AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0765000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0765000 MtrunA17_Chr5g0415751 93.289 149 10 0 133 281 18 166 7.35e-98 284
Msa0765000 MtrunA17_Chr5g0415731 89.552 134 13 1 1 134 1 133 3.16e-84 249
Msa0765000 MtrunA17_Chr3g0093111 40.823 316 137 5 5 276 2 311 1.31e-72 225
Msa0765000 MtrunA17_Chr4g0006391 53.968 189 86 1 88 276 152 339 8.30e-68 214
Msa0765000 MtrunA17_Chr4g0006391 51.190 84 28 2 5 82 4 80 1.05e-18 84.7
Msa0765000 MtrunA17_Chr2g0324921 55.747 174 77 0 102 275 161 334 4.72e-67 212
Msa0765000 MtrunA17_Chr2g0324921 49.462 93 34 2 5 91 4 89 2.80e-18 83.2
Msa0765000 MtrunA17_Chr4g0040501 49.490 196 95 1 88 279 152 347 9.34e-66 209
Msa0765000 MtrunA17_Chr4g0040501 46.316 95 38 2 5 93 4 91 1.58e-19 87.0
Msa0765000 MtrunA17_Chr2g0282741 53.672 177 82 0 99 275 162 338 1.47e-65 208
Msa0765000 MtrunA17_Chr2g0282741 52.083 96 29 3 5 90 4 92 7.24e-21 90.5
Msa0765000 MtrunA17_Chr3g0138471 54.598 174 79 0 102 275 152 325 3.52e-63 201
Msa0765000 MtrunA17_Chr3g0138471 54.667 75 27 1 5 79 4 71 6.45e-19 85.1
Msa0765000 MtrunA17_Chr2g0282761 53.086 162 73 1 102 260 169 330 8.87e-56 183
Msa0765000 MtrunA17_Chr2g0282761 52.381 84 30 2 5 88 4 77 3.31e-18 83.2
Msa0765000 MtrunA17_Chr3g0124801 46.927 179 94 1 102 279 117 295 5.67e-54 177
Msa0765000 MtrunA17_Chr2g0277721 42.697 178 101 1 101 277 84 261 6.41e-44 150
Msa0765000 MtrunA17_Chr7g0269841 30.395 329 158 9 6 275 27 343 3.95e-31 118
Msa0765000 MtrunA17_Chr2g0322181 37.589 141 86 1 137 275 218 358 1.96e-28 112
Msa0765000 MtrunA17_Chr8g0334811 37.415 147 88 2 133 275 216 362 2.95e-28 112
Msa0765000 MtrunA17_Chr4g0025401 35.461 141 89 1 137 275 216 356 1.99e-26 107
Msa0765000 MtrunA17_Chr3g0091351 50.000 88 44 0 169 256 10 97 5.81e-23 90.5
Msa0765000 MtrunA17_Chr7g0271891 42.683 82 42 2 6 87 17 93 1.73e-15 72.4
Msa0765000 MtrunA17_Chr4g0044331 40.566 106 53 4 12 113 19 118 3.00e-14 68.9
Msa0765000 MtrunA17_Chr6g0478651 43.878 98 44 4 2 98 65 152 1.40e-13 70.5
Msa0765000 MtrunA17_Chr7g0263971 41.667 72 35 1 5 76 369 433 4.51e-12 65.9
Msa0765000 MtrunA17_Chr4g0021141 45.946 74 32 1 5 78 22 87 4.72e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0765000 AT3G08910.1 44.923 325 119 4 5 276 4 321 6.27e-90 270
Msa0765000 AT4G28480.2 44.218 294 133 6 5 275 4 289 1.65e-77 237
Msa0765000 AT1G59725.1 43.373 332 120 5 5 275 4 328 2.09e-77 238
Msa0765000 AT5G01390.2 44.056 286 133 4 5 276 4 276 2.33e-76 234
Msa0765000 AT5G01390.1 38.053 339 135 5 5 276 4 334 7.05e-72 224
Msa0765000 AT1G10350.1 53.769 199 87 2 77 275 153 346 7.57e-72 225
Msa0765000 AT1G10350.1 57.333 75 25 1 5 79 4 71 2.21e-20 89.7
Msa0765000 AT2G20560.1 55.747 174 77 0 102 275 163 336 3.36e-67 213
Msa0765000 AT2G20560.1 54.667 75 27 1 5 79 4 71 6.65e-19 85.5
Msa0765000 AT3G47940.1 50.500 200 95 2 76 275 151 346 6.73e-66 209
Msa0765000 AT3G47940.1 59.211 76 23 2 5 79 4 72 1.35e-18 84.7
Msa0765000 AT4G28480.1 52.542 177 84 0 99 275 171 347 3.12e-64 205
Msa0765000 AT4G28480.1 47.059 102 33 3 5 92 4 98 3.65e-19 86.3
Msa0765000 AT2G20550.1 51.149 174 85 0 102 275 110 283 1.58e-63 201
Msa0765000 AT2G20550.2 51.149 174 85 0 102 275 110 283 1.58e-63 201
Msa0765000 AT5G25530.1 51.724 174 84 0 102 275 172 345 5.74e-60 194
Msa0765000 AT5G25530.1 54.217 83 23 2 5 79 4 79 4.68e-18 83.2
Msa0765000 AT5G25530.2 51.724 174 84 0 102 275 164 337 6.53e-60 194
Msa0765000 AT5G25530.2 60.000 75 23 1 5 79 4 71 1.08e-20 90.5
Msa0765000 AT5G01390.3 35.664 286 118 5 5 276 4 237 4.62e-50 165
Msa0765000 AT1G44160.1 44.944 178 98 0 102 279 180 357 3.95e-48 164
Msa0765000 AT1G11040.1 42.938 177 101 0 101 277 258 434 6.72e-45 157
Msa0765000 AT3G62600.1 30.931 333 163 11 1 275 22 345 1.85e-32 122
Msa0765000 AT3G44110.1 35.862 145 91 1 137 279 218 362 1.33e-27 110
Msa0765000 AT5G22060.1 35.570 149 94 1 133 279 215 363 3.97e-27 109
Msa0765000 AT3G44110.2 36.036 111 69 1 137 245 218 328 7.44e-20 88.2
Msa0765000 AT5G01390.4 53.333 75 28 1 5 79 4 71 2.45e-18 82.4
Msa0765000 AT1G56300.2 42.857 77 39 2 6 82 14 85 3.88e-14 67.8
Msa0765000 AT1G56300.1 42.857 77 39 2 6 82 14 85 6.95e-14 68.2
Msa0765000 AT3G17830.1 48.000 75 30 2 5 79 63 128 1.60e-12 67.8
Msa0765000 AT2G22360.1 29.457 129 89 2 141 268 295 422 7.23e-12 65.9
Msa0765000 AT4G39960.1 27.737 137 97 2 141 276 301 436 1.16e-11 65.1
Msa0765000 AT4G39960.2 27.737 137 97 2 141 276 301 436 1.16e-11 65.1
Msa0765000 AT4G10130.2 33.663 101 59 2 6 103 12 107 1.36e-11 62.4
Msa0765000 AT4G10130.4 33.663 101 59 2 6 103 12 107 1.36e-11 62.4
Msa0765000 AT4G10130.1 33.663 101 59 2 6 103 12 107 1.36e-11 62.4
Msa0765000 AT4G10130.3 33.663 101 59 2 6 103 12 107 1.36e-11 62.4
Msa0765000 AT4G10130.5 33.663 101 59 2 6 103 12 107 1.36e-11 62.4

Find 70 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTATTGGTTAATCTTATC+TGG 0.179052 5_2:-25492095 None:intergenic
ATGAATTATTCAAATCTTCT+AGG 0.190799 5_2:-25492046 None:intergenic
CATTAGATTAGCCAAATTAT+AGG 0.245184 5_2:-25494678 None:intergenic
TGATTACTAAACCTATAATT+TGG 0.252064 5_2:+25494667 Msa0765000:exon
GTCAAAGAGAGAGTGAATTT+TGG 0.258824 5_2:-25491887 None:intergenic
TCAATATCCTCCTGTGAATA+TGG 0.260353 5_2:+25492229 Msa0765000:CDS
TAGCCTTGAGGAGCTTTATA+AGG 0.272865 5_2:+25492319 Msa0765000:CDS
TCATAGATCTGACGCTTCTT+AGG 0.281173 5_2:-25492197 None:intergenic
TAGACATATCACAGTTAAAT+TGG 0.291245 5_2:+25494475 Msa0765000:CDS
CGTGAAAAGTGCAGAATTAT+CGG 0.297714 5_2:-25491821 None:intergenic
TTTCCGTCCCTCTTGAATAT+AGG 0.310061 5_2:-25494374 None:intergenic
GACCGAAAAGATATCACTTC+TGG 0.329613 5_2:+25494409 Msa0765000:CDS
TCAAACTCTTGTTTCCTTGA+AGG 0.344256 5_2:-25492128 None:intergenic
CCTCCTGTGAATATGGAAAA+TGG 0.346498 5_2:+25492236 Msa0765000:CDS
AAATGGTGATGGGAGTAATA+TGG 0.355363 5_2:+25492253 Msa0765000:CDS
CTAAGATTTCCTCTCTTGCT+TGG 0.359101 5_2:-25494563 None:intergenic
TTCTAATCATCACTCTGTTT+CGG 0.370686 5_2:+25491769 Msa0765000:five_prime_UTR
AAGGGTTTCTTGAAGGGTAT+TGG 0.376506 5_2:-25492109 None:intergenic
TTCCTTGAAGGGTTTCTTGA+AGG 0.381100 5_2:-25492116 None:intergenic
GGGAAAGGAAACTATCTTCC+AGG 0.383769 5_2:+25494305 Msa0765000:CDS
AGGAATGTTCCTGATGAGTT+TGG 0.388661 5_2:+25492368 Msa0765000:CDS
CAAACTCTTGTTTCCTTGAA+GGG 0.397467 5_2:-25492127 None:intergenic
TGGAGTTGTTGAGAGTGATT+TGG 0.415245 5_2:+25492292 Msa0765000:CDS
GGAAACTATCTTCCAGGATC+TGG 0.417025 5_2:+25494311 Msa0765000:CDS
ATAACAATTTAGTTATGAAA+TGG 0.419493 5_2:+25492069 Msa0765000:CDS
GGAATGTTCCTGATGAGTTT+GGG 0.422963 5_2:+25492369 Msa0765000:CDS
TCACTTCTGGAAGCTCTTGT+TGG 0.439755 5_2:+25494422 Msa0765000:CDS
TCCTTGAAGGGTTTCTTGAA+GGG 0.447257 5_2:-25492115 None:intergenic
TGAATTATTCAAATCTTCTA+GGG 0.449404 5_2:-25492045 None:intergenic
ACATCAGATGGTCCAGATCC+TGG 0.451615 5_2:-25494323 None:intergenic
AGCCTTGAGGAGCTTTATAA+GGG 0.452797 5_2:+25492320 Msa0765000:CDS
ACCCTTCAAGAAACCCTTCA+AGG 0.459762 5_2:+25492114 Msa0765000:CDS
GGAAGATAGTTTCCTTTCCC+AGG 0.472749 5_2:-25494302 None:intergenic
GAGGATTACCCAAACTCATC+AGG 0.474496 5_2:-25492377 None:intergenic
AAAGGAAGGTGAAAGTTGTA+AGG 0.495090 5_2:+25492348 Msa0765000:CDS
TTGCTTGGATCCTTTGAAAG+TGG 0.501531 5_2:-25494548 None:intergenic
CTCAACATCACAACCTTGGA+TGG 0.509868 5_2:+25494452 Msa0765000:CDS
GAAAAGGTCGTCGCTGATGA+AGG 0.511756 5_2:+25494521 Msa0765000:CDS
TATTCAACCTGGTTGGAAGA+AGG 0.512246 5_2:+25494262 Msa0765000:CDS
GGTATTGGTTAATCTTATCT+GGG 0.512734 5_2:-25492094 None:intergenic
TGTTGTGGGGTCAAACTTGG+TGG 0.515244 5_2:-25494608 None:intergenic
TTATAGGTTTAGTAATCAGC+AGG 0.520440 5_2:-25494662 None:intergenic
TTCAAGGAAACAAGAGTTTG+AGG 0.523578 5_2:+25492130 Msa0765000:CDS
TGAAGGTATGCCACTTTCAA+AGG 0.534883 5_2:+25494538 Msa0765000:CDS
GTGAATATGGAAAATGGTGA+TGG 0.539312 5_2:+25492242 Msa0765000:CDS
GACTCTCAACATCACAACCT+TGG 0.539538 5_2:+25494448 Msa0765000:CDS
TGTGACACCGGGATATGAAA+AGG 0.540202 5_2:+25494505 Msa0765000:CDS
AATTTGGTGTGATGAGAGAA+AGG 0.543533 5_2:-25491856 None:intergenic
ATTCAACCTGGTTGGAAGAA+GGG 0.550194 5_2:+25494263 Msa0765000:CDS
TTTGTACCCTTCTTCCAACC+AGG 0.551829 5_2:-25494269 None:intergenic
TTATAAGGGTTGCAAAAGGA+AGG 0.556592 5_2:+25492334 Msa0765000:CDS
CGATTACTACAAAACACTAA+AGG 0.559196 5_2:+25492007 Msa0765000:CDS
TCCCTCTTGAATATAGGATG+TGG 0.559598 5_2:-25494368 None:intergenic
AGCTTTATAAGGGTTGCAAA+AGG 0.560966 5_2:+25492330 Msa0765000:CDS
AGATACATATTCAACCTGGT+TGG 0.563118 5_2:+25494255 Msa0765000:CDS
ATTGGATGATATTGTGACAC+CGG 0.564217 5_2:+25494493 Msa0765000:CDS
TGTGATATGTCTACCATCCA+AGG 0.580757 5_2:-25494465 None:intergenic
ATGGAGGTTGATGAAAGTGT+TGG 0.594938 5_2:+25492272 Msa0765000:CDS
CGGTAAATAAGAGATTATTG+TGG 0.607145 5_2:-25491801 None:intergenic
GACCACATCCTATATTCAAG+AGG 0.624354 5_2:+25494366 Msa0765000:CDS
TCAAAGGATCCAAGCAAGAG+AGG 0.627088 5_2:+25494554 Msa0765000:CDS
TTGGATGATATTGTGACACC+GGG 0.630525 5_2:+25494494 Msa0765000:CDS
CGTCAGATCTATGATCGCAA+TGG 0.644762 5_2:+25492206 Msa0765000:CDS
AACCCTTATAAAGCTCCTCA+AGG 0.648125 5_2:-25492322 None:intergenic
TTGAAGATACATATTCAACC+TGG 0.655040 5_2:+25494251 Msa0765000:CDS
TGATTTGGTATGTAGCCTTG+AGG 0.655134 5_2:+25492307 Msa0765000:CDS
CATCCTATATTCAAGAGGGA+CGG 0.657831 5_2:+25494371 Msa0765000:CDS
TGGTGATGGGAGTAATATGG+AGG 0.659763 5_2:+25492256 Msa0765000:CDS
TGAATATGGAAAATGGTGAT+GGG 0.659962 5_2:+25492243 Msa0765000:CDS
ACCACATCCTATATTCAAGA+GGG 0.666261 5_2:+25494367 Msa0765000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAACAAATTAATTAGAT+TGG - chr5_2:25492474-25492493 None:intergenic 10.0%
!!! AATCTAATTAATTTGTTATT+AGG + chr5_2:25492473-25492492 Msa0765000:intron 10.0%
!!! ATCTAATTAATTTGTTATTA+GGG + chr5_2:25492474-25492493 Msa0765000:intron 10.0%
!!! ATCAATCAAATCTTTTTTAA+GGG - chr5_2:25491750-25491769 None:intergenic 15.0%
!!! AATCAATCAAATCTTTTTTA+AGG - chr5_2:25491751-25491770 None:intergenic 15.0%
!! ATAACAATTTAGTTATGAAA+TGG + chr5_2:25492069-25492088 Msa0765000:CDS 15.0%
!! CAAAACAAAAACAAAAATTA+AGG - chr5_2:25492408-25492427 None:intergenic 15.0%
!!! TTTTGTTTTGTTTTGAAATT+CGG + chr5_2:25492418-25492437 Msa0765000:intron 15.0%
!!! CTTATTTTACATATGAATTT+TGG + chr5_2:25493605-25493624 Msa0765000:intron 15.0%
!!! ATTTCAATTGTAAACTTTTT+TGG + chr5_2:25493766-25493785 Msa0765000:intron 15.0%
!!! TATCTGTATTATGTATATTT+TGG + chr5_2:25493809-25493828 Msa0765000:intron 15.0%
!!! TTATGCAATTTTATTTCAAT+TGG - chr5_2:25494096-25494115 None:intergenic 15.0%
!!! CTTTTTTAAGGGAAATATTA+TGG - chr5_2:25491739-25491758 None:intergenic 20.0%
!!! AATTTTGGTGAATAGTAATT+TGG - chr5_2:25491875-25491894 None:intergenic 20.0%
!!! TTTGATGAAATTGAAGTTTT+TGG - chr5_2:25491958-25491977 None:intergenic 20.0%
!! TGAATTATTCAAATCTTCTA+GGG - chr5_2:25492048-25492067 None:intergenic 20.0%
!! ATGAATTATTCAAATCTTCT+AGG - chr5_2:25492049-25492068 None:intergenic 20.0%
!!! AAATTTTAAGAGAATTTCTG+AGG + chr5_2:25492154-25492173 Msa0765000:CDS 20.0%
!! AAAATCACGGATTTAAATAA+AGG - chr5_2:25492636-25492655 None:intergenic 20.0%
!! AAATCAAGTACTAAAAATCA+CGG - chr5_2:25492649-25492668 None:intergenic 20.0%
!!! TAGTACTTGATTTGATTTTT+AGG + chr5_2:25492656-25492675 Msa0765000:intron 20.0%
!!! TAGTTTTGAAAAGCTTATAT+AGG + chr5_2:25492813-25492832 Msa0765000:intron 20.0%
!! TGCATTAGTATTATGATTTA+GGG - chr5_2:25493077-25493096 None:intergenic 20.0%
!! ACCTAACAAATATATTATAC+TGG + chr5_2:25493408-25493427 Msa0765000:intron 20.0%
!! TCCAGTATAATATATTTGTT+AGG - chr5_2:25493412-25493431 None:intergenic 20.0%
!! TATTTGATACACACTTAATT+AGG + chr5_2:25493462-25493481 Msa0765000:intron 20.0%
!!! TTTTACATATGAATTTTGGA+TGG + chr5_2:25493609-25493628 Msa0765000:intron 20.0%
!!! TTACATCATATTTTTGTTGT+GGG - chr5_2:25494625-25494644 None:intergenic 20.0%
!! AACAAAAATATGATGTAAGA+AGG + chr5_2:25494627-25494646 Msa0765000:CDS 20.0%
!! TGATTACTAAACCTATAATT+TGG + chr5_2:25494667-25494686 Msa0765000:exon 20.0%
!! ATTCATCAACTTTTCTCAAA+TGG + chr5_2:25491977-25491996 Msa0765000:exon 25.0%
!! TTCATCAACTTTTCTCAAAT+GGG + chr5_2:25491978-25491997 Msa0765000:exon 25.0%
! AACAAAAATTAAGGAGAAAG+AGG - chr5_2:25492399-25492418 None:intergenic 25.0%
!!! GTTATTAGGGTTTTATTTAG+TGG + chr5_2:25492487-25492506 Msa0765000:intron 25.0%
!! AAACTGTAAGTTGTTTCAAT+AGG - chr5_2:25492939-25492958 None:intergenic 25.0%
!! AACATTTGTTACTTAAAGCT+TGG + chr5_2:25493027-25493046 Msa0765000:intron 25.0%
! GCATTAGTATTATGATTTAG+GGG - chr5_2:25493076-25493095 None:intergenic 25.0%
! CTGCATTAGTATTATGATTT+AGG - chr5_2:25493078-25493097 None:intergenic 25.0%
! ACAATGATATGTTACACAAA+AGG - chr5_2:25493102-25493121 None:intergenic 25.0%
!! TTTTGAATTCTGCAAATGAA+AGG + chr5_2:25493180-25493199 Msa0765000:intron 25.0%
!!! GTTTTTACTAGTTTTGAAAC+AGG + chr5_2:25493202-25493221 Msa0765000:intron 25.0%
!!! ATACATAAGTTGGTTTAACA+AGG + chr5_2:25494175-25494194 Msa0765000:intron 25.0%
!! AGGAGTTTTCTTTTCTAAAT+TGG + chr5_2:25494195-25494214 Msa0765000:intron 25.0%
!!! CTTTTCTAAATTGGTTTTAC+AGG + chr5_2:25494204-25494223 Msa0765000:intron 25.0%
! TAGACATATCACAGTTAAAT+TGG + chr5_2:25494475-25494494 Msa0765000:CDS 25.0%
!!! TACATCATATTTTTGTTGTG+GGG - chr5_2:25494624-25494643 None:intergenic 25.0%
!!! CTTACATCATATTTTTGTTG+TGG - chr5_2:25494626-25494645 None:intergenic 25.0%
!! CATTAGATTAGCCAAATTAT+AGG - chr5_2:25494681-25494700 None:intergenic 25.0%
TTCTAATCATCACTCTGTTT+CGG + chr5_2:25491769-25491788 Msa0765000:five_prime_UTR 30.0%
CGGTAAATAAGAGATTATTG+TGG - chr5_2:25491804-25491823 None:intergenic 30.0%
CGATTACTACAAAACACTAA+AGG + chr5_2:25492007-25492026 Msa0765000:CDS 30.0%
!! GGTATTGGTTAATCTTATCT+GGG - chr5_2:25492097-25492116 None:intergenic 30.0%
TGAATATGGAAAATGGTGAT+GGG + chr5_2:25492243-25492262 Msa0765000:CDS 30.0%
TTTATTTAGTGGTTGTGTTG+CGG + chr5_2:25492498-25492517 Msa0765000:intron 30.0%
GGTTGCATGTATAAGATAAT+TGG + chr5_2:25492677-25492696 Msa0765000:intron 30.0%
!!! CATTGCATGTTTGTTTTTGT+TGG + chr5_2:25492722-25492741 Msa0765000:intron 30.0%
!!! GTTTGTTTTTGTTGGCTATT+AGG + chr5_2:25492730-25492749 Msa0765000:intron 30.0%
TAAACACTTGTGCAAATGTT+TGG + chr5_2:25492850-25492869 Msa0765000:intron 30.0%
AAACACTTGTGCAAATGTTT+GGG + chr5_2:25492851-25492870 Msa0765000:intron 30.0%
! TTGTTACTTAAAGCTTGGTT+AGG + chr5_2:25493032-25493051 Msa0765000:intron 30.0%
!!! TTACTAGTTTTGAAACAGGT+TGG + chr5_2:25493206-25493225 Msa0765000:intron 30.0%
AAACTGTAAGTTGTTCCTAT+AGG - chr5_2:25493371-25493390 None:intergenic 30.0%
! TGCATTAGTATTTGGAGTTA+GGG - chr5_2:25493507-25493526 None:intergenic 30.0%
ACAGTGATATGTAACACAAA+TGG - chr5_2:25493532-25493551 None:intergenic 30.0%
! TGAATTTTGGATGGTTTACT+TGG + chr5_2:25493618-25493637 Msa0765000:intron 30.0%
!!! TGCTGTTATTATGCTACTTT+TGG + chr5_2:25493712-25493731 Msa0765000:intron 30.0%
ACATCTCGAATACTAAAGAA+AGG - chr5_2:25493905-25493924 None:intergenic 30.0%
TTGAAGATACATATTCAACC+TGG + chr5_2:25494251-25494270 Msa0765000:CDS 30.0%
! ACCATCTGATGTAATTTTTG+TGG + chr5_2:25494334-25494353 Msa0765000:CDS 30.0%
ACCACAAAAATTACATCAGA+TGG - chr5_2:25494338-25494357 None:intergenic 30.0%
! TTCCAGAAGTGATATCTTTT+CGG - chr5_2:25494414-25494433 None:intergenic 30.0%
TTATAGGTTTAGTAATCAGC+AGG - chr5_2:25494665-25494684 None:intergenic 30.0%
! CGTGAAAAGTGCAGAATTAT+CGG - chr5_2:25491824-25491843 None:intergenic 35.0%
!! AATTTGGTGTGATGAGAGAA+AGG - chr5_2:25491859-25491878 None:intergenic 35.0%
! GTCAAAGAGAGAGTGAATTT+TGG - chr5_2:25491890-25491909 None:intergenic 35.0%
!! GGGTATTGGTTAATCTTATC+TGG - chr5_2:25492098-25492117 None:intergenic 35.0%
! CAAACTCTTGTTTCCTTGAA+GGG - chr5_2:25492130-25492149 None:intergenic 35.0%
! TCAAACTCTTGTTTCCTTGA+AGG - chr5_2:25492131-25492150 None:intergenic 35.0%
TTCAAGGAAACAAGAGTTTG+AGG + chr5_2:25492130-25492149 Msa0765000:CDS 35.0%
TCAATATCCTCCTGTGAATA+TGG + chr5_2:25492229-25492248 Msa0765000:CDS 35.0%
! TCACCATTTTCCATATTCAC+AGG - chr5_2:25492242-25492261 None:intergenic 35.0%
GTGAATATGGAAAATGGTGA+TGG + chr5_2:25492242-25492261 Msa0765000:CDS 35.0%
!! AAATGGTGATGGGAGTAATA+TGG + chr5_2:25492253-25492272 Msa0765000:CDS 35.0%
! AGCTTTATAAGGGTTGCAAA+AGG + chr5_2:25492330-25492349 Msa0765000:CDS 35.0%
TTATAAGGGTTGCAAAAGGA+AGG + chr5_2:25492334-25492353 Msa0765000:CDS 35.0%
AAAGGAAGGTGAAAGTTGTA+AGG + chr5_2:25492348-25492367 Msa0765000:CDS 35.0%
TATAAGAACCGACTAATCTG+AGG + chr5_2:25492446-25492465 Msa0765000:intron 35.0%
ATAAGAACCGACTAATCTGA+GGG + chr5_2:25492447-25492466 Msa0765000:intron 35.0%
AAAATGAAGTGAAGCCGATA+AGG + chr5_2:25492547-25492566 Msa0765000:intron 35.0%
!!! TTATGATTTAGGGGTGCTTT+TGG - chr5_2:25493067-25493086 None:intergenic 35.0%
TAACCACTTGTGAAAATGTC+TGG + chr5_2:25493262-25493281 Msa0765000:intron 35.0%
TTGTTCCTATAGGCTATCAT+GGG - chr5_2:25493361-25493380 None:intergenic 35.0%
! GCATTAGTATTTGGAGTTAG+GGG - chr5_2:25493506-25493525 None:intergenic 35.0%
! GTGCATTAGTATTTGGAGTT+AGG - chr5_2:25493508-25493527 None:intergenic 35.0%
AAATGGCGTGCATTAGTATT+TGG - chr5_2:25493515-25493534 None:intergenic 35.0%
TCGAATACTAAAGAAAGGAG+TGG - chr5_2:25493900-25493919 None:intergenic 35.0%
TAGAATGTAACCACATGTGT+TGG + chr5_2:25493959-25493978 Msa0765000:intron 35.0%
CTGTGTAACATATGATTGAG+TGG + chr5_2:25494028-25494047 Msa0765000:intron 35.0%
TAACATATGATTGAGTGGCT+TGG + chr5_2:25494033-25494052 Msa0765000:intron 35.0%
GGCTTAGTGTAACAGTAAAT+AGG - chr5_2:25494075-25494094 None:intergenic 35.0%
TGTATCCAAGCAAAGTGAAA+AGG - chr5_2:25494160-25494179 None:intergenic 35.0%
CTTTGCTTGGATACATAAGT+TGG + chr5_2:25494165-25494184 Msa0765000:intron 35.0%
AGATACATATTCAACCTGGT+TGG + chr5_2:25494255-25494274 Msa0765000:CDS 35.0%
!!! GTACAAAAGTCACTTTTCCT+GGG + chr5_2:25494285-25494304 Msa0765000:CDS 35.0%
ACCACATCCTATATTCAAGA+GGG + chr5_2:25494367-25494386 Msa0765000:CDS 35.0%
ATTGGATGATATTGTGACAC+CGG + chr5_2:25494493-25494512 Msa0765000:CDS 35.0%
! AAGGGTTTCTTGAAGGGTAT+TGG - chr5_2:25492112-25492131 None:intergenic 40.0%
TCCTTGAAGGGTTTCTTGAA+GGG - chr5_2:25492118-25492137 None:intergenic 40.0%
TTCCTTGAAGGGTTTCTTGA+AGG - chr5_2:25492119-25492138 None:intergenic 40.0%
TCATAGATCTGACGCTTCTT+AGG - chr5_2:25492200-25492219 None:intergenic 40.0%
! CCATTTTCCATATTCACAGG+AGG - chr5_2:25492239-25492258 None:intergenic 40.0%
CCTCCTGTGAATATGGAAAA+TGG + chr5_2:25492236-25492255 Msa0765000:CDS 40.0%
!! ATGGAGGTTGATGAAAGTGT+TGG + chr5_2:25492272-25492291 Msa0765000:CDS 40.0%
TGGAGTTGTTGAGAGTGATT+TGG + chr5_2:25492292-25492311 Msa0765000:CDS 40.0%
!! TGATTTGGTATGTAGCCTTG+AGG + chr5_2:25492307-25492326 Msa0765000:CDS 40.0%
! TAGCCTTGAGGAGCTTTATA+AGG + chr5_2:25492319-25492338 Msa0765000:CDS 40.0%
! AGCCTTGAGGAGCTTTATAA+GGG + chr5_2:25492320-25492339 Msa0765000:CDS 40.0%
AACCCTTATAAAGCTCCTCA+AGG - chr5_2:25492325-25492344 None:intergenic 40.0%
AGGAATGTTCCTGATGAGTT+TGG + chr5_2:25492368-25492387 Msa0765000:CDS 40.0%
GGAATGTTCCTGATGAGTTT+GGG + chr5_2:25492369-25492388 Msa0765000:CDS 40.0%
TGTGATATTGCTGAGAATCG+CGG + chr5_2:25492523-25492542 Msa0765000:intron 40.0%
! AACCGCAATTGAAGCCTTAT+CGG - chr5_2:25492564-25492583 None:intergenic 40.0%
! TAAGGCTTCAATTGCGGTTT+TGG + chr5_2:25492565-25492584 Msa0765000:intron 40.0%
!!! AGTTTTGAAACAGGTTGGTC+TGG + chr5_2:25493211-25493230 Msa0765000:intron 40.0%
!!! GTTTTGAAACAGGTTGGTCT+GGG + chr5_2:25493212-25493231 Msa0765000:intron 40.0%
TTGGTCTGGGAAGCTTATTT+AGG + chr5_2:25493225-25493244 Msa0765000:intron 40.0%
! CTTCCAGACATTTTCACAAG+TGG - chr5_2:25493268-25493287 None:intergenic 40.0%
TGTTCCTATAGGCTATCATG+GGG - chr5_2:25493360-25493379 None:intergenic 40.0%
GTTGTTCCTATAGGCTATCA+TGG - chr5_2:25493362-25493381 None:intergenic 40.0%
ATGTGACAAAATGACAGCAC+AGG - chr5_2:25493668-25493687 None:intergenic 40.0%
ATACTAAAGAAAGGAGTGGC+TGG - chr5_2:25493896-25493915 None:intergenic 40.0%
GTTTCTTACACCAACACATG+TGG - chr5_2:25493972-25493991 None:intergenic 40.0%
! ACGTGTTTAGTCTGAAGTGT+CGG + chr5_2:25493996-25494015 Msa0765000:intron 40.0%
AAGCAAAGTGAAAAGGAAGG+AGG - chr5_2:25494153-25494172 None:intergenic 40.0%
! TCCTTCCTTTTCACTTTGCT+TGG + chr5_2:25494152-25494171 Msa0765000:intron 40.0%
TCCAAGCAAAGTGAAAAGGA+AGG - chr5_2:25494156-25494175 None:intergenic 40.0%
TATTCAACCTGGTTGGAAGA+AGG + chr5_2:25494262-25494281 Msa0765000:CDS 40.0%
ATTCAACCTGGTTGGAAGAA+GGG + chr5_2:25494263-25494282 Msa0765000:CDS 40.0%
!!! GGTACAAAAGTCACTTTTCC+TGG + chr5_2:25494284-25494303 Msa0765000:CDS 40.0%
!!! AAAGTCACTTTTCCTGGGAA+AGG + chr5_2:25494290-25494309 Msa0765000:CDS 40.0%
GACCACATCCTATATTCAAG+AGG + chr5_2:25494366-25494385 Msa0765000:CDS 40.0%
TCCCTCTTGAATATAGGATG+TGG - chr5_2:25494371-25494390 None:intergenic 40.0%
CATCCTATATTCAAGAGGGA+CGG + chr5_2:25494371-25494390 Msa0765000:CDS 40.0%
TTTCCGTCCCTCTTGAATAT+AGG - chr5_2:25494377-25494396 None:intergenic 40.0%
GACCGAAAAGATATCACTTC+TGG + chr5_2:25494409-25494428 Msa0765000:CDS 40.0%
TGTGATATGTCTACCATCCA+AGG - chr5_2:25494468-25494487 None:intergenic 40.0%
TTGGATGATATTGTGACACC+GGG + chr5_2:25494494-25494513 Msa0765000:CDS 40.0%
!! TGAAGGTATGCCACTTTCAA+AGG + chr5_2:25494538-25494557 Msa0765000:CDS 40.0%
! TTGCTTGGATCCTTTGAAAG+TGG - chr5_2:25494551-25494570 None:intergenic 40.0%
CTAAGATTTCCTCTCTTGCT+TGG - chr5_2:25494566-25494585 None:intergenic 40.0%
!! TTTTGTTGTGGGGTCAAACT+TGG - chr5_2:25494614-25494633 None:intergenic 40.0%
ACCCTTCAAGAAACCCTTCA+AGG + chr5_2:25492114-25492133 Msa0765000:CDS 45.0%
CGTCAGATCTATGATCGCAA+TGG + chr5_2:25492206-25492225 Msa0765000:CDS 45.0%
!! TGGTGATGGGAGTAATATGG+AGG + chr5_2:25492256-25492275 Msa0765000:CDS 45.0%
GAGGATTACCCAAACTCATC+AGG - chr5_2:25492380-25492399 None:intergenic 45.0%
! GATTGGTCCCTCAGATTAGT+CGG - chr5_2:25492457-25492476 None:intergenic 45.0%
GCGATTCTCAGCAATATCAC+AGG - chr5_2:25492524-25492543 None:intergenic 45.0%
AGCCGATAAGGCTTCAATTG+CGG + chr5_2:25492559-25492578 Msa0765000:intron 45.0%
ATCACCCCATGATAGCCTAT+AGG + chr5_2:25493353-25493372 Msa0765000:intron 45.0%
TTTGTACCCTTCTTCCAACC+AGG - chr5_2:25494272-25494291 None:intergenic 45.0%
GGAAGATAGTTTCCTTTCCC+AGG - chr5_2:25494305-25494324 None:intergenic 45.0%
GGGAAAGGAAACTATCTTCC+AGG + chr5_2:25494305-25494324 Msa0765000:CDS 45.0%
GGAAACTATCTTCCAGGATC+TGG + chr5_2:25494311-25494330 Msa0765000:CDS 45.0%
! TCACTTCTGGAAGCTCTTGT+TGG + chr5_2:25494422-25494441 Msa0765000:CDS 45.0%
GACTCTCAACATCACAACCT+TGG + chr5_2:25494448-25494467 Msa0765000:CDS 45.0%
CTCAACATCACAACCTTGGA+TGG + chr5_2:25494452-25494471 Msa0765000:CDS 45.0%
TGTGACACCGGGATATGAAA+AGG + chr5_2:25494505-25494524 Msa0765000:CDS 45.0%
TCAAAGGATCCAAGCAAGAG+AGG + chr5_2:25494554-25494573 Msa0765000:CDS 45.0%
TGACAGCACAGGCAACATCA+TGG - chr5_2:25493657-25493676 None:intergenic 50.0%
ACAGGCAACCAAAGGATGAG+GGG - chr5_2:25493873-25493892 None:intergenic 50.0%
GACAGGCAACCAAAGGATGA+GGG - chr5_2:25493874-25493893 None:intergenic 50.0%
AAAGAAAGGAGTGGCTGGAC+AGG - chr5_2:25493891-25493910 None:intergenic 50.0%
ACATCAGATGGTCCAGATCC+TGG - chr5_2:25494326-25494345 None:intergenic 50.0%
! GCGACGACCTTTTCATATCC+CGG - chr5_2:25494515-25494534 None:intergenic 50.0%
GAAAAGGTCGTCGCTGATGA+AGG + chr5_2:25494521-25494540 Msa0765000:CDS 50.0%
TGTTGTGGGGTCAAACTTGG+TGG - chr5_2:25494611-25494630 None:intergenic 50.0%
AGGGGCAGGCAGGTATAAGA+AGG - chr5_2:25493855-25493874 None:intergenic 55.0%
GGACAGGCAACCAAAGGATG+AGG - chr5_2:25493875-25493894 None:intergenic 55.0%
GCAACCAAAGGATGAGGGGC+AGG - chr5_2:25493869-25493888 None:intergenic 60.0%
GTGGCTGGACAGGCAACCAA+AGG - chr5_2:25493881-25493900 None:intergenic 60.0%
CCAAAGGATGAGGGGCAGGC+AGG - chr5_2:25493865-25493884 None:intergenic 65.0%
CCTGCCTGCCCCTCATCCTT+TGG + chr5_2:25493862-25493881 Msa0765000:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 25491727 25494797 25491727 ID=Msa0765000;Name=Msa0765000
chr5_2 mRNA 25491727 25494797 25491727 ID=Msa0765000-mRNA-1;Parent=Msa0765000;Name=Msa0765000-mRNA-1;_AED=0.04;_eAED=0.04;_QI=269|1|1|1|1|1|2|121|281
chr5_2 exon 25491727 25492390 25491727 ID=Msa0765000-mRNA-1:exon:10271;Parent=Msa0765000-mRNA-1
chr5_2 exon 25494226 25494797 25494226 ID=Msa0765000-mRNA-1:exon:10272;Parent=Msa0765000-mRNA-1
chr5_2 five_prime_UTR 25491727 25491995 25491727 ID=Msa0765000-mRNA-1:five_prime_utr;Parent=Msa0765000-mRNA-1
chr5_2 CDS 25491996 25492390 25491996 ID=Msa0765000-mRNA-1:cds;Parent=Msa0765000-mRNA-1
chr5_2 CDS 25494226 25494676 25494226 ID=Msa0765000-mRNA-1:cds;Parent=Msa0765000-mRNA-1
chr5_2 three_prime_UTR 25494677 25494797 25494677 ID=Msa0765000-mRNA-1:three_prime_utr;Parent=Msa0765000-mRNA-1
Gene Sequence

>Msa0765000

ATGGGTAATCACGATTACTACAAAACACTAAAGGTTAAGCGTGATGCAACCCTAGAAGATTTGAATAATTCATATAACAATTTAGTTATGAAATGGCACCCAGATAAGATTAACCAATACCCTTCAAGAAACCCTTCAAGGAAACAAGAGTTTGAGGCAAATTTTAAGAGAATTTCTGAGGCTTATGAAGTTCTTAGTGATCCTAAGAAGCGTCAGATCTATGATCGCAATGGTCAATATCCTCCTGTGAATATGGAAAATGGTGATGGGAGTAATATGGAGGTTGATGAAAGTGTTGGAGTTGTTGAGAGTGATTTGGTATGTAGCCTTGAGGAGCTTTATAAGGGTTGCAAAAGGAAGGTGAAAGTTGTAAGGAATGTTCCTGATGAGTTTGGGAAGTTGAAGTGTGAAGAAGAAATCTTGAAGATACATATTCAACCTGGTTGGAAGAAGGGTACAAAAGTCACTTTTCCTGGGAAAGGAAACTATCTTCCAGGATCTGGACCATCTGATGTAATTTTTGTGGTGAATGAGAGACCACATCCTATATTCAAGAGGGACGGAAAAGATTTAATAATGACCGAAAAGATATCACTTCTGGAAGCTCTTGTTGGTAAGACTCTCAACATCACAACCTTGGATGGTAGACATATCACAGTTAAATTGGATGATATTGTGACACCGGGATATGAAAAGGTCGTCGCTGATGAAGGTATGCCACTTTCAAAGGATCCAAGCAAGAGAGGAAATCTTAGAATAAAGTTTAATGTTATGTATCCACCAAGTTTGACCCCACAACAAAAATATGATGTAAGAAGGATTTTGAATGATCCTGCTGATTACTAA

Protein sequence

>Msa0765000

MGNHDYYKTLKVKRDATLEDLNNSYNNLVMKWHPDKINQYPSRNPSRKQEFEANFKRISEAYEVLSDPKKRQIYDRNGQYPPVNMENGDGSNMEVDESVGVVESDLVCSLEELYKGCKRKVKVVRNVPDEFGKLKCEEEILKIHIQPGWKKGTKVTFPGKGNYLPGSGPSDVIFVVNERPHPIFKRDGKDLIMTEKISLLEALVGKTLNITTLDGRHITVKLDDIVTPGYEKVVADEGMPLSKDPSKRGNLRIKFNVMYPPSLTPQQKYDVRRILNDPADY*