AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0464100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0464100 MtrunA17_Chr3g0114751 97.273 220 3 1 1 220 1 217 2.81e-159 439
Msa0464100 MtrunA17_Chr5g0423921 77.368 190 38 2 32 220 27 212 3.29e-104 299
Msa0464100 MtrunA17_Chr8g0380801 66.981 212 64 4 12 220 3 211 1.10e-93 273
Msa0464100 MtrunA17_Chr2g0277981 62.679 209 70 3 13 220 5 206 4.94e-92 268
Msa0464100 MtrunA17_Chr4g0042721 44.330 194 103 3 31 220 24 216 7.30e-58 182
Msa0464100 MtrunA17_Chr6g0453521 44.809 183 95 3 43 220 31 212 2.72e-55 175
Msa0464100 MtrunA17_Chr8g0380821 73.874 111 27 1 112 220 2 112 1.38e-53 167
Msa0464100 MtrunA17_Chr5g0417891 34.081 223 135 5 4 220 3 219 2.79e-43 145
Msa0464100 MtrunA17_Chr7g0217911 41.667 144 83 1 78 220 5 148 1.07e-38 130
Msa0464100 MtrunA17_Chr5g0417931 38.798 183 104 5 44 220 43 223 1.98e-33 119
Msa0464100 MtrunA17_Chr5g0417901 33.520 179 113 3 44 220 40 214 1.60e-28 106
Msa0464100 MtrunA17_Chr1g0204631 28.472 144 100 2 73 216 66 206 1.14e-14 70.1
Msa0464100 MtrunA17_Chr7g0260361 28.472 144 100 2 73 216 12 152 5.66e-14 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0464100 AT1G09580.1 62.927 205 72 2 18 220 15 217 1.89e-96 280
Msa0464100 AT1G57620.1 57.658 222 82 4 1 220 1 212 1.53e-90 265
Msa0464100 AT1G21900.1 62.981 208 73 3 16 220 10 216 4.80e-90 264
Msa0464100 AT3G10780.1 53.030 198 87 3 28 220 21 217 4.47e-67 206
Msa0464100 AT1G26690.1 40.385 208 115 4 17 220 12 214 3.59e-54 173
Msa0464100 AT1G14010.1 39.713 209 119 4 16 220 7 212 5.26e-52 167
Msa0464100 AT2G03290.1 41.327 196 111 2 29 220 18 213 8.19e-52 167
Msa0464100 AT1G69460.1 41.117 197 109 4 29 220 20 214 1.97e-51 166
Msa0464100 AT3G29070.1 38.860 193 113 3 32 220 34 225 3.31e-45 150
Msa0464100 AT2G03040.1 38.926 149 87 2 29 173 18 166 3.93e-34 120
Msa0464100 AT3G22845.1 26.776 183 129 3 36 216 28 207 1.40e-14 70.5

Find 87 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACATATATTCTGAATTT+AGG 0.195085 3_3:+63706661 Msa0464100:three_prime_UTR
TTGGGACTCTGTTGCTAAAA+AGG 0.253132 3_3:+63705629 Msa0464100:CDS
ATCGGCAACAACATAGTAAT+TGG 0.296460 3_3:-63704352 None:intergenic
GGTTGACTGTGGAATAAAAT+AGG 0.300784 3_3:-63704150 None:intergenic
GTCTCTTGGCGTATGCGTTT+CGG 0.305564 3_3:+63706445 Msa0464100:CDS
GTAGCTATGTGGCATGCTTT+TGG 0.326986 3_3:+63705538 Msa0464100:CDS
AGCAACAGAGTCCCAATCTT+TGG 0.327971 3_3:-63705622 None:intergenic
ATCTGTTATATTTAAAGAAC+AGG 0.333875 3_3:+63705831 Msa0464100:CDS
ATTAGTCTTGAATGGAAAAC+TGG 0.334614 3_3:+63705591 Msa0464100:CDS
ACAATTCGTGTTCCTGAACT+TGG 0.360761 3_3:-63704198 None:intergenic
CTGGAATCTCTGCCAAAGAT+TGG 0.361290 3_3:+63705610 Msa0464100:CDS
TGGTTAAGTATCCCCAGTTC+AGG 0.366565 3_3:+63704282 Msa0464100:CDS
GTTCTTCAATTAGTCTTGAA+TGG 0.366713 3_3:+63705583 Msa0464100:CDS
CTAAAACGACAACATGTGTT+TGG 0.367209 3_3:-63704329 None:intergenic
CACCGAGCCTCCCCAGGGTA+TGG 0.369293 3_3:-63704015 None:intergenic
CATGTTACTTATAGTAGAAT+AGG 0.377565 3_3:+63706742 Msa0464100:three_prime_UTR
AACCAAATGGCCTTGGTTTG+AGG 0.382119 3_3:-63704264 None:intergenic
TTGTACTCTTTCTTTCTCTC+GGG 0.388015 3_3:+63704095 Msa0464100:five_prime_UTR
TTTGTACTCTTTCTTTCTCT+CGG 0.389059 3_3:+63704094 Msa0464100:five_prime_UTR
ACCAAATGGCCTTGGTTTGA+GGG 0.400461 3_3:-63704263 None:intergenic
AAAGGCTTCAACCCAAGTTC+AGG 0.405800 3_3:+63704186 Msa0464100:CDS
TCCCTCAAACCAAGGCCATT+TGG 0.405823 3_3:+63704262 Msa0464100:CDS
ATCATTTGCATTAAACATGC+TGG 0.406313 3_3:-63706780 None:intergenic
TTGTGAAGATTATTTCCATA+TGG 0.419312 3_3:-63705465 None:intergenic
TGTATCTGAGACGCTACTTT+CGG 0.424544 3_3:+63706486 Msa0464100:CDS
CCACAGTCAACCATCGGTTA+TGG 0.438644 3_3:+63704161 Msa0464100:exon
GATACTTAACCAAATGGCCT+TGG 0.444311 3_3:-63704271 None:intergenic
CAACCATCGGTTATGGCAAA+AGG 0.447602 3_3:+63704168 Msa0464100:exon
TGGAATCTCTGCCAAAGATT+GGG 0.449888 3_3:+63705611 Msa0464100:CDS
GCCCATACCCTGGGGAGGCT+CGG 0.454555 3_3:+63704013 Msa0464100:five_prime_UTR
CACGCACTTAGTTCCTGAAC+TGG 0.458031 3_3:-63704295 None:intergenic
AGCCCTGGTCTTTGTACTTG+TGG 0.458914 3_3:+63704068 Msa0464100:five_prime_UTR
TGTTGTTGCCGATAATATCC+AGG 0.467878 3_3:+63704362 Msa0464100:CDS
CTATAGCACCGAGCCTCCCC+AGG 0.474490 3_3:-63704021 None:intergenic
AAAGACCAGGGCTTGACCCT+GGG 0.476675 3_3:-63704058 None:intergenic
CTTGAGCTAAGGAAACTTGA+TGG 0.478866 3_3:+63705785 Msa0464100:CDS
ACCGAGCCTCCCCAGGGTAT+GGG 0.483666 3_3:-63704014 None:intergenic
AGGAACTAAGTGCGTGTCGC+AGG 0.493989 3_3:+63704302 Msa0464100:CDS
CCCCAGGTGACATCTCCATA+TGG 0.495395 3_3:+63705450 Msa0464100:intron
CATACCTTGGCAGAAATAGT+AGG 0.498008 3_3:-63704396 None:intergenic
TTAAATATAACAGATTCTCA+TGG 0.503411 3_3:-63705823 None:intergenic
GAAGTAAGCGAAGCAACAAA+TGG 0.515284 3_3:+63706398 Msa0464100:CDS
TCAATTTGCATTTACAACTA+CGG 0.519360 3_3:+63705509 Msa0464100:CDS
TAGTAGGAAGTGGGTGACCC+TGG 0.521407 3_3:-63704380 None:intergenic
GATTACCTCTACAAGGGGTA+TGG 0.525321 3_3:+63706633 Msa0464100:three_prime_UTR
TACCTCTACAAGGGGTATGG+TGG 0.526535 3_3:+63706636 Msa0464100:three_prime_UTR
TGGGTGACCCTGGATATTAT+CGG 0.530206 3_3:-63704370 None:intergenic
CAATTCGTGTTCCTGAACTT+GGG 0.533317 3_3:-63704197 None:intergenic
CAAAGACCAGGGCTTGACCC+TGG 0.535927 3_3:-63704059 None:intergenic
TTGGCAGAAATAGTAGGAAG+TGG 0.539689 3_3:-63704390 None:intergenic
ACGCACTTAGTTCCTGAACT+GGG 0.540090 3_3:-63704294 None:intergenic
AAAACTTATAGAAAACAAGT+TGG 0.540899 3_3:-63706556 None:intergenic
ACTGGGGATACTTAACCAAA+TGG 0.541125 3_3:-63704277 None:intergenic
TGGTTCAGTATAATGTCTCT+TGG 0.541189 3_3:+63706431 Msa0464100:CDS
AGGGTGTTGAACTTGAGCTA+AGG 0.542132 3_3:+63705774 Msa0464100:intron
AGTAGAATAGGAAAAGCAAT+GGG 0.550580 3_3:+63706754 Msa0464100:three_prime_UTR
TTGAGGCCCATACCCTGGGG+AGG 0.553741 3_3:+63704008 Msa0464100:five_prime_UTR
ATATAACAGATTCTCATGGA+TGG 0.555960 3_3:-63705819 None:intergenic
TTTATTCCACAGTCAACCAT+CGG 0.564107 3_3:+63704155 Msa0464100:five_prime_UTR
GTTGGTGGATTACCTCTACA+AGG 0.568563 3_3:+63706626 Msa0464100:three_prime_UTR
TTGTAAATGCAAATTGACCT+TGG 0.569513 3_3:-63705503 None:intergenic
AACAATGAAAATGTTAGCCA+AGG 0.574278 3_3:+63705486 Msa0464100:CDS
ACCTCTACAAGGGGTATGGT+GGG 0.579054 3_3:+63706637 Msa0464100:three_prime_UTR
TAGTAGAATAGGAAAAGCAA+TGG 0.591569 3_3:+63706753 Msa0464100:three_prime_UTR
ACTTCCTACTATTTCTGCCA+AGG 0.592421 3_3:+63704392 Msa0464100:CDS
TGTACTCTTTCTTTCTCTCG+GGG 0.592451 3_3:+63704096 Msa0464100:five_prime_UTR
AAGACCAGGGCTTGACCCTG+GGG 0.602254 3_3:-63704057 None:intergenic
GACCAGGGCTTGACCCTGGG+GGG 0.605972 3_3:-63704055 None:intergenic
ACACCACAAGTACAAAGACC+AGG 0.608145 3_3:-63704071 None:intergenic
TATTAATCTCCCTCAAACCA+AGG 0.612415 3_3:+63704254 Msa0464100:CDS
GCATTTACAACTACGGAGAG+TGG 0.623113 3_3:+63705516 Msa0464100:CDS
TACGGAGAGTGGTAGCTATG+TGG 0.633734 3_3:+63705527 Msa0464100:CDS
CAGATGTTCAATTAACCACA+TGG 0.633972 3_3:-63706701 None:intergenic
TAGGATTGTCGAAAACAAAG+TGG 0.635214 3_3:-63704131 None:intergenic
TTGAGGGAGATTAATAAGCG+AGG 0.637007 3_3:-63704247 None:intergenic
TGGCAGAAATAGTAGGAAGT+GGG 0.638364 3_3:-63704389 None:intergenic
TCCCACCATACCCCTTGTAG+AGG 0.640141 3_3:-63706638 None:intergenic
GTTGTTGCCGATAATATCCA+GGG 0.640526 3_3:+63704363 Msa0464100:CDS
CAACAAATGGCAGAGTTGCG+TGG 0.644187 3_3:+63706411 Msa0464100:CDS
AGACCAGGGCTTGACCCTGG+GGG 0.651625 3_3:-63704056 None:intergenic
ATTCTACTATAAGTAACATG+AGG 0.660930 3_3:-63706739 None:intergenic
TATAGCACCGAGCCTCCCCA+GGG 0.672383 3_3:-63704020 None:intergenic
CGCACTTAGTTCCTGAACTG+GGG 0.674873 3_3:-63704293 None:intergenic
TTGGTGGATTACCTCTACAA+GGG 0.675678 3_3:+63706627 Msa0464100:three_prime_UTR
CACCACAAGTACAAAGACCA+GGG 0.681137 3_3:-63704070 None:intergenic
TGGTGGATTACCTCTACAAG+GGG 0.690786 3_3:+63706628 Msa0464100:three_prime_UTR
CCATAACCGATGGTTGACTG+TGG 0.695847 3_3:-63704161 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGCTTTATTATTTTTTCT+TGG + chr3_3:63704415-63704434 Msa0464100:intron 15.0%
!!! AAAAGTTCAAAACAATTTTA+TGG - chr3_3:63705993-63706012 None:intergenic 15.0%
!!! TTTTCATAAACTATATTAGA+TGG - chr3_3:63706023-63706042 None:intergenic 15.0%
!! AAATTTATTCAAAGAAAGTT+AGG + chr3_3:63706225-63706244 Msa0464100:intron 15.0%
!! AATTTATTCAAAGAAAGTTA+GGG + chr3_3:63706226-63706245 Msa0464100:intron 15.0%
!!! AGGCTATAATTATTTTTTTG+AGG + chr3_3:63703991-63704010 Msa0464100:five_prime_UTR 20.0%
!! AAAAATAATAAAGCATACCT+TGG - chr3_3:63704412-63704431 None:intergenic 20.0%
!!! TTTGATCTTTATGCTTTATT+TGG + chr3_3:63704475-63704494 Msa0464100:intron 20.0%
!!! ATTTAAAGTTTCTTCAACTT+AGG + chr3_3:63704524-63704543 Msa0464100:intron 20.0%
!!! GGATTATAAATTTGTTTATG+AGG + chr3_3:63704545-63704564 Msa0464100:intron 20.0%
!! AATTCATATGAGTTAAACTA+AGG + chr3_3:63704891-63704910 Msa0464100:intron 20.0%
!! AAAAAAAACTACTACATTAG+TGG - chr3_3:63704940-63704959 None:intergenic 20.0%
!! TAACTCAACTAATACATTTA+TGG + chr3_3:63705184-63705203 Msa0464100:intron 20.0%
!!! TAATACATTTATGGTTTGTT+TGG + chr3_3:63705193-63705212 Msa0464100:intron 20.0%
!!! AATACATTTATGGTTTGTTT+GGG + chr3_3:63705194-63705213 Msa0464100:intron 20.0%
!! TTAAATATAACAGATTCTCA+TGG - chr3_3:63705826-63705845 None:intergenic 20.0%
!! ATCTGTTATATTTAAAGAAC+AGG + chr3_3:63705831-63705850 Msa0464100:CDS 20.0%
!! CTATATCAAAAGATGAAATA+AGG - chr3_3:63706074-63706093 None:intergenic 20.0%
!! AATTAAGATGTTTATCCAAA+TGG + chr3_3:63706147-63706166 Msa0464100:intron 20.0%
!! ATTAAGATGTTTATCCAAAT+GGG + chr3_3:63706148-63706167 Msa0464100:intron 20.0%
!!! TGAGATCTTTTTATTAAGTT+GGG + chr3_3:63706196-63706215 Msa0464100:intron 20.0%
!!! ATGAATTATCTCAGTTATTT+TGG - chr3_3:63706314-63706333 None:intergenic 20.0%
!!! ATTTTTTTTGCACATTGTAT+AGG + chr3_3:63706360-63706379 Msa0464100:intron 20.0%
!!! TTTTTTTTGCACATTGTATA+GGG + chr3_3:63706361-63706380 Msa0464100:intron 20.0%
!! AAAACTTATAGAAAACAAGT+TGG - chr3_3:63706559-63706578 None:intergenic 20.0%
!!! AACTTGTTTTCTATAAGTTT+TGG + chr3_3:63706558-63706577 Msa0464100:three_prime_UTR 20.0%
!!! TAGTATTTTTCATGTATCAT+TGG + chr3_3:63706601-63706620 Msa0464100:three_prime_UTR 20.0%
!!! AGTATTTTTCATGTATCATT+GGG + chr3_3:63706602-63706621 Msa0464100:three_prime_UTR 20.0%
!! GTTACATATATTCTGAATTT+AGG + chr3_3:63706661-63706680 Msa0464100:three_prime_UTR 20.0%
!! AATTTGTTTATGAGGCTAAT+AGG + chr3_3:63704553-63704572 Msa0464100:intron 25.0%
! ATTTGTTTATGAGGCTAATA+GGG + chr3_3:63704554-63704573 Msa0464100:intron 25.0%
! ATTCAACGTCAATACAAATT+TGG - chr3_3:63704592-63704611 None:intergenic 25.0%
! TTGCAAAAGTTGTCTAAATT+TGG - chr3_3:63704749-63704768 None:intergenic 25.0%
!!! TTTTGCAACAACTTTTTAAG+TGG + chr3_3:63704761-63704780 Msa0464100:intron 25.0%
! AATATGTGGTTAATTACATC+CGG + chr3_3:63704797-63704816 Msa0464100:intron 25.0%
! GGATGGTAAATAGATATATT+AGG + chr3_3:63704821-63704840 Msa0464100:intron 25.0%
! ACAACACATGTAAGAAAATT+CGG - chr3_3:63705063-63705082 None:intergenic 25.0%
! TTGTGAAGATTATTTCCATA+TGG - chr3_3:63705468-63705487 None:intergenic 25.0%
! TCAATTTGCATTTACAACTA+CGG + chr3_3:63705509-63705528 Msa0464100:CDS 25.0%
! TTGCCTTTGTAATATCTATA+TGG + chr3_3:63705694-63705713 Msa0464100:intron 25.0%
! TGCCTTTGTAATATCTATAT+GGG + chr3_3:63705695-63705714 Msa0464100:intron 25.0%
! ATCCCATATAGATATTACAA+AGG - chr3_3:63705700-63705719 None:intergenic 25.0%
!! GTTTAATGACATAATCGTTT+TGG + chr3_3:63705740-63705759 Msa0464100:intron 25.0%
!!! GATGTTTGATTTCAGTTTTA+GGG + chr3_3:63705876-63705895 Msa0464100:intron 25.0%
! GAAAATAGCTTATAGCTAAT+AGG + chr3_3:63706038-63706057 Msa0464100:intron 25.0%
! TTAAGATGTTTATCCAAATG+GGG + chr3_3:63706149-63706168 Msa0464100:intron 25.0%
!! CTGAGATCTTTTTATTAAGT+TGG + chr3_3:63706195-63706214 Msa0464100:intron 25.0%
!! ATTTTACTTTCTTATAGCAC+TGG + chr3_3:63706527-63706546 Msa0464100:three_prime_UTR 25.0%
!! GTATTTTTCATGTATCATTG+GGG + chr3_3:63706603-63706622 Msa0464100:three_prime_UTR 25.0%
!! TATTTTTCATGTATCATTGG+GGG + chr3_3:63706604-63706623 Msa0464100:three_prime_UTR 25.0%
!!! TTTTGTTACTTTATTCCATG+TGG + chr3_3:63706686-63706705 Msa0464100:three_prime_UTR 25.0%
! ATTCTACTATAAGTAACATG+AGG - chr3_3:63706742-63706761 None:intergenic 25.0%
!! CATGTTACTTATAGTAGAAT+AGG + chr3_3:63706742-63706761 Msa0464100:three_prime_UTR 25.0%
TTTGTACTCTTTCTTTCTCT+CGG + chr3_3:63704094-63704113 Msa0464100:five_prime_UTR 30.0%
AATTTGGTCCTAAATTTGCA+GGG - chr3_3:63704648-63704667 None:intergenic 30.0%
AAATTTGGTCCTAAATTTGC+AGG - chr3_3:63704649-63704668 None:intergenic 30.0%
! GCAAATTTAGGACCAAATTT+AGG + chr3_3:63704649-63704668 Msa0464100:intron 30.0%
CCTAAATTTGGTCCTAAATT+TGG - chr3_3:63704652-63704671 None:intergenic 30.0%
! CCAAATTTAGGACCAAATTT+AGG + chr3_3:63704661-63704680 Msa0464100:intron 30.0%
TGTGAATTTGGTCCTAAATT+TGG - chr3_3:63704676-63704695 None:intergenic 30.0%
AATTTGGTTATCCTCATTGT+TGG - chr3_3:63704733-63704752 None:intergenic 30.0%
TATATCTATTTACCATCCAC+CGG - chr3_3:63704819-63704838 None:intergenic 30.0%
CAACACATGTAAGAAAATTC+GGG - chr3_3:63705062-63705081 None:intergenic 30.0%
!! ATCATTTTTCAGATACGTGT+CGG - chr3_3:63705119-63705138 None:intergenic 30.0%
AAAATGATACACCTAATCAC+AGG + chr3_3:63705131-63705150 Msa0464100:intron 30.0%
AACAATGAAAATGTTAGCCA+AGG + chr3_3:63705486-63705505 Msa0464100:CDS 30.0%
TTGTAAATGCAAATTGACCT+TGG - chr3_3:63705506-63705525 None:intergenic 30.0%
ATGAATAGCAAAAATCTAGC+AGG + chr3_3:63705561-63705580 Msa0464100:CDS 30.0%
!! GTTCTTCAATTAGTCTTGAA+TGG + chr3_3:63705583-63705602 Msa0464100:CDS 30.0%
!! ATTAGTCTTGAATGGAAAAC+TGG + chr3_3:63705591-63705610 Msa0464100:CDS 30.0%
TGCTAAAAAGGAAAAGATAG+AGG + chr3_3:63705641-63705660 Msa0464100:CDS 30.0%
!!! GACATAATCGTTTTGGAAAA+TGG + chr3_3:63705747-63705766 Msa0464100:intron 30.0%
!!! TCGTTTTGGAAAATGGTTTA+AGG + chr3_3:63705754-63705773 Msa0464100:intron 30.0%
!!! CGTTTTGGAAAATGGTTTAA+GGG + chr3_3:63705755-63705774 Msa0464100:intron 30.0%
ATATAACAGATTCTCATGGA+TGG - chr3_3:63705822-63705841 None:intergenic 30.0%
!! CGATGTTTGATTTCAGTTTT+AGG + chr3_3:63705875-63705894 Msa0464100:intron 30.0%
GTGAGCTTATCTACTAATAT+AGG + chr3_3:63705918-63705937 Msa0464100:intron 30.0%
ACAATTGCTTACGATATAAG+CGG + chr3_3:63706122-63706141 Msa0464100:intron 30.0%
TAGTAGAATAGGAAAAGCAA+TGG + chr3_3:63706753-63706772 Msa0464100:three_prime_UTR 30.0%
AGTAGAATAGGAAAAGCAAT+GGG + chr3_3:63706754-63706773 Msa0464100:three_prime_UTR 30.0%
TTGTACTCTTTCTTTCTCTC+GGG + chr3_3:63704095-63704114 Msa0464100:five_prime_UTR 35.0%
TAGGATTGTCGAAAACAAAG+TGG - chr3_3:63704134-63704153 None:intergenic 35.0%
GGTTGACTGTGGAATAAAAT+AGG - chr3_3:63704153-63704172 None:intergenic 35.0%
TTTATTCCACAGTCAACCAT+CGG + chr3_3:63704155-63704174 Msa0464100:five_prime_UTR 35.0%
TATTAATCTCCCTCAAACCA+AGG + chr3_3:63704254-63704273 Msa0464100:CDS 35.0%
CTAAAACGACAACATGTGTT+TGG - chr3_3:63704332-63704351 None:intergenic 35.0%
ATCGGCAACAACATAGTAAT+TGG - chr3_3:63704355-63704374 None:intergenic 35.0%
TGAACTGGTCAATGTGAATT+TGG - chr3_3:63704688-63704707 None:intergenic 35.0%
TCACATTGACCAGTTCAAAT+AGG + chr3_3:63704691-63704710 Msa0464100:intron 35.0%
GTTGACGCAGTTTAAATATG+TGG + chr3_3:63704783-63704802 Msa0464100:intron 35.0%
ACTCATATGAATTTCAGTCG+TGG - chr3_3:63704884-63704903 None:intergenic 35.0%
TGTGTTGTATGTGTATCGTA+TGG + chr3_3:63705075-63705094 Msa0464100:intron 35.0%
GTGTTGTATGTGTATCGTAT+GGG + chr3_3:63705076-63705095 Msa0464100:intron 35.0%
AATTTGACACTCCTGTGATT+AGG - chr3_3:63705145-63705164 None:intergenic 35.0%
!! ACATTTATGGTTTGTTTGGG+AGG + chr3_3:63705197-63705216 Msa0464100:intron 35.0%
!! CATTTATGGTTTGTTTGGGA+GGG + chr3_3:63705198-63705217 Msa0464100:intron 35.0%
!!! GGAAATTCATGAGTTTTGGA+GGG - chr3_3:63705388-63705407 None:intergenic 35.0%
TATGTGTCAACGATGATGAT+GGG + chr3_3:63706267-63706286 Msa0464100:intron 35.0%
TGGTTCAGTATAATGTCTCT+TGG + chr3_3:63706431-63706450 Msa0464100:CDS 35.0%
CAGATGTTCAATTAACCACA+TGG - chr3_3:63706704-63706723 None:intergenic 35.0%
TGTACTCTTTCTTTCTCTCG+GGG + chr3_3:63704096-63704115 Msa0464100:five_prime_UTR 40.0%
CAATTCGTGTTCCTGAACTT+GGG - chr3_3:63704200-63704219 None:intergenic 40.0%
ACAATTCGTGTTCCTGAACT+TGG - chr3_3:63704201-63704220 None:intergenic 40.0%
TTGAGGGAGATTAATAAGCG+AGG - chr3_3:63704250-63704269 None:intergenic 40.0%
GATACTTAACCAAATGGCCT+TGG - chr3_3:63704274-63704293 None:intergenic 40.0%
ACTGGGGATACTTAACCAAA+TGG - chr3_3:63704280-63704299 None:intergenic 40.0%
TGTTGTTGCCGATAATATCC+AGG + chr3_3:63704362-63704381 Msa0464100:CDS 40.0%
GTTGTTGCCGATAATATCCA+GGG + chr3_3:63704363-63704382 Msa0464100:CDS 40.0%
TGGCAGAAATAGTAGGAAGT+GGG - chr3_3:63704392-63704411 None:intergenic 40.0%
TTGGCAGAAATAGTAGGAAG+TGG - chr3_3:63704393-63704412 None:intergenic 40.0%
!! ACTTCCTACTATTTCTGCCA+AGG + chr3_3:63704392-63704411 Msa0464100:CDS 40.0%
CATACCTTGGCAGAAATAGT+AGG - chr3_3:63704399-63704418 None:intergenic 40.0%
CCAAGCTTTCCTATTTGAAC+TGG - chr3_3:63704703-63704722 None:intergenic 40.0%
CCAGTTCAAATAGGAAAGCT+TGG + chr3_3:63704700-63704719 Msa0464100:intron 40.0%
TTGGATACAGACCAACAATG+AGG + chr3_3:63704719-63704738 Msa0464100:intron 40.0%
ATGTGGTTAATTACATCCGG+TGG + chr3_3:63704800-63704819 Msa0464100:intron 40.0%
CGTGGTTAATGAAGTAACGT+TGG - chr3_3:63704866-63704885 None:intergenic 40.0%
AGGCTCATCTACGGTAAAAT+TGG - chr3_3:63704973-63704992 None:intergenic 40.0%
ACACTCTTCAAACACAGCAT+AGG - chr3_3:63704993-63705012 None:intergenic 40.0%
TATGTGTATCGTATGGGTGT+CGG + chr3_3:63705082-63705101 Msa0464100:intron 40.0%
!!! TCAGATACGTGTCGGTTTTT+GGG - chr3_3:63705111-63705130 None:intergenic 40.0%
!!! TTCAGATACGTGTCGGTTTT+TGG - chr3_3:63705112-63705131 None:intergenic 40.0%
! TTTGTTTGGGAGGGAGATTT+TGG + chr3_3:63705207-63705226 Msa0464100:intron 40.0%
!!! TTCATGAGTTTTGGAGGGAT+AGG - chr3_3:63705383-63705402 None:intergenic 40.0%
!! GGGAAATTCATGAGTTTTGG+AGG - chr3_3:63705389-63705408 None:intergenic 40.0%
! GGAGGGAAATTCATGAGTTT+TGG - chr3_3:63705392-63705411 None:intergenic 40.0%
TGGAATCTCTGCCAAAGATT+GGG + chr3_3:63705611-63705630 Msa0464100:CDS 40.0%
TTGGGACTCTGTTGCTAAAA+AGG + chr3_3:63705629-63705648 Msa0464100:CDS 40.0%
CTTGAGCTAAGGAAACTTGA+TGG + chr3_3:63705785-63705804 Msa0464100:CDS 40.0%
GTTTATCCAAATGGGGATCA+TGG + chr3_3:63706156-63706175 Msa0464100:intron 40.0%
TTACATCCATGATCCCCATT+TGG - chr3_3:63706165-63706184 None:intergenic 40.0%
CTATGTGTCAACGATGATGA+TGG + chr3_3:63706266-63706285 Msa0464100:intron 40.0%
GAAGTAAGCGAAGCAACAAA+TGG + chr3_3:63706398-63706417 Msa0464100:CDS 40.0%
! TGTATCTGAGACGCTACTTT+CGG + chr3_3:63706486-63706505 Msa0464100:CDS 40.0%
TTTCATGTATCATTGGGGGT+TGG + chr3_3:63706608-63706627 Msa0464100:three_prime_UTR 40.0%
!! TTGGTGGATTACCTCTACAA+GGG + chr3_3:63706627-63706646 Msa0464100:three_prime_UTR 40.0%
!!! TTTTTTTGAGGCCCATACCC+TGG + chr3_3:63704003-63704022 Msa0464100:five_prime_UTR 45.0%
!!! TTTTTTGAGGCCCATACCCT+GGG + chr3_3:63704004-63704023 Msa0464100:five_prime_UTR 45.0%
CACCACAAGTACAAAGACCA+GGG - chr3_3:63704073-63704092 None:intergenic 45.0%
ACACCACAAGTACAAAGACC+AGG - chr3_3:63704074-63704093 None:intergenic 45.0%
! CAACCATCGGTTATGGCAAA+AGG + chr3_3:63704168-63704187 Msa0464100:exon 45.0%
! AAGCCTTTTGCCATAACCGA+TGG - chr3_3:63704174-63704193 None:intergenic 45.0%
AAAGGCTTCAACCCAAGTTC+AGG + chr3_3:63704186-63704205 Msa0464100:CDS 45.0%
! ACCAAATGGCCTTGGTTTGA+GGG - chr3_3:63704266-63704285 None:intergenic 45.0%
! AACCAAATGGCCTTGGTTTG+AGG - chr3_3:63704267-63704286 None:intergenic 45.0%
TGGTTAAGTATCCCCAGTTC+AGG + chr3_3:63704282-63704301 Msa0464100:CDS 45.0%
ACGCACTTAGTTCCTGAACT+GGG - chr3_3:63704297-63704316 None:intergenic 45.0%
TGGGTGACCCTGGATATTAT+CGG - chr3_3:63704373-63704392 None:intergenic 45.0%
AAATTTGCAGGGCTTGTGGA+TGG - chr3_3:63704637-63704656 None:intergenic 45.0%
TCCACAAGCCCTGCAAATTT+AGG + chr3_3:63704637-63704656 Msa0464100:intron 45.0%
TCCTAAATTTGCAGGGCTTG+TGG - chr3_3:63704641-63704660 None:intergenic 45.0%
GGTTAATTACATCCGGTGGA+TGG + chr3_3:63704804-63704823 Msa0464100:intron 45.0%
TAAACTAAGGTCCTGCACGA+TGG + chr3_3:63704904-63704923 Msa0464100:intron 45.0%
ACACAGCATAGGCTCATCTA+CGG - chr3_3:63704982-63705001 None:intergenic 45.0%
TCCATATGGAGATGTCACCT+GGG - chr3_3:63705454-63705473 None:intergenic 45.0%
TTCCATATGGAGATGTCACC+TGG - chr3_3:63705455-63705474 None:intergenic 45.0%
GCATTTACAACTACGGAGAG+TGG + chr3_3:63705516-63705535 Msa0464100:CDS 45.0%
! GTAGCTATGTGGCATGCTTT+TGG + chr3_3:63705538-63705557 Msa0464100:CDS 45.0%
CTGGAATCTCTGCCAAAGAT+TGG + chr3_3:63705610-63705629 Msa0464100:CDS 45.0%
AGCAACAGAGTCCCAATCTT+TGG - chr3_3:63705625-63705644 None:intergenic 45.0%
!! AGGGTGTTGAACTTGAGCTA+AGG + chr3_3:63705774-63705793 Msa0464100:intron 45.0%
!! TGTCAACGATGATGATGGGT+GGG + chr3_3:63706271-63706290 Msa0464100:intron 45.0%
!! GTTGGTGGATTACCTCTACA+AGG + chr3_3:63706626-63706645 Msa0464100:three_prime_UTR 45.0%
!! TGGTGGATTACCTCTACAAG+GGG + chr3_3:63706628-63706647 Msa0464100:three_prime_UTR 45.0%
GATTACCTCTACAAGGGGTA+TGG + chr3_3:63706633-63706652 Msa0464100:three_prime_UTR 45.0%
!!! TTTTTGAGGCCCATACCCTG+GGG + chr3_3:63704005-63704024 Msa0464100:five_prime_UTR 50.0%
! AGCCCTGGTCTTTGTACTTG+TGG + chr3_3:63704068-63704087 Msa0464100:five_prime_UTR 50.0%
CCATAACCGATGGTTGACTG+TGG - chr3_3:63704164-63704183 None:intergenic 50.0%
! CCACAGTCAACCATCGGTTA+TGG + chr3_3:63704161-63704180 Msa0464100:exon 50.0%
TCCCTCAAACCAAGGCCATT+TGG + chr3_3:63704262-63704281 Msa0464100:CDS 50.0%
CGCACTTAGTTCCTGAACTG+GGG - chr3_3:63704296-63704315 None:intergenic 50.0%
CACGCACTTAGTTCCTGAAC+TGG - chr3_3:63704298-63704317 None:intergenic 50.0%
!! TTGGGAGGGAGATTTTGGAG+AGG + chr3_3:63705212-63705231 Msa0464100:intron 50.0%
! ATCACACCGAGGGTTTGCTT+GGG - chr3_3:63705413-63705432 None:intergenic 50.0%
! TATCACACCGAGGGTTTGCT+TGG - chr3_3:63705414-63705433 None:intergenic 50.0%
GCAGTCATGTATCACACCGA+GGG - chr3_3:63705423-63705442 None:intergenic 50.0%
AGATGTCACCTGGGGCAAAA+AGG - chr3_3:63705445-63705464 None:intergenic 50.0%
CCATATGGAGATGTCACCTG+GGG - chr3_3:63705453-63705472 None:intergenic 50.0%
TACGGAGAGTGGTAGCTATG+TGG + chr3_3:63705527-63705546 Msa0464100:CDS 50.0%
!! GTGTCAACGATGATGATGGG+TGG + chr3_3:63706270-63706289 Msa0464100:intron 50.0%
CAACAAATGGCAGAGTTGCG+TGG + chr3_3:63706411-63706430 Msa0464100:CDS 50.0%
GTCTCTTGGCGTATGCGTTT+CGG + chr3_3:63706445-63706464 Msa0464100:CDS 50.0%
CATGTATCATTGGGGGTTGG+TGG + chr3_3:63706611-63706630 Msa0464100:three_prime_UTR 50.0%
! TACCTCTACAAGGGGTATGG+TGG + chr3_3:63706636-63706655 Msa0464100:three_prime_UTR 50.0%
! ACCTCTACAAGGGGTATGGT+GGG + chr3_3:63706637-63706656 Msa0464100:three_prime_UTR 50.0%
AAAGACCAGGGCTTGACCCT+GGG - chr3_3:63704061-63704080 None:intergenic 55.0%
AGGAACTAAGTGCGTGTCGC+AGG + chr3_3:63704302-63704321 Msa0464100:CDS 55.0%
TAGTAGGAAGTGGGTGACCC+TGG - chr3_3:63704383-63704402 None:intergenic 55.0%
! GTGTTGATGTGCCATCGTGC+AGG - chr3_3:63704918-63704937 None:intergenic 55.0%
!! GGAGGGAGATTTTGGAGAGG+AGG + chr3_3:63705215-63705234 Msa0464100:intron 55.0%
TTCCCTCCCAAGCAAACCCT+CGG + chr3_3:63705404-63705423 Msa0464100:intron 55.0%
GGCAGTCATGTATCACACCG+AGG - chr3_3:63705424-63705443 None:intergenic 55.0%
! CATGACTGCCTTTTTGCCCC+AGG + chr3_3:63705434-63705453 Msa0464100:intron 55.0%
CCCCAGGTGACATCTCCATA+TGG + chr3_3:63705450-63705469 Msa0464100:intron 55.0%
TCCCACCATACCCCTTGTAG+AGG - chr3_3:63706641-63706660 None:intergenic 55.0%
! TATAGCACCGAGCCTCCCCA+GGG - chr3_3:63704023-63704042 None:intergenic 60.0%
AAGACCAGGGCTTGACCCTG+GGG - chr3_3:63704060-63704079 None:intergenic 60.0%
CAAAGACCAGGGCTTGACCC+TGG - chr3_3:63704062-63704081 None:intergenic 60.0%
! CACCGAGGGTTTGCTTGGGA+GGG - chr3_3:63705409-63705428 None:intergenic 60.0%
! ACACCGAGGGTTTGCTTGGG+AGG - chr3_3:63705410-63705429 None:intergenic 60.0%
TTGAGGCCCATACCCTGGGG+AGG + chr3_3:63704008-63704027 Msa0464100:five_prime_UTR 65.0%
ACCGAGCCTCCCCAGGGTAT+GGG - chr3_3:63704017-63704036 None:intergenic 65.0%
! CTATAGCACCGAGCCTCCCC+AGG - chr3_3:63704024-63704043 None:intergenic 65.0%
AGACCAGGGCTTGACCCTGG+GGG - chr3_3:63704059-63704078 None:intergenic 65.0%
GCCCATACCCTGGGGAGGCT+CGG + chr3_3:63704013-63704032 Msa0464100:five_prime_UTR 70.0%
CACCGAGCCTCCCCAGGGTA+TGG - chr3_3:63704018-63704037 None:intergenic 70.0%
TAGCGCTGCTTGCACCCCCC+AGG + chr3_3:63704041-63704060 Msa0464100:five_prime_UTR 70.0%
AGCGCTGCTTGCACCCCCCA+GGG + chr3_3:63704042-63704061 Msa0464100:five_prime_UTR 70.0%
GACCAGGGCTTGACCCTGGG+GGG - chr3_3:63704058-63704077 None:intergenic 70.0%
CACCCCCCAGGGTCAAGCCC+TGG + chr3_3:63704053-63704072 Msa0464100:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 63703980 63706797 63703980 ID=Msa0464100;Name=Msa0464100
chr3_3 mRNA 63703980 63706797 63703980 ID=Msa0464100-mRNA-1;Parent=Msa0464100;Name=Msa0464100-mRNA-1;_AED=0.06;_eAED=0.06;_QI=200|1|1|1|1|1|4|271|220
chr3_3 exon 63703980 63704413 63703980 ID=Msa0464100-mRNA-1:exon:13960;Parent=Msa0464100-mRNA-1
chr3_3 exon 63705456 63705662 63705456 ID=Msa0464100-mRNA-1:exon:13961;Parent=Msa0464100-mRNA-1
chr3_3 exon 63705776 63705852 63705776 ID=Msa0464100-mRNA-1:exon:13962;Parent=Msa0464100-mRNA-1
chr3_3 exon 63706382 63706797 63706382 ID=Msa0464100-mRNA-1:exon:13963;Parent=Msa0464100-mRNA-1
chr3_3 five_prime_UTR 63703980 63704179 63703980 ID=Msa0464100-mRNA-1:five_prime_utr;Parent=Msa0464100-mRNA-1
chr3_3 CDS 63704180 63704413 63704180 ID=Msa0464100-mRNA-1:cds;Parent=Msa0464100-mRNA-1
chr3_3 CDS 63705456 63705662 63705456 ID=Msa0464100-mRNA-1:cds;Parent=Msa0464100-mRNA-1
chr3_3 CDS 63705776 63705852 63705776 ID=Msa0464100-mRNA-1:cds;Parent=Msa0464100-mRNA-1
chr3_3 CDS 63706382 63706526 63706382 ID=Msa0464100-mRNA-1:cds;Parent=Msa0464100-mRNA-1
chr3_3 three_prime_UTR 63706527 63706797 63706527 ID=Msa0464100-mRNA-1:three_prime_utr;Parent=Msa0464100-mRNA-1
Gene Sequence

>Msa0464100

ATGGCAAAAGGCTTCAACCCAAGTTCAGGAACACGAATTGTTCTTAGTATTTTATTGTTATGCTTCACCTCGCTTATTAATCTCCCTCAAACCAAGGCCATTTGGTTAAGTATCCCCAGTTCAGGAACTAAGTGCGTGTCGCAGGATATCCAAACACATGTTGTCGTTTTAGCCAATTACTATGTTGTTGCCGATAATATCCAGGGTCACCCACTTCCTACTATTTCTGCCAAGGTGACATCTCCATATGGAAATAATCTTCACAACAATGAAAATGTTAGCCAAGGTCAATTTGCATTTACAACTACGGAGAGTGGTAGCTATGTGGCATGCTTTTGGATGAATAGCAAAAATCTAGCAGGTTCTTCAATTAGTCTTGAATGGAAAACTGGAATCTCTGCCAAAGATTGGGACTCTGTTGCTAAAAAGGAAAAGATAGAGGGTGTTGAACTTGAGCTAAGGAAACTTGATGGAGCTGTGCAAGCCATCCATGAGAATCTGTTATATTTAAAGAACAGGGAAGCAGAGATGAGAGAAGTAAGCGAAGCAACAAATGGCAGAGTTGCGTGGTTCAGTATAATGTCTCTTGGCGTATGCGTTTCGGTTTCAGTGTTGCAGCTGTTGTATCTGAGACGCTACTTTCGGAAGAAGAAGCTCATATAG

Protein sequence

>Msa0464100

MAKGFNPSSGTRIVLSILLLCFTSLINLPQTKAIWLSIPSSGTKCVSQDIQTHVVVLANYYVVADNIQGHPLPTISAKVTSPYGNNLHNNENVSQGQFAFTTTESGSYVACFWMNSKNLAGSSISLEWKTGISAKDWDSVAKKEKIEGVELELRKLDGAVQAIHENLLYLKNREAEMREVSEATNGRVAWFSIMSLGVCVSVSVLQLLYLRRYFRKKKLI*