Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846240 | XP_003613885.1 | 96.761 | 494 | 12 | 2 | 1 | 490 | 1 | 494 | 0.0 | 997 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846240 | sp|Q6NQ51|RRT4_ARATH | 70.711 | 478 | 132 | 1 | 9 | 486 | 27 | 496 | 0.0 | 730 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846240 | G7JWH1 | 96.761 | 494 | 12 | 2 | 1 | 490 | 1 | 494 | 0.0 | 997 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042280 | Msa0846240 | 0.802705 | 4.941203e-49 | -8.615850e-47 |
| Msa0048180 | Msa0846240 | 0.822103 | 2.833400e-53 | -8.615850e-47 |
| Msa0052610 | Msa0846240 | 0.829364 | 5.364664e-55 | -8.615850e-47 |
| Msa0057610 | Msa0846240 | 0.821251 | 4.459037e-53 | -8.615850e-47 |
| Msa0057710 | Msa0846240 | 0.807667 | 4.519486e-50 | -8.615850e-47 |
| Msa0073670 | Msa0846240 | 0.806764 | 7.021228e-50 | -8.615850e-47 |
| Msa0076040 | Msa0846240 | 0.810051 | 1.396970e-50 | -8.615850e-47 |
| Msa0093850 | Msa0846240 | 0.802829 | 4.659524e-49 | -8.615850e-47 |
| Msa0666230 | Msa0846240 | 0.823016 | 1.738098e-53 | -8.615850e-47 |
| Msa0669520 | Msa0846240 | 0.849443 | 3.222706e-60 | -8.615850e-47 |
| Msa0709780 | Msa0846240 | 0.805011 | 1.639909e-49 | -8.615850e-47 |
| Msa0726090 | Msa0846240 | 0.992833 | 9.977496e-196 | -8.615850e-47 |
| Msa0738040 | Msa0846240 | 0.800772 | 1.232047e-48 | -8.615850e-47 |
| Msa0738100 | Msa0846240 | 0.819083 | 1.399302e-52 | -8.615850e-47 |
| Msa0766680 | Msa0846240 | 0.821847 | 3.247478e-53 | -8.615850e-47 |
| Msa0785130 | Msa0846240 | 0.829485 | 5.013702e-55 | -8.615850e-47 |
| Msa0788770 | Msa0846240 | 0.805407 | 1.354899e-49 | -8.615850e-47 |
| Msa0817540 | Msa0846240 | 0.822393 | 2.426150e-53 | -8.615850e-47 |
| Msa0826500 | Msa0846240 | 0.808963 | 2.391718e-50 | -8.615850e-47 |
| Msa0128860 | Msa0846240 | 0.801416 | 9.097699e-49 | -8.615850e-47 |
| Msa0152870 | Msa0846240 | 0.801842 | 7.441089e-49 | -8.615850e-47 |
| Msa0167480 | Msa0846240 | 0.833067 | 6.596793e-56 | -8.615850e-47 |
| Msa0173890 | Msa0846240 | 0.807841 | 4.151044e-50 | -8.615850e-47 |
| Msa0174730 | Msa0846240 | 0.801844 | 7.432228e-49 | -8.615850e-47 |
| Msa0181610 | Msa0846240 | 0.812751 | 3.621285e-51 | -8.615850e-47 |
| Msa0196190 | Msa0846240 | 0.818958 | 1.493664e-52 | -8.615850e-47 |
| Msa0231100 | Msa0846240 | 0.815141 | 1.075988e-51 | -8.615850e-47 |
| Msa0405650 | Msa0846240 | 0.805300 | 1.426565e-49 | -8.615850e-47 |
| Msa0435370 | Msa0846240 | 0.801105 | 1.053296e-48 | -8.615850e-47 |
| Msa0443390 | Msa0846240 | 0.832317 | 1.012873e-55 | -8.615850e-47 |
| Msa0241830 | Msa0846240 | 0.815452 | 9.178393e-52 | -8.615850e-47 |
| Msa0249540 | Msa0846240 | 0.810252 | 1.264193e-50 | -8.615850e-47 |
| Msa0262480 | Msa0846240 | 0.806994 | 6.277651e-50 | -8.615850e-47 |
| Msa0296250 | Msa0846240 | 0.824433 | 8.095362e-54 | -8.615850e-47 |
| Msa0307850 | Msa0846240 | 0.803692 | 3.087860e-49 | -8.615850e-47 |
| Msa0326590 | Msa0846240 | 0.808130 | 3.602371e-50 | -8.615850e-47 |
| Msa0348830 | Msa0846240 | 0.806330 | 8.669702e-50 | -8.615850e-47 |
| Msa0518030 | Msa0846240 | 0.812829 | 3.481020e-51 | -8.615850e-47 |
| Msa0526540 | Msa0846240 | 0.818097 | 2.340977e-52 | -8.615850e-47 |
| Msa0527150 | Msa0846240 | 0.813835 | 2.093214e-51 | -8.615850e-47 |
| Msa0531650 | Msa0846240 | 0.800075 | 1.708803e-48 | -8.615850e-47 |
| Msa0534750 | Msa0846240 | 0.832939 | 7.100607e-56 | -8.615850e-47 |
| Msa0576940 | Msa0846240 | 0.808754 | 2.651422e-50 | -8.615850e-47 |
| Msa0593700 | Msa0846240 | 0.804487 | 2.109944e-49 | -8.615850e-47 |
| Msa0846240 | Msa1005820 | 0.815228 | 1.029350e-51 | -8.615850e-47 |
| Msa0846240 | Msa1019240 | 0.826709 | 2.337209e-54 | -8.615850e-47 |
| Msa0846240 | Msa1019260 | 0.830557 | 2.746759e-55 | -8.615850e-47 |
| Msa0846240 | Msa1079230 | 0.818625 | 1.777388e-52 | -8.615850e-47 |
| Msa0846240 | Msa1104210 | 0.824085 | 9.771449e-54 | -8.615850e-47 |
| Msa0846240 | Msa1117550 | 0.809662 | 1.693833e-50 | -8.615850e-47 |
| Msa0846240 | Msa1124110 | 0.808752 | 2.654404e-50 | -8.615850e-47 |
| Msa0846240 | Msa1126510 | 0.804207 | 2.413278e-49 | -8.615850e-47 |
| Msa0846240 | Msa1127590 | 0.802338 | 5.882325e-49 | -8.615850e-47 |
| Msa0846240 | Msa1131560 | 0.814044 | 1.882449e-51 | -8.615850e-47 |
| Msa0846240 | Msa1145240 | 0.814346 | 1.614172e-51 | -8.615850e-47 |
| Msa0846240 | Msa1166870 | 0.810977 | 8.813606e-51 | -8.615850e-47 |
| Msa0846240 | Msa1168950 | 0.803701 | 3.074872e-49 | -8.615850e-47 |
| Msa0846240 | Msa1169040 | 0.815632 | 8.369372e-52 | -8.615850e-47 |
| Msa0846240 | Msa1174530 | 0.800643 | 1.309134e-48 | -8.615850e-47 |
| Msa0846240 | Msa1184370 | 0.809069 | 2.270718e-50 | -8.615850e-47 |
| Msa0846240 | Msa1227690 | 0.802807 | 4.707223e-49 | -8.615850e-47 |
| Msa0846240 | Msa1235250 | 0.802269 | 6.076977e-49 | -8.615850e-47 |
| Msa0846240 | Msa1271580 | 0.802418 | 5.663288e-49 | -8.615850e-47 |
| Msa0846240 | Msa1333560 | 0.823497 | 1.341546e-53 | -8.615850e-47 |
| Msa0846240 | Msa1349570 | 0.801621 | 8.260687e-49 | -8.615850e-47 |
| Msa0846240 | Msa1363330 | 0.813451 | 2.542575e-51 | -8.615850e-47 |
| Msa0846240 | Msa1379760 | 0.805573 | 1.250562e-49 | -8.615850e-47 |
| Msa0846240 | Msa1386600 | 0.813730 | 2.208059e-51 | -8.615850e-47 |
| Msa0846240 | Msa1427560 | 0.801552 | 8.532902e-49 | -8.615850e-47 |
| Msa0846240 | Msa1443930 | 0.807789 | 4.256663e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846240 | MtrunA17_Chr5g0417871 | 96.761 | 494 | 12 | 2 | 1 | 490 | 1 | 494 | 0.0 | 997 |
| Msa0846240 | MtrunA17_Chr4g0042711 | 79.668 | 482 | 95 | 2 | 9 | 490 | 28 | 506 | 0.0 | 821 |
| Msa0846240 | MtrunA17_Chr4g0061781 | 61.194 | 469 | 173 | 4 | 10 | 472 | 43 | 508 | 0.0 | 603 |
| Msa0846240 | MtrunA17_Chr6g0455571 | 59.871 | 466 | 182 | 3 | 9 | 472 | 45 | 507 | 0.0 | 600 |
| Msa0846240 | MtrunA17_Chr2g0307971 | 60.805 | 472 | 173 | 4 | 3 | 472 | 46 | 507 | 0.0 | 599 |
| Msa0846240 | MtrunA17_Chr5g0426591 | 49.392 | 411 | 196 | 4 | 75 | 473 | 101 | 511 | 1.92e-139 | 411 |
| Msa0846240 | MtrunA17_Chr4g0070551 | 47.739 | 398 | 201 | 5 | 81 | 476 | 228 | 620 | 7.52e-134 | 400 |
| Msa0846240 | MtrunA17_Chr4g0008451 | 47.912 | 407 | 200 | 6 | 76 | 475 | 222 | 623 | 9.58e-134 | 401 |
| Msa0846240 | MtrunA17_Chr3g0132371 | 47.887 | 426 | 203 | 6 | 68 | 477 | 120 | 542 | 2.39e-132 | 394 |
| Msa0846240 | MtrunA17_Chr5g0436321 | 46.482 | 398 | 206 | 5 | 80 | 475 | 160 | 552 | 5.55e-129 | 386 |
| Msa0846240 | MtrunA17_Chr3g0129981 | 47.433 | 409 | 190 | 7 | 84 | 477 | 117 | 515 | 3.15e-128 | 382 |
| Msa0846240 | MtrunA17_Chr5g0399311 | 43.099 | 413 | 212 | 9 | 77 | 483 | 120 | 515 | 1.00e-100 | 312 |
| Msa0846240 | MtrunA17_Chr4g0056061 | 41.606 | 411 | 217 | 8 | 77 | 481 | 104 | 497 | 4.29e-99 | 308 |
| Msa0846240 | MtrunA17_Chr3g0143821 | 43.434 | 396 | 209 | 9 | 82 | 475 | 112 | 494 | 2.58e-98 | 307 |
| Msa0846240 | MtrunA17_Chr5g0448581 | 44.192 | 396 | 199 | 9 | 84 | 474 | 122 | 500 | 1.81e-97 | 305 |
| Msa0846240 | MtrunA17_Chr1g0204121 | 38.498 | 426 | 228 | 10 | 70 | 478 | 77 | 485 | 1.38e-87 | 277 |
| Msa0846240 | MtrunA17_Chr3g0123521 | 39.295 | 397 | 213 | 10 | 71 | 448 | 141 | 528 | 4.88e-86 | 275 |
| Msa0846240 | MtrunA17_Chr5g0412251 | 37.442 | 430 | 220 | 10 | 81 | 474 | 86 | 502 | 4.78e-85 | 271 |
| Msa0846240 | MtrunA17_Chr3g0132951 | 36.652 | 442 | 228 | 11 | 68 | 473 | 90 | 515 | 3.28e-84 | 269 |
| Msa0846240 | MtrunA17_Chr4g0043911 | 35.024 | 414 | 246 | 10 | 81 | 480 | 150 | 554 | 4.96e-80 | 259 |
| Msa0846240 | MtrunA17_Chr5g0424241 | 37.864 | 412 | 226 | 11 | 82 | 473 | 158 | 559 | 1.74e-79 | 258 |
| Msa0846240 | MtrunA17_Chr4g0075311 | 37.642 | 441 | 220 | 11 | 78 | 473 | 161 | 591 | 9.28e-78 | 254 |
| Msa0846240 | MtrunA17_Chr1g0204141 | 36.300 | 427 | 239 | 10 | 70 | 478 | 77 | 488 | 2.29e-77 | 251 |
| Msa0846240 | MtrunA17_Chr2g0284071 | 35.520 | 442 | 236 | 8 | 75 | 475 | 209 | 642 | 6.42e-77 | 253 |
| Msa0846240 | MtrunA17_Chr1g0160781 | 34.474 | 409 | 241 | 9 | 81 | 473 | 149 | 546 | 3.42e-76 | 249 |
| Msa0846240 | MtrunA17_Chr7g0240241 | 91.129 | 124 | 7 | 1 | 240 | 359 | 1 | 124 | 7.19e-73 | 226 |
| Msa0846240 | MtrunA17_Chr3g0077321 | 34.719 | 409 | 244 | 11 | 81 | 475 | 147 | 546 | 1.47e-72 | 239 |
| Msa0846240 | MtrunA17_Chr4g0010511 | 36.386 | 404 | 232 | 9 | 84 | 479 | 236 | 622 | 8.88e-68 | 228 |
| Msa0846240 | MtrunA17_Chr3g0087291 | 35.264 | 397 | 238 | 8 | 84 | 475 | 176 | 558 | 2.17e-67 | 226 |
| Msa0846240 | MtrunA17_Chr4g0003561 | 32.603 | 365 | 224 | 8 | 81 | 441 | 75 | 421 | 2.44e-57 | 196 |
| Msa0846240 | MtrunA17_Chr1g0146501 | 31.715 | 309 | 183 | 9 | 78 | 363 | 82 | 385 | 1.54e-40 | 154 |
| Msa0846240 | MtrunA17_Chr3g0127811 | 29.722 | 360 | 214 | 10 | 22 | 363 | 7 | 345 | 1.34e-39 | 149 |
| Msa0846240 | MtrunA17_Chr7g0220381 | 30.693 | 303 | 191 | 6 | 70 | 356 | 87 | 386 | 2.26e-39 | 151 |
| Msa0846240 | MtrunA17_Chr4g0002361 | 26.888 | 331 | 193 | 14 | 81 | 400 | 86 | 378 | 3.13e-23 | 101 |
| Msa0846240 | MtrunA17_Chr2g0298881 | 25.000 | 344 | 201 | 10 | 81 | 410 | 35 | 335 | 4.11e-22 | 97.8 |
| Msa0846240 | MtrunA17_Chr1g0172911 | 50.000 | 68 | 10 | 1 | 79 | 122 | 19 | 86 | 4.45e-13 | 66.2 |
| Msa0846240 | MtrunA17_Chr1g0172911 | 59.184 | 49 | 20 | 0 | 193 | 241 | 80 | 128 | 3.97e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846240 | AT1G14020.1 | 70.711 | 478 | 132 | 1 | 9 | 486 | 27 | 496 | 0.0 | 730 |
| Msa0846240 | AT2G03280.1 | 68.172 | 465 | 133 | 4 | 9 | 472 | 30 | 480 | 0.0 | 673 |
| Msa0846240 | AT2G03280.2 | 64.431 | 492 | 133 | 5 | 9 | 472 | 30 | 507 | 0.0 | 659 |
| Msa0846240 | AT5G15740.1 | 58.925 | 465 | 186 | 3 | 9 | 472 | 38 | 498 | 0.0 | 582 |
| Msa0846240 | AT3G02250.1 | 57.849 | 465 | 191 | 3 | 9 | 472 | 38 | 498 | 0.0 | 570 |
| Msa0846240 | AT1G22460.1 | 46.925 | 439 | 219 | 6 | 45 | 474 | 125 | 558 | 1.49e-135 | 403 |
| Msa0846240 | AT2G37980.1 | 47.202 | 411 | 210 | 5 | 81 | 489 | 226 | 631 | 2.03e-134 | 403 |
| Msa0846240 | AT3G54100.1 | 46.731 | 413 | 208 | 6 | 76 | 481 | 212 | 619 | 1.25e-132 | 398 |
| Msa0846240 | AT5G35570.1 | 47.355 | 397 | 202 | 5 | 80 | 474 | 250 | 641 | 2.17e-129 | 390 |
| Msa0846240 | AT5G01100.1 | 48.241 | 398 | 198 | 5 | 81 | 474 | 216 | 609 | 8.85e-128 | 385 |
| Msa0846240 | AT5G64600.1 | 46.699 | 409 | 205 | 6 | 81 | 480 | 117 | 521 | 8.51e-126 | 377 |
| Msa0846240 | AT4G38390.1 | 44.670 | 394 | 206 | 6 | 81 | 473 | 123 | 505 | 2.25e-103 | 320 |
| Msa0846240 | AT1G76270.1 | 44.162 | 394 | 204 | 8 | 84 | 475 | 109 | 488 | 6.44e-103 | 319 |
| Msa0846240 | AT1G20550.1 | 41.176 | 408 | 224 | 7 | 84 | 489 | 112 | 505 | 6.49e-102 | 317 |
| Msa0846240 | AT4G16650.2 | 44.390 | 410 | 204 | 10 | 72 | 474 | 112 | 504 | 1.29e-94 | 297 |
| Msa0846240 | AT4G16650.1 | 44.390 | 410 | 204 | 10 | 72 | 474 | 112 | 504 | 1.29e-94 | 297 |
| Msa0846240 | AT4G24530.1 | 37.674 | 430 | 219 | 10 | 81 | 474 | 101 | 517 | 2.10e-86 | 275 |
| Msa0846240 | AT3G26370.1 | 38.287 | 397 | 217 | 9 | 71 | 448 | 149 | 536 | 2.62e-86 | 276 |
| Msa0846240 | AT1G04910.1 | 36.087 | 460 | 274 | 9 | 21 | 474 | 30 | 475 | 5.21e-86 | 274 |
| Msa0846240 | AT1G62330.1 | 35.682 | 440 | 227 | 10 | 82 | 475 | 222 | 651 | 6.11e-83 | 270 |
| Msa0846240 | AT1G38065.2 | 37.681 | 414 | 226 | 11 | 81 | 473 | 26 | 428 | 6.25e-83 | 264 |
| Msa0846240 | AT1G38065.1 | 37.681 | 414 | 226 | 11 | 81 | 473 | 36 | 438 | 8.41e-83 | 264 |
| Msa0846240 | AT5G65470.1 | 35.431 | 429 | 226 | 10 | 83 | 473 | 87 | 502 | 2.56e-82 | 264 |
| Msa0846240 | AT1G11990.1 | 39.706 | 408 | 220 | 11 | 82 | 473 | 191 | 588 | 3.40e-82 | 266 |
| Msa0846240 | AT1G38131.1 | 37.681 | 414 | 226 | 11 | 81 | 473 | 155 | 557 | 1.78e-81 | 264 |
| Msa0846240 | AT1G11990.2 | 36.629 | 445 | 219 | 11 | 82 | 473 | 176 | 610 | 3.05e-77 | 254 |
| Msa0846240 | AT1G14970.3 | 35.036 | 411 | 240 | 10 | 81 | 475 | 9 | 408 | 1.65e-76 | 246 |
| Msa0846240 | AT1G35510.1 | 35.366 | 410 | 242 | 9 | 80 | 475 | 158 | 558 | 4.08e-76 | 249 |
| Msa0846240 | AT1G14970.2 | 35.036 | 411 | 240 | 10 | 81 | 475 | 35 | 434 | 4.49e-76 | 246 |
| Msa0846240 | AT1G29200.4 | 37.644 | 433 | 223 | 10 | 81 | 474 | 70 | 494 | 4.63e-76 | 247 |
| Msa0846240 | AT1G29200.1 | 37.644 | 433 | 223 | 10 | 81 | 474 | 70 | 494 | 4.63e-76 | 247 |
| Msa0846240 | AT5G63390.1 | 37.845 | 399 | 228 | 8 | 84 | 476 | 167 | 551 | 1.61e-75 | 248 |
| Msa0846240 | AT1G14970.1 | 35.036 | 411 | 240 | 10 | 81 | 475 | 155 | 554 | 4.90e-75 | 246 |
| Msa0846240 | AT1G29200.2 | 37.644 | 433 | 223 | 10 | 81 | 474 | 186 | 610 | 5.41e-75 | 248 |
| Msa0846240 | AT2G01480.1 | 35.049 | 408 | 238 | 10 | 81 | 472 | 154 | 550 | 2.64e-74 | 244 |
| Msa0846240 | AT1G29200.3 | 37.471 | 427 | 220 | 10 | 87 | 474 | 2 | 420 | 5.24e-74 | 240 |
| Msa0846240 | AT2G01480.2 | 37.255 | 357 | 205 | 6 | 81 | 421 | 154 | 507 | 7.48e-74 | 243 |
| Msa0846240 | AT3G07900.1 | 34.596 | 396 | 247 | 5 | 84 | 477 | 191 | 576 | 3.96e-68 | 229 |
| Msa0846240 | AT2G44500.1 | 32.900 | 462 | 271 | 11 | 45 | 480 | 120 | 568 | 5.85e-67 | 225 |
| Msa0846240 | AT1G52630.1 | 33.333 | 372 | 226 | 9 | 74 | 442 | 67 | 419 | 7.34e-59 | 201 |
| Msa0846240 | AT1G52630.2 | 31.445 | 353 | 214 | 9 | 96 | 442 | 1 | 331 | 7.46e-50 | 174 |
| Msa0846240 | AT3G03810.2 | 33.981 | 309 | 187 | 6 | 70 | 363 | 78 | 384 | 3.63e-47 | 173 |
| Msa0846240 | AT3G03810.1 | 33.981 | 309 | 187 | 6 | 70 | 363 | 78 | 384 | 3.63e-47 | 173 |
| Msa0846240 | AT3G26370.2 | 38.636 | 220 | 122 | 6 | 71 | 280 | 149 | 365 | 1.78e-43 | 158 |
| Msa0846240 | AT3G30300.2 | 32.602 | 319 | 183 | 10 | 72 | 363 | 82 | 395 | 1.77e-42 | 160 |
| Msa0846240 | AT3G30300.1 | 32.602 | 319 | 183 | 10 | 72 | 363 | 82 | 395 | 1.77e-42 | 160 |
| Msa0846240 | AT2G44500.2 | 34.733 | 262 | 147 | 6 | 67 | 310 | 150 | 405 | 5.91e-36 | 138 |
Find 124 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCAGATTCTGCCGCTTTA+TGG | 0.087587 | 5_4:-25989286 | Msa0846240:intron |
| ACTCCTCAAATTGAGAATTT+AGG | 0.103676 | 5_4:-25989151 | Msa0846240:CDS |
| TGGCATTCACATTTCATTTC+TGG | 0.140172 | 5_4:-25991665 | Msa0846240:CDS |
| CTCCTCAAATTGAGAATTTA+GGG | 0.207048 | 5_4:-25989150 | Msa0846240:CDS |
| ATTGCAGCTGGTGAGATTTA+TGG | 0.210044 | 5_4:-25988156 | Msa0846240:CDS |
| ATTCGCTTCAAATTAAATTC+TGG | 0.238823 | 5_4:-25991977 | Msa0846240:five_prime_UTR |
| AGCTTGATAAGACATCATTT+TGG | 0.262663 | 5_4:-25990576 | Msa0846240:CDS |
| TTTGCAATTTCAGGTGAAAA+AGG | 0.267125 | 5_4:-25987901 | Msa0846240:intron |
| CCTACAAAATTCTTGTATAA+TGG | 0.268435 | 5_4:+25987248 | None:intergenic |
| AGGGTATACGTTTGAGGTTT+TGG | 0.275369 | 5_4:-25991757 | Msa0846240:CDS |
| GTTCTTCGAGCCTTAGGTTT+TGG | 0.287595 | 5_4:-25988198 | Msa0846240:CDS |
| GGATGCAAAGAAATAGAGTT+TGG | 0.295265 | 5_4:+25987269 | None:intergenic |
| GGCATTCACATTTCATTTCT+GGG | 0.303223 | 5_4:-25991664 | Msa0846240:CDS |
| CGCCCTAAATTCTCAATTTG+AGG | 0.307590 | 5_4:+25989148 | None:intergenic |
| TATTGTTCTTTGGATTTGTT+TGG | 0.312689 | 5_4:-25991714 | Msa0846240:CDS |
| AGAACTAAGGCCGCCTCTTC+TGG | 0.312939 | 5_4:+25988216 | None:intergenic |
| TGTGTTCAAGTATTGTTCTT+TGG | 0.316418 | 5_4:-25991724 | Msa0846240:CDS |
| TTCGCTTCAAATTAAATTCT+GGG | 0.322597 | 5_4:-25991976 | Msa0846240:five_prime_UTR |
| ATCATAATGGAACCCTAAAA+TGG | 0.324135 | 5_4:-25987496 | Msa0846240:CDS |
| CCATCTGCGATGAGTGATTC+TGG | 0.327493 | 5_4:+25987844 | None:intergenic |
| AGAAATTGTGATGAGTTTCT+AGG | 0.340861 | 5_4:-25987338 | Msa0846240:CDS |
| CAAGTTCATGAGAAGAGAAT+TGG | 0.350119 | 5_4:-25987449 | Msa0846240:CDS |
| CTTTCATTGGACCAGCTAAC+AGG | 0.361116 | 5_4:+25990329 | None:intergenic |
| TAGAAATAGTCCTCCTCCTT+TGG | 0.381323 | 5_4:+25987392 | None:intergenic |
| ACCTTTATCCCTACTTATGA+TGG | 0.388352 | 5_4:-25987786 | Msa0846240:CDS |
| AGCTAACAGGAGGCATCTCC+AGG | 0.388940 | 5_4:+25990342 | None:intergenic |
| CTCCAAGTAATATCTTTCAT+TGG | 0.409045 | 5_4:+25990316 | None:intergenic |
| GCCTTAGTTCTTCGAGCCTT+AGG | 0.411617 | 5_4:-25988204 | Msa0846240:CDS |
| TGTTGACAAACTCACAAGTT+GGG | 0.416079 | 5_4:+25988095 | None:intergenic |
| ATGGACATGTTGGCTTTCTC+AGG | 0.416770 | 5_4:-25989064 | Msa0846240:CDS |
| CCTAAAATGGCACGAGTTTG+CGG | 0.417592 | 5_4:-25987483 | Msa0846240:CDS |
| CTCATCGCAGATGGCCGCCT+TGG | 0.420168 | 5_4:-25987835 | Msa0846240:CDS |
| GGCTTTCTCAGGTTGTACTC+AGG | 0.430358 | 5_4:-25989053 | Msa0846240:CDS |
| TTCATTTCTGGGATTACTAC+TGG | 0.431994 | 5_4:-25991653 | Msa0846240:CDS |
| GATGCAAAGAAATAGAGTTT+GGG | 0.433046 | 5_4:+25987270 | None:intergenic |
| CTAAGAGTTTCTTGCAATGG+TGG | 0.441440 | 5_4:-25990757 | Msa0846240:CDS |
| GAGGCAATGAGGATAAGAAA+TGG | 0.442208 | 5_4:-25991792 | Msa0846240:exon |
| CCCATCATAAGTAGGGATAA+AGG | 0.444424 | 5_4:+25987785 | None:intergenic |
| GATCAGAGGGTATACGTTTG+AGG | 0.452447 | 5_4:-25991763 | Msa0846240:CDS |
| TCACCAGCTGCAATATATAT+CGG | 0.453493 | 5_4:+25988165 | None:intergenic |
| ATTTAGGGCGAAAATTGATT+CGG | 0.453678 | 5_4:-25989135 | Msa0846240:CDS |
| GAAATAAAAGAATGTAGTTA+CGG | 0.455310 | 5_4:+25992089 | None:intergenic |
| TAGTGACAGTGAGTGAACTA+TGG | 0.456536 | 5_4:-25991685 | Msa0846240:CDS |
| TGGAGATGCCTCCTGTTAGC+TGG | 0.458292 | 5_4:-25990340 | Msa0846240:CDS |
| TTTCTAAGAGTTTCTTGCAA+TGG | 0.464890 | 5_4:-25990760 | Msa0846240:CDS |
| GCTTTCTCAGGTTGTACTCA+GGG | 0.467938 | 5_4:-25989052 | Msa0846240:CDS |
| CTTGGAGGAAGAAAAGTAAT+CGG | 0.481816 | 5_4:+25991566 | None:intergenic |
| TTGGTTGATATGCATCATAA+TGG | 0.483990 | 5_4:-25987509 | Msa0846240:CDS |
| AGAAATGGAGGTTAGATCAG+AGG | 0.484479 | 5_4:-25991777 | Msa0846240:exon |
| TAATTAATAAAGGTAAATGA+AGG | 0.486861 | 5_4:+25987154 | None:intergenic |
| ACCTAAGGCTCGAAGAACTA+AGG | 0.487906 | 5_4:+25988203 | None:intergenic |
| AATTCAGGTATGCATTCCCT+TGG | 0.488348 | 5_4:-25988299 | Msa0846240:intron |
| TCAGGTATGCATTCCCTTGG+TGG | 0.491881 | 5_4:-25988296 | Msa0846240:intron |
| CTAAGATGCAGTGCCACAAA+AGG | 0.492255 | 5_4:+25989094 | None:intergenic |
| GTCCAATGAAAGATATTACT+TGG | 0.492504 | 5_4:-25990318 | Msa0846240:CDS |
| ACAGGAAATTATACAAGTAA+TGG | 0.492528 | 5_4:-25990784 | Msa0846240:intron |
| GCCATGTTCCCATCATAAGT+AGG | 0.492805 | 5_4:+25987777 | None:intergenic |
| AATGATGTCTTATCAAGCTC+TGG | 0.501078 | 5_4:+25990580 | None:intergenic |
| AGGAGATAATTTCTGAAGAG+AGG | 0.503455 | 5_4:-25988266 | Msa0846240:CDS |
| TAGATATGAGATGGACATGT+TGG | 0.506081 | 5_4:-25989074 | Msa0846240:CDS |
| CCATGTTCCCATCATAAGTA+GGG | 0.511468 | 5_4:+25987778 | None:intergenic |
| CTTCAAATTAAATTCTGGGT+CGG | 0.511953 | 5_4:-25991972 | Msa0846240:five_prime_UTR |
| GAAATGGAGGTTAGATCAGA+GGG | 0.517232 | 5_4:-25991776 | Msa0846240:CDS |
| ATTCCCTTGGTGGAGAGAAA+AGG | 0.524582 | 5_4:-25988286 | Msa0846240:CDS |
| TAATTTGAAGCGAATTAATG+TGG | 0.527626 | 5_4:+25991985 | None:intergenic |
| GCCGCCTCTTCTGGTGTCAA+AGG | 0.536521 | 5_4:+25988225 | None:intergenic |
| GATTCGGATGCTTCACGAGA+AGG | 0.536968 | 5_4:-25989119 | Msa0846240:CDS |
| CCTTTATCCCTACTTATGAT+GGG | 0.537062 | 5_4:-25987785 | Msa0846240:CDS |
| AGTAGGGATAAAGGTGTCAC+TGG | 0.538681 | 5_4:+25987794 | None:intergenic |
| TACGGAGAAAGATTGAGAGA+AGG | 0.540208 | 5_4:+25992107 | None:intergenic |
| TTCTGAAGAGAGGAGATCAC+AGG | 0.544928 | 5_4:-25988256 | Msa0846240:CDS |
| TGAAAGATATTACTTGGAGC+AGG | 0.549066 | 5_4:-25990312 | Msa0846240:intron |
| CCCTACTTATGATGGGAACA+TGG | 0.557915 | 5_4:-25987778 | Msa0846240:CDS |
| CTGAGTTTCTGTAGATCAAG+TGG | 0.559172 | 5_4:+25989205 | None:intergenic |
| ACCTTGTGCTTTCCATAAAG+CGG | 0.559211 | 5_4:+25989274 | None:intergenic |
| AGAGAAGGAGAAGAAGAAAG+AGG | 0.560418 | 5_4:+25992122 | None:intergenic |
| ATTCGGATGCTTCACGAGAA+GGG | 0.561013 | 5_4:-25989118 | Msa0846240:CDS |
| CCGAGGAACTCAAAAGATTG+AGG | 0.570538 | 5_4:-25989012 | Msa0846240:intron |
| AATTTGAAGCGAATTAATGT+GGG | 0.574222 | 5_4:+25991986 | None:intergenic |
| CCAGAATCACTCATCGCAGA+TGG | 0.574783 | 5_4:-25987844 | Msa0846240:CDS |
| TGGGAACATGGCAAAACTTG+TGG | 0.580054 | 5_4:-25987766 | Msa0846240:CDS |
| CACTTGATCTACAGAAACTC+AGG | 0.581030 | 5_4:-25989204 | Msa0846240:CDS |
| TACTGAAACCATAAAATCCA+AGG | 0.582440 | 5_4:+25987818 | None:intergenic |
| ACACCGATATATATTGCAGC+TGG | 0.586158 | 5_4:-25988168 | Msa0846240:CDS |
| TCCTTTGACACCAGAAGAGG+CGG | 0.587100 | 5_4:-25988226 | Msa0846240:CDS |
| GACGCACGTCTAGCAAATAA+CGG | 0.591633 | 5_4:-25989232 | Msa0846240:CDS |
| AGAGAATTGGACAGCCAACT+CGG | 0.593176 | 5_4:-25987436 | Msa0846240:CDS |
| AATTAATAAAGGTAAATGAA+GGG | 0.593666 | 5_4:+25987155 | None:intergenic |
| CAAGTATAGTATGAGTTGAG+AGG | 0.595061 | 5_4:-25987299 | Msa0846240:exon |
| GCATATTCTGCAAGCCTCAG+TGG | 0.596243 | 5_4:+25987177 | None:intergenic |
| GCAATGAGGATAAGAAATGG+AGG | 0.598407 | 5_4:-25991789 | Msa0846240:exon |
| TGTCTCCCTACCAAAACCTA+AGG | 0.604346 | 5_4:+25988188 | None:intergenic |
| AGATTTATGGCGGTGAACGT+AGG | 0.606142 | 5_4:-25988143 | Msa0846240:CDS |
| TATAATCGACAGACCAAAGG+AGG | 0.606405 | 5_4:-25987405 | Msa0846240:CDS |
| TCCTAAACAAAATAATGTCG+TGG | 0.607462 | 5_4:-25991603 | Msa0846240:CDS |
| AACTTGTGGAAGGCCATCGA+AGG | 0.608718 | 5_4:-25987752 | Msa0846240:intron |
| AACATGGCAAAACTTGTGGA+AGG | 0.609196 | 5_4:-25987762 | Msa0846240:CDS |
| ACATAGACACTCATGAGGGT+TGG | 0.613452 | 5_4:+25987367 | None:intergenic |
| GTTGACAAACTCACAAGTTG+GGG | 0.614088 | 5_4:+25988096 | None:intergenic |
| AAATGGCACGAGTTTGCGGA+TGG | 0.616122 | 5_4:-25987479 | Msa0846240:CDS |
| ATGTCCTTTGACACCAGAAG+AGG | 0.616187 | 5_4:-25988229 | Msa0846240:CDS |
| TTGCTCAGAGAAAGAAGCCG+AGG | 0.622924 | 5_4:-25989029 | Msa0846240:CDS |
| GGAAGAAAAGTAATCGGAGG+CGG | 0.623913 | 5_4:+25991572 | None:intergenic |
| CTTGAATCAAATGCGTGCTG+CGG | 0.623967 | 5_4:-25990734 | Msa0846240:intron |
| AGTTATAATCGACAGACCAA+AGG | 0.626511 | 5_4:-25987408 | Msa0846240:CDS |
| CCCTCATGAGTGTCTATGTG+AGG | 0.627232 | 5_4:-25987363 | Msa0846240:CDS |
| ACTGCATCTTAGATATGAGA+TGG | 0.633287 | 5_4:-25989083 | Msa0846240:CDS |
| GGGTAAATACATACCTTCGA+TGG | 0.636072 | 5_4:+25987739 | None:intergenic |
| AATCGACAGACCAAAGGAGG+AGG | 0.642909 | 5_4:-25987402 | Msa0846240:CDS |
| TAAATATGGATATTCTACCC+TGG | 0.644817 | 5_4:-25990360 | Msa0846240:CDS |
| GCCGCTTTATGGAAAGCACA+AGG | 0.648292 | 5_4:-25989275 | Msa0846240:CDS |
| GTTTCAATGAAGAGGCAATG+AGG | 0.648573 | 5_4:-25991803 | Msa0846240:five_prime_UTR |
| AGGAAATATTTGTTCCACTG+AGG | 0.653180 | 5_4:-25987191 | Msa0846240:three_prime_UTR |
| TGAGTTTCTGTAGATCAAGT+GGG | 0.659206 | 5_4:+25989206 | None:intergenic |
| TCATTGGACCAGCTAACAGG+AGG | 0.662833 | 5_4:+25990332 | None:intergenic |
| TCCTCACATAGACACTCATG+AGG | 0.668777 | 5_4:+25987362 | None:intergenic |
| CCTCACATAGACACTCATGA+GGG | 0.677969 | 5_4:+25987363 | None:intergenic |
| GCTAACAGGAGGCATCTCCA+GGG | 0.682429 | 5_4:+25990343 | None:intergenic |
| CAGGTGTCGTGTCAATTACG+AGG | 0.683646 | 5_4:-25989185 | Msa0846240:CDS |
| TCTGAAGAGAGGAGATCACA+GGG | 0.690255 | 5_4:-25988255 | Msa0846240:CDS |
| GGAGGAAGAAAAGTAATCGG+AGG | 0.701615 | 5_4:+25991569 | None:intergenic |
| GCAGCTGGTGAGATTTATGG+CGG | 0.732613 | 5_4:-25988153 | Msa0846240:CDS |
| GGTATTTCAGATATGTGACA+TGG | 0.740956 | 5_4:-25990641 | Msa0846240:intron |
| TGAAACCATAAAATCCAAGG+CGG | 0.765862 | 5_4:+25987821 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTATTTAGAGATATTA+AGG | - | chr5_4:25990605-25990624 | Msa0846240:CDS | 10.0% |
| !! | GATCAATTAATTTATATCAA+AGG | + | chr5_4:25987928-25987947 | None:intergenic | 15.0% |
| !!! | GTTGGTAAATTTTATTTTTT+TGG | - | chr5_4:25988051-25988070 | Msa0846240:intron | 15.0% |
| !! | ATAAATCAATGTTCAATAAA+AGG | - | chr5_4:25988322-25988341 | Msa0846240:intron | 15.0% |
| !! | TAAATCAATGTTCAATAAAA+GGG | - | chr5_4:25988323-25988342 | Msa0846240:intron | 15.0% |
| !! | ATTGAAAAATTAACAATTTG+GGG | + | chr5_4:25989237-25989256 | None:intergenic | 15.0% |
| !! | CATTGAAAAATTAACAATTT+GGG | + | chr5_4:25989238-25989257 | None:intergenic | 15.0% |
| !! | TGGAATAAAATAGAATTATA+GGG | - | chr5_4:25989411-25989430 | Msa0846240:intron | 15.0% |
| !! | AGGGAAAAAAAAAAAAAAAA+AGG | + | chr5_4:25989648-25989667 | None:intergenic | 15.0% |
| !! | ATGAAGAAATTTATAGTTAT+GGG | - | chr5_4:25989882-25989901 | Msa0846240:intron | 15.0% |
| !! | AAATATCATTTACTAATATG+AGG | + | chr5_4:25990521-25990540 | None:intergenic | 15.0% |
| !! | AATACTAAAAACACAATAAA+TGG | + | chr5_4:25990855-25990874 | None:intergenic | 15.0% |
| !! | AATTAATAAAGGTAAATGAA+GGG | + | chr5_4:25992241-25992260 | None:intergenic | 15.0% |
| !! | TAATTAATAAAGGTAAATGA+AGG | + | chr5_4:25992242-25992261 | None:intergenic | 15.0% |
| !!! | GTTTTCTTTTTTTTTTTTCC+GGG | + | chr5_4:25987193-25987212 | None:intergenic | 20.0% |
| !!! | GGTTTTCTTTTTTTTTTTTC+CGG | + | chr5_4:25987194-25987213 | None:intergenic | 20.0% |
| !!! | GTATAATGCAATTTTCTTTT+TGG | + | chr5_4:25987215-25987234 | None:intergenic | 20.0% |
| !! | GAAATAAAAGAATGTAGTTA+CGG | + | chr5_4:25987307-25987326 | None:intergenic | 20.0% |
| !! | TTTCAAGAATTGAGAAAAAA+GGG | + | chr5_4:25987342-25987361 | None:intergenic | 20.0% |
| !!! | TTTTCAAGAATTGAGAAAAA+AGG | + | chr5_4:25987343-25987362 | None:intergenic | 20.0% |
| !!! | TGCTCAAAATCAAATTTTTT+TGG | + | chr5_4:25987384-25987403 | None:intergenic | 20.0% |
| !! | AAAACATATCTGATACAAAA+AGG | + | chr5_4:25987878-25987897 | None:intergenic | 20.0% |
| !!! | TTTTATTTTCTCACTCATTT+TGG | - | chr5_4:25988555-25988574 | Msa0846240:intron | 20.0% |
| !!! | TATTTACTGCTAAACTTTTT+AGG | + | chr5_4:25989019-25989038 | None:intergenic | 20.0% |
| !! | AAAAAGTTTAGCAGTAAATA+TGG | - | chr5_4:25989019-25989038 | Msa0846240:CDS | 20.0% |
| !!! | TTCTAACTATTTGCATTTTA+AGG | - | chr5_4:25989152-25989171 | Msa0846240:CDS | 20.0% |
| !! | GCATTGAAAAATTAACAATT+TGG | + | chr5_4:25989239-25989258 | None:intergenic | 20.0% |
| !! | GTGGAATAAAATAGAATTAT+AGG | - | chr5_4:25989410-25989429 | Msa0846240:intron | 20.0% |
| !! | AGTCAATTATATGTTTGAAA+GGG | + | chr5_4:25989667-25989686 | None:intergenic | 20.0% |
| !! | AAGTCAATTATATGTTTGAA+AGG | + | chr5_4:25989668-25989687 | None:intergenic | 20.0% |
| !! | CATGAAGAAATTTATAGTTA+TGG | - | chr5_4:25989881-25989900 | Msa0846240:intron | 20.0% |
| !! | AAAAACCAAGTTTACTAAAT+AGG | + | chr5_4:25989928-25989947 | None:intergenic | 20.0% |
| !!! | AAACTAAAATAAGTTGCTTT+TGG | - | chr5_4:25989950-25989969 | Msa0846240:intron | 20.0% |
| !!! | GTATTTTTATGTTTCATGTT+TGG | - | chr5_4:25990403-25990422 | Msa0846240:CDS | 20.0% |
| !! | GCATATAATCAAGTAAATAA+GGG | + | chr5_4:25990960-25990979 | None:intergenic | 20.0% |
| !! | AGCATATAATCAAGTAAATA+AGG | + | chr5_4:25990961-25990980 | None:intergenic | 20.0% |
| !!! | CAAGATTGTTTTTCTAAAAT+CGG | + | chr5_4:25991840-25991859 | None:intergenic | 20.0% |
| !!! | TTTTAGAAAAACAATCTTGT+TGG | - | chr5_4:25991841-25991860 | Msa0846240:intron | 20.0% |
| !!! | AATTTTGTGTCTTTTTCGAT+TGG | + | chr5_4:25987168-25987187 | None:intergenic | 25.0% |
| !! | AAAAAGACACAAAATTTTCC+CGG | - | chr5_4:25987172-25987191 | Msa0846240:three_prime_UTR | 25.0% |
| ! | TTCAAGAATTGAGAAAAAAG+GGG | + | chr5_4:25987341-25987360 | None:intergenic | 25.0% |
| !! | AATTTGAAGCGAATTAATGT+GGG | + | chr5_4:25987410-25987429 | None:intergenic | 25.0% |
| !! | TAATTTGAAGCGAATTAATG+TGG | + | chr5_4:25987411-25987430 | None:intergenic | 25.0% |
| ! | ATTCGCTTCAAATTAAATTC+TGG | - | chr5_4:25987416-25987435 | Msa0846240:CDS | 25.0% |
| ! | TTCGCTTCAAATTAAATTCT+GGG | - | chr5_4:25987417-25987436 | Msa0846240:CDS | 25.0% |
| !!! | AATTTTCATTTTTGTGTCAG+AGG | - | chr5_4:25987458-25987477 | Msa0846240:CDS | 25.0% |
| ! | GTGTTTATGTGATACTAATT+TGG | - | chr5_4:25987542-25987561 | Msa0846240:CDS | 25.0% |
| !!! | TTTGGTTTTTTGTTATGTGA+AGG | - | chr5_4:25987560-25987579 | Msa0846240:CDS | 25.0% |
| !!! | TTTGTTATGTGAAGGTTTTA+AGG | - | chr5_4:25987568-25987587 | Msa0846240:intron | 25.0% |
| !! | TATTGTTCTTTGGATTTGTT+TGG | - | chr5_4:25987679-25987698 | Msa0846240:intron | 25.0% |
| ! | AGTGTAAATTGTATTTGTGT+TGG | - | chr5_4:25988033-25988052 | Msa0846240:intron | 25.0% |
| !!! | CTTGTTTTAATGTTGAATTG+TGG | - | chr5_4:25988081-25988100 | Msa0846240:intron | 25.0% |
| ! | TTTCAAATTATAATAACCCC+AGG | + | chr5_4:25988183-25988202 | None:intergenic | 25.0% |
| !!! | TAATTTGAAATGCTGATTCT+AGG | - | chr5_4:25988193-25988212 | Msa0846240:CDS | 25.0% |
| !!! | AATTTGAAATGCTGATTCTA+GGG | - | chr5_4:25988194-25988213 | Msa0846240:CDS | 25.0% |
| ! | GAGATGTACCTTATTAAAAA+GGG | + | chr5_4:25988362-25988381 | None:intergenic | 25.0% |
| ! | TGAGATGTACCTTATTAAAA+AGG | + | chr5_4:25988363-25988382 | None:intergenic | 25.0% |
| !! | TTTTTAATAAGGTACATCTC+AGG | - | chr5_4:25988362-25988381 | Msa0846240:intron | 25.0% |
| ! | ATACCTATCCTCAAAATTAA+TGG | + | chr5_4:25988462-25988481 | None:intergenic | 25.0% |
| !!! | TTAATTTTGAGGATAGGTAT+AGG | - | chr5_4:25988462-25988481 | Msa0846240:intron | 25.0% |
| ! | TTACTTGTATAATTTCCTGT+AGG | + | chr5_4:25988609-25988628 | None:intergenic | 25.0% |
| ! | ACAGGAAATTATACAAGTAA+TGG | - | chr5_4:25988609-25988628 | Msa0846240:intron | 25.0% |
| ! | AAGCTTAAATACTCATTTAG+TGG | - | chr5_4:25988726-25988745 | Msa0846240:intron | 25.0% |
| !!! | TACACAACTTTAGAATGATA+TGG | + | chr5_4:25988905-25988924 | None:intergenic | 25.0% |
| !! | TTCTTTTTGCAGTAATTTTG+AGG | - | chr5_4:25988928-25988947 | Msa0846240:intron | 25.0% |
| !! | TGATTCTTGACCTATATTTT+TGG | - | chr5_4:25989198-25989217 | Msa0846240:CDS | 25.0% |
| !!! | ACCTATATTTTTGGATAGTA+TGG | - | chr5_4:25989207-25989226 | Msa0846240:CDS | 25.0% |
| !! | CAGTTTTCTAATAAGACAAT+AGG | + | chr5_4:25989487-25989506 | None:intergenic | 25.0% |
| ! | AATAGGTCATGTTCTTTAAA+AGG | + | chr5_4:25989553-25989572 | None:intergenic | 25.0% |
| !!! | TTTTGAAAGGCTTACATATA+TGG | + | chr5_4:25989578-25989597 | None:intergenic | 25.0% |
| !!! | AACATGGCTTATATTTTGAA+AGG | + | chr5_4:25989591-25989610 | None:intergenic | 25.0% |
| ! | ATGTTGCAGACAAATAAAAA+GGG | + | chr5_4:25989624-25989643 | None:intergenic | 25.0% |
| ! | AAAATCAGTGTTATCAATAG+TGG | + | chr5_4:25989783-25989802 | None:intergenic | 25.0% |
| !!! | ACTGATTTTCAAAGAAGTTA+TGG | - | chr5_4:25989794-25989813 | Msa0846240:intron | 25.0% |
| !! | CTGATTTTCAAAGAAGTTAT+GGG | - | chr5_4:25989795-25989814 | Msa0846240:intron | 25.0% |
| !! | GTTTTCCTATTTAGTAAACT+TGG | - | chr5_4:25989920-25989939 | Msa0846240:intron | 25.0% |
| !!! | CTGTTTTTATTTTCCTTCTA+CGG | - | chr5_4:25990653-25990672 | Msa0846240:intron | 25.0% |
| ! | AAGTCTATGAAAACAAGAAA+TGG | + | chr5_4:25990712-25990731 | None:intergenic | 25.0% |
| !! | TATTAAAGCCCTTTTACTTT+TGG | - | chr5_4:25990775-25990794 | Msa0846240:CDS | 25.0% |
| !!! | ATTAAAGCCCTTTTACTTTT+GGG | - | chr5_4:25990776-25990795 | Msa0846240:CDS | 25.0% |
| !! | TATTGTGATTTAAGATTCTG+TGG | - | chr5_4:25990990-25991009 | Msa0846240:intron | 25.0% |
| ! | TAGATATCTAATTGCTGTAA+GGG | + | chr5_4:25991018-25991037 | None:intergenic | 25.0% |
| ! | ATAGATATCTAATTGCTGTA+AGG | + | chr5_4:25991019-25991038 | None:intergenic | 25.0% |
| ! | AATTTCAAAGACTGAAAATG+AGG | + | chr5_4:25991442-25991461 | None:intergenic | 25.0% |
| ! | CCTACAAAATTCTTGTATAA+TGG | + | chr5_4:25992148-25992167 | None:intergenic | 25.0% |
| !! | CCATTATACAAGAATTTTGT+AGG | - | chr5_4:25992145-25992164 | Msa0846240:five_prime_UTR | 25.0% |
| !! | GAAAAAAGTGTAAAAAAGAG+AGG | - | chr5_4:25992182-25992201 | Msa0846240:five_prime_UTR | 25.0% |
| CTTCAAATTAAATTCTGGGT+CGG | - | chr5_4:25987421-25987440 | Msa0846240:CDS | 30.0% | |
| !!! | GTTTTAAGGTTTCAATGAAG+AGG | - | chr5_4:25987582-25987601 | Msa0846240:intron | 30.0% |
| ! | TGTGTTCAAGTATTGTTCTT+TGG | - | chr5_4:25987669-25987688 | Msa0846240:intron | 30.0% |
| TCCTAAACAAAATAATGTCG+TGG | - | chr5_4:25987790-25987809 | Msa0846240:CDS | 30.0% | |
| !! | ACCACGACATTATTTTGTTT+AGG | + | chr5_4:25987794-25987813 | None:intergenic | 30.0% |
| TTAGAGTCAAGAAACTAACT+TGG | + | chr5_4:25987848-25987867 | None:intergenic | 30.0% | |
| !! | GCTTTTGTGTATTGTTGATT+AGG | - | chr5_4:25987954-25987973 | Msa0846240:intron | 30.0% |
| ! | GGTGTTATGTGACTTATATT+AGG | - | chr5_4:25987975-25987994 | Msa0846240:intron | 30.0% |
| GACTTATATTAGGTGTTAGA+TGG | - | chr5_4:25987985-25988004 | Msa0846240:intron | 30.0% | |
| ! | TGTTAAGTGTTGTTCTATAG+TGG | - | chr5_4:25988144-25988163 | Msa0846240:CDS | 30.0% |
| ! | CTTATTAAAAAGGGCATATC+CGG | + | chr5_4:25988353-25988372 | None:intergenic | 30.0% |
| !! | AAGTGTTGCCATTAATTTTG+AGG | - | chr5_4:25988451-25988470 | Msa0846240:intron | 30.0% |
| !! | TTGCCATTAATTTTGAGGAT+AGG | - | chr5_4:25988456-25988475 | Msa0846240:intron | 30.0% |
| CAATATTGCTTATCGATGAA+TGG | - | chr5_4:25988493-25988512 | Msa0846240:intron | 30.0% | |
| ! | TTTCTAAGAGTTTCTTGCAA+TGG | - | chr5_4:25988633-25988652 | Msa0846240:intron | 30.0% |
| TAAATACTCATTTAGTGGCA+TGG | - | chr5_4:25988731-25988750 | Msa0846240:intron | 30.0% | |
| ! | AGCTTGATAAGACATCATTT+TGG | - | chr5_4:25988817-25988836 | Msa0846240:intron | 30.0% |
| ! | GCTTGATAAGACATCATTTT+GGG | - | chr5_4:25988818-25988837 | Msa0846240:intron | 30.0% |
| CAGAACAAAGTATATACCTA+GGG | + | chr5_4:25988848-25988867 | None:intergenic | 30.0% | |
| TCAGAACAAAGTATATACCT+AGG | + | chr5_4:25988849-25988868 | None:intergenic | 30.0% | |
| TGATATGGAGGTTAAATTAG+AGG | + | chr5_4:25988890-25988909 | None:intergenic | 30.0% | |
| !! | ACAACTTTAGAATGATATGG+AGG | + | chr5_4:25988902-25988921 | None:intergenic | 30.0% |
| TAAATATGGATATTCTACCC+TGG | - | chr5_4:25989033-25989052 | Msa0846240:CDS | 30.0% | |
| GTCCAATGAAAGATATTACT+TGG | - | chr5_4:25989075-25989094 | Msa0846240:CDS | 30.0% | |
| CTCCAAGTAATATCTTTCAT+TGG | + | chr5_4:25989080-25989099 | None:intergenic | 30.0% | |
| GCCATACTATCCAAAAATAT+AGG | + | chr5_4:25989211-25989230 | None:intergenic | 30.0% | |
| CTATCCTAGTTTCGTTATTA+GGG | - | chr5_4:25989339-25989358 | Msa0846240:intron | 30.0% | |
| ATAAGACAATAGGTCATGTT+TGG | + | chr5_4:25989477-25989496 | None:intergenic | 30.0% | |
| CATGTTGCAGACAAATAAAA+AGG | + | chr5_4:25989625-25989644 | None:intergenic | 30.0% | |
| GAAATACAAGATAGCATTGT+GGG | + | chr5_4:25989722-25989741 | None:intergenic | 30.0% | |
| TGAAATACAAGATAGCATTG+TGG | + | chr5_4:25989723-25989742 | None:intergenic | 30.0% | |
| CTATCTTGTATTTCACATAG+CGG | - | chr5_4:25989728-25989747 | Msa0846240:intron | 30.0% | |
| !!! | TATTTCACATAGCGGATTTT+TGG | - | chr5_4:25989736-25989755 | Msa0846240:intron | 30.0% |
| !! | TAGTGGATTGCAGAAAATAA+AGG | + | chr5_4:25989766-25989785 | None:intergenic | 30.0% |
| !! | TTCTAAAGTTCCAATCAAGT+TGG | + | chr5_4:25989837-25989856 | None:intergenic | 30.0% |
| !!! | AAATAAGTTGCTTTTGGTGT+AGG | - | chr5_4:25989956-25989975 | Msa0846240:intron | 30.0% |
| ACTCCTCAAATTGAGAATTT+AGG | - | chr5_4:25990242-25990261 | Msa0846240:intron | 30.0% | |
| CTCCTCAAATTGAGAATTTA+GGG | - | chr5_4:25990243-25990262 | Msa0846240:intron | 30.0% | |
| ! | ATTTAGGGCGAAAATTGATT+CGG | - | chr5_4:25990258-25990277 | Msa0846240:intron | 30.0% |
| TTCTGTAATTGAGGATAAGA+GGG | - | chr5_4:25990457-25990476 | Msa0846240:intron | 30.0% | |
| AACGTTTCCCAAAAGTAAAA+GGG | + | chr5_4:25990786-25990805 | None:intergenic | 30.0% | |
| AAACGTTTCCCAAAAGTAAA+AGG | + | chr5_4:25990787-25990806 | None:intergenic | 30.0% | |
| ! | GGTGGATTTGTAATTCAAAA+AGG | - | chr5_4:25990890-25990909 | Msa0846240:intron | 30.0% |
| GCATACCTGAATTACAAAAA+GGG | + | chr5_4:25991087-25991106 | None:intergenic | 30.0% | |
| TGCATACCTGAATTACAAAA+AGG | + | chr5_4:25991088-25991107 | None:intergenic | 30.0% | |
| ! | TTTGCAATTTCAGGTGAAAA+AGG | - | chr5_4:25991492-25991511 | Msa0846240:intron | 30.0% |
| TACTGAAACCATAAAATCCA+AGG | + | chr5_4:25991578-25991597 | None:intergenic | 30.0% | |
| AATAACATGTCAGCAACATT+CGG | + | chr5_4:25991678-25991697 | None:intergenic | 30.0% | |
| AATCTTGTTGGATCGAAAAA+AGG | - | chr5_4:25991853-25991872 | Msa0846240:intron | 30.0% | |
| ! | TTGGTTGATATGCATCATAA+TGG | - | chr5_4:25991884-25991903 | Msa0846240:intron | 30.0% |
| ! | ATCATAATGGAACCCTAAAA+TGG | - | chr5_4:25991897-25991916 | Msa0846240:intron | 30.0% |
| AGAAATTGTGATGAGTTTCT+AGG | - | chr5_4:25992055-25992074 | Msa0846240:five_prime_UTR | 30.0% | |
| GATGCAAAGAAATAGAGTTT+GGG | + | chr5_4:25992126-25992145 | None:intergenic | 30.0% | |
| ! | AAGAATTTTGTAGGAAACCA+GGG | - | chr5_4:25992154-25992173 | Msa0846240:five_prime_UTR | 30.0% |
| !! | TTCATTTTTGTGTCAGAGGT+AGG | - | chr5_4:25987462-25987481 | Msa0846240:CDS | 35.0% |
| !! | TCATTTTTGTGTCAGAGGTA+GGG | - | chr5_4:25987463-25987482 | Msa0846240:CDS | 35.0% |
| TGGCATTCACATTTCATTTC+TGG | - | chr5_4:25987728-25987747 | Msa0846240:intron | 35.0% | |
| GGCATTCACATTTCATTTCT+GGG | - | chr5_4:25987729-25987748 | Msa0846240:intron | 35.0% | |
| !! | TTCATTTCTGGGATTACTAC+TGG | - | chr5_4:25987740-25987759 | Msa0846240:intron | 35.0% |
| CTTGGAGGAAGAAAAGTAAT+CGG | + | chr5_4:25987830-25987849 | None:intergenic | 35.0% | |
| ! | TTGTGGATTGTGAAATCTGT+TGG | - | chr5_4:25988098-25988117 | Msa0846240:intron | 35.0% |
| ! | TGTGGATTGTGAAATCTGTT+GGG | - | chr5_4:25988099-25988118 | Msa0846240:intron | 35.0% |
| !!! | AGTGGTTTTTGAAATTGTCC+TGG | - | chr5_4:25988162-25988181 | Msa0846240:CDS | 35.0% |
| !!! | GTGGTTTTTGAAATTGTCCT+GGG | - | chr5_4:25988163-25988182 | Msa0846240:CDS | 35.0% |
| !!! | TGGTTTTTGAAATTGTCCTG+GGG | - | chr5_4:25988164-25988183 | Msa0846240:CDS | 35.0% |
| TGTTCAATAAAAGGGATCTC+CGG | - | chr5_4:25988331-25988350 | Msa0846240:intron | 35.0% | |
| ! | CGGATATGCCCTTTTTAATA+AGG | - | chr5_4:25988351-25988370 | Msa0846240:intron | 35.0% |
| !! | TTATCGATGAATGGTTCTGA+TGG | - | chr5_4:25988502-25988521 | Msa0846240:intron | 35.0% |
| ATAATTTCCTGTAGGTTGTC+AGG | + | chr5_4:25988601-25988620 | None:intergenic | 35.0% | |
| GGTATTTCAGATATGTGACA+TGG | - | chr5_4:25988752-25988771 | Msa0846240:intron | 35.0% | |
| AATGATGTCTTATCAAGCTC+TGG | + | chr5_4:25988816-25988835 | None:intergenic | 35.0% | |
| TGAAAGATATTACTTGGAGC+AGG | - | chr5_4:25989081-25989100 | Msa0846240:CDS | 35.0% | |
| GCTATCCTAGTTTCGTTATT+AGG | - | chr5_4:25989338-25989357 | Msa0846240:intron | 35.0% | |
| TTGAATCAACTAGCAGAAAC+TGG | + | chr5_4:25989382-25989401 | None:intergenic | 35.0% | |
| ! | GTTTCTGCTAGTTGATTCAA+TGG | - | chr5_4:25989382-25989401 | Msa0846240:intron | 35.0% |
| ! | AGTTGATTCAATGGCAATAG+TGG | - | chr5_4:25989391-25989410 | Msa0846240:intron | 35.0% |
| GGCTTACATATATGGTGAAT+AGG | + | chr5_4:25989570-25989589 | None:intergenic | 35.0% | |
| AAAGGGAATAAAGCAGAACA+TGG | + | chr5_4:25989607-25989626 | None:intergenic | 35.0% | |
| GACTTATTTCAACTGCTATG+CGG | - | chr5_4:25989683-25989702 | Msa0846240:intron | 35.0% | |
| !! | AAGTTCCAATCAAGTTGGAA+AGG | + | chr5_4:25989832-25989851 | None:intergenic | 35.0% |
| !!! | CTACTTTTTGGAACCTATGT+TGG | + | chr5_4:25989986-25990005 | None:intergenic | 35.0% |
| TGAGTTTCTGTAGATCAAGT+GGG | + | chr5_4:25990190-25990209 | None:intergenic | 35.0% | |
| ACTGCATCTTAGATATGAGA+TGG | - | chr5_4:25990310-25990329 | Msa0846240:intron | 35.0% | |
| TAGATATGAGATGGACATGT+TGG | - | chr5_4:25990319-25990338 | Msa0846240:CDS | 35.0% | |
| CATTCTTGCTTCTGTAATTG+AGG | - | chr5_4:25990448-25990467 | Msa0846240:CDS | 35.0% | |
| CTTCTGTAATTGAGGATAAG+AGG | - | chr5_4:25990456-25990475 | Msa0846240:CDS | 35.0% | |
| AATTGAGGATAAGAGGGATT+TGG | - | chr5_4:25990463-25990482 | Msa0846240:intron | 35.0% | |
| TTGTAACGAAAAACCGTAGA+AGG | + | chr5_4:25990669-25990688 | None:intergenic | 35.0% | |
| AGTATTATCTCTTGTACACG+TGG | - | chr5_4:25990869-25990888 | Msa0846240:intron | 35.0% | |
| ! | ACTGTCCCTTTTTGTAATTC+AGG | - | chr5_4:25991079-25991098 | Msa0846240:intron | 35.0% |
| ! | AGGAGATAATTTCTGAAGAG+AGG | - | chr5_4:25991127-25991146 | Msa0846240:intron | 35.0% |
| TCACCAGCTGCAATATATAT+CGG | + | chr5_4:25991231-25991250 | None:intergenic | 35.0% | |
| TGTTGACAAACTCACAAGTT+GGG | + | chr5_4:25991301-25991320 | None:intergenic | 35.0% | |
| ATGTTGACAAACTCACAAGT+TGG | + | chr5_4:25991302-25991321 | None:intergenic | 35.0% | |
| ! | CATTTTTCTGCTCGTTGTTT+GGG | - | chr5_4:25991335-25991354 | Msa0846240:intron | 35.0% |
| ATTGTTCTTGCGCTCATTAA+TGG | - | chr5_4:25991378-25991397 | Msa0846240:intron | 35.0% | |
| GAAAATGCATCTTTCAGATC+AGG | + | chr5_4:25991409-25991428 | None:intergenic | 35.0% | |
| CTTTCTGTGTTTGCAATTTC+AGG | - | chr5_4:25991483-25991502 | Msa0846240:intron | 35.0% | |
| TGAAACCATAAAATCCAAGG+CGG | + | chr5_4:25991575-25991594 | None:intergenic | 35.0% | |
| ACCTTTATCCCTACTTATGA+TGG | - | chr5_4:25991607-25991626 | Msa0846240:CDS | 35.0% | |
| CCTTTATCCCTACTTATGAT+GGG | - | chr5_4:25991608-25991627 | Msa0846240:CDS | 35.0% | |
| ATAACATGTCAGCAACATTC+GGG | + | chr5_4:25991677-25991696 | None:intergenic | 35.0% | |
| TAACAGTGTAAGTGCATTGT+TGG | - | chr5_4:25991767-25991786 | Msa0846240:CDS | 35.0% | |
| !! | TAACTAATTTGTTCGTCTGC+AGG | - | chr5_4:25991810-25991829 | Msa0846240:five_prime_UTR | 35.0% |
| CAAGTTCATGAGAAGAGAAT+TGG | - | chr5_4:25991944-25991963 | Msa0846240:five_prime_UTR | 35.0% | |
| ! | ATTATAACTTTTCGCCGAGT+TGG | + | chr5_4:25991974-25991993 | None:intergenic | 35.0% |
| AGTTATAATCGACAGACCAA+AGG | - | chr5_4:25991985-25992004 | Msa0846240:five_prime_UTR | 35.0% | |
| ! | CAAGTATAGTATGAGTTGAG+AGG | - | chr5_4:25992094-25992113 | Msa0846240:five_prime_UTR | 35.0% |
| GGATGCAAAGAAATAGAGTT+TGG | + | chr5_4:25992127-25992146 | None:intergenic | 35.0% | |
| ! | CAAGAATTTTGTAGGAAACC+AGG | - | chr5_4:25992153-25992172 | Msa0846240:five_prime_UTR | 35.0% |
| AGGAAATATTTGTTCCACTG+AGG | - | chr5_4:25992202-25992221 | Msa0846240:five_prime_UTR | 35.0% | |
| AGAGAAGGAGAAGAAGAAAG+AGG | + | chr5_4:25987274-25987293 | None:intergenic | 40.0% | |
| TACGGAGAAAGATTGAGAGA+AGG | + | chr5_4:25987289-25987308 | None:intergenic | 40.0% | |
| GTTTCAATGAAGAGGCAATG+AGG | - | chr5_4:25987590-25987609 | Msa0846240:intron | 40.0% | |
| GAGGCAATGAGGATAAGAAA+TGG | - | chr5_4:25987601-25987620 | Msa0846240:intron | 40.0% | |
| GCAATGAGGATAAGAAATGG+AGG | - | chr5_4:25987604-25987623 | Msa0846240:intron | 40.0% | |
| AGAAATGGAGGTTAGATCAG+AGG | - | chr5_4:25987616-25987635 | Msa0846240:intron | 40.0% | |
| GAAATGGAGGTTAGATCAGA+GGG | - | chr5_4:25987617-25987636 | Msa0846240:intron | 40.0% | |
| !! | AGGGTATACGTTTGAGGTTT+TGG | - | chr5_4:25987636-25987655 | Msa0846240:intron | 40.0% |
| TAGTGACAGTGAGTGAACTA+TGG | - | chr5_4:25987708-25987727 | Msa0846240:intron | 40.0% | |
| GAGTCAAGAAACTAACTTGG+AGG | + | chr5_4:25987845-25987864 | None:intergenic | 40.0% | |
| !! | GATGAATGGTTCTGATGGAT+AGG | - | chr5_4:25988507-25988526 | Msa0846240:intron | 40.0% |
| CTAAGAGTTTCTTGCAATGG+TGG | - | chr5_4:25988636-25988655 | Msa0846240:intron | 40.0% | |
| ACTGCCCTAATAACGAAACT+AGG | + | chr5_4:25989346-25989365 | None:intergenic | 40.0% | |
| ACTAGCAGAAACTGGAATAG+CGG | + | chr5_4:25989374-25989393 | None:intergenic | 40.0% | |
| ATAGCATTGTGGGCAAATAG+TGG | + | chr5_4:25989712-25989731 | None:intergenic | 40.0% | |
| TGTGTCCTTTCCAACTTGAT+TGG | - | chr5_4:25989824-25989843 | Msa0846240:intron | 40.0% | |
| !!! | CTCAGTGAAGTGCTACTTTT+TGG | + | chr5_4:25989998-25990017 | None:intergenic | 40.0% |
| CAGTGTAGAGTCAATAGTGT+TGG | + | chr5_4:25990090-25990109 | None:intergenic | 40.0% | |
| ACCTTGTGCTTTCCATAAAG+CGG | + | chr5_4:25990122-25990141 | None:intergenic | 40.0% | |
| CTGAGTTTCTGTAGATCAAG+TGG | + | chr5_4:25990191-25990210 | None:intergenic | 40.0% | |
| CACTTGATCTACAGAAACTC+AGG | - | chr5_4:25990189-25990208 | Msa0846240:intron | 40.0% | |
| CGCCCTAAATTCTCAATTTG+AGG | + | chr5_4:25990248-25990267 | None:intergenic | 40.0% | |
| !!! | CCTCAATCTTTTGAGTTCCT+CGG | + | chr5_4:25990384-25990403 | None:intergenic | 40.0% |
| CAAGAATGAATTAGAAGCCG+AGG | + | chr5_4:25990436-25990455 | None:intergenic | 40.0% | |
| AAGAGGGATTTGGATCTTCT+CGG | - | chr5_4:25990473-25990492 | Msa0846240:intron | 40.0% | |
| CTTCTCGGTTTCTGAATAAC+AGG | - | chr5_4:25990488-25990507 | Msa0846240:intron | 40.0% | |
| ! | GCTCTGATAGAGAAACCTTT+TGG | - | chr5_4:25990547-25990566 | Msa0846240:intron | 40.0% |
| ATTATCTCTTGTACACGTGG+TGG | - | chr5_4:25990872-25990891 | Msa0846240:intron | 40.0% | |
| AATTCAGGTATGCATTCCCT+TGG | - | chr5_4:25991094-25991113 | Msa0846240:intron | 40.0% | |
| ACACCGATATATATTGCAGC+TGG | - | chr5_4:25991225-25991244 | Msa0846240:intron | 40.0% | |
| ATTGCAGCTGGTGAGATTTA+TGG | - | chr5_4:25991237-25991256 | Msa0846240:intron | 40.0% | |
| GTTGACAAACTCACAAGTTG+GGG | + | chr5_4:25991300-25991319 | None:intergenic | 40.0% | |
| ACAACGAGCAGAAAAATGGA+AGG | + | chr5_4:25991333-25991352 | None:intergenic | 40.0% | |
| CCAAACAACGAGCAGAAAAA+TGG | + | chr5_4:25991337-25991356 | None:intergenic | 40.0% | |
| !! | CCATTTTTCTGCTCGTTGTT+TGG | - | chr5_4:25991334-25991353 | Msa0846240:intron | 40.0% |
| TTCTTGCGCTCATTAATGGT+TGG | - | chr5_4:25991382-25991401 | Msa0846240:intron | 40.0% | |
| CCCATCATAAGTAGGGATAA+AGG | + | chr5_4:25991611-25991630 | None:intergenic | 40.0% | |
| CCATGTTCCCATCATAAGTA+GGG | + | chr5_4:25991618-25991637 | None:intergenic | 40.0% | |
| GGGTAAATACATACCTTCGA+TGG | + | chr5_4:25991657-25991676 | None:intergenic | 40.0% | |
| TCGAAAAAAGGTCGTGGAAT+TGG | - | chr5_4:25991865-25991884 | Msa0846240:intron | 40.0% | |
| TATAATCGACAGACCAAAGG+AGG | - | chr5_4:25991988-25992007 | Msa0846240:five_prime_UTR | 40.0% | |
| TAGAAATAGTCCTCCTCCTT+TGG | + | chr5_4:25992004-25992023 | None:intergenic | 40.0% | |
| !!! | TACACTTTTTTCAGCTACCC+TGG | + | chr5_4:25992174-25992193 | None:intergenic | 40.0% |
| ! | GATCAGAGGGTATACGTTTG+AGG | - | chr5_4:25987630-25987649 | Msa0846240:intron | 45.0% |
| GGAAGAAAAGTAATCGGAGG+CGG | + | chr5_4:25987824-25987843 | None:intergenic | 45.0% | |
| GGAGGAAGAAAAGTAATCGG+AGG | + | chr5_4:25987827-25987846 | None:intergenic | 45.0% | |
| TCTTTGACCTGACAACCTAC+AGG | - | chr5_4:25988591-25988610 | Msa0846240:intron | 45.0% | |
| CTTGAATCAAATGCGTGCTG+CGG | - | chr5_4:25988659-25988678 | Msa0846240:intron | 45.0% | |
| CTTTCATTGGACCAGCTAAC+AGG | + | chr5_4:25989067-25989086 | None:intergenic | 45.0% | |
| GCACTGTTGTCAAATAGCAG+CGG | - | chr5_4:25989265-25989284 | Msa0846240:CDS | 45.0% | |
| TGGTGTAGGATAGCCAACAT+AGG | - | chr5_4:25989970-25989989 | Msa0846240:intron | 45.0% | |
| GACGCACGTCTAGCAAATAA+CGG | - | chr5_4:25990161-25990180 | Msa0846240:intron | 45.0% | |
| ATTCGGATGCTTCACGAGAA+GGG | - | chr5_4:25990275-25990294 | Msa0846240:intron | 45.0% | |
| CTAAGATGCAGTGCCACAAA+AGG | + | chr5_4:25990302-25990321 | None:intergenic | 45.0% | |
| !! | ATGGACATGTTGGCTTTCTC+AGG | - | chr5_4:25990329-25990348 | Msa0846240:CDS | 45.0% |
| ! | GCTTTCTCAGGTTGTACTCA+GGG | - | chr5_4:25990341-25990360 | Msa0846240:CDS | 45.0% |
| CCGAGGAACTCAAAAGATTG+AGG | - | chr5_4:25990381-25990400 | Msa0846240:CDS | 45.0% | |
| ATGAATTAGAAGCCGAGGCA+TGG | + | chr5_4:25990431-25990450 | None:intergenic | 45.0% | |
| CCACTACTCTCGTATCCAAA+AGG | + | chr5_4:25990565-25990584 | None:intergenic | 45.0% | |
| ! | CCTTTTGGATACGAGAGTAG+TGG | - | chr5_4:25990562-25990581 | Msa0846240:intron | 45.0% |
| ATTCCCTTGGTGGAGAGAAA+AGG | - | chr5_4:25991107-25991126 | Msa0846240:intron | 45.0% | |
| ! | TCTCCTTTTCTCTCCACCAA+GGG | + | chr5_4:25991113-25991132 | None:intergenic | 45.0% |
| ! | ATCTCCTTTTCTCTCCACCA+AGG | + | chr5_4:25991114-25991133 | None:intergenic | 45.0% |
| ! | TTCTGAAGAGAGGAGATCAC+AGG | - | chr5_4:25991137-25991156 | Msa0846240:intron | 45.0% |
| TCTGAAGAGAGGAGATCACA+GGG | - | chr5_4:25991138-25991157 | Msa0846240:intron | 45.0% | |
| ATGTCCTTTGACACCAGAAG+AGG | - | chr5_4:25991164-25991183 | Msa0846240:intron | 45.0% | |
| ACCTAAGGCTCGAAGAACTA+AGG | + | chr5_4:25991193-25991212 | None:intergenic | 45.0% | |
| ! | GTTCTTCGAGCCTTAGGTTT+TGG | - | chr5_4:25991195-25991214 | Msa0846240:intron | 45.0% |
| !! | TTCGAGCCTTAGGTTTTGGT+AGG | - | chr5_4:25991199-25991218 | Msa0846240:intron | 45.0% |
| !! | TCGAGCCTTAGGTTTTGGTA+GGG | - | chr5_4:25991200-25991219 | Msa0846240:intron | 45.0% |
| TGTCTCCCTACCAAAACCTA+AGG | + | chr5_4:25991208-25991227 | None:intergenic | 45.0% | |
| AGATTTATGGCGGTGAACGT+AGG | - | chr5_4:25991250-25991269 | Msa0846240:intron | 45.0% | |
| !! | AGTAGGGATAAAGGTGTCAC+TGG | + | chr5_4:25991602-25991621 | None:intergenic | 45.0% |
| ! | CCCTACTTATGATGGGAACA+TGG | - | chr5_4:25991615-25991634 | Msa0846240:CDS | 45.0% |
| GCCATGTTCCCATCATAAGT+AGG | + | chr5_4:25991619-25991638 | None:intergenic | 45.0% | |
| GTTGGATCGAAAAAAGGTCG+TGG | - | chr5_4:25991859-25991878 | Msa0846240:intron | 45.0% | |
| !!! | CGCAAACTCGTGCCATTTTA+GGG | + | chr5_4:25991912-25991931 | None:intergenic | 45.0% |
| CCTAAAATGGCACGAGTTTG+CGG | - | chr5_4:25991910-25991929 | Msa0846240:intron | 45.0% | |
| AGAGAATTGGACAGCCAACT+CGG | - | chr5_4:25991957-25991976 | Msa0846240:five_prime_UTR | 45.0% | |
| ACATAGACACTCATGAGGGT+TGG | + | chr5_4:25992029-25992048 | None:intergenic | 45.0% | |
| CCTCACATAGACACTCATGA+GGG | + | chr5_4:25992033-25992052 | None:intergenic | 45.0% | |
| TCCTCACATAGACACTCATG+AGG | + | chr5_4:25992034-25992053 | None:intergenic | 45.0% | |
| !! | GTATTATAATTAAATAATAA+CGG | - | chr5_4:25988240-25988259 | Msa0846240:CDS | 5.0% |
| ! | CATCATTTTGGGCAGACCCT+AGG | - | chr5_4:25988829-25988848 | Msa0846240:intron | 50.0% |
| TCATTGGACCAGCTAACAGG+AGG | + | chr5_4:25989064-25989083 | None:intergenic | 50.0% | |
| !! | CTGCAGATTCTGCCGCTTTA+TGG | - | chr5_4:25990107-25990126 | Msa0846240:intron | 50.0% |
| ! | GCCGCTTTATGGAAAGCACA+AGG | - | chr5_4:25990118-25990137 | Msa0846240:intron | 50.0% |
| ! | CAGGTGTCGTGTCAATTACG+AGG | - | chr5_4:25990208-25990227 | Msa0846240:intron | 50.0% |
| GATTCGGATGCTTCACGAGA+AGG | - | chr5_4:25990274-25990293 | Msa0846240:intron | 50.0% | |
| ! | TCACGAGAAGGGACCTTTTG+TGG | - | chr5_4:25990286-25990305 | Msa0846240:intron | 50.0% |
| ! | GGCTTTCTCAGGTTGTACTC+AGG | - | chr5_4:25990340-25990359 | Msa0846240:CDS | 50.0% |
| TTGCTCAGAGAAAGAAGCCG+AGG | - | chr5_4:25990364-25990383 | Msa0846240:CDS | 50.0% | |
| ! | TCATGTTTGGCTCCATGCCT+CGG | - | chr5_4:25990416-25990435 | Msa0846240:CDS | 50.0% |
| TCAGGTATGCATTCCCTTGG+TGG | - | chr5_4:25991097-25991116 | Msa0846240:intron | 50.0% | |
| TCCTTTGACACCAGAAGAGG+CGG | - | chr5_4:25991167-25991186 | Msa0846240:intron | 50.0% | |
| ! | GCCTTAGTTCTTCGAGCCTT+AGG | - | chr5_4:25991189-25991208 | Msa0846240:intron | 50.0% |
| GCAGCTGGTGAGATTTATGG+CGG | - | chr5_4:25991240-25991259 | Msa0846240:intron | 50.0% | |
| CCATCTGCGATGAGTGATTC+TGG | + | chr5_4:25991552-25991571 | None:intergenic | 50.0% | |
| CCAGAATCACTCATCGCAGA+TGG | - | chr5_4:25991549-25991568 | Msa0846240:intron | 50.0% | |
| ! | GATGGCCGCCTTGGATTTTA+TGG | - | chr5_4:25991567-25991586 | Msa0846240:CDS | 50.0% |
| !!! | CCGCAAACTCGTGCCATTTT+AGG | + | chr5_4:25991913-25991932 | None:intergenic | 50.0% |
| AAATGGCACGAGTTTGCGGA+TGG | - | chr5_4:25991914-25991933 | Msa0846240:intron | 50.0% | |
| AATCGACAGACCAAAGGAGG+AGG | - | chr5_4:25991991-25992010 | Msa0846240:five_prime_UTR | 50.0% | |
| CCCTCATGAGTGTCTATGTG+AGG | - | chr5_4:25992030-25992049 | Msa0846240:five_prime_UTR | 50.0% | |
| GCATATTCTGCAAGCCTCAG+TGG | + | chr5_4:25992219-25992238 | None:intergenic | 50.0% | |
| !! | GCTAACAGGAGGCATCTCCA+GGG | + | chr5_4:25989053-25989072 | None:intergenic | 55.0% |
| !! | AGCTAACAGGAGGCATCTCC+AGG | + | chr5_4:25989054-25989073 | None:intergenic | 55.0% |
| TGGAGATGCCTCCTGTTAGC+TGG | - | chr5_4:25989053-25989072 | Msa0846240:CDS | 55.0% | |
| AGAACTAAGGCCGCCTCTTC+TGG | + | chr5_4:25991180-25991199 | None:intergenic | 55.0% | |
| ! | GCCGCCTCTTCTGGTGTCAA+AGG | + | chr5_4:25991171-25991190 | None:intergenic | 60.0% |
| CTCATCGCAGATGGCCGCCT+TGG | - | chr5_4:25991558-25991577 | Msa0846240:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 25987146 | 25992269 | 25987146 | ID=Msa0846240;Name=Msa0846240 |
| chr5_4 | mRNA | 25987146 | 25992269 | 25987146 | ID=Msa0846240-mRNA-1;Parent=Msa0846240;Name=Msa0846240-mRNA-1;_AED=0.07;_eAED=0.07;_QI=372|1|1|1|0.87|0.77|9|167|490 |
| chr5_4 | exon | 25987146 | 25987583 | 25987146 | ID=Msa0846240-mRNA-1:exon:10260;Parent=Msa0846240-mRNA-1 |
| chr5_4 | exon | 25987753 | 25987910 | 25987753 | ID=Msa0846240-mRNA-1:exon:10259;Parent=Msa0846240-mRNA-1 |
| chr5_4 | exon | 25988110 | 25988314 | 25988110 | ID=Msa0846240-mRNA-1:exon:10258;Parent=Msa0846240-mRNA-1 |
| chr5_4 | exon | 25989013 | 25989302 | 25989013 | ID=Msa0846240-mRNA-1:exon:10257;Parent=Msa0846240-mRNA-1 |
| chr5_4 | exon | 25990313 | 25990475 | 25990313 | ID=Msa0846240-mRNA-1:exon:10256;Parent=Msa0846240-mRNA-1 |
| chr5_4 | exon | 25990565 | 25990653 | 25990565 | ID=Msa0846240-mRNA-1:exon:10255;Parent=Msa0846240-mRNA-1 |
| chr5_4 | exon | 25990735 | 25990802 | 25990735 | ID=Msa0846240-mRNA-1:exon:10254;Parent=Msa0846240-mRNA-1 |
| chr5_4 | exon | 25991567 | 25991833 | 25991567 | ID=Msa0846240-mRNA-1:exon:10253;Parent=Msa0846240-mRNA-1 |
| chr5_4 | exon | 25991936 | 25992269 | 25991936 | ID=Msa0846240-mRNA-1:exon:10252;Parent=Msa0846240-mRNA-1 |
| chr5_4 | five_prime_UTR | 25991936 | 25992269 | 25991936 | ID=Msa0846240-mRNA-1:five_prime_utr;Parent=Msa0846240-mRNA-1 |
| chr5_4 | five_prime_UTR | 25991796 | 25991833 | 25991796 | ID=Msa0846240-mRNA-1:five_prime_utr;Parent=Msa0846240-mRNA-1 |
| chr5_4 | CDS | 25991567 | 25991795 | 25991567 | ID=Msa0846240-mRNA-1:cds;Parent=Msa0846240-mRNA-1 |
| chr5_4 | CDS | 25990735 | 25990802 | 25990735 | ID=Msa0846240-mRNA-1:cds;Parent=Msa0846240-mRNA-1 |
| chr5_4 | CDS | 25990565 | 25990653 | 25990565 | ID=Msa0846240-mRNA-1:cds;Parent=Msa0846240-mRNA-1 |
| chr5_4 | CDS | 25990313 | 25990475 | 25990313 | ID=Msa0846240-mRNA-1:cds;Parent=Msa0846240-mRNA-1 |
| chr5_4 | CDS | 25989013 | 25989302 | 25989013 | ID=Msa0846240-mRNA-1:cds;Parent=Msa0846240-mRNA-1 |
| chr5_4 | CDS | 25988110 | 25988314 | 25988110 | ID=Msa0846240-mRNA-1:cds;Parent=Msa0846240-mRNA-1 |
| chr5_4 | CDS | 25987753 | 25987910 | 25987753 | ID=Msa0846240-mRNA-1:cds;Parent=Msa0846240-mRNA-1 |
| chr5_4 | CDS | 25987313 | 25987583 | 25987313 | ID=Msa0846240-mRNA-1:cds;Parent=Msa0846240-mRNA-1 |
| chr5_4 | three_prime_UTR | 25987146 | 25987312 | 25987146 | ID=Msa0846240-mRNA-1:three_prime_utr;Parent=Msa0846240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
