 | None:intergenic |
AGCCTTGAGGAGCTTTATAA+GGG | 0.452797 | 5_2:+25492320 | Msa0765000:CDS |
ACCCTTCAAGAAACCCTTCA+AGG | 0.459762 | 5_2:+25492114 | Msa0765000:CDS |
GGAAGATAGTTTCCTTTCCC+AGG | 0.472749 | 5_2:-25494302 | None:intergenic |
GAGGATTACCCAAACTCATC+AGG | 0.474496 | 5_2:-25492377 | None:intergenic |
AAAGGAAGGTGAAAGTTGTA+AGG | 0.495090 | 5_2:+25492348 | Msa0765000:CDS |
TTGCTTGGATCCTTTGAAAG+TGG | 0.501531 | 5_2:-25494548 | None:intergenic |
CTCAACATCACAACCTTGGA+TGG | 0.509868 | 5_2:+25494452 | Msa0765000:CDS |
GAAAAGGTCGTCGCTGATGA+AGG | 0.511756 | 5_2:+25494521 | Msa0765000:CDS |
TATTCAACCTGGTTGGAAGA+AGG | 0.512246 | 5_2:+25494262 | Msa0765000:CDS |
GGTATTGGTTAATCTTATCT+GGG | 0.512734 | 5_2:-25492094 | None:intergenic |
TGTTGTGGGGTCAAACTTGG+TGG | 0.515244 | 5_2:-25494608 | None:intergenic |
TTATAGGTTTAGTAATCAGC+AGG | 0.520440 | 5_2:-25494662 | None:intergenic |
TTCAAGGAAACAAGAGTTTG+AGG | 0.523578 | 5_2:+25492130 | Msa0765000:CDS |
TGAAGGTATGCCACTTTCAA+AGG | 0.534883 | 5_2:+25494538 | Msa0765000:CDS |
GTGAATATGGAAAATGGTGA+TGG | 0.539312 | 5_2:+25492242 | Msa0765000:CDS |
GACTCTCAACATCACAACCT+TGG | 0.539538 | 5_2:+25494448 | Msa0765000:CDS |
TGTGACACCGGGATATGAAA+AGG | 0.540202 | 5_2:+25494505 | Msa0765000:CDS |
AATTTGGTGTGATGAGAGAA+AGG | 0.543533 | 5_2:-25491856 | None:intergenic |
ATTCAACCTGGTTGGAAGAA+GGG | 0.550194 | 5_2:+25494263 | Msa0765000:CDS |
TTTGTACCCTTCTTCCAACC+AGG | 0.551829 | 5_2:-25494269 | None:intergenic |
TTATAAGGGTTGCAAAAGGA+AGG | 0.556592 | 5_2:+25492334 | Msa0765000:CDS |
CGATTACTACAAAACACTAA+AGG | 0.559196 | 5_2:+25492007 | Msa0765000:CDS |
TCCCTCTTGAATATAGGATG+TGG | 0.559598 | 5_2:-25494368 | None:intergenic |
AGCTTTATAAGGGTTGCAAA+AGG | 0.560966 | 5_2:+25492330 | Msa0765000:CDS |
AGATACATATTCAACCTGGT+TGG | 0.563118 | 5_2:+25494255 | Msa0765000:CDS |
ATTGGATGATATTGTGACAC+CGG | 0.564217 | 5_2:+25494493 | Msa0765000:CDS |
TGTGATATGTCTACCATCCA+AGG | 0.580757 | 5_2:-25494465 | None:intergenic |
ATGGAGGTTGATGAAAGTGT+TGG | 0.594938 | 5_2:+25492272 | Msa0765000:CDS |
CGGTAAATAAGAGATTATTG+TGG | 0.607145 | 5_2:-25491801 | None:intergenic |
GACCACATCCTATATTCAAG+AGG | 0.624354 | 5_2:+25494366 | Msa0765000:CDS |
TCAAAGGATCCAAGCAAGAG+AGG | 0.627088 | 5_2:+25494554 | Msa0765000:CDS |
TTGGATGATATTGTGACACC+GGG | 0.630525 | 5_2:+25494494 | Msa0765000:CDS |
CGTCAGATCTATGATCGCAA+TGG | 0.644762 | 5_2:+25492206 | Msa0765000:CDS |
AACCCTTATAAAGCTCCTCA+AGG | 0.648125 | 5_2:-25492322 | None:intergenic |
TTGAAGATACATATTCAACC+TGG | 0.655040 | 5_2:+25494251 | Msa0765000:CDS |
TGATTTGGTATGTAGCCTTG+AGG | 0.655134 | 5_2:+25492307 | Msa0765000:CDS |
CATCCTATATTCAAGAGGGA+CGG | 0.657831 | 5_2:+25494371 | Msa0765000:CDS |
TGGTGATGGGAGTAATATGG+AGG | 0.659763 | 5_2:+25492256 | Msa0765000:CDS |
TGAATATGGAAAATGGTGAT+GGG | 0.659962 | 5_2:+25492243 | Msa0765000:CDS |
ACCACATCCTATATTCAAGA+GGG | 0.666261 | 5_2:+25494367 | Msa0765000:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATAACAAATTAATTAGAT+TGG | - | chr5_2:25492474-25492493 | None:intergenic | 10.0% |
!!! | AATCTAATTAATTTGTTATT+AGG | + | chr5_2:25492473-25492492 | Msa0765000:intron | 10.0% |
!!! | ATCTAATTAATTTGTTATTA+GGG | + | chr5_2:25492474-25492493 | Msa0765000:intron | 10.0% |
!!! | ATCAATCAAATCTTTTTTAA+GGG | - | chr5_2:25491750-25491769 | None:intergenic | 15.0% |
!!! | AATCAATCAAATCTTTTTTA+AGG | - | chr5_2:25491751-25491770 | None:intergenic | 15.0% |
!! | ATAACAATTTAGTTATGAAA+TGG | + | chr5_2:25492069-25492088 | Msa0765000:CDS | 15.0% |
!! | CAAAACAAAAACAAAAATTA+AGG | - | chr5_2:25492408-25492427 | None:intergenic | 15.0% |
!!! | TTTTGTTTTGTTTTGAAATT+CGG | + | chr5_2:25492418-25492437 | Msa0765000:intron | 15.0% |
!!! | CTTATTTTACATATGAATTT+TGG | + | chr5_2:25493605-25493624 | Msa0765000:intron | 15.0% |
!!! | ATTTCAATTGTAAACTTTTT+TGG | + | chr5_2:25493766-25493785 | Msa0765000:intron | 15.0% |
!!! | TATCTGTATTATGTATATTT+TGG | + | chr5_2:25493809-25493828 | Msa0765000:intron | 15.0% |
!!! | TTATGCAATTTTATTTCAAT+TGG | - | chr5_2:25494096-25494115 | None:intergenic | 15.0% |
!!! | CTTTTTTAAGGGAAATATTA+TGG | - | chr5_2:25491739-25491758 | None:intergenic | 20.0% |
!!! | AATTTTGGTGAATAGTAATT+TGG | - | chr5_2:25491875-25491894 | None:intergenic | 20.0% |
!!! | TTTGATGAAATTGAAGTTTT+TGG | - | chr5_2:25491958-25491977 | None:intergenic | 20.0% |
!! | TGAATTATTCAAATCTTCTA+GGG | - | chr5_2:25492048-25492067 | None:intergenic | 20.0% |
!! | ATGAATTATTCAAATCTTCT+AGG | - | chr5_2:25492049-25492068 | None:intergenic | 20.0% |
!!! | AAATTTTAAGAGAATTTCTG+AGG | + | chr5_2:25492154-25492173 | Msa0765000:CDS | 20.0% |
!! | AAAATCACGGATTTAAATAA+AGG | - | chr5_2:25492636-25492655 | None:intergenic | 20.0% |
!! | AAATCAAGTACTAAAAATCA+CGG | - | chr5_2:25492649-25492668 | None:intergenic | 20.0% |
!!! | TAGTACTTGATTTGATTTTT+AGG | + | chr5_2:25492656-25492675 | Msa0765000:intron | 20.0% |
!!! | TAGTTTTGAAAAGCTTATAT+AGG | + | chr5_2:25492813-25492832 | Msa0765000:intron | 20.0% |
!! | TGCATTAGTATTATGATTTA+GGG | - | chr5_2:25493077-25493096 | None:intergenic | 20.0% |
!! | ACCTAACAAATATATTATAC+TGG | + | chr5_2:25493408-25493427 | Msa0765000:intron | 20.0% |
!! | TCCAGTATAATATATTTGTT+AGG | - | chr5_2:25493412-25493431 | None:intergenic | 20.0% |
!! | TATTTGATACACACTTAATT+AGG | + | chr5_2:25493462-25493481 | Msa0765000:intron | 20.0% |
!!! | TTTTACATATGAATTTTGGA+TGG | + | chr5_2:25493609-25493628 | Msa0765000:intron | 20.0% |
!!! | TTACATCATATTTTTGTTGT+GGG | - | chr5_2:25494625-25494644 | None:intergenic | 20.0% |
!! | AACAAAAATATGATGTAAGA+AGG | + | chr5_2:25494627-25494646 | Msa0765000:CDS | 20.0% |
!! | TGATTACTAAACCTATAATT+TGG | + | chr5_2:25494667-25494686 | Msa0765000:exon | 20.0% |
!! | ATTCATCAACTTTTCTCAAA+TGG | + | chr5_2:25491977-25491996 | Msa0765000:exon | 25.0% |
!! | TTCATCAACTTTTCTCAAAT+GGG | + | chr5_2:25491978-25491997 | Msa0765000:exon | 25.0% |
! | AACAAAAATTAAGGAGAAAG+AGG | - | chr5_2:25492399-25492418 | None:intergenic | 25.0% |
!!! | GTTATTAGGGTTTTATTTAG+TGG | + | chr5_2:25492487-25492506 | Msa0765000:intron | 25.0% |
!! | AAACTGTAAGTTGTTTCAAT+AGG | - | chr5_2:25492939-25492958 | None:intergenic | 25.0% |
!! | AACATTTGTTACTTAAAGCT+TGG | + | chr5_2:25493027-25493046 | Msa0765000:intron | 25.0% |
! | GCATTAGTATTATGATTTAG+GGG | - | chr5_2:25493076-25493095 | None:intergenic | 25.0% |
! | CTGCATTAGTATTATGATTT+AGG | - | chr5_2:25493078-25493097 | None:intergenic | 25.0% |
! | ACAATGATATGTTACACAAA+AGG | - | chr5_2:25493102-25493121 | None:intergenic | 25.0% |
!! | TTTTGAATTCTGCAAATGAA+AGG | + | chr5_2:25493180-25493199 | Msa0765000:intron | 25.0% |
!!! | GTTTTTACTAGTTTTGAAAC+AGG | + | chr5_2:25493202-25493221 | Msa0765000:intron | 25.0% |
!!! | ATACATAAGTTGGTTTAACA+AGG | + | chr5_2:25494175-25494194 | Msa0765000:intron | 25.0% |
!! | AGGAGTTTTCTTTTCTAAAT+TGG | + | chr5_2:25494195-25494214 | Msa0765000:intron | 25.0% |
!!! | CTTTTCTAAATTGGTTTTAC+AGG | + | chr5_2:25494204-25494223 | Msa0765000:intron | 25.0% |
! | TAGACATATCACAGTTAAAT+TGG | + | chr5_2:25494475-25494494 | Msa0765000:CDS | 25.0% |
!!! | TACATCATATTTTTGTTGTG+GGG | - | chr5_2:25494624-25494643 | None:intergenic | 25.0% |
!!! | CTTACATCATATTTTTGTTG+TGG | - | chr5_2:25494626-25494645 | None:intergenic | 25.0% |
!! | CATTAGATTAGCCAAATTAT+AGG | - | chr5_2:25494681-25494700 | None:intergenic | 25.0% |
TTCTAATCATCACTCTGTTT+CGG | + | chr5_2:25491769-25491788 | Msa0765000:five_prime_UTR | 30.0% | |
CGGTAAATAAGAGATTATTG+TGG | - | chr5_2:25491804-25491823 | None:intergenic | 30.0% | |
CGATTACTACAAAACACTAA+AGG | + | chr5_2:25492007-25492026 | Msa0765000:CDS | 30.0% | |
!! | GGTATTGGTTAATCTTATCT+GGG | - | chr5_2:25492097-25492116 | None:intergenic | 30.0% |
TGAATATGGAAAATGGTGAT+GGG | + | chr5_2:25492243-25492262 | Msa0765000:CDS | 30.0% | |
TTTATTTAGTGGTTGTGTTG+CGG | + | chr5_2:25492498-25492517 | Msa0765000:intron | 30.0% | |
GGTTGCATGTATAAGATAAT+TGG | + | chr5_2:25492677-25492696 | Msa0765000:intron | 30.0% | |
!!! | CATTGCATGTTTGTTTTTGT+TGG | + | chr5_2:25492722-25492741 | Msa0765000:intron | 30.0% |
!!! | GTTTGTTTTTGTTGGCTATT+AGG | + | chr5_2:25492730-25492749 | Msa0765000:intron | 30.0% |
TAAACACTTGTGCAAATGTT+TGG | + | chr5_2:25492850-25492869 | Msa0765000:intron | 30.0% | |
AAACACTTGTGCAAATGTTT+GGG | + | chr5_2:25492851-25492870 | Msa0765000:intron | 30.0% | |
! | TTGTTACTTAAAGCTTGGTT+AGG | + | chr5_2:25493032-25493051 | Msa0765000:intron | 30.0% |
!!! | TTACTAGTTTTGAAACAGGT+TGG | + | chr5_2:25493206-25493225 | Msa0765000:intron | 30.0% |
AAACTGTAAGTTGTTCCTAT+AGG | - | chr5_2:25493371-25493390 | None:intergenic | 30.0% | |
! | TGCATTAGTATTTGGAGTTA+GGG | - | chr5_2:25493507-25493526 | None:intergenic | 30.0% |
ACAGTGATATGTAACACAAA+TGG | - | chr5_2:25493532-25493551 | None:intergenic | 30.0% | |
! | TGAATTTTGGATGGTTTACT+TGG | + | chr5_2:25493618-25493637 | Msa0765000:intron | 30.0% |
!!! | TGCTGTTATTATGCTACTTT+TGG | + | chr5_2:25493712-25493731 | Msa0765000:intron | 30.0% |
ACATCTCGAATACTAAAGAA+AGG | - | chr5_2:25493905-25493924 | None:intergenic | 30.0% | |
TTGAAGATACATATTCAACC+TGG | + | chr5_2:25494251-25494270 | Msa0765000:CDS | 30.0% | |
! | ACCATCTGATGTAATTTTTG+TGG | + | chr5_2:25494334-25494353 | Msa0765000:CDS | 30.0% |
ACCACAAAAATTACATCAGA+TGG | - | chr5_2:25494338-25494357 | None:intergenic | 30.0% | |
! | TTCCAGAAGTGATATCTTTT+CGG | - | chr5_2:25494414-25494433 | None:intergenic | 30.0% |
TTATAGGTTTAGTAATCAGC+AGG | - | chr5_2:25494665-25494684 | None:intergenic | 30.0% | |
! | CGTGAAAAGTGCAGAATTAT+CGG | - | chr5_2:25491824-25491843 | None:intergenic | 35.0% |
!! | AATTTGGTGTGATGAGAGAA+AGG | - | chr5_2:25491859-25491878 | None:intergenic | 35.0% |
! | GTCAAAGAGAGAGTGAATTT+TGG | - | chr5_2:25491890-25491909 | None:intergenic | 35.0% |
!! | GGGTATTGGTTAATCTTATC+TGG | - | chr5_2:25492098-25492117 | None:intergenic | 35.0% |
! | CAAACTCTTGTTTCCTTGAA+GGG | - | chr5_2:25492130-25492149 | None:intergenic | 35.0% |
! | TCAAACTCTTGTTTCCTTGA+AGG | - | chr5_2:25492131-25492150 | None:intergenic | 35.0% |
TTCAAGGAAACAAGAGTTTG+AGG | + | chr5_2:25492130-25492149 | Msa0765000:CDS | 35.0% | |
TCAATATCCTCCTGTGAATA+TGG | + | chr5_2:25492229-25492248 | Msa0765000:CDS | 35.0% | |
! | TCACCATTTTCCATATTCAC+AGG | - | chr5_2:25492242-25492261 | None:intergenic | 35.0% |
GTGAATATGGAAAATGGTGA+TGG | + | chr5_2:25492242-25492261 | Msa0765000:CDS | 35.0% | |
!! | AAATGGTGATGGGAGTAATA+TGG | + | chr5_2:25492253-25492272 | Msa0765000:CDS | 35.0% |
! | AGCTTTATAAGGGTTGCAAA+AGG | + | chr5_2:25492330-25492349 | Msa0765000:CDS | 35.0% |
TTATAAGGGTTGCAAAAGGA+AGG | + | chr5_2:25492334-25492353 | Msa0765000:CDS | 35.0% | |
AAAGGAAGGTGAAAGTTGTA+AGG | + | chr5_2:25492348-25492367 | Msa0765000:CDS | 35.0% | |
TATAAGAACCGACTAATCTG+AGG | + | chr5_2:25492446-25492465 | Msa0765000:intron | 35.0% | |
ATAAGAACCGACTAATCTGA+GGG | + | chr5_2:25492447-25492466 | Msa0765000:intron | 35.0% | |
AAAATGAAGTGAAGCCGATA+AGG | + | chr5_2:25492547-25492566 | Msa0765000:intron | 35.0% | |
!!! | TTATGATTTAGGGGTGCTTT+TGG | - | chr5_2:25493067-25493086 | None:intergenic | 35.0% |
TAACCACTTGTGAAAATGTC+TGG | + | chr5_2:25493262-25493281 | Msa0765000:intron | 35.0% | |
TTGTTCCTATAGGCTATCAT+GGG | - | chr5_2:25493361-25493380 | None:intergenic | 35.0% | |
! | GCATTAGTATTTGGAGTTAG+GGG | - | chr5_2:25493506-25493525 | None:intergenic | 35.0% |
! | GTGCATTAGTATTTGGAGTT+AGG | - | chr5_2:25493508-25493527 | None:intergenic | 35.0% |
AAATGGCGTGCATTAGTATT+TGG | - | chr5_2:25493515-25493534 | None:intergenic | 35.0% | |
TCGAATACTAAAGAAAGGAG+TGG | - | chr5_2:25493900-25493919 | None:intergenic | 35.0% | |
TAGAATGTAACCACATGTGT+TGG | + | chr5_2:25493959-25493978 | Msa0765000:intron | 35.0% | |
CTGTGTAACATATGATTGAG+TGG | + | chr5_2:25494028-25494047 | Msa0765000:intron | 35.0% | |
TAACATATGATTGAGTGGCT+TGG | + | chr5_2:25494033-25494052 | Msa0765000:intron | 35.0% | |
GGCTTAGTGTAACAGTAAAT+AGG | - | chr5_2:25494075-25494094 | None:intergenic | 35.0% | |
TGTATCCAAGCAAAGTGAAA+AGG | - | chr5_2:25494160-25494179 | None:intergenic | 35.0% | |
CTTTGCTTGGATACATAAGT+TGG | + | chr5_2:25494165-25494184 | Msa0765000:intron | 35.0% | |
AGATACATATTCAACCTGGT+TGG | + | chr5_2:25494255-25494274 | Msa0765000:CDS | 35.0% | |
!!! | GTACAAAAGTCACTTTTCCT+GGG | + | chr5_2:25494285-25494304 | Msa0765000:CDS | 35.0% |
ACCACATCCTATATTCAAGA+GGG | + | chr5_2:25494367-25494386 | Msa0765000:CDS | 35.0% | |
ATTGGATGATATTGTGACAC+CGG | + | chr5_2:25494493-25494512 | Msa0765000:CDS | 35.0% | |
! | AAGGGTTTCTTGAAGGGTAT+TGG | - | chr5_2:25492112-25492131 | None:intergenic | 40.0% |
TCCTTGAAGGGTTTCTTGAA+GGG | - | chr5_2:25492118-25492137 | None:intergenic | 40.0% | |
TTCCTTGAAGGGTTTCTTGA+AGG | - | chr5_2:25492119-25492138 | None:intergenic | 40.0% | |
TCATAGATCTGACGCTTCTT+AGG | - | chr5_2:25492200-25492219 | None:intergenic | 40.0% | |
! | CCATTTTCCATATTCACAGG+AGG | - | chr5_2:25492239-25492258 | None:intergenic | 40.0% |
CCTCCTGTGAATATGGAAAA+TGG | + | chr5_2:25492236-25492255 | Msa0765000:CDS | 40.0% | |
!! | ATGGAGGTTGATGAAAGTGT+TGG | + | chr5_2:25492272-25492291 | Msa0765000:CDS | 40.0% |
TGGAGTTGTTGAGAGTGATT+TGG | + | chr5_2:25492292-25492311 | Msa0765000:CDS | 40.0% | |
!! | TGATTTGGTATGTAGCCTTG+AGG | + | chr5_2:25492307-25492326 | Msa0765000:CDS | 40.0% |
! | TAGCCTTGAGGAGCTTTATA+AGG | + | chr5_2:25492319-25492338 | Msa0765000:CDS | 40.0% |
! | AGCCTTGAGGAGCTTTATAA+GGG | + | chr5_2:25492320-25492339 | Msa0765000:CDS | 40.0% |
AACCCTTATAAAGCTCCTCA+AGG | - | chr5_2:25492325-25492344 | None:intergenic | 40.0% | |
AGGAATGTTCCTGATGAGTT+TGG | + | chr5_2:25492368-25492387 | Msa0765000:CDS | 40.0% | |
GGAATGTTCCTGATGAGTTT+GGG | + | chr5_2:25492369-25492388 | Msa0765000:CDS | 40.0% | |
TGTGATATTGCTGAGAATCG+CGG | + | chr5_2:25492523-25492542 | Msa0765000:intron | 40.0% | |
! | AACCGCAATTGAAGCCTTAT+CGG | - | chr5_2:25492564-25492583 | None:intergenic | 40.0% |
! | TAAGGCTTCAATTGCGGTTT+TGG | + | chr5_2:25492565-25492584 | Msa0765000:intron | 40.0% |
!!! | AGTTTTGAAACAGGTTGGTC+TGG | + | chr5_2:25493211-25493230 | Msa0765000:intron | 40.0% |
!!! | GTTTTGAAACAGGTTGGTCT+GGG | + | chr5_2:25493212-25493231 | Msa0765000:intron | 40.0% |
TTGGTCTGGGAAGCTTATTT+AGG | + | chr5_2:25493225-25493244 | Msa0765000:intron | 40.0% | |
! | CTTCCAGACATTTTCACAAG+TGG | - | chr5_2:25493268-25493287 | None:intergenic | 40.0% |
TGTTCCTATAGGCTATCATG+GGG | - | chr5_2:25493360-25493379 | None:intergenic | 40.0% | |
GTTGTTCCTATAGGCTATCA+TGG | - | chr5_2:25493362-25493381 | None:intergenic | 40.0% | |
ATGTGACAAAATGACAGCAC+AGG | - | chr5_2:25493668-25493687 | None:intergenic | 40.0% | |
ATACTAAAGAAAGGAGTGGC+TGG | - | chr5_2:25493896-25493915 | None:intergenic | 40.0% | |
GTTTCTTACACCAACACATG+TGG | - | chr5_2:25493972-25493991 | None:intergenic | 40.0% | |
! | ACGTGTTTAGTCTGAAGTGT+CGG | + | chr5_2:25493996-25494015 | Msa0765000:intron | 40.0% |
AAGCAAAGTGAAAAGGAAGG+AGG | - | chr5_2:25494153-25494172 | None:intergenic | 40.0% | |
! | TCCTTCCTTTTCACTTTGCT+TGG | + | chr5_2:25494152-25494171 | Msa0765000:intron | 40.0% |
TCCAAGCAAAGTGAAAAGGA+AGG | - | chr5_2:25494156-25494175 | None:intergenic | 40.0% | |
TATTCAACCTGGTTGGAAGA+AGG | + | chr5_2:25494262-25494281 | Msa0765000:CDS | 40.0% | |
ATTCAACCTGGTTGGAAGAA+GGG | + | chr5_2:25494263-25494282 | Msa0765000:CDS | 40.0% | |
!!! | GGTACAAAAGTCACTTTTCC+TGG | + | chr5_2:25494284-25494303 | Msa0765000:CDS | 40.0% |
!!! | AAAGTCACTTTTCCTGGGAA+AGG | + | chr5_2:25494290-25494309 | Msa0765000:CDS | 40.0% |
GACCACATCCTATATTCAAG+AGG | + | chr5_2:25494366-25494385 | Msa0765000:CDS | 40.0% | |
TCCCTCTTGAATATAGGATG+TGG | - | chr5_2:25494371-25494390 | None:intergenic | 40.0% | |
CATCCTATATTCAAGAGGGA+CGG | + | chr5_2:25494371-25494390 | Msa0765000:CDS | 40.0% | |
TTTCCGTCCCTCTTGAATAT+AGG | - | chr5_2:25494377-25494396 | None:intergenic | 40.0% | |
GACCGAAAAGATATCACTTC+TGG | + | chr5_2:25494409-25494428 | Msa0765000:CDS | 40.0% | |
TGTGATATGTCTACCATCCA+AGG | - | chr5_2:25494468-25494487 | None:intergenic | 40.0% | |
TTGGATGATATTGTGACACC+GGG | + | chr5_2:25494494-25494513 | Msa0765000:CDS | 40.0% | |
!! | TGAAGGTATGCCACTTTCAA+AGG | + | chr5_2:25494538-25494557 | Msa0765000:CDS | 40.0% |
! | TTGCTTGGATCCTTTGAAAG+TGG | - | chr5_2:25494551-25494570 | None:intergenic | 40.0% |
CTAAGATTTCCTCTCTTGCT+TGG | - | chr5_2:25494566-25494585 | None:intergenic | 40.0% | |
!! | TTTTGTTGTGGGGTCAAACT+TGG | - | chr5_2:25494614-25494633 | None:intergenic | 40.0% |
ACCCTTCAAGAAACCCTTCA+AGG | + | chr5_2:25492114-25492133 | Msa0765000:CDS | 45.0% | |
CGTCAGATCTATGATCGCAA+TGG | + | chr5_2:25492206-25492225 | Msa0765000:CDS | 45.0% | |
!! | TGGTGATGGGAGTAATATGG+AGG | + | chr5_2:25492256-25492275 | Msa0765000:CDS | 45.0% |
GAGGATTACCCAAACTCATC+AGG | - | chr5_2:25492380-25492399 | None:intergenic | 45.0% | |
! | GATTGGTCCCTCAGATTAGT+CGG | - | chr5_2:25492457-25492476 | None:intergenic | 45.0% |
GCGATTCTCAGCAATATCAC+AGG | - | chr5_2:25492524-25492543 | None:intergenic | 45.0% | |
AGCCGATAAGGCTTCAATTG+CGG | + | chr5_2:25492559-25492578 | Msa0765000:intron | 45.0% | |
ATCACCCCATGATAGCCTAT+AGG | + | chr5_2:25493353-25493372 | Msa0765000:intron | 45.0% | |
TTTGTACCCTTCTTCCAACC+AGG | - | chr5_2:25494272-25494291 | None:intergenic | 45.0% | |
GGAAGATAGTTTCCTTTCCC+AGG | - | chr5_2:25494305-25494324 | None:intergenic | 45.0% | |
GGGAAAGGAAACTATCTTCC+AGG | + | chr5_2:25494305-25494324 | Msa0765000:CDS | 45.0% | |
GGAAACTATCTTCCAGGATC+TGG | + | chr5_2:25494311-25494330 | Msa0765000:CDS | 45.0% | |
! | TCACTTCTGGAAGCTCTTGT+TGG | + | chr5_2:25494422-25494441 | Msa0765000:CDS | 45.0% |
GACTCTCAACATCACAACCT+TGG | + | chr5_2:25494448-25494467 | Msa0765000:CDS | 45.0% | |
CTCAACATCACAACCTTGGA+TGG | + | chr5_2:25494452-25494471 | Msa0765000:CDS | 45.0% | |
TGTGACACCGGGATATGAAA+AGG | + | chr5_2:25494505-25494524 | Msa0765000:CDS | 45.0% | |
TCAAAGGATCCAAGCAAGAG+AGG | + | chr5_2:25494554-25494573 | Msa0765000:CDS | 45.0% | |
TGACAGCACAGGCAACATCA+TGG | - | chr5_2:25493657-25493676 | None:intergenic | 50.0% | |
ACAGGCAACCAAAGGATGAG+GGG | - | chr5_2:25493873-25493892 | None:intergenic | 50.0% | |
GACAGGCAACCAAAGGATGA+GGG | - | chr5_2:25493874-25493893 | None:intergenic | 50.0% | |
AAAGAAAGGAGTGGCTGGAC+AGG | - | chr5_2:25493891-25493910 | None:intergenic | 50.0% | |
ACATCAGATGGTCCAGATCC+TGG | - | chr5_2:25494326-25494345 | None:intergenic | 50.0% | |
! | GCGACGACCTTTTCATATCC+CGG | - | chr5_2:25494515-25494534 | None:intergenic | 50.0% |
GAAAAGGTCGTCGCTGATGA+AGG | + | chr5_2:25494521-25494540 | Msa0765000:CDS | 50.0% | |
TGTTGTGGGGTCAAACTTGG+TGG | - | chr5_2:25494611-25494630 | None:intergenic | 50.0% | |
AGGGGCAGGCAGGTATAAGA+AGG | - | chr5_2:25493855-25493874 | None:intergenic | 55.0% | |
GGACAGGCAACCAAAGGATG+AGG | - | chr5_2:25493875-25493894 | None:intergenic | 55.0% | |
GCAACCAAAGGATGAGGGGC+AGG | - | chr5_2:25493869-25493888 | None:intergenic | 60.0% | |
GTGGCTGGACAGGCAACCAA+AGG | - | chr5_2:25493881-25493900 | None:intergenic | 60.0% | |
CCAAAGGATGAGGGGCAGGC+AGG | - | chr5_2:25493865-25493884 | None:intergenic | 65.0% | |
CCTGCCTGCCCCTCATCCTT+TGG | + | chr5_2:25493862-25493881 | Msa0765000:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_2 | gene | 25491727 | 25494797 | 25491727 | ID=Msa0765000;Name=Msa0765000 |
chr5_2 | mRNA | 25491727 | 25494797 | 25491727 | ID=Msa0765000-mRNA-1;Parent=Msa0765000;Name=Msa0765000-mRNA-1;_AED=0.04;_eAED=0.04;_QI=269|1|1|1|1|1|2|121|281 |
chr5_2 | exon | 25491727 | 25492390 | 25491727 | ID=Msa0765000-mRNA-1:exon:10271;Parent=Msa0765000-mRNA-1 |
chr5_2 | exon | 25494226 | 25494797 | 25494226 | ID=Msa0765000-mRNA-1:exon:10272;Parent=Msa0765000-mRNA-1 |
chr5_2 | five_prime_UTR | 25491727 | 25491995 | 25491727 | ID=Msa0765000-mRNA-1:five_prime_utr;Parent=Msa0765000-mRNA-1 |
chr5_2 | CDS | 25491996 | 25492390 | 25491996 | ID=Msa0765000-mRNA-1:cds;Parent=Msa0765000-mRNA-1 |
chr5_2 | CDS | 25494226 | 25494676 | 25494226 | ID=Msa0765000-mRNA-1:cds;Parent=Msa0765000-mRNA-1 |
chr5_2 | three_prime_UTR | 25494677 | 25494797 | 25494677 | ID=Msa0765000-mRNA-1:three_prime_utr;Parent=Msa0765000-mRNA-1 |
Gene Sequence |
Protein sequence |