Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766680 | sp|Q6NQ51|RRT4_ARATH | 70.502 | 478 | 133 | 1 | 9 | 486 | 27 | 496 | 0.0 | 726 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766680 | G7JWH1 | 96.559 | 494 | 13 | 2 | 1 | 490 | 1 | 494 | 0.0 | 993 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0726090 | Msa0766680 | 0.821806 | 3.319991e-53 | -8.615850e-47 |
| Msa0766680 | Msa0846240 | 0.821847 | 3.247478e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766680 | MtrunA17_Chr5g0417871 | 96.559 | 494 | 13 | 2 | 1 | 490 | 1 | 494 | 0.0 | 993 |
| Msa0766680 | MtrunA17_Chr4g0042711 | 79.461 | 482 | 96 | 2 | 9 | 490 | 28 | 506 | 0.0 | 817 |
| Msa0766680 | MtrunA17_Chr4g0061781 | 60.768 | 469 | 175 | 4 | 10 | 472 | 43 | 508 | 0.0 | 598 |
| Msa0766680 | MtrunA17_Chr2g0307971 | 60.593 | 472 | 174 | 4 | 3 | 472 | 46 | 507 | 0.0 | 597 |
| Msa0766680 | MtrunA17_Chr6g0455571 | 59.657 | 466 | 183 | 3 | 9 | 472 | 45 | 507 | 0.0 | 597 |
| Msa0766680 | MtrunA17_Chr5g0426591 | 48.905 | 411 | 198 | 4 | 75 | 473 | 101 | 511 | 1.26e-137 | 407 |
| Msa0766680 | MtrunA17_Chr4g0070551 | 47.739 | 398 | 201 | 5 | 81 | 476 | 228 | 620 | 3.20e-133 | 399 |
| Msa0766680 | MtrunA17_Chr4g0008451 | 47.912 | 407 | 200 | 6 | 76 | 475 | 222 | 623 | 6.54e-133 | 399 |
| Msa0766680 | MtrunA17_Chr3g0132371 | 47.418 | 426 | 205 | 6 | 68 | 477 | 120 | 542 | 1.61e-130 | 389 |
| Msa0766680 | MtrunA17_Chr5g0436321 | 46.231 | 398 | 207 | 5 | 80 | 475 | 160 | 552 | 6.88e-128 | 383 |
| Msa0766680 | MtrunA17_Chr3g0129981 | 47.188 | 409 | 191 | 7 | 84 | 477 | 117 | 515 | 3.52e-127 | 380 |
| Msa0766680 | MtrunA17_Chr5g0399311 | 43.099 | 413 | 212 | 9 | 77 | 483 | 120 | 515 | 2.15e-100 | 311 |
| Msa0766680 | MtrunA17_Chr4g0056061 | 41.606 | 411 | 217 | 8 | 77 | 481 | 104 | 497 | 9.91e-99 | 307 |
| Msa0766680 | MtrunA17_Chr5g0448581 | 44.697 | 396 | 197 | 9 | 84 | 474 | 122 | 500 | 1.77e-97 | 305 |
| Msa0766680 | MtrunA17_Chr3g0143821 | 42.929 | 396 | 211 | 8 | 82 | 475 | 112 | 494 | 1.87e-97 | 305 |
| Msa0766680 | MtrunA17_Chr1g0204121 | 38.263 | 426 | 229 | 10 | 70 | 478 | 77 | 485 | 2.18e-86 | 274 |
| Msa0766680 | MtrunA17_Chr3g0123521 | 38.636 | 396 | 217 | 9 | 71 | 448 | 141 | 528 | 2.24e-85 | 273 |
| Msa0766680 | MtrunA17_Chr5g0412251 | 37.442 | 430 | 220 | 10 | 81 | 474 | 86 | 502 | 3.86e-85 | 271 |
| Msa0766680 | MtrunA17_Chr3g0132951 | 36.199 | 442 | 230 | 11 | 68 | 473 | 90 | 515 | 2.19e-84 | 269 |
| Msa0766680 | MtrunA17_Chr4g0043911 | 34.783 | 414 | 247 | 10 | 81 | 480 | 150 | 554 | 4.03e-79 | 257 |
| Msa0766680 | MtrunA17_Chr5g0424241 | 36.077 | 413 | 232 | 10 | 82 | 473 | 158 | 559 | 3.87e-78 | 255 |
| Msa0766680 | MtrunA17_Chr4g0075311 | 37.955 | 440 | 220 | 11 | 78 | 473 | 161 | 591 | 1.62e-77 | 253 |
| Msa0766680 | MtrunA17_Chr2g0284071 | 35.520 | 442 | 236 | 8 | 75 | 475 | 209 | 642 | 5.72e-77 | 253 |
| Msa0766680 | MtrunA17_Chr1g0204141 | 36.300 | 427 | 239 | 10 | 70 | 478 | 77 | 488 | 3.35e-76 | 248 |
| Msa0766680 | MtrunA17_Chr1g0160781 | 34.230 | 409 | 242 | 9 | 81 | 473 | 149 | 546 | 4.63e-75 | 246 |
| Msa0766680 | MtrunA17_Chr7g0240241 | 91.129 | 124 | 7 | 1 | 240 | 359 | 1 | 124 | 7.34e-73 | 226 |
| Msa0766680 | MtrunA17_Chr3g0077321 | 34.474 | 409 | 245 | 11 | 81 | 475 | 147 | 546 | 1.23e-71 | 237 |
| Msa0766680 | MtrunA17_Chr4g0010511 | 36.139 | 404 | 233 | 9 | 84 | 479 | 236 | 622 | 1.23e-66 | 225 |
| Msa0766680 | MtrunA17_Chr3g0087291 | 34.518 | 394 | 245 | 6 | 84 | 475 | 176 | 558 | 2.16e-66 | 223 |
| Msa0766680 | MtrunA17_Chr4g0003561 | 33.424 | 368 | 217 | 9 | 81 | 441 | 75 | 421 | 3.78e-57 | 196 |
| Msa0766680 | MtrunA17_Chr1g0146501 | 31.715 | 309 | 183 | 9 | 78 | 363 | 82 | 385 | 1.54e-40 | 154 |
| Msa0766680 | MtrunA17_Chr3g0127811 | 29.888 | 358 | 212 | 10 | 24 | 363 | 9 | 345 | 1.30e-39 | 149 |
| Msa0766680 | MtrunA17_Chr7g0220381 | 30.693 | 303 | 191 | 6 | 70 | 356 | 87 | 386 | 2.13e-39 | 151 |
| Msa0766680 | MtrunA17_Chr4g0002361 | 26.888 | 331 | 193 | 14 | 81 | 400 | 86 | 378 | 2.85e-23 | 102 |
| Msa0766680 | MtrunA17_Chr2g0298881 | 25.000 | 344 | 201 | 10 | 81 | 410 | 35 | 335 | 3.77e-22 | 97.8 |
| Msa0766680 | MtrunA17_Chr1g0172911 | 50.000 | 68 | 10 | 1 | 79 | 122 | 19 | 86 | 4.45e-13 | 66.2 |
| Msa0766680 | MtrunA17_Chr1g0172911 | 59.184 | 49 | 20 | 0 | 193 | 241 | 80 | 128 | 3.97e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766680 | AT1G14020.1 | 70.502 | 478 | 133 | 1 | 9 | 486 | 27 | 496 | 0.0 | 726 |
| Msa0766680 | AT2G03280.1 | 68.172 | 465 | 133 | 4 | 9 | 472 | 30 | 480 | 0.0 | 671 |
| Msa0766680 | AT2G03280.2 | 64.431 | 492 | 133 | 5 | 9 | 472 | 30 | 507 | 0.0 | 657 |
| Msa0766680 | AT5G15740.1 | 58.925 | 465 | 186 | 3 | 9 | 472 | 38 | 498 | 0.0 | 580 |
| Msa0766680 | AT3G02250.1 | 57.849 | 465 | 191 | 3 | 9 | 472 | 38 | 498 | 0.0 | 568 |
| Msa0766680 | AT1G22460.1 | 46.925 | 439 | 219 | 6 | 45 | 474 | 125 | 558 | 4.48e-135 | 402 |
| Msa0766680 | AT2G37980.1 | 47.202 | 411 | 210 | 5 | 81 | 489 | 226 | 631 | 1.05e-133 | 401 |
| Msa0766680 | AT3G54100.1 | 46.489 | 413 | 209 | 6 | 76 | 481 | 212 | 619 | 1.84e-131 | 395 |
| Msa0766680 | AT5G35570.1 | 47.355 | 397 | 202 | 5 | 80 | 474 | 250 | 641 | 1.24e-128 | 388 |
| Msa0766680 | AT5G01100.1 | 47.990 | 398 | 199 | 5 | 81 | 474 | 216 | 609 | 1.38e-126 | 382 |
| Msa0766680 | AT5G64600.1 | 46.455 | 409 | 206 | 6 | 81 | 480 | 117 | 521 | 8.42e-125 | 374 |
| Msa0766680 | AT4G38390.1 | 44.557 | 395 | 205 | 7 | 81 | 473 | 123 | 505 | 6.71e-103 | 319 |
| Msa0766680 | AT1G20550.1 | 41.912 | 408 | 221 | 8 | 84 | 489 | 112 | 505 | 6.35e-102 | 317 |
| Msa0766680 | AT1G76270.1 | 43.909 | 394 | 205 | 8 | 84 | 475 | 109 | 488 | 6.52e-102 | 317 |
| Msa0766680 | AT4G16650.2 | 44.390 | 410 | 204 | 10 | 72 | 474 | 112 | 504 | 3.04e-94 | 296 |
| Msa0766680 | AT4G16650.1 | 44.390 | 410 | 204 | 10 | 72 | 474 | 112 | 504 | 3.04e-94 | 296 |
| Msa0766680 | AT4G24530.1 | 37.674 | 430 | 219 | 10 | 81 | 474 | 101 | 517 | 2.22e-86 | 275 |
| Msa0766680 | AT3G26370.1 | 37.626 | 396 | 221 | 8 | 71 | 448 | 149 | 536 | 3.31e-86 | 276 |
| Msa0766680 | AT1G04910.1 | 35.870 | 460 | 275 | 9 | 21 | 474 | 30 | 475 | 7.40e-85 | 271 |
| Msa0766680 | AT1G62330.1 | 35.682 | 440 | 227 | 10 | 82 | 475 | 222 | 651 | 1.05e-82 | 269 |
| Msa0766680 | AT5G65470.1 | 34.965 | 429 | 228 | 10 | 83 | 473 | 87 | 502 | 2.07e-82 | 264 |
| Msa0766680 | AT1G11990.1 | 39.706 | 408 | 220 | 11 | 82 | 473 | 191 | 588 | 6.34e-82 | 265 |
| Msa0766680 | AT1G38065.2 | 37.440 | 414 | 227 | 11 | 81 | 473 | 26 | 428 | 1.69e-81 | 260 |
| Msa0766680 | AT1G38065.1 | 37.440 | 414 | 227 | 11 | 81 | 473 | 36 | 438 | 2.15e-81 | 260 |
| Msa0766680 | AT1G38131.1 | 37.198 | 414 | 228 | 11 | 81 | 473 | 155 | 557 | 3.59e-80 | 261 |
| Msa0766680 | AT1G11990.2 | 36.629 | 445 | 219 | 11 | 82 | 473 | 176 | 610 | 5.55e-77 | 253 |
| Msa0766680 | AT1G29200.4 | 37.644 | 433 | 223 | 10 | 81 | 474 | 70 | 494 | 4.63e-76 | 247 |
| Msa0766680 | AT1G29200.1 | 37.644 | 433 | 223 | 10 | 81 | 474 | 70 | 494 | 4.63e-76 | 247 |
| Msa0766680 | AT1G14970.3 | 34.793 | 411 | 241 | 10 | 81 | 475 | 9 | 408 | 2.37e-75 | 243 |
| Msa0766680 | AT1G14970.2 | 34.793 | 411 | 241 | 10 | 81 | 475 | 35 | 434 | 3.69e-75 | 243 |
| Msa0766680 | AT1G35510.1 | 35.122 | 410 | 243 | 9 | 80 | 475 | 158 | 558 | 5.75e-75 | 246 |
| Msa0766680 | AT5G63390.1 | 37.845 | 399 | 228 | 8 | 84 | 476 | 167 | 551 | 7.75e-75 | 246 |
| Msa0766680 | AT1G29200.2 | 37.644 | 433 | 223 | 10 | 81 | 474 | 186 | 610 | 8.33e-75 | 247 |
| Msa0766680 | AT1G14970.1 | 34.793 | 411 | 241 | 10 | 81 | 475 | 155 | 554 | 4.98e-74 | 244 |
| Msa0766680 | AT1G29200.3 | 37.471 | 427 | 220 | 10 | 87 | 474 | 2 | 420 | 5.02e-74 | 240 |
| Msa0766680 | AT2G01480.1 | 34.804 | 408 | 239 | 10 | 81 | 472 | 154 | 550 | 2.24e-73 | 242 |
| Msa0766680 | AT2G01480.2 | 36.975 | 357 | 206 | 6 | 81 | 421 | 154 | 507 | 1.87e-72 | 239 |
| Msa0766680 | AT3G07900.1 | 34.596 | 396 | 247 | 5 | 84 | 477 | 191 | 576 | 9.32e-68 | 228 |
| Msa0766680 | AT2G44500.1 | 34.826 | 402 | 244 | 8 | 84 | 480 | 180 | 568 | 1.32e-66 | 224 |
| Msa0766680 | AT1G52630.1 | 33.867 | 375 | 220 | 10 | 74 | 442 | 67 | 419 | 6.89e-59 | 201 |
| Msa0766680 | AT1G52630.2 | 32.578 | 353 | 210 | 10 | 96 | 442 | 1 | 331 | 7.61e-50 | 174 |
| Msa0766680 | AT3G03810.2 | 34.304 | 309 | 186 | 6 | 70 | 363 | 78 | 384 | 1.71e-47 | 174 |
| Msa0766680 | AT3G03810.1 | 34.304 | 309 | 186 | 6 | 70 | 363 | 78 | 384 | 1.71e-47 | 174 |
| Msa0766680 | AT3G26370.2 | 38.636 | 220 | 122 | 6 | 71 | 280 | 149 | 365 | 1.35e-43 | 159 |
| Msa0766680 | AT3G30300.2 | 32.602 | 319 | 183 | 10 | 72 | 363 | 82 | 395 | 2.28e-42 | 160 |
| Msa0766680 | AT3G30300.1 | 32.602 | 319 | 183 | 10 | 72 | 363 | 82 | 395 | 2.28e-42 | 160 |
| Msa0766680 | AT2G44500.2 | 34.733 | 262 | 147 | 6 | 67 | 310 | 150 | 405 | 3.73e-36 | 139 |
| Msa0766680 | AT1G51630.1 | 26.087 | 322 | 188 | 12 | 80 | 390 | 90 | 372 | 6.85e-18 | 86.3 |
Find 119 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCAGATTCTGCCGCTTTA+TGG | 0.087587 | 5_2:-28653954 | Msa0766680:intron |
| ACTCCTCAAATTGAGAATTT+AGG | 0.103676 | 5_2:-28653819 | Msa0766680:CDS |
| TTTCAAGAATTGAGAGAAAA+AGG | 0.137295 | 5_2:+28656723 | None:intergenic |
| TGGCATTCACATTTCATTTC+TGG | 0.140172 | 5_2:-28656333 | Msa0766680:CDS |
| CTCCTCAAATTGAGAATTTA+GGG | 0.207048 | 5_2:-28653818 | Msa0766680:CDS |
| ATTGCAGCTGGTGAGATTTA+TGG | 0.210044 | 5_2:-28652824 | Msa0766680:CDS |
| ATTCGCTTCAAATTAAATTC+TGG | 0.238823 | 5_2:-28656645 | Msa0766680:five_prime_UTR |
| AGCTTGATAAGACATCATTT+TGG | 0.262663 | 5_2:-28655244 | Msa0766680:CDS |
| TTTGCAATTTCAGGTGAAAA+AGG | 0.267125 | 5_2:-28652565 | Msa0766680:intron |
| CCTACAAAATTCTTGTATAA+TGG | 0.268435 | 5_2:+28651912 | None:intergenic |
| AGGGTATACGTTTGAGGTTT+TGG | 0.275369 | 5_2:-28656425 | Msa0766680:CDS |
| GTTCTTCGAGCCTTAGGTTT+TGG | 0.287595 | 5_2:-28652866 | Msa0766680:CDS |
| GGATGCAAAGAAATAGAGTT+TGG | 0.295265 | 5_2:+28651933 | None:intergenic |
| GGCATTCACATTTCATTTCT+GGG | 0.303223 | 5_2:-28656332 | Msa0766680:CDS |
| CGCCCTAAATTCTCAATTTG+AGG | 0.307590 | 5_2:+28653816 | None:intergenic |
| TATTGTTCTTTGGATTTGTT+TGG | 0.312689 | 5_2:-28656382 | Msa0766680:CDS |
| AGAACTAAGGCCGCCTCTTC+TGG | 0.312939 | 5_2:+28652884 | None:intergenic |
| TGTGTTCAAGTATTGTTCTT+TGG | 0.316418 | 5_2:-28656392 | Msa0766680:CDS |
| TTCGCTTCAAATTAAATTCT+GGG | 0.322597 | 5_2:-28656644 | Msa0766680:five_prime_UTR |
| ATCATAATGGAACCCTAAAA+TGG | 0.324135 | 5_2:-28652160 | Msa0766680:CDS |
| CCATCTGCGATGAGTGATTC+TGG | 0.327493 | 5_2:+28652508 | None:intergenic |
| AGAAATTGTGATGAGTTTCT+AGG | 0.340861 | 5_2:-28652002 | Msa0766680:CDS |
| TTGATTCAAGCCACCATTGC+AGG | 0.359205 | 5_2:+28655415 | None:intergenic |
| CAAGTTCATGAAAAGAGAAT+TGG | 0.362522 | 5_2:-28652113 | Msa0766680:CDS |
| TAGAAATAGTCCTCCTCCTT+TGG | 0.381323 | 5_2:+28652056 | None:intergenic |
| ACCTTTATCCCTACTTATGA+TGG | 0.388352 | 5_2:-28652450 | Msa0766680:CDS |
| AGCTAACAGGAGGCATCTCC+AGG | 0.388940 | 5_2:+28655010 | None:intergenic |
| GCCTTAGTTCTTCGAGCCTT+AGG | 0.411617 | 5_2:-28652872 | Msa0766680:CDS |
| TGTTGACAAACTCACAAGTT+GGG | 0.416079 | 5_2:+28652763 | None:intergenic |
| ATGGACATGTTGGCTTTCTC+AGG | 0.416770 | 5_2:-28653732 | Msa0766680:CDS |
| CTCATCGCAGATGGCCGCCT+TGG | 0.420168 | 5_2:-28652499 | Msa0766680:CDS |
| TTCATTTCTGGGATCACTAC+TGG | 0.425754 | 5_2:-28656321 | Msa0766680:CDS |
| GGCTTTCTCAGGTTGTACTC+AGG | 0.430358 | 5_2:-28653721 | Msa0766680:CDS |
| GATGCAAAGAAATAGAGTTT+GGG | 0.433046 | 5_2:+28651934 | None:intergenic |
| GAGGCAATGAGGATAAGAAA+TGG | 0.442208 | 5_2:-28656460 | Msa0766680:exon |
| CCCATCATAAGTAGGGATAA+AGG | 0.444424 | 5_2:+28652449 | None:intergenic |
| GATCAGAGGGTATACGTTTG+AGG | 0.452447 | 5_2:-28656431 | Msa0766680:CDS |
| TCACCAGCTGCAATATATAT+CGG | 0.453493 | 5_2:+28652833 | None:intergenic |
| ATTTAGGGCGAAAATTGATT+CGG | 0.453678 | 5_2:-28653803 | Msa0766680:CDS |
| GAAATAAAAGAATGTAGTTA+CGG | 0.455310 | 5_2:+28656759 | None:intergenic |
| TAGTGACAGTGAGTGAACTA+TGG | 0.456536 | 5_2:-28656353 | Msa0766680:CDS |
| GCTTTCTCAGGTTGTACTCA+GGG | 0.467938 | 5_2:-28653720 | Msa0766680:CDS |
| CTTGGAGGAAGAAAAGTAAT+CGG | 0.481816 | 5_2:+28656234 | None:intergenic |
| TTTCTAAGAGTTTCCTGCAA+TGG | 0.482508 | 5_2:-28655428 | Msa0766680:CDS |
| TTGGTTGATATGCATCATAA+TGG | 0.483990 | 5_2:-28652173 | Msa0766680:CDS |
| AGAAATGGAGGTTAGATCAG+AGG | 0.484479 | 5_2:-28656445 | Msa0766680:exon |
| ACCTAAGGCTCGAAGAACTA+AGG | 0.487906 | 5_2:+28652871 | None:intergenic |
| TAATTTGAAGCGAATTAATG+TGG | 0.488225 | 5_2:+28656653 | None:intergenic |
| AATTCAGGTATGCATTCCCT+TGG | 0.488348 | 5_2:-28652967 | Msa0766680:intron |
| TGGAGATGCCTCCTGTTAGC+TGG | 0.488439 | 5_2:-28655008 | Msa0766680:CDS |
| CTAAGAGTTTCCTGCAATGG+TGG | 0.489996 | 5_2:-28655425 | Msa0766680:CDS |
| TCAGGTATGCATTCCCTTGG+TGG | 0.491881 | 5_2:-28652964 | Msa0766680:intron |
| CTAAGATGCAGTGCCACAAA+AGG | 0.492255 | 5_2:+28653762 | None:intergenic |
| ACAGGAAATTATACAAGTAA+TGG | 0.492528 | 5_2:-28655452 | Msa0766680:intron |
| GCCATGTTCCCATCATAAGT+AGG | 0.492805 | 5_2:+28652441 | None:intergenic |
| AATGATGTCTTATCAAGCTC+TGG | 0.501078 | 5_2:+28655248 | None:intergenic |
| AGGAGATAATTTCTGAAGAG+AGG | 0.503455 | 5_2:-28652934 | Msa0766680:CDS |
| TAGATATGAGATGGACATGT+TGG | 0.506081 | 5_2:-28653742 | Msa0766680:CDS |
| CCATGTTCCCATCATAAGTA+GGG | 0.511468 | 5_2:+28652442 | None:intergenic |
| CTTCAAATTAAATTCTGGGT+CGG | 0.511953 | 5_2:-28656640 | Msa0766680:five_prime_UTR |
| AGAGAAGAAGAAGATGAAAG+AGG | 0.515269 | 5_2:+28656792 | None:intergenic |
| GAAATGGAGGTTAGATCAGA+GGG | 0.517232 | 5_2:-28656444 | Msa0766680:CDS |
| ATTCCCTTGGTGGAGAGAAA+AGG | 0.524582 | 5_2:-28652954 | Msa0766680:CDS |
| GCCGCCTCTTCTGGTGTCAA+AGG | 0.536521 | 5_2:+28652893 | None:intergenic |
| GATTCGGATGCTTCACGAGA+AGG | 0.536968 | 5_2:-28653787 | Msa0766680:CDS |
| CCTTTATCCCTACTTATGAT+GGG | 0.537062 | 5_2:-28652449 | Msa0766680:CDS |
| AGTAGGGATAAAGGTGTCAC+TGG | 0.538681 | 5_2:+28652458 | None:intergenic |
| AATTTGAAGCGAATTAATGT+GGG | 0.543290 | 5_2:+28656654 | None:intergenic |
| TTCTGAAGAGAGGAGATCAC+AGG | 0.544928 | 5_2:-28652924 | Msa0766680:CDS |
| CCACTGAGGCTTGCAAAACA+TGG | 0.551920 | 5_2:-28651841 | Msa0766680:three_prime_UTR |
| CCCTACTTATGATGGGAACA+TGG | 0.557915 | 5_2:-28652442 | Msa0766680:CDS |
| CTGAGTTTCTGTAGATCAAG+TGG | 0.559172 | 5_2:+28653873 | None:intergenic |
| ACCTTGTGCTTTCCATAAAG+CGG | 0.559211 | 5_2:+28653942 | None:intergenic |
| ATTCGGATGCTTCACGAGAA+GGG | 0.561013 | 5_2:-28653786 | Msa0766680:CDS |
| CCGAGGAACTCAAAAGATTG+AGG | 0.570538 | 5_2:-28653680 | Msa0766680:intron |
| CCAGAATCACTCATCGCAGA+TGG | 0.574783 | 5_2:-28652508 | Msa0766680:CDS |
| TAATTAATAAAGGTAAATGA+AGG | 0.577646 | 5_2:+28651818 | None:intergenic |
| TGGGAACATGGCAAAACTTG+TGG | 0.580054 | 5_2:-28652430 | Msa0766680:CDS |
| CACTTGATCTACAGAAACTC+AGG | 0.581030 | 5_2:-28653872 | Msa0766680:CDS |
| TACTGAAACCATAAAATCCA+AGG | 0.582440 | 5_2:+28652482 | None:intergenic |
| ACACCGATATATATTGCAGC+TGG | 0.586158 | 5_2:-28652836 | Msa0766680:CDS |
| TCCTTTGACACCAGAAGAGG+CGG | 0.587100 | 5_2:-28652894 | Msa0766680:CDS |
| AGAGAATTGGACAGCCAACT+CGG | 0.589262 | 5_2:-28652100 | Msa0766680:CDS |
| GACGCACGTCTAGCAAATAA+CGG | 0.591633 | 5_2:-28653900 | Msa0766680:CDS |
| CAAGTATAGTATGAGTTGAG+AGG | 0.595061 | 5_2:-28651963 | Msa0766680:exon |
| GCAATGAGGATAAGAAATGG+AGG | 0.598407 | 5_2:-28656457 | Msa0766680:exon |
| TATAATCGAAAGACCAAAGG+AGG | 0.603229 | 5_2:-28652069 | Msa0766680:CDS |
| TGTCTCCCTACCAAAACCTA+AGG | 0.604346 | 5_2:+28652856 | None:intergenic |
| AGATTTATGGCGGTGAACGT+AGG | 0.606142 | 5_2:-28652811 | Msa0766680:CDS |
| AAATGGCACGAGTTTGCTGA+TGG | 0.607123 | 5_2:-28652143 | Msa0766680:CDS |
| TCCTAAACAAAATAATGTCG+TGG | 0.607462 | 5_2:-28656271 | Msa0766680:CDS |
| AATCGAAAGACCAAAGGAGG+AGG | 0.607935 | 5_2:-28652066 | Msa0766680:CDS |
| AACTTGTGGAAGGCCATCGA+AGG | 0.608718 | 5_2:-28652416 | Msa0766680:intron |
| AACATGGCAAAACTTGTGGA+AGG | 0.609196 | 5_2:-28652426 | Msa0766680:CDS |
| ACATAGACACTCGTGAGGGT+TGG | 0.612994 | 5_2:+28652031 | None:intergenic |
| GTTGACAAACTCACAAGTTG+GGG | 0.614088 | 5_2:+28652764 | None:intergenic |
| ATGTCCTTTGACACCAGAAG+AGG | 0.616187 | 5_2:-28652897 | Msa0766680:CDS |
| TTGCTCAGAGAAAGAAGCCG+AGG | 0.622924 | 5_2:-28653697 | Msa0766680:CDS |
| GGAAGAAAAGTAATCGGAGG+CGG | 0.623913 | 5_2:+28656240 | None:intergenic |
| CTTGAATCAAATGCGTGCTG+CGG | 0.623967 | 5_2:-28655402 | Msa0766680:intron |
| TCATTCGACCAGCTAACAGG+AGG | 0.632562 | 5_2:+28655000 | None:intergenic |
| ACTGCATCTTAGATATGAGA+TGG | 0.633287 | 5_2:-28653751 | Msa0766680:CDS |
| GGGTAAATACATACCTTCGA+TGG | 0.636072 | 5_2:+28652403 | None:intergenic |
| CCCTCACGAGTGTCTATGTG+AGG | 0.640114 | 5_2:-28652027 | Msa0766680:CDS |
| AGTTATAATCGAAAGACCAA+AGG | 0.642463 | 5_2:-28652072 | Msa0766680:CDS |
| TAAATATGGATATTCTACCC+TGG | 0.644817 | 5_2:-28655028 | Msa0766680:CDS |
| GCCGCTTTATGGAAAGCACA+AGG | 0.648292 | 5_2:-28653943 | Msa0766680:CDS |
| GTTTCAATGAAGAGGCAATG+AGG | 0.648573 | 5_2:-28656471 | Msa0766680:five_prime_UTR |
| AGGAAATATTTGTTCCACTG+AGG | 0.653180 | 5_2:-28651855 | Msa0766680:three_prime_UTR |
| TGAGTTTCTGTAGATCAAGT+GGG | 0.659206 | 5_2:+28653874 | None:intergenic |
| TCCTCACATAGACACTCGTG+AGG | 0.666757 | 5_2:+28652026 | None:intergenic |
| CCTCACATAGACACTCGTGA+GGG | 0.677641 | 5_2:+28652027 | None:intergenic |
| GCTAACAGGAGGCATCTCCA+GGG | 0.682429 | 5_2:+28655011 | None:intergenic |
| CAGGTGTCGTGTCAATTACG+AGG | 0.683646 | 5_2:-28653853 | Msa0766680:CDS |
| TCTGAAGAGAGGAGATCACA+GGG | 0.690255 | 5_2:-28652923 | Msa0766680:CDS |
| GGAGGAAGAAAAGTAATCGG+AGG | 0.701615 | 5_2:+28656237 | None:intergenic |
| GCAGCTGGTGAGATTTATGG+CGG | 0.732613 | 5_2:-28652821 | Msa0766680:CDS |
| GGTATTTCAGATATGTGACA+TGG | 0.740956 | 5_2:-28655309 | Msa0766680:intron |
| TGAAACCATAAAATCCAAGG+CGG | 0.765862 | 5_2:+28652485 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTATTTAGAGATATTA+AGG | - | chr5_2:28655274-28655293 | Msa0766680:CDS | 10.0% |
| !!! | GTTCAAAATCAATTTTTTTT+TGG | + | chr5_2:28652052-28652071 | None:intergenic | 15.0% |
| !! | GATCAATTAATTTATATCAA+AGG | + | chr5_2:28652597-28652616 | None:intergenic | 15.0% |
| !! | ATAAATCAATGTTCAATAAA+AGG | - | chr5_2:28652991-28653010 | Msa0766680:intron | 15.0% |
| !! | TAAATCAATGTTCAATAAAA+GGG | - | chr5_2:28652992-28653011 | Msa0766680:intron | 15.0% |
| !!! | AAACAGATAAATTTTAGAAT+AGG | + | chr5_2:28653363-28653382 | None:intergenic | 15.0% |
| !! | ATTGAAAAATTAACAATTTG+GGG | + | chr5_2:28653908-28653927 | None:intergenic | 15.0% |
| !! | CATTGAAAAATTAACAATTT+GGG | + | chr5_2:28653909-28653928 | None:intergenic | 15.0% |
| !! | TGGAATAAAATAGAATTATA+GGG | - | chr5_2:28654082-28654101 | Msa0766680:intron | 15.0% |
| !! | AAAGGGAAAAAAAAAAAAAA+AGG | + | chr5_2:28654319-28654338 | None:intergenic | 15.0% |
| !! | ATGAAGAAATTTATAGTTAT+GGG | - | chr5_2:28654551-28654570 | Msa0766680:intron | 15.0% |
| !! | AAATATCATTTACTAATATG+AGG | + | chr5_2:28655190-28655209 | None:intergenic | 15.0% |
| !! | AATACTAAAAACACAATAAA+TGG | + | chr5_2:28655524-28655543 | None:intergenic | 15.0% |
| !! | TAATTAATAAAGGTAAATGA+AGG | + | chr5_2:28656915-28656934 | None:intergenic | 15.0% |
| !!! | GTATAATGCAATTTTCTTTT+TGG | + | chr5_2:28651882-28651901 | None:intergenic | 20.0% |
| !! | GAAATAAAAGAATGTAGTTA+CGG | + | chr5_2:28651974-28651993 | None:intergenic | 20.0% |
| !! | AAAACATATCTGATACAAAA+AGG | + | chr5_2:28652547-28652566 | None:intergenic | 20.0% |
| !!! | GTTGGTAAATTTTGTTTTTT+TGG | - | chr5_2:28652720-28652739 | Msa0766680:intron | 20.0% |
| !!! | TTTTATTTTCTCACTCATTT+TGG | - | chr5_2:28653224-28653243 | Msa0766680:intron | 20.0% |
| !!! | TATTTACTGCTAAACTTTTT+AGG | + | chr5_2:28653688-28653707 | None:intergenic | 20.0% |
| !! | AAAAAGTTTAGCAGTAAATA+TGG | - | chr5_2:28653688-28653707 | Msa0766680:CDS | 20.0% |
| !!! | TTCTAACTATTTGCTATTTA+AGG | - | chr5_2:28653821-28653840 | Msa0766680:CDS | 20.0% |
| !! | GCATTGAAAAATTAACAATT+TGG | + | chr5_2:28653910-28653929 | None:intergenic | 20.0% |
| !! | GTGGAATAAAATAGAATTAT+AGG | - | chr5_2:28654081-28654100 | Msa0766680:intron | 20.0% |
| !! | AGTCAATTATATGTTTGAAA+GGG | + | chr5_2:28654336-28654355 | None:intergenic | 20.0% |
| !! | AAGTCAATTATATGTTTGAA+AGG | + | chr5_2:28654337-28654356 | None:intergenic | 20.0% |
| !! | CATGAAGAAATTTATAGTTA+TGG | - | chr5_2:28654550-28654569 | Msa0766680:intron | 20.0% |
| !! | AAAAACCAAGTTTACTAAAT+AGG | + | chr5_2:28654597-28654616 | None:intergenic | 20.0% |
| !!! | GTATTTTTATGTTTCATGTT+TGG | - | chr5_2:28655072-28655091 | Msa0766680:CDS | 20.0% |
| !!! | CAAGATTGTTTTTCTAAAAT+CGG | + | chr5_2:28656513-28656532 | None:intergenic | 20.0% |
| !!! | AATTTTGTGTCTTTTTCGAT+TGG | + | chr5_2:28651835-28651854 | None:intergenic | 25.0% |
| !! | AAAAAGACACAAAATTTTCC+CGG | - | chr5_2:28651839-28651858 | Msa0766680:three_prime_UTR | 25.0% |
| !! | GTTTTCTTCTTTTTTTTTCC+GGG | + | chr5_2:28651860-28651879 | None:intergenic | 25.0% |
| !! | GGTTTTCTTCTTTTTTTTTC+CGG | + | chr5_2:28651861-28651880 | None:intergenic | 25.0% |
| ! | TTCAAGAATTGAGAGAAAAA+GGG | + | chr5_2:28652009-28652028 | None:intergenic | 25.0% |
| ! | TTTCAAGAATTGAGAGAAAA+AGG | + | chr5_2:28652010-28652029 | None:intergenic | 25.0% |
| !! | AATTTGAAGCGAATTAATGT+GGG | + | chr5_2:28652079-28652098 | None:intergenic | 25.0% |
| !! | TAATTTGAAGCGAATTAATG+TGG | + | chr5_2:28652080-28652099 | None:intergenic | 25.0% |
| ! | ATTCGCTTCAAATTAAATTC+TGG | - | chr5_2:28652085-28652104 | Msa0766680:CDS | 25.0% |
| ! | TTCGCTTCAAATTAAATTCT+GGG | - | chr5_2:28652086-28652105 | Msa0766680:CDS | 25.0% |
| ! | GTGTTTATGTGATACTAATT+TGG | - | chr5_2:28652211-28652230 | Msa0766680:CDS | 25.0% |
| !!! | TTTGGTTTTTTGTTATGTGA+AGG | - | chr5_2:28652229-28652248 | Msa0766680:intron | 25.0% |
| !!! | TTTGTTATGTGAAGGTTTTA+AGG | - | chr5_2:28652237-28652256 | Msa0766680:intron | 25.0% |
| !! | TATTGTTCTTTGGATTTGTT+TGG | - | chr5_2:28652348-28652367 | Msa0766680:intron | 25.0% |
| ! | AGTGTAAATTGTATTTGTGT+TGG | - | chr5_2:28652702-28652721 | Msa0766680:intron | 25.0% |
| !!! | CTTGTTTTAATGTTGAATTG+TGG | - | chr5_2:28652750-28652769 | Msa0766680:intron | 25.0% |
| ! | TTTCAAATTATAATAACCCC+CGG | + | chr5_2:28652852-28652871 | None:intergenic | 25.0% |
| !!! | TAATTTGAAATGCTGATTCT+AGG | - | chr5_2:28652862-28652881 | Msa0766680:CDS | 25.0% |
| !!! | AATTTGAAATGCTGATTCTA+GGG | - | chr5_2:28652863-28652882 | Msa0766680:CDS | 25.0% |
| ! | GAGATGTACCTTATTAAAAA+GGG | + | chr5_2:28653031-28653050 | None:intergenic | 25.0% |
| ! | TGAGATGTACCTTATTAAAA+AGG | + | chr5_2:28653032-28653051 | None:intergenic | 25.0% |
| !! | TTTTTAATAAGGTACATCTC+AGG | - | chr5_2:28653031-28653050 | Msa0766680:intron | 25.0% |
| ! | ATACCTATCCTCAAAATTAA+TGG | + | chr5_2:28653131-28653150 | None:intergenic | 25.0% |
| !!! | TTAATTTTGAGGATAGGTAT+AGG | - | chr5_2:28653131-28653150 | Msa0766680:intron | 25.0% |
| ! | TTACTTGTATAATTTCCTGT+AGG | + | chr5_2:28653278-28653297 | None:intergenic | 25.0% |
| ! | ACAGGAAATTATACAAGTAA+TGG | - | chr5_2:28653278-28653297 | Msa0766680:intron | 25.0% |
| ! | AAGCTTAAATACTCATTTAG+TGG | - | chr5_2:28653395-28653414 | Msa0766680:intron | 25.0% |
| !!! | TACACAACTTTAGAATGATA+TGG | + | chr5_2:28653574-28653593 | None:intergenic | 25.0% |
| !! | TTCTTTTTGCAGTAATTTTG+AGG | - | chr5_2:28653597-28653616 | Msa0766680:intron | 25.0% |
| ! | GTCGAATGAAAAATATTACT+TGG | - | chr5_2:28653744-28653763 | Msa0766680:CDS | 25.0% |
| ! | ATAGTTAGAACAACACTATT+CGG | + | chr5_2:28653811-28653830 | None:intergenic | 25.0% |
| !! | TGATTCTTGACCTATATTTT+TGG | - | chr5_2:28653867-28653886 | Msa0766680:CDS | 25.0% |
| ! | CACATACTATCCAAAAATAT+AGG | + | chr5_2:28653880-28653899 | None:intergenic | 25.0% |
| !!! | CTATATTTTTGGATAGTATG+TGG | - | chr5_2:28653878-28653897 | Msa0766680:CDS | 25.0% |
| !! | CAGTTTTCTAATAAGACAAT+AGG | + | chr5_2:28654158-28654177 | None:intergenic | 25.0% |
| ! | AATAGGTCATGTTCTTTAAA+AGG | + | chr5_2:28654224-28654243 | None:intergenic | 25.0% |
| !!! | TTTTGAAAGGCTTACATATA+TGG | + | chr5_2:28654249-28654268 | None:intergenic | 25.0% |
| !!! | AACATGGCTTATATTTTGAA+AGG | + | chr5_2:28654262-28654281 | None:intergenic | 25.0% |
| ! | AAAATCAGTGTTATCAATAG+TGG | + | chr5_2:28654452-28654471 | None:intergenic | 25.0% |
| !!! | ACTGATTTTCAAAGAAGTTA+TGG | - | chr5_2:28654463-28654482 | Msa0766680:intron | 25.0% |
| !! | CTGATTTTCAAAGAAGTTAT+GGG | - | chr5_2:28654464-28654483 | Msa0766680:intron | 25.0% |
| !! | GTTTTCCTATTTAGTAAACT+TGG | - | chr5_2:28654589-28654608 | Msa0766680:intron | 25.0% |
| !!! | CAACTAAAATAAGTTGCTTT+TGG | - | chr5_2:28654619-28654638 | Msa0766680:intron | 25.0% |
| !!! | CTGTTTTTATTTTCCTTCTA+CGG | - | chr5_2:28655322-28655341 | Msa0766680:intron | 25.0% |
| ! | AAGTCTATGAAAACAAGAAA+TGG | + | chr5_2:28655381-28655400 | None:intergenic | 25.0% |
| !! | TATTAAAGCCCTTTTACTTT+TGG | - | chr5_2:28655444-28655463 | Msa0766680:CDS | 25.0% |
| !!! | ATTAAAGCCCTTTTACTTTT+GGG | - | chr5_2:28655445-28655464 | Msa0766680:CDS | 25.0% |
| ! | GCATATAATCGAGTAAATAA+GGG | + | chr5_2:28655629-28655648 | None:intergenic | 25.0% |
| ! | AGCATATAATCGAGTAAATA+AGG | + | chr5_2:28655630-28655649 | None:intergenic | 25.0% |
| !! | TATTGTGATTTAAGATTCTG+TGG | - | chr5_2:28655659-28655678 | Msa0766680:intron | 25.0% |
| ! | TAGATATCTAATTGCTGTAA+GGG | + | chr5_2:28655687-28655706 | None:intergenic | 25.0% |
| ! | ATAGATATCTAATTGCTGTA+AGG | + | chr5_2:28655688-28655707 | None:intergenic | 25.0% |
| ! | AATTTCAAAGACTGAAAATG+AGG | + | chr5_2:28656115-28656134 | None:intergenic | 25.0% |
| !! | AATCTTGTTGTATCGAAAAA+AGG | - | chr5_2:28656526-28656545 | Msa0766680:intron | 25.0% |
| ! | CCTACAAAATTCTTGTATAA+TGG | + | chr5_2:28656821-28656840 | None:intergenic | 25.0% |
| !! | CCATTATACAAGAATTTTGT+AGG | - | chr5_2:28656818-28656837 | Msa0766680:five_prime_UTR | 25.0% |
| !! | GAAAAAAGTGTAAAAAAGAG+AGG | - | chr5_2:28656855-28656874 | Msa0766680:five_prime_UTR | 25.0% |
| TCAAGAATTGAGAGAAAAAG+GGG | + | chr5_2:28652008-28652027 | None:intergenic | 30.0% | |
| CTTCAAATTAAATTCTGGGT+CGG | - | chr5_2:28652090-28652109 | Msa0766680:CDS | 30.0% | |
| ! | AATTTGCATTTTTGTGTCAG+AGG | - | chr5_2:28652127-28652146 | Msa0766680:CDS | 30.0% |
| !!! | GTTTTAAGGTTTCAATGAAG+AGG | - | chr5_2:28652251-28652270 | Msa0766680:intron | 30.0% |
| ! | TGTGTTCAAGTATTGTTCTT+TGG | - | chr5_2:28652338-28652357 | Msa0766680:intron | 30.0% |
| TCCTAAACAAAATAATGTCG+TGG | - | chr5_2:28652459-28652478 | Msa0766680:CDS | 30.0% | |
| !! | ACCACGACATTATTTTGTTT+AGG | + | chr5_2:28652463-28652482 | None:intergenic | 30.0% |
| TTAGAGTCAAGAAACTAACT+TGG | + | chr5_2:28652517-28652536 | None:intergenic | 30.0% | |
| !! | GCTTTTGTGTATTGTTGATT+AGG | - | chr5_2:28652623-28652642 | Msa0766680:intron | 30.0% |
| ! | GGTGTTATGTGACTTATATT+AGG | - | chr5_2:28652644-28652663 | Msa0766680:intron | 30.0% |
| GACTTATATTAGGTGTTAGA+TGG | - | chr5_2:28652654-28652673 | Msa0766680:intron | 30.0% | |
| ! | TGTTAAGTGTTGTTCTATAG+TGG | - | chr5_2:28652813-28652832 | Msa0766680:CDS | 30.0% |
| !!! | TAGTGGTTTTTGAAATTGTC+CGG | - | chr5_2:28652830-28652849 | Msa0766680:CDS | 30.0% |
| ! | CTTATTAAAAAGGGCATATC+CGG | + | chr5_2:28653022-28653041 | None:intergenic | 30.0% |
| !! | AAGTGTTGCCATTAATTTTG+AGG | - | chr5_2:28653120-28653139 | Msa0766680:intron | 30.0% |
| !! | TTGCCATTAATTTTGAGGAT+AGG | - | chr5_2:28653125-28653144 | Msa0766680:intron | 30.0% |
| CAATATTGCTTATCGATGAA+TGG | - | chr5_2:28653162-28653181 | Msa0766680:intron | 30.0% | |
| TAAATACTCATTTAGTGGCA+TGG | - | chr5_2:28653400-28653419 | Msa0766680:intron | 30.0% | |
| ! | AGCTTGATAAGACATCATTT+TGG | - | chr5_2:28653486-28653505 | Msa0766680:intron | 30.0% |
| ! | GCTTGATAAGACATCATTTT+GGG | - | chr5_2:28653487-28653506 | Msa0766680:intron | 30.0% |
| CAGAACAAAGTATATACCTA+GGG | + | chr5_2:28653517-28653536 | None:intergenic | 30.0% | |
| TCAGAACAAAGTATATACCT+AGG | + | chr5_2:28653518-28653537 | None:intergenic | 30.0% | |
| TGATATGGAGGTTAAATTAG+AGG | + | chr5_2:28653559-28653578 | None:intergenic | 30.0% | |
| !! | ACAACTTTAGAATGATATGG+AGG | + | chr5_2:28653571-28653590 | None:intergenic | 30.0% |
| TAAATATGGATATTCTACCC+TGG | - | chr5_2:28653702-28653721 | Msa0766680:CDS | 30.0% | |
| TGAAAAATATTACTTGGAGC+AGG | - | chr5_2:28653750-28653769 | Msa0766680:CDS | 30.0% | |
| CTATCCTAGTTTCGTTATTA+GGG | - | chr5_2:28654010-28654029 | Msa0766680:intron | 30.0% | |
| ATAAGACAATAGGTCATGTT+TGG | + | chr5_2:28654148-28654167 | None:intergenic | 30.0% | |
| ATGTTGCAGGCAAATAAAAA+GGG | + | chr5_2:28654295-28654314 | None:intergenic | 30.0% | |
| ! | AAAAAAAAAAGGCATGTTGC+AGG | + | chr5_2:28654308-28654327 | None:intergenic | 30.0% |
| GAAATACAAGATAGCATTGT+GGG | + | chr5_2:28654391-28654410 | None:intergenic | 30.0% | |
| TGAAATACAAGATAGCATTG+TGG | + | chr5_2:28654392-28654411 | None:intergenic | 30.0% | |
| CTATCTTGTATTTCACATAG+CGG | - | chr5_2:28654397-28654416 | Msa0766680:intron | 30.0% | |
| !!! | TATTTCACATAGCGGATTTT+TGG | - | chr5_2:28654405-28654424 | Msa0766680:intron | 30.0% |
| !! | TAGTGGATTGCAGAAAATAA+AGG | + | chr5_2:28654435-28654454 | None:intergenic | 30.0% |
| !! | TTCTAAAGTTCCAATCAAGT+TGG | + | chr5_2:28654506-28654525 | None:intergenic | 30.0% |
| !!! | AAATAAGTTGCTTTTGGTGT+AGG | - | chr5_2:28654625-28654644 | Msa0766680:intron | 30.0% |
| ACTCCTCAAATTGAGAATTT+AGG | - | chr5_2:28654911-28654930 | Msa0766680:intron | 30.0% | |
| CTCCTCAAATTGAGAATTTA+GGG | - | chr5_2:28654912-28654931 | Msa0766680:intron | 30.0% | |
| ! | ATTTAGGGCGAAAATTGATT+CGG | - | chr5_2:28654927-28654946 | Msa0766680:intron | 30.0% |
| TTCTGTAATTGAGGATAAGA+GGG | - | chr5_2:28655126-28655145 | Msa0766680:intron | 30.0% | |
| AACGTTTCCCAAAAGTAAAA+GGG | + | chr5_2:28655455-28655474 | None:intergenic | 30.0% | |
| AAACGTTTCCCAAAAGTAAA+AGG | + | chr5_2:28655456-28655475 | None:intergenic | 30.0% | |
| ! | GGTGGATTTGTAATTCAAAA+AGG | - | chr5_2:28655559-28655578 | Msa0766680:intron | 30.0% |
| GCATACCTGAATTACAAAAA+GGG | + | chr5_2:28655756-28655775 | None:intergenic | 30.0% | |
| TGCATACCTGAATTACAAAA+AGG | + | chr5_2:28655757-28655776 | None:intergenic | 30.0% | |
| ! | CATTTTTCTGCTCATTGTTT+GGG | - | chr5_2:28656004-28656023 | Msa0766680:intron | 30.0% |
| ! | TTTGCAATTTCAGGTGAAAA+AGG | - | chr5_2:28656165-28656184 | Msa0766680:intron | 30.0% |
| TACTGAAACCATAAAATCCA+AGG | + | chr5_2:28656251-28656270 | None:intergenic | 30.0% | |
| AATAACATGTCAGCAACATT+CGG | + | chr5_2:28656351-28656370 | None:intergenic | 30.0% | |
| ! | TTGGTTGATATGCATCATAA+TGG | - | chr5_2:28656557-28656576 | Msa0766680:intron | 30.0% |
| ! | ATCATAATGGAACCCTAAAA+TGG | - | chr5_2:28656570-28656589 | Msa0766680:intron | 30.0% |
| CAAGTTCATGAAAAGAGAAT+TGG | - | chr5_2:28656617-28656636 | Msa0766680:five_prime_UTR | 30.0% | |
| AGTTATAATCGAAAGACCAA+AGG | - | chr5_2:28656658-28656677 | Msa0766680:five_prime_UTR | 30.0% | |
| AGAAATTGTGATGAGTTTCT+AGG | - | chr5_2:28656728-28656747 | Msa0766680:five_prime_UTR | 30.0% | |
| GATGCAAAGAAATAGAGTTT+GGG | + | chr5_2:28656799-28656818 | None:intergenic | 30.0% | |
| ! | AAGAATTTTGTAGGAAACCA+GGG | - | chr5_2:28656827-28656846 | Msa0766680:five_prime_UTR | 30.0% |
| AGAGAAGAAGAAGATGAAAG+AGG | + | chr5_2:28651941-28651960 | None:intergenic | 35.0% | |
| TGGCATTCACATTTCATTTC+TGG | - | chr5_2:28652397-28652416 | Msa0766680:intron | 35.0% | |
| GGCATTCACATTTCATTTCT+GGG | - | chr5_2:28652398-28652417 | Msa0766680:intron | 35.0% | |
| CTTGGAGGAAGAAAAGTAAT+CGG | + | chr5_2:28652499-28652518 | None:intergenic | 35.0% | |
| ! | TTGTGGATTGTGAAATCTGT+TGG | - | chr5_2:28652767-28652786 | Msa0766680:intron | 35.0% |
| ! | TGTGGATTGTGAAATCTGTT+GGG | - | chr5_2:28652768-28652787 | Msa0766680:intron | 35.0% |
| !!! | AGTGGTTTTTGAAATTGTCC+GGG | - | chr5_2:28652831-28652850 | Msa0766680:CDS | 35.0% |
| TGTTCAATAAAAGGGATCTC+CGG | - | chr5_2:28653000-28653019 | Msa0766680:intron | 35.0% | |
| ! | CGGATATGCCCTTTTTAATA+AGG | - | chr5_2:28653020-28653039 | Msa0766680:intron | 35.0% |
| !! | TTATCGATGAATGGTTCTGA+TGG | - | chr5_2:28653171-28653190 | Msa0766680:intron | 35.0% |
| ATAATTTCCTGTAGGTTGTC+AGG | + | chr5_2:28653270-28653289 | None:intergenic | 35.0% | |
| ! | TTTCTAAGAGTTTCCTGCAA+TGG | - | chr5_2:28653302-28653321 | Msa0766680:intron | 35.0% |
| GGTATTTCAGATATGTGACA+TGG | - | chr5_2:28653421-28653440 | Msa0766680:intron | 35.0% | |
| AATGATGTCTTATCAAGCTC+TGG | + | chr5_2:28653485-28653504 | None:intergenic | 35.0% | |
| GCTATCCTAGTTTCGTTATT+AGG | - | chr5_2:28654009-28654028 | Msa0766680:intron | 35.0% | |
| ATTGCCCTAATAACGAAACT+AGG | + | chr5_2:28654017-28654036 | None:intergenic | 35.0% | |
| TTGAATCAACTAGCAGAAAC+TGG | + | chr5_2:28654053-28654072 | None:intergenic | 35.0% | |
| ! | GTTTCTGCTAGTTGATTCAA+TGG | - | chr5_2:28654053-28654072 | Msa0766680:intron | 35.0% |
| ! | AGTTGATTCAATGGCAATAG+TGG | - | chr5_2:28654062-28654081 | Msa0766680:intron | 35.0% |
| GGCTTACATATATGGTGAAT+AGG | + | chr5_2:28654241-28654260 | None:intergenic | 35.0% | |
| AAAGGGAATAAAGCAGAACA+TGG | + | chr5_2:28654278-28654297 | None:intergenic | 35.0% | |
| CATGTTGCAGGCAAATAAAA+AGG | + | chr5_2:28654296-28654315 | None:intergenic | 35.0% | |
| GACTTATTTCAACTGCTATG+CGG | - | chr5_2:28654352-28654371 | Msa0766680:intron | 35.0% | |
| !! | AAGTTCCAATCAAGTTGGAA+AGG | + | chr5_2:28654501-28654520 | None:intergenic | 35.0% |
| !!! | CTACTTTTTGGAACCTATGT+TGG | + | chr5_2:28654655-28654674 | None:intergenic | 35.0% |
| TGAGTTTCTGTAGATCAAGT+GGG | + | chr5_2:28654859-28654878 | None:intergenic | 35.0% | |
| ACTGCATCTTAGATATGAGA+TGG | - | chr5_2:28654979-28654998 | Msa0766680:intron | 35.0% | |
| TAGATATGAGATGGACATGT+TGG | - | chr5_2:28654988-28655007 | Msa0766680:CDS | 35.0% | |
| CATTCTTGCTTCTGTAATTG+AGG | - | chr5_2:28655117-28655136 | Msa0766680:CDS | 35.0% | |
| CTTCTGTAATTGAGGATAAG+AGG | - | chr5_2:28655125-28655144 | Msa0766680:intron | 35.0% | |
| AATTGAGGATAAGAGGGATT+TGG | - | chr5_2:28655132-28655151 | Msa0766680:intron | 35.0% | |
| TTGTAACGAAAAACCGTAGA+AGG | + | chr5_2:28655338-28655357 | None:intergenic | 35.0% | |
| AGTATTATCTCTTGTACACG+TGG | - | chr5_2:28655538-28655557 | Msa0766680:intron | 35.0% | |
| ! | ACTGTCCCTTTTTGTAATTC+AGG | - | chr5_2:28655748-28655767 | Msa0766680:intron | 35.0% |
| ! | AGGAGATAATTTCTGAAGAG+AGG | - | chr5_2:28655796-28655815 | Msa0766680:intron | 35.0% |
| TCACCAGCTGCAATATATAT+CGG | + | chr5_2:28655900-28655919 | None:intergenic | 35.0% | |
| TGTTGACAAACTCACAAGTT+GGG | + | chr5_2:28655970-28655989 | None:intergenic | 35.0% | |
| ATGTTGACAAACTCACAAGT+TGG | + | chr5_2:28655971-28655990 | None:intergenic | 35.0% | |
| ACAATGAGCAGAAAAATGGA+AGG | + | chr5_2:28656002-28656021 | None:intergenic | 35.0% | |
| CCAAACAATGAGCAGAAAAA+TGG | + | chr5_2:28656006-28656025 | None:intergenic | 35.0% | |
| !! | CCATTTTTCTGCTCATTGTT+TGG | - | chr5_2:28656003-28656022 | Msa0766680:intron | 35.0% |
| GAAAATGCATCTTTCAGATC+AGG | + | chr5_2:28656082-28656101 | None:intergenic | 35.0% | |
| CTTTCTGTGTTTGCAATTTC+AGG | - | chr5_2:28656156-28656175 | Msa0766680:intron | 35.0% | |
| TGAAACCATAAAATCCAAGG+CGG | + | chr5_2:28656248-28656267 | None:intergenic | 35.0% | |
| ACCTTTATCCCTACTTATGA+TGG | - | chr5_2:28656280-28656299 | Msa0766680:CDS | 35.0% | |
| CCTTTATCCCTACTTATGAT+GGG | - | chr5_2:28656281-28656300 | Msa0766680:CDS | 35.0% | |
| ATAACATGTCAGCAACATTC+GGG | + | chr5_2:28656350-28656369 | None:intergenic | 35.0% | |
| TAACAGTGTAAGTGCATTGT+TGG | - | chr5_2:28656440-28656459 | Msa0766680:CDS | 35.0% | |
| !! | TAACTAATTTGTTCGTCTGC+AGG | - | chr5_2:28656483-28656502 | Msa0766680:intron | 35.0% |
| ! | ATTATAACTTTTCGCCGAGT+TGG | + | chr5_2:28656647-28656666 | None:intergenic | 35.0% |
| TATAATCGAAAGACCAAAGG+AGG | - | chr5_2:28656661-28656680 | Msa0766680:five_prime_UTR | 35.0% | |
| ! | CAAGTATAGTATGAGTTGAG+AGG | - | chr5_2:28656767-28656786 | Msa0766680:five_prime_UTR | 35.0% |
| GGATGCAAAGAAATAGAGTT+TGG | + | chr5_2:28656800-28656819 | None:intergenic | 35.0% | |
| ! | CAAGAATTTTGTAGGAAACC+AGG | - | chr5_2:28656826-28656845 | Msa0766680:five_prime_UTR | 35.0% |
| !!! | TACACTTTTTTCAACTACCC+TGG | + | chr5_2:28656847-28656866 | None:intergenic | 35.0% |
| AGGAAATATTTGTTCCACTG+AGG | - | chr5_2:28656875-28656894 | Msa0766680:five_prime_UTR | 35.0% | |
| ! | TGCATTTTTGTGTCAGAGGT+AGG | - | chr5_2:28652131-28652150 | Msa0766680:CDS | 40.0% |
| ! | GCATTTTTGTGTCAGAGGTA+GGG | - | chr5_2:28652132-28652151 | Msa0766680:CDS | 40.0% |
| GTTTCAATGAAGAGGCAATG+AGG | - | chr5_2:28652259-28652278 | Msa0766680:intron | 40.0% | |
| GAGGCAATGAGGATAAGAAA+TGG | - | chr5_2:28652270-28652289 | Msa0766680:intron | 40.0% | |
| GCAATGAGGATAAGAAATGG+AGG | - | chr5_2:28652273-28652292 | Msa0766680:intron | 40.0% | |
| AGAAATGGAGGTTAGATCAG+AGG | - | chr5_2:28652285-28652304 | Msa0766680:intron | 40.0% | |
| GAAATGGAGGTTAGATCAGA+GGG | - | chr5_2:28652286-28652305 | Msa0766680:intron | 40.0% | |
| !! | AGGGTATACGTTTGAGGTTT+TGG | - | chr5_2:28652305-28652324 | Msa0766680:intron | 40.0% |
| TAGTGACAGTGAGTGAACTA+TGG | - | chr5_2:28652377-28652396 | Msa0766680:intron | 40.0% | |
| !! | TTCATTTCTGGGATCACTAC+TGG | - | chr5_2:28652409-28652428 | Msa0766680:intron | 40.0% |
| GAGTCAAGAAACTAACTTGG+AGG | + | chr5_2:28652514-28652533 | None:intergenic | 40.0% | |
| !!! | GTGGTTTTTGAAATTGTCCG+GGG | - | chr5_2:28652832-28652851 | Msa0766680:CDS | 40.0% |
| !!! | TGGTTTTTGAAATTGTCCGG+GGG | - | chr5_2:28652833-28652852 | Msa0766680:CDS | 40.0% |
| !! | GATGAATGGTTCTGATGGAT+AGG | - | chr5_2:28653176-28653195 | Msa0766680:intron | 40.0% |
| ! | TTTTCATTCGACCAGCTAAC+AGG | + | chr5_2:28653736-28653755 | None:intergenic | 40.0% |
| ACTAGCAGAAACTGGAATAG+CGG | + | chr5_2:28654045-28654064 | None:intergenic | 40.0% | |
| ATAGCATTGTGGGCAAATAG+TGG | + | chr5_2:28654381-28654400 | None:intergenic | 40.0% | |
| TGTGTCCTTTCCAACTTGAT+TGG | - | chr5_2:28654493-28654512 | Msa0766680:intron | 40.0% | |
| !!! | CTCAGTGAAGTGCTACTTTT+TGG | + | chr5_2:28654667-28654686 | None:intergenic | 40.0% |
| CAGTGTAGAGTCAATAGTGT+TGG | + | chr5_2:28654759-28654778 | None:intergenic | 40.0% | |
| ACCTTGTGCTTTCCATAAAG+CGG | + | chr5_2:28654791-28654810 | None:intergenic | 40.0% | |
| CTGAGTTTCTGTAGATCAAG+TGG | + | chr5_2:28654860-28654879 | None:intergenic | 40.0% | |
| CACTTGATCTACAGAAACTC+AGG | - | chr5_2:28654858-28654877 | Msa0766680:intron | 40.0% | |
| CGCCCTAAATTCTCAATTTG+AGG | + | chr5_2:28654917-28654936 | None:intergenic | 40.0% | |
| !!! | CCTCAATCTTTTGAGTTCCT+CGG | + | chr5_2:28655053-28655072 | None:intergenic | 40.0% |
| CAAGAATGAATTAGAAGCCG+AGG | + | chr5_2:28655105-28655124 | None:intergenic | 40.0% | |
| AAGAGGGATTTGGATCTTCT+CGG | - | chr5_2:28655142-28655161 | Msa0766680:intron | 40.0% | |
| CTTCTCGGTTTCTGAATAAC+AGG | - | chr5_2:28655157-28655176 | Msa0766680:intron | 40.0% | |
| ! | GCTCTGATAGAGAAACCTTT+TGG | - | chr5_2:28655216-28655235 | Msa0766680:intron | 40.0% |
| ATTATCTCTTGTACACGTGG+TGG | - | chr5_2:28655541-28655560 | Msa0766680:intron | 40.0% | |
| AATTCAGGTATGCATTCCCT+TGG | - | chr5_2:28655763-28655782 | Msa0766680:intron | 40.0% | |
| ACACCGATATATATTGCAGC+TGG | - | chr5_2:28655894-28655913 | Msa0766680:intron | 40.0% | |
| ATTGCAGCTGGTGAGATTTA+TGG | - | chr5_2:28655906-28655925 | Msa0766680:intron | 40.0% | |
| GTTGACAAACTCACAAGTTG+GGG | + | chr5_2:28655969-28655988 | None:intergenic | 40.0% | |
| CCCATCATAAGTAGGGATAA+AGG | + | chr5_2:28656284-28656303 | None:intergenic | 40.0% | |
| GGGTAAATACATACCTTCGA+TGG | + | chr5_2:28656330-28656349 | None:intergenic | 40.0% | |
| GTTGTATCGAAAAAAGGTCG+TGG | - | chr5_2:28656532-28656551 | Msa0766680:intron | 40.0% | |
| TCGAAAAAAGGTCGTGGAAT+TGG | - | chr5_2:28656538-28656557 | Msa0766680:intron | 40.0% | |
| !!! | AGCAAACTCGTGCCATTTTA+GGG | + | chr5_2:28656585-28656604 | None:intergenic | 40.0% |
| TAGAAATAGTCCTCCTCCTT+TGG | + | chr5_2:28656677-28656696 | None:intergenic | 40.0% | |
| ! | GATCAGAGGGTATACGTTTG+AGG | - | chr5_2:28652299-28652318 | Msa0766680:intron | 45.0% |
| GGAAGAAAAGTAATCGGAGG+CGG | + | chr5_2:28652493-28652512 | None:intergenic | 45.0% | |
| GGAGGAAGAAAAGTAATCGG+AGG | + | chr5_2:28652496-28652515 | None:intergenic | 45.0% | |
| TCTTTGACCTGACAACCTAC+AGG | - | chr5_2:28653260-28653279 | Msa0766680:intron | 45.0% | |
| CTAAGAGTTTCCTGCAATGG+TGG | - | chr5_2:28653305-28653324 | Msa0766680:intron | 45.0% | |
| TTGATTCAAGCCACCATTGC+AGG | + | chr5_2:28653318-28653337 | None:intergenic | 45.0% | |
| CTTGAATCAAATGCGTGCTG+CGG | - | chr5_2:28653328-28653347 | Msa0766680:intron | 45.0% | |
| GCACTGTTGTCAAATAGCAG+CGG | - | chr5_2:28653936-28653955 | Msa0766680:CDS | 45.0% | |
| TGGTGTAGGATAGCCAACAT+AGG | - | chr5_2:28654639-28654658 | Msa0766680:intron | 45.0% | |
| GACGCACGTCTAGCAAATAA+CGG | - | chr5_2:28654830-28654849 | Msa0766680:intron | 45.0% | |
| ATTCGGATGCTTCACGAGAA+GGG | - | chr5_2:28654944-28654963 | Msa0766680:intron | 45.0% | |
| CTAAGATGCAGTGCCACAAA+AGG | + | chr5_2:28654971-28654990 | None:intergenic | 45.0% | |
| !! | ATGGACATGTTGGCTTTCTC+AGG | - | chr5_2:28654998-28655017 | Msa0766680:CDS | 45.0% |
| ! | GCTTTCTCAGGTTGTACTCA+GGG | - | chr5_2:28655010-28655029 | Msa0766680:CDS | 45.0% |
| CCGAGGAACTCAAAAGATTG+AGG | - | chr5_2:28655050-28655069 | Msa0766680:CDS | 45.0% | |
| ATGAATTAGAAGCCGAGGCA+TGG | + | chr5_2:28655100-28655119 | None:intergenic | 45.0% | |
| CCACTACTCTCGTATCCAAA+AGG | + | chr5_2:28655234-28655253 | None:intergenic | 45.0% | |
| ! | CCTTTTGGATACGAGAGTAG+TGG | - | chr5_2:28655231-28655250 | Msa0766680:intron | 45.0% |
| ATTCCCTTGGTGGAGAGAAA+AGG | - | chr5_2:28655776-28655795 | Msa0766680:intron | 45.0% | |
| ! | TCTCCTTTTCTCTCCACCAA+GGG | + | chr5_2:28655782-28655801 | None:intergenic | 45.0% |
| ! | ATCTCCTTTTCTCTCCACCA+AGG | + | chr5_2:28655783-28655802 | None:intergenic | 45.0% |
| ! | TTCTGAAGAGAGGAGATCAC+AGG | - | chr5_2:28655806-28655825 | Msa0766680:intron | 45.0% |
| TCTGAAGAGAGGAGATCACA+GGG | - | chr5_2:28655807-28655826 | Msa0766680:intron | 45.0% | |
| ATGTCCTTTGACACCAGAAG+AGG | - | chr5_2:28655833-28655852 | Msa0766680:intron | 45.0% | |
| ACCTAAGGCTCGAAGAACTA+AGG | + | chr5_2:28655862-28655881 | None:intergenic | 45.0% | |
| ! | GTTCTTCGAGCCTTAGGTTT+TGG | - | chr5_2:28655864-28655883 | Msa0766680:intron | 45.0% |
| !! | TTCGAGCCTTAGGTTTTGGT+AGG | - | chr5_2:28655868-28655887 | Msa0766680:intron | 45.0% |
| !! | TCGAGCCTTAGGTTTTGGTA+GGG | - | chr5_2:28655869-28655888 | Msa0766680:intron | 45.0% |
| TGTCTCCCTACCAAAACCTA+AGG | + | chr5_2:28655877-28655896 | None:intergenic | 45.0% | |
| AGATTTATGGCGGTGAACGT+AGG | - | chr5_2:28655919-28655938 | Msa0766680:intron | 45.0% | |
| !! | AGTAGGGATAAAGGTGTCAC+TGG | + | chr5_2:28656275-28656294 | None:intergenic | 45.0% |
| !!! | CAGCAAACTCGTGCCATTTT+AGG | + | chr5_2:28656586-28656605 | None:intergenic | 45.0% |
| !! | AAATGGCACGAGTTTGCTGA+TGG | - | chr5_2:28656587-28656606 | Msa0766680:intron | 45.0% |
| AGAGAATTGGACAGCCAACT+CGG | - | chr5_2:28656630-28656649 | Msa0766680:five_prime_UTR | 45.0% | |
| AATCGAAAGACCAAAGGAGG+AGG | - | chr5_2:28656664-28656683 | Msa0766680:five_prime_UTR | 45.0% | |
| !! | GTTATTATTTAATTATAATA+CGG | + | chr5_2:28652910-28652929 | None:intergenic | 5.0% |
| !! | GTATTATAATTAAATAATAA+CGG | - | chr5_2:28652909-28652928 | Msa0766680:CDS | 5.0% |
| ! | CATCATTTTGGGCAGACCCT+AGG | - | chr5_2:28653498-28653517 | Msa0766680:intron | 50.0% |
| TCATTCGACCAGCTAACAGG+AGG | + | chr5_2:28653733-28653752 | None:intergenic | 50.0% | |
| !! | CTGCAGATTCTGCCGCTTTA+TGG | - | chr5_2:28654776-28654795 | Msa0766680:intron | 50.0% |
| ! | GCCGCTTTATGGAAAGCACA+AGG | - | chr5_2:28654787-28654806 | Msa0766680:intron | 50.0% |
| ! | CAGGTGTCGTGTCAATTACG+AGG | - | chr5_2:28654877-28654896 | Msa0766680:intron | 50.0% |
| GATTCGGATGCTTCACGAGA+AGG | - | chr5_2:28654943-28654962 | Msa0766680:intron | 50.0% | |
| ! | TCACGAGAAGGGACCTTTTG+TGG | - | chr5_2:28654955-28654974 | Msa0766680:intron | 50.0% |
| ! | GGCTTTCTCAGGTTGTACTC+AGG | - | chr5_2:28655009-28655028 | Msa0766680:CDS | 50.0% |
| TTGCTCAGAGAAAGAAGCCG+AGG | - | chr5_2:28655033-28655052 | Msa0766680:CDS | 50.0% | |
| ! | TCATGTTTGGCTCCATGCCT+CGG | - | chr5_2:28655085-28655104 | Msa0766680:CDS | 50.0% |
| TCAGGTATGCATTCCCTTGG+TGG | - | chr5_2:28655766-28655785 | Msa0766680:intron | 50.0% | |
| TCCTTTGACACCAGAAGAGG+CGG | - | chr5_2:28655836-28655855 | Msa0766680:intron | 50.0% | |
| ! | GCCTTAGTTCTTCGAGCCTT+AGG | - | chr5_2:28655858-28655877 | Msa0766680:intron | 50.0% |
| GCAGCTGGTGAGATTTATGG+CGG | - | chr5_2:28655909-28655928 | Msa0766680:intron | 50.0% | |
| TGCTTGCGCTCGCTCATTAA+TGG | - | chr5_2:28656051-28656070 | Msa0766680:intron | 50.0% | |
| CCATCTGCGATGAGTGATTC+TGG | + | chr5_2:28656225-28656244 | None:intergenic | 50.0% | |
| CCAGAATCACTCATCGCAGA+TGG | - | chr5_2:28656222-28656241 | Msa0766680:intron | 50.0% | |
| ! | GATGGCCGCCTTGGATTTTA+TGG | - | chr5_2:28656240-28656259 | Msa0766680:CDS | 50.0% |
| AACTTGTGGAAGGCCATCGA+AGG | - | chr5_2:28656314-28656333 | Msa0766680:CDS | 50.0% | |
| ACATAGACACTCGTGAGGGT+TGG | + | chr5_2:28656702-28656721 | None:intergenic | 50.0% | |
| CCTCACATAGACACTCGTGA+GGG | + | chr5_2:28656706-28656725 | None:intergenic | 50.0% | |
| TCCTCACATAGACACTCGTG+AGG | + | chr5_2:28656707-28656726 | None:intergenic | 50.0% | |
| ! | CCATGTTTTGCAAGCCTCAG+TGG | + | chr5_2:28656892-28656911 | None:intergenic | 50.0% |
| CCACTGAGGCTTGCAAAACA+TGG | - | chr5_2:28656889-28656908 | Msa0766680:five_prime_UTR | 50.0% | |
| !! | GCTAACAGGAGGCATCTCCA+GGG | + | chr5_2:28653722-28653741 | None:intergenic | 55.0% |
| !! | AGCTAACAGGAGGCATCTCC+AGG | + | chr5_2:28653723-28653742 | None:intergenic | 55.0% |
| TGGAGATGCCTCCTGTTAGC+TGG | - | chr5_2:28653722-28653741 | Msa0766680:CDS | 55.0% | |
| AGAACTAAGGCCGCCTCTTC+TGG | + | chr5_2:28655849-28655868 | None:intergenic | 55.0% | |
| TGCGCTCGCTCATTAATGGC+TGG | - | chr5_2:28656055-28656074 | Msa0766680:intron | 55.0% | |
| CCCTCACGAGTGTCTATGTG+AGG | - | chr5_2:28656703-28656722 | Msa0766680:five_prime_UTR | 55.0% | |
| ! | GCCGCCTCTTCTGGTGTCAA+AGG | + | chr5_2:28655840-28655859 | None:intergenic | 60.0% |
| CTCATCGCAGATGGCCGCCT+TGG | - | chr5_2:28656231-28656250 | Msa0766680:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 28651810 | 28656942 | 28651810 | ID=Msa0766680;Name=Msa0766680 |
| chr5_2 | mRNA | 28651810 | 28656942 | 28651810 | ID=Msa0766680-mRNA-1;Parent=Msa0766680;Name=Msa0766680-mRNA-1;_AED=0.09;_eAED=0.09;_QI=377|1|1|1|0.87|0.77|9|167|490 |
| chr5_2 | exon | 28651810 | 28652247 | 28651810 | ID=Msa0766680-mRNA-1:exon:11043;Parent=Msa0766680-mRNA-1 |
| chr5_2 | exon | 28652417 | 28652574 | 28652417 | ID=Msa0766680-mRNA-1:exon:11042;Parent=Msa0766680-mRNA-1 |
| chr5_2 | exon | 28652778 | 28652982 | 28652778 | ID=Msa0766680-mRNA-1:exon:11041;Parent=Msa0766680-mRNA-1 |
| chr5_2 | exon | 28653681 | 28653970 | 28653681 | ID=Msa0766680-mRNA-1:exon:11040;Parent=Msa0766680-mRNA-1 |
| chr5_2 | exon | 28654981 | 28655143 | 28654981 | ID=Msa0766680-mRNA-1:exon:11039;Parent=Msa0766680-mRNA-1 |
| chr5_2 | exon | 28655233 | 28655321 | 28655233 | ID=Msa0766680-mRNA-1:exon:11038;Parent=Msa0766680-mRNA-1 |
| chr5_2 | exon | 28655403 | 28655470 | 28655403 | ID=Msa0766680-mRNA-1:exon:11037;Parent=Msa0766680-mRNA-1 |
| chr5_2 | exon | 28656235 | 28656501 | 28656235 | ID=Msa0766680-mRNA-1:exon:11036;Parent=Msa0766680-mRNA-1 |
| chr5_2 | exon | 28656604 | 28656942 | 28656604 | ID=Msa0766680-mRNA-1:exon:11035;Parent=Msa0766680-mRNA-1 |
| chr5_2 | five_prime_UTR | 28656604 | 28656942 | 28656604 | ID=Msa0766680-mRNA-1:five_prime_utr;Parent=Msa0766680-mRNA-1 |
| chr5_2 | five_prime_UTR | 28656464 | 28656501 | 28656464 | ID=Msa0766680-mRNA-1:five_prime_utr;Parent=Msa0766680-mRNA-1 |
| chr5_2 | CDS | 28656235 | 28656463 | 28656235 | ID=Msa0766680-mRNA-1:cds;Parent=Msa0766680-mRNA-1 |
| chr5_2 | CDS | 28655403 | 28655470 | 28655403 | ID=Msa0766680-mRNA-1:cds;Parent=Msa0766680-mRNA-1 |
| chr5_2 | CDS | 28655233 | 28655321 | 28655233 | ID=Msa0766680-mRNA-1:cds;Parent=Msa0766680-mRNA-1 |
| chr5_2 | CDS | 28654981 | 28655143 | 28654981 | ID=Msa0766680-mRNA-1:cds;Parent=Msa0766680-mRNA-1 |
| chr5_2 | CDS | 28653681 | 28653970 | 28653681 | ID=Msa0766680-mRNA-1:cds;Parent=Msa0766680-mRNA-1 |
| chr5_2 | CDS | 28652778 | 28652982 | 28652778 | ID=Msa0766680-mRNA-1:cds;Parent=Msa0766680-mRNA-1 |
| chr5_2 | CDS | 28652417 | 28652574 | 28652417 | ID=Msa0766680-mRNA-1:cds;Parent=Msa0766680-mRNA-1 |
| chr5_2 | CDS | 28651977 | 28652247 | 28651977 | ID=Msa0766680-mRNA-1:cds;Parent=Msa0766680-mRNA-1 |
| chr5_2 | three_prime_UTR | 28651810 | 28651976 | 28651810 | ID=Msa0766680-mRNA-1:three_prime_utr;Parent=Msa0766680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
