Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768070 | sp|Q9M1J1|FIS1A_ARATH | 64.912 | 171 | 56 | 2 | 4 | 171 | 1 | 170 | 1.60e-75 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768070 | B7FH42 | 97.076 | 171 | 5 | 0 | 1 | 171 | 1 | 171 | 2.06e-115 | 333 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0768070 | Msa0822170 | 0.815854 | 7.468942e-52 | -8.615850e-47 |
| Msa0768070 | Msa0858440 | 0.803735 | 3.025549e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768070 | MtrunA17_Chr5g0442081 | 97.076 | 171 | 5 | 0 | 1 | 171 | 1 | 171 | 3.98e-119 | 333 |
| Msa0768070 | MtrunA17_Chr7g0256481 | 64.881 | 168 | 58 | 1 | 4 | 171 | 1 | 167 | 4.27e-78 | 229 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768070 | AT3G57090.2 | 64.912 | 171 | 56 | 2 | 4 | 171 | 1 | 170 | 1.63e-76 | 226 |
| Msa0768070 | AT3G57090.1 | 64.912 | 171 | 56 | 2 | 4 | 171 | 1 | 170 | 1.63e-76 | 226 |
| Msa0768070 | AT5G12390.1 | 53.801 | 171 | 69 | 3 | 4 | 169 | 1 | 166 | 2.74e-61 | 187 |
Find 73 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGATATAAACAAAATTT+TGG | 0.127400 | 5_2:-31947175 | None:intergenic |
| ATCCCACGCTGCACATCTTC+TGG | 0.273714 | 5_2:-31945058 | None:intergenic |
| TCCATTGTAGATGGTGTCAT+TGG | 0.337859 | 5_2:+31946700 | Msa0768070:intron |
| ACTGCTGTTGGACTGATTGC+AGG | 0.376159 | 5_2:+31946739 | Msa0768070:CDS |
| GGAAATTGCAATTACTAATA+CGG | 0.384889 | 5_2:-31947087 | None:intergenic |
| TTGTAATATTTCCCACCTAT+AGG | 0.384991 | 5_2:-31947211 | None:intergenic |
| GGCATTGCTGCAACTGCTGT+TGG | 0.387526 | 5_2:+31946727 | Msa0768070:CDS |
| GTAATTGCAATTTCCAACTT+TGG | 0.388095 | 5_2:+31947095 | Msa0768070:three_prime_UTR |
| AAGGGAGAAGCTTTATCTTC+TGG | 0.399111 | 5_2:+31945236 | Msa0768070:CDS |
| ACCTATGTATTGTCCAAAGT+TGG | 0.401547 | 5_2:-31947108 | None:intergenic |
| AAGCTTTATCTTCTGGCTGT+TGG | 0.406057 | 5_2:+31945243 | Msa0768070:CDS |
| TTCTGCAGATTGCACCCGAC+TGG | 0.410238 | 5_2:+31946509 | Msa0768070:intron |
| GTAGATGGTGTCATTGGCTT+GGG | 0.434800 | 5_2:+31946706 | Msa0768070:intron |
| AATCTCTCTTGCGTTTGTCA+TGG | 0.436952 | 5_2:+31945014 | Msa0768070:CDS |
| AAGGTTGGACAATTCTTCTC+TGG | 0.443060 | 5_2:+31944257 | Msa0768070:CDS |
| CTGCATCTTACTGTTTCTAA+AGG | 0.449396 | 5_2:+31946869 | Msa0768070:three_prime_UTR |
| ATCTCTCTTGCGTTTGTCAT+GGG | 0.453204 | 5_2:+31945015 | Msa0768070:CDS |
| TCTCAGTAGAATCGAATTGA+AGG | 0.456375 | 5_2:+31944188 | Msa0768070:five_prime_UTR |
| TCAACAAGTTCCCTGCTCCT+TGG | 0.459423 | 5_2:-31945288 | None:intergenic |
| GATAGCAGCTAATATGTAAG+AGG | 0.461383 | 5_2:+31946820 | Msa0768070:three_prime_UTR |
| GAACGTACAGCGATGACATC+GGG | 0.469315 | 5_2:-31944305 | None:intergenic |
| GACAATGCCTGCCTCCAGTC+GGG | 0.470248 | 5_2:-31946523 | None:intergenic |
| TGTAGATGGTGTCATTGGCT+TGG | 0.474347 | 5_2:+31946705 | Msa0768070:intron |
| GATTGCACCCGACTGGAGGC+AGG | 0.476886 | 5_2:+31946516 | Msa0768070:intron |
| TTCAGCGGGTCAACAGTACT+AGG | 0.476932 | 5_2:-31945210 | None:intergenic |
| CTATCATATGTTTAACAGAA+AGG | 0.481045 | 5_2:-31946802 | None:intergenic |
| TATTCTTACATCATTATTCA+AGG | 0.481241 | 5_2:-31947063 | None:intergenic |
| TGATTGCATCATAAGAAAGA+TGG | 0.481351 | 5_2:-31947003 | None:intergenic |
| TCGAATTGAAGGTTTATCAA+TGG | 0.483677 | 5_2:+31944199 | Msa0768070:exon |
| ACATGAAAGATCATACCTAT+AGG | 0.483729 | 5_2:+31947196 | Msa0768070:three_prime_UTR |
| GATTGCATCATAAGAAAGAT+GGG | 0.489344 | 5_2:-31947002 | None:intergenic |
| GTGGTGACTATCCAAGGAGC+AGG | 0.500848 | 5_2:+31945277 | Msa0768070:CDS |
| CTGTTGACCCGCTGAAACAA+AGG | 0.503825 | 5_2:+31945217 | Msa0768070:CDS |
| GCTTCTCCCTTTGTTTCAGC+GGG | 0.505342 | 5_2:-31945224 | None:intergenic |
| GAGGCAGGCATTGTCACTTA+AGG | 0.506054 | 5_2:+31946531 | Msa0768070:CDS |
| CTCGAGAGTCGGATAACAAA+AGG | 0.510881 | 5_2:+31946559 | Msa0768070:CDS |
| AGCTTCTCCCTTTGTTTCAG+CGG | 0.511901 | 5_2:-31945225 | None:intergenic |
| ATCTTACTGTTTCTAAAGGA+AGG | 0.518735 | 5_2:+31946873 | Msa0768070:three_prime_UTR |
| TGAAGAGCCTCATCAGAGGC+AGG | 0.526506 | 5_2:-31944989 | None:intergenic |
| AGCGATGACATCGGGATCGC+AGG | 0.530157 | 5_2:-31944297 | None:intergenic |
| CGGGATCGCAGGAGGGAAGA+AGG | 0.535106 | 5_2:-31944286 | None:intergenic |
| GCGAAACTCGAAGCTAAGCT+AGG | 0.546048 | 5_2:+31944221 | Msa0768070:CDS |
| TCCAACTTTGGACAATACAT+AGG | 0.555003 | 5_2:+31947107 | Msa0768070:three_prime_UTR |
| ACAAAAGTGGTGACTATCCA+AGG | 0.557710 | 5_2:+31945271 | Msa0768070:CDS |
| TGTTGACCCGCTGAAACAAA+GGG | 0.572533 | 5_2:+31945218 | Msa0768070:CDS |
| TGAAAGATCATACCTATAGG+TGG | 0.581626 | 5_2:+31947199 | Msa0768070:three_prime_UTR |
| TGCAGATTGCACCCGACTGG+AGG | 0.583218 | 5_2:+31946512 | Msa0768070:intron |
| TGACAATGCCTGCCTCCAGT+CGG | 0.588613 | 5_2:-31946524 | None:intergenic |
| GGAACGTACAGCGATGACAT+CGG | 0.589361 | 5_2:-31944306 | None:intergenic |
| GTCCAGAAGATGTGCAGCGT+GGG | 0.591172 | 5_2:+31945056 | Msa0768070:CDS |
| TTAAGGAGGCACTCGAGAGT+CGG | 0.591317 | 5_2:+31946548 | Msa0768070:CDS |
| GGAATGATCGTTGACAAGGT+TGG | 0.592286 | 5_2:+31944242 | Msa0768070:CDS |
| CTGTTGGACTGATTGCAGGT+GGG | 0.593120 | 5_2:+31946743 | Msa0768070:CDS |
| GCTGTTGGATATTACAAAAG+TGG | 0.606088 | 5_2:+31945258 | Msa0768070:CDS |
| GCTGTTGGACTGATTGCAGG+TGG | 0.612703 | 5_2:+31946742 | Msa0768070:CDS |
| AAATAAAGACATCTGTGTGA+GGG | 0.616810 | 5_2:+31947146 | Msa0768070:three_prime_UTR |
| GAAAGATCATACCTATAGGT+GGG | 0.617472 | 5_2:+31947200 | Msa0768070:three_prime_UTR |
| GAAACAACCTGCCTCTGATG+AGG | 0.620184 | 5_2:+31944982 | Msa0768070:CDS |
| GCTAGGAATGATCGTTGACA+AGG | 0.626660 | 5_2:+31944238 | Msa0768070:CDS |
| GAAATAAAGACATCTGTGTG+AGG | 0.627674 | 5_2:+31947145 | Msa0768070:three_prime_UTR |
| GCAGGCATTGTCACTTAAGG+AGG | 0.638672 | 5_2:+31946534 | Msa0768070:CDS |
| GATGACATCGGGATCGCAGG+AGG | 0.639787 | 5_2:-31944294 | None:intergenic |
| ATGACATCGGGATCGCAGGA+GGG | 0.643592 | 5_2:-31944293 | None:intergenic |
| TTCTTGAAGAGCCTCATCAG+AGG | 0.644439 | 5_2:-31944993 | None:intergenic |
| CAATGATGTGTACAAAGTGG+TGG | 0.648230 | 5_2:+31946902 | Msa0768070:three_prime_UTR |
| CGTCCAGAAGATGTGCAGCG+TGG | 0.656540 | 5_2:+31945055 | Msa0768070:CDS |
| TATGTAGGGATGTGAAAGAG+AGG | 0.657578 | 5_2:+31944946 | Msa0768070:intron |
| TGTCATCTATTCTAGTGCTG+CGG | 0.658249 | 5_2:+31947256 | Msa0768070:three_prime_UTR |
| TGGTGACTATCCAAGGAGCA+GGG | 0.673942 | 5_2:+31945278 | Msa0768070:CDS |
| ATTGCATCATAAGAAAGATG+GGG | 0.678664 | 5_2:-31947001 | None:intergenic |
| ATGTGAAAGAGAGGTCGCTG+AGG | 0.708233 | 5_2:+31944955 | Msa0768070:CDS |
| ACTTGTTGAGAAATGCCTAG+AGG | 0.739130 | 5_2:+31945302 | Msa0768070:CDS |
| AAACAATGATGTGTACAAAG+TGG | 0.739375 | 5_2:+31946899 | Msa0768070:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTTGAAAATATTGTA+AGG | - | chr5_2:31945503-31945522 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTTTTTGG+TGG | - | chr5_2:31945764-31945783 | None:intergenic | 10.0% |
| !!! | TTCAAATTTTACTTTATATG+TGG | + | chr5_2:31945512-31945531 | Msa0768070:intron | 15.0% |
| !!! | TCAAATTTTACTTTATATGT+GGG | + | chr5_2:31945513-31945532 | Msa0768070:intron | 15.0% |
| !! | AAAATTCAAAACATTATCTT+CGG | - | chr5_2:31945624-31945643 | None:intergenic | 15.0% |
| !!! | GAAAATGCATTTTAAAAATT+CGG | - | chr5_2:31945650-31945669 | None:intergenic | 15.0% |
| !!! | CTAATATTTCATTTTATTAG+AGG | + | chr5_2:31945799-31945818 | Msa0768070:intron | 15.0% |
| !!! | AACAATATTCATTTTATTAG+AGG | + | chr5_2:31945851-31945870 | Msa0768070:intron | 15.0% |
| !! | TATAAATTTCAAATAAACAG+CGG | - | chr5_2:31946304-31946323 | None:intergenic | 15.0% |
| !!! | TGTTTATTTGAAATTTATAG+AGG | + | chr5_2:31946305-31946324 | Msa0768070:intron | 15.0% |
| !!! | GTTTGATATAAACAAAATTT+TGG | - | chr5_2:31947178-31947197 | None:intergenic | 15.0% |
| !!! | ACTTATTTGAGTTTAGTTAT+GGG | + | chr5_2:31944753-31944772 | Msa0768070:intron | 20.0% |
| !! | TAAACTATTTGTACAACAAA+AGG | - | chr5_2:31944861-31944880 | None:intergenic | 20.0% |
| !!! | GATGTGATTTTTTCTATAAA+AGG | - | chr5_2:31945409-31945428 | None:intergenic | 20.0% |
| !! | TTTATAGAAAAAATCACATC+CGG | + | chr5_2:31945409-31945428 | Msa0768070:intron | 20.0% |
| !!! | TTTTTTTTTTTTTTTGGTGG+TGG | - | chr5_2:31945761-31945780 | None:intergenic | 20.0% |
| !!! | TTTCATTTTATTAGAGGAAA+TGG | + | chr5_2:31945805-31945824 | Msa0768070:intron | 20.0% |
| !! | GAAACATTTATTTGATGAAA+TGG | + | chr5_2:31945827-31945846 | Msa0768070:intron | 20.0% |
| !!! | ATTCATTTTATTAGAGGAAA+TGG | + | chr5_2:31945857-31945876 | Msa0768070:intron | 20.0% |
| !! | TTCACAAATATAATAAAGTG+CGG | - | chr5_2:31945942-31945961 | None:intergenic | 20.0% |
| !! | TTATCTTCACTTAGAATTAA+TGG | - | chr5_2:31946395-31946414 | None:intergenic | 20.0% |
| !! | AATTGGAATGAAAAATTTGA+TGG | - | chr5_2:31946424-31946443 | None:intergenic | 20.0% |
| !! | TATTCTTACATCATTATTCA+AGG | - | chr5_2:31947066-31947085 | None:intergenic | 20.0% |
| !! | TGGGAAATATTACAAAAATT+TGG | + | chr5_2:31947219-31947238 | Msa0768070:three_prime_UTR | 20.0% |
| ! | AAACAGAAACCCTAAAAAAA+GGG | - | chr5_2:31944355-31944374 | None:intergenic | 25.0% |
| ! | AAAACAGAAACCCTAAAAAA+AGG | - | chr5_2:31944356-31944375 | None:intergenic | 25.0% |
| !! | GACTTATTTGAGTTTAGTTA+TGG | + | chr5_2:31944752-31944771 | Msa0768070:intron | 25.0% |
| ! | TAAGTAAAAGAGAGATAGAT+TGG | - | chr5_2:31945103-31945122 | None:intergenic | 25.0% |
| ! | ATAGTAAAATTACATGCGTA+TGG | + | chr5_2:31945176-31945195 | Msa0768070:intron | 25.0% |
| ! | TTATAGAAAAAATCACATCC+GGG | + | chr5_2:31945410-31945429 | Msa0768070:intron | 25.0% |
| !! | GGGAACATAATTTAAAACAA+TGG | - | chr5_2:31945445-31945464 | None:intergenic | 25.0% |
| ! | AGTTTCTCTGTCATAAATTA+GGG | - | chr5_2:31945466-31945485 | None:intergenic | 25.0% |
| ! | TAATTTATGACAGAGAAACT+GGG | + | chr5_2:31945466-31945485 | Msa0768070:intron | 25.0% |
| !! | AATTTTACTTTATATGTGGG+TGG | + | chr5_2:31945516-31945535 | Msa0768070:intron | 25.0% |
| !!! | TGTTTTTGAATATACAATGC+AGG | - | chr5_2:31946002-31946021 | None:intergenic | 25.0% |
| ! | ATAGATAAACATGATTCTTG+TGG | - | chr5_2:31946239-31946258 | None:intergenic | 25.0% |
| ! | GATTCACTATCTATATATCT+TGG | + | chr5_2:31946340-31946359 | Msa0768070:intron | 25.0% |
| ! | TTAGAATTAATGGTTGGATT+TGG | - | chr5_2:31946385-31946404 | None:intergenic | 25.0% |
| ! | CTATCATATGTTTAACAGAA+AGG | - | chr5_2:31946805-31946824 | None:intergenic | 25.0% |
| ! | GGAAATTGCAATTACTAATA+CGG | - | chr5_2:31947090-31947109 | None:intergenic | 25.0% |
| TCGAATTGAAGGTTTATCAA+TGG | + | chr5_2:31944199-31944218 | Msa0768070:exon | 30.0% | |
| !!! | TCAATCATCCCCTTTTTTTA+GGG | + | chr5_2:31944343-31944362 | Msa0768070:intron | 30.0% |
| AACAGAAACCCTAAAAAAAG+GGG | - | chr5_2:31944354-31944373 | None:intergenic | 30.0% | |
| GCTTATAAAAAAAGCTCTCT+AGG | + | chr5_2:31944805-31944824 | Msa0768070:intron | 30.0% | |
| AAATTGCATGTGTATAGCAA+TGG | + | chr5_2:31945148-31945167 | Msa0768070:intron | 30.0% | |
| !! | TCTTTGGCTTTAATGTTACT+TGG | + | chr5_2:31945337-31945356 | Msa0768070:intron | 30.0% |
| GTTTCTCTGTCATAAATTAG+GGG | - | chr5_2:31945465-31945484 | None:intergenic | 30.0% | |
| CAGTTTCTCTGTCATAAATT+AGG | - | chr5_2:31945467-31945486 | None:intergenic | 30.0% | |
| CTAATTTATGACAGAGAAAC+TGG | + | chr5_2:31945465-31945484 | Msa0768070:intron | 30.0% | |
| TTATTAGAGGAAATGGAAAC+AGG | + | chr5_2:31945812-31945831 | Msa0768070:intron | 30.0% | |
| TTTGAATATACAATGCAGGA+TGG | - | chr5_2:31945998-31946017 | None:intergenic | 30.0% | |
| !!! | TGTAAGTTTTGTTGTCTGTT+AGG | + | chr5_2:31946107-31946126 | Msa0768070:intron | 30.0% |
| CTTCACTTAGAATTAATGGT+TGG | - | chr5_2:31946391-31946410 | None:intergenic | 30.0% | |
| TGGAATGAAAAATTTGATGG+TGG | - | chr5_2:31946421-31946440 | None:intergenic | 30.0% | |
| ATTGATCTCAACATGATAAG+GGG | - | chr5_2:31946629-31946648 | None:intergenic | 30.0% | |
| CATTGATCTCAACATGATAA+GGG | - | chr5_2:31946630-31946649 | None:intergenic | 30.0% | |
| CTTATCATGTTGAGATCAAT+GGG | + | chr5_2:31946629-31946648 | Msa0768070:intron | 30.0% | |
| !! | ATCTTACTGTTTCTAAAGGA+AGG | + | chr5_2:31946873-31946892 | Msa0768070:three_prime_UTR | 30.0% |
| AAACAATGATGTGTACAAAG+TGG | + | chr5_2:31946899-31946918 | Msa0768070:three_prime_UTR | 30.0% | |
| ATTGCATCATAAGAAAGATG+GGG | - | chr5_2:31947004-31947023 | None:intergenic | 30.0% | |
| GATTGCATCATAAGAAAGAT+GGG | - | chr5_2:31947005-31947024 | None:intergenic | 30.0% | |
| TGATTGCATCATAAGAAAGA+TGG | - | chr5_2:31947006-31947025 | None:intergenic | 30.0% | |
| GTAATTGCAATTTCCAACTT+TGG | + | chr5_2:31947095-31947114 | Msa0768070:three_prime_UTR | 30.0% | |
| AAATAAAGACATCTGTGTGA+GGG | + | chr5_2:31947146-31947165 | Msa0768070:three_prime_UTR | 30.0% | |
| ACATGAAAGATCATACCTAT+AGG | + | chr5_2:31947196-31947215 | Msa0768070:three_prime_UTR | 30.0% | |
| TTGTAATATTTCCCACCTAT+AGG | - | chr5_2:31947214-31947233 | None:intergenic | 30.0% | |
| TCTCAGTAGAATCGAATTGA+AGG | + | chr5_2:31944188-31944207 | Msa0768070:five_prime_UTR | 35.0% | |
| AAAAAAGGGGATGATTGAGA+AGG | - | chr5_2:31944341-31944360 | None:intergenic | 35.0% | |
| !!! | CTCAATCATCCCCTTTTTTT+AGG | + | chr5_2:31944342-31944361 | Msa0768070:intron | 35.0% |
| TGATACTGACACAACTGTTT+GGG | - | chr5_2:31944691-31944710 | None:intergenic | 35.0% | |
| TTGATACTGACACAACTGTT+TGG | - | chr5_2:31944692-31944711 | None:intergenic | 35.0% | |
| TGAGCCTTGATTCTATATGT+AGG | + | chr5_2:31944931-31944950 | Msa0768070:intron | 35.0% | |
| GAGCCTTGATTCTATATGTA+GGG | + | chr5_2:31944932-31944951 | Msa0768070:intron | 35.0% | |
| CATCCCTACATATAGAATCA+AGG | - | chr5_2:31944938-31944957 | None:intergenic | 35.0% | |
| !!! | CTCTCTTTTACTTAACTTGC+AGG | + | chr5_2:31945109-31945128 | Msa0768070:intron | 35.0% |
| GCTGTTGGATATTACAAAAG+TGG | + | chr5_2:31945258-31945277 | Msa0768070:CDS | 35.0% | |
| AGAGAGAAAAACATACCTCT+AGG | - | chr5_2:31945320-31945339 | None:intergenic | 35.0% | |
| ! | GAGGTATGTTTTTCTCTCTT+TGG | + | chr5_2:31945321-31945340 | Msa0768070:intron | 35.0% |
| !! | AGGAACTGATGAAAGCATTA+AGG | - | chr5_2:31945389-31945408 | None:intergenic | 35.0% |
| AAACAATGGAAGAAAACACC+CGG | - | chr5_2:31945431-31945450 | None:intergenic | 35.0% | |
| !! | ATATGTGGGTGGATTACATT+TGG | + | chr5_2:31945527-31945546 | Msa0768070:intron | 35.0% |
| !! | GGTGGATTACATTTGGTTAT+GGG | + | chr5_2:31945534-31945553 | Msa0768070:intron | 35.0% |
| !!! | TTTTTTTTTTTGGTGGTGGC+CGG | - | chr5_2:31945757-31945776 | None:intergenic | 35.0% |
| ACAAACACCTTATACAACTG+GGG | - | chr5_2:31945909-31945928 | None:intergenic | 35.0% | |
| CACAAACACCTTATACAACT+GGG | - | chr5_2:31945910-31945929 | None:intergenic | 35.0% | |
| ACACAAACACCTTATACAAC+TGG | - | chr5_2:31945911-31945930 | None:intergenic | 35.0% | |
| ! | TATAATAAAGTGCGGTGCTA+GGG | - | chr5_2:31945934-31945953 | None:intergenic | 35.0% |
| ATATAATAAAGTGCGGTGCT+AGG | - | chr5_2:31945935-31945954 | None:intergenic | 35.0% | |
| !! | TGGTTCAAACACTCTGAAAT+AGG | + | chr5_2:31946205-31946224 | Msa0768070:intron | 35.0% |
| !! | GGTTCAAACACTCTGAAATA+GGG | + | chr5_2:31946206-31946225 | Msa0768070:intron | 35.0% |
| CAAATAAACAGCGGAATCAA+TGG | - | chr5_2:31946295-31946314 | None:intergenic | 35.0% | |
| TTAATGGTTGGATTTGGAGA+GGG | - | chr5_2:31946379-31946398 | None:intergenic | 35.0% | |
| ATTAATGGTTGGATTTGGAG+AGG | - | chr5_2:31946380-31946399 | None:intergenic | 35.0% | |
| ! | GTTAATGGATAGGTTGGAAT+TGG | - | chr5_2:31946441-31946460 | None:intergenic | 35.0% |
| !! | TTGTGTTGGTGTTAATGGAT+AGG | - | chr5_2:31946451-31946470 | None:intergenic | 35.0% |
| TAAATGATGCTGTGTTGTGT+TGG | - | chr5_2:31946465-31946484 | None:intergenic | 35.0% | |
| ATAAGGGGAAGAAAATGCAT+GGG | - | chr5_2:31946614-31946633 | None:intergenic | 35.0% | |
| CCATTGATCTCAACATGATA+AGG | - | chr5_2:31946631-31946650 | None:intergenic | 35.0% | |
| CCTTATCATGTTGAGATCAA+TGG | + | chr5_2:31946628-31946647 | Msa0768070:intron | 35.0% | |
| TTCTATTCCTCCATTGTAGA+TGG | + | chr5_2:31946691-31946710 | Msa0768070:intron | 35.0% | |
| GATAGCAGCTAATATGTAAG+AGG | + | chr5_2:31946820-31946839 | Msa0768070:three_prime_UTR | 35.0% | |
| !! | CTGCATCTTACTGTTTCTAA+AGG | + | chr5_2:31946869-31946888 | Msa0768070:three_prime_UTR | 35.0% |
| TGGGGAAAAATTGATGAAGA+GGG | - | chr5_2:31946986-31947005 | None:intergenic | 35.0% | |
| ATGGGGAAAAATTGATGAAG+AGG | - | chr5_2:31946987-31947006 | None:intergenic | 35.0% | |
| TCCAACTTTGGACAATACAT+AGG | + | chr5_2:31947107-31947126 | Msa0768070:three_prime_UTR | 35.0% | |
| ACCTATGTATTGTCCAAAGT+TGG | - | chr5_2:31947111-31947130 | None:intergenic | 35.0% | |
| GAAATAAAGACATCTGTGTG+AGG | + | chr5_2:31947145-31947164 | Msa0768070:three_prime_UTR | 35.0% | |
| TGAAAGATCATACCTATAGG+TGG | + | chr5_2:31947199-31947218 | Msa0768070:three_prime_UTR | 35.0% | |
| GAAAGATCATACCTATAGGT+GGG | + | chr5_2:31947200-31947219 | Msa0768070:three_prime_UTR | 35.0% | |
| AAGGTTGGACAATTCTTCTC+TGG | + | chr5_2:31944257-31944276 | Msa0768070:CDS | 40.0% | |
| TGATTGAGAAGGAAGAGAGT+AGG | - | chr5_2:31944330-31944349 | None:intergenic | 40.0% | |
| ATAGACTCTCAGTGCATGTT+TGG | - | chr5_2:31944725-31944744 | None:intergenic | 40.0% | |
| ACATGCACTGAGAGTCTATT+TGG | + | chr5_2:31944726-31944745 | Msa0768070:intron | 40.0% | |
| TAAGCACTTGTGAGACTCTT+TGG | + | chr5_2:31944778-31944797 | Msa0768070:intron | 40.0% | |
| AAGCACTTGTGAGACTCTTT+GGG | + | chr5_2:31944779-31944798 | Msa0768070:intron | 40.0% | |
| TATGTAGGGATGTGAAAGAG+AGG | + | chr5_2:31944946-31944965 | Msa0768070:intron | 40.0% | |
| AATCTCTCTTGCGTTTGTCA+TGG | + | chr5_2:31945014-31945033 | Msa0768070:CDS | 40.0% | |
| ATCTCTCTTGCGTTTGTCAT+GGG | + | chr5_2:31945015-31945034 | Msa0768070:CDS | 40.0% | |
| ! | AAGGGAGAAGCTTTATCTTC+TGG | + | chr5_2:31945236-31945255 | Msa0768070:CDS | 40.0% |
| ! | AAGCTTTATCTTCTGGCTGT+TGG | + | chr5_2:31945243-31945262 | Msa0768070:CDS | 40.0% |
| ACAAAAGTGGTGACTATCCA+AGG | + | chr5_2:31945271-31945290 | Msa0768070:CDS | 40.0% | |
| ! | ACTTGTTGAGAAATGCCTAG+AGG | + | chr5_2:31945302-31945321 | Msa0768070:CDS | 40.0% |
| !! | CTGATGAAAGCATTAAGGCT+CGG | - | chr5_2:31945384-31945403 | None:intergenic | 40.0% |
| !! | GGGTGGATTACATTTGGTTA+TGG | + | chr5_2:31945533-31945552 | Msa0768070:intron | 40.0% |
| CAACGCATGGTAATATGCAA+AGG | + | chr5_2:31945716-31945735 | Msa0768070:intron | 40.0% | |
| TGGTAATATGCAAAGGTCTG+AGG | + | chr5_2:31945723-31945742 | Msa0768070:intron | 40.0% | |
| !!! | TTTTTTTTTTGGTGGTGGCC+GGG | - | chr5_2:31945756-31945775 | None:intergenic | 40.0% |
| ACAACTGGGGCTGATTATTT+CGG | - | chr5_2:31945896-31945915 | None:intergenic | 40.0% | |
| TAATCAGCCCCAGTTGTATA+AGG | + | chr5_2:31945899-31945918 | Msa0768070:intron | 40.0% | |
| ACCTTGAACATGTCCATTAG+TGG | + | chr5_2:31946175-31946194 | Msa0768070:intron | 40.0% | |
| ! | ACCACTAATGGACATGTTCA+AGG | - | chr5_2:31946179-31946198 | None:intergenic | 40.0% |
| TGTCCATTAGTGGTTGAAAC+TGG | + | chr5_2:31946185-31946204 | Msa0768070:intron | 40.0% | |
| GAACCAGTTTCAACCACTAA+TGG | - | chr5_2:31946191-31946210 | None:intergenic | 40.0% | |
| !! | GTTGGTGTTAATGGATAGGT+TGG | - | chr5_2:31946447-31946466 | None:intergenic | 40.0% |
| !! | CTGTGTTGTGTTGGTGTTAA+TGG | - | chr5_2:31946456-31946475 | None:intergenic | 40.0% |
| TAAGGGGAAGAAAATGCATG+GGG | - | chr5_2:31946613-31946632 | None:intergenic | 40.0% | |
| GATAAGGGGAAGAAAATGCA+TGG | - | chr5_2:31946615-31946634 | None:intergenic | 40.0% | |
| TCATGTTGAGATCAATGGGA+AGG | + | chr5_2:31946633-31946652 | Msa0768070:intron | 40.0% | |
| CATGTTGAGATCAATGGGAA+GGG | + | chr5_2:31946634-31946653 | Msa0768070:intron | 40.0% | |
| !! | AATGGGAAGGGACTTGTTTT+GGG | + | chr5_2:31946646-31946665 | Msa0768070:intron | 40.0% |
| AATGACACCATCTACAATGG+AGG | - | chr5_2:31946701-31946720 | None:intergenic | 40.0% | |
| !! | TCCATTGTAGATGGTGTCAT+TGG | + | chr5_2:31946700-31946719 | Msa0768070:intron | 40.0% |
| CAATGATGTGTACAAAGTGG+TGG | + | chr5_2:31946902-31946921 | Msa0768070:three_prime_UTR | 40.0% | |
| GGGAAAAATTGATGAAGAGG+GGG | - | chr5_2:31946984-31947003 | None:intergenic | 40.0% | |
| GGGGAAAAATTGATGAAGAG+GGG | - | chr5_2:31946985-31947004 | None:intergenic | 40.0% | |
| TGTCATCTATTCTAGTGCTG+CGG | + | chr5_2:31947256-31947275 | Msa0768070:three_prime_UTR | 40.0% | |
| !!! | CGGAGTCTTTTCTAGTTGTT+AGG | + | chr5_2:31947276-31947295 | Msa0768070:three_prime_UTR | 40.0% |
| GCTAGGAATGATCGTTGACA+AGG | + | chr5_2:31944238-31944257 | Msa0768070:CDS | 45.0% | |
| GGAATGATCGTTGACAAGGT+TGG | + | chr5_2:31944242-31944261 | Msa0768070:CDS | 45.0% | |
| CTCTCAGTGCATGTTTGGAT+TGG | - | chr5_2:31944720-31944739 | None:intergenic | 45.0% | |
| TTCTTGAAGAGCCTCATCAG+AGG | - | chr5_2:31944996-31945015 | None:intergenic | 45.0% | |
| !! | CATCTTCTGGACGTTTTGAG+TGG | - | chr5_2:31945048-31945067 | None:intergenic | 45.0% |
| TGTTGACCCGCTGAAACAAA+GGG | + | chr5_2:31945218-31945237 | Msa0768070:CDS | 45.0% | |
| ! | AGCTTCTCCCTTTGTTTCAG+CGG | - | chr5_2:31945228-31945247 | None:intergenic | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+GGG | + | chr5_2:31945692-31945711 | Msa0768070:intron | 45.0% |
| !!! | TTTTTTTTTGGTGGTGGCCG+GGG | - | chr5_2:31945755-31945774 | None:intergenic | 45.0% |
| CAACTGGGGCTGATTATTTC+GGG | - | chr5_2:31945895-31945914 | None:intergenic | 45.0% | |
| CTCGAGAGTCGGATAACAAA+AGG | + | chr5_2:31946559-31946578 | Msa0768070:CDS | 45.0% | |
| !! | CAATGGGAAGGGACTTGTTT+TGG | + | chr5_2:31946645-31946664 | Msa0768070:intron | 45.0% |
| GCCAATGACACCATCTACAA+TGG | - | chr5_2:31946704-31946723 | None:intergenic | 45.0% | |
| !! | TGTAGATGGTGTCATTGGCT+TGG | + | chr5_2:31946705-31946724 | Msa0768070:intron | 45.0% |
| !! | GTAGATGGTGTCATTGGCTT+GGG | + | chr5_2:31946706-31946725 | Msa0768070:intron | 45.0% |
| !!! | GAATTTTTTTTTTTTTTTTT+TGG | - | chr5_2:31945767-31945786 | None:intergenic | 5.0% |
| GCGAAACTCGAAGCTAAGCT+AGG | + | chr5_2:31944221-31944240 | Msa0768070:CDS | 50.0% | |
| GAACGTACAGCGATGACATC+GGG | - | chr5_2:31944308-31944327 | None:intergenic | 50.0% | |
| GGAACGTACAGCGATGACAT+CGG | - | chr5_2:31944309-31944328 | None:intergenic | 50.0% | |
| ATGTGAAAGAGAGGTCGCTG+AGG | + | chr5_2:31944955-31944974 | Msa0768070:CDS | 50.0% | |
| GAAACAACCTGCCTCTGATG+AGG | + | chr5_2:31944982-31945001 | Msa0768070:CDS | 50.0% | |
| TTCAGCGGGTCAACAGTACT+AGG | - | chr5_2:31945213-31945232 | None:intergenic | 50.0% | |
| CTGTTGACCCGCTGAAACAA+AGG | + | chr5_2:31945217-31945236 | Msa0768070:CDS | 50.0% | |
| ! | GCTTCTCCCTTTGTTTCAGC+GGG | - | chr5_2:31945227-31945246 | None:intergenic | 50.0% |
| TGGTGACTATCCAAGGAGCA+GGG | + | chr5_2:31945278-31945297 | Msa0768070:CDS | 50.0% | |
| TCAACAAGTTCCCTGCTCCT+TGG | - | chr5_2:31945291-31945310 | None:intergenic | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+AGG | + | chr5_2:31945691-31945710 | Msa0768070:intron | 50.0% | |
| ! | AAGGTCTGAGGTTCAAACCC+CGG | + | chr5_2:31945735-31945754 | Msa0768070:intron | 50.0% |
| ! | GAGGCAGGCATTGTCACTTA+AGG | + | chr5_2:31946531-31946550 | Msa0768070:CDS | 50.0% |
| ! | GCAGGCATTGTCACTTAAGG+AGG | + | chr5_2:31946534-31946553 | Msa0768070:CDS | 50.0% |
| !! | TTAAGGAGGCACTCGAGAGT+CGG | + | chr5_2:31946548-31946567 | Msa0768070:CDS | 50.0% |
| ACTGCTGTTGGACTGATTGC+AGG | + | chr5_2:31946739-31946758 | Msa0768070:CDS | 50.0% | |
| CTGTTGGACTGATTGCAGGT+GGG | + | chr5_2:31946743-31946762 | Msa0768070:CDS | 50.0% | |
| ATGACATCGGGATCGCAGGA+GGG | - | chr5_2:31944296-31944315 | None:intergenic | 55.0% | |
| TGAAGAGCCTCATCAGAGGC+AGG | - | chr5_2:31944992-31945011 | None:intergenic | 55.0% | |
| GTCCAGAAGATGTGCAGCGT+GGG | + | chr5_2:31945056-31945075 | Msa0768070:CDS | 55.0% | |
| ATCCCACGCTGCACATCTTC+TGG | - | chr5_2:31945061-31945080 | None:intergenic | 55.0% | |
| GTGGTGACTATCCAAGGAGC+AGG | + | chr5_2:31945277-31945296 | Msa0768070:CDS | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr5_2:31945690-31945709 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr5_2:31945687-31945706 | Msa0768070:intron | 55.0% | |
| !! | CAGTTGGTAGGGACAACGCA+TGG | + | chr5_2:31945703-31945722 | Msa0768070:intron | 55.0% |
| TTCTGCAGATTGCACCCGAC+TGG | + | chr5_2:31946509-31946528 | Msa0768070:intron | 55.0% | |
| TGACAATGCCTGCCTCCAGT+CGG | - | chr5_2:31946527-31946546 | None:intergenic | 55.0% | |
| GGCATTGCTGCAACTGCTGT+TGG | + | chr5_2:31946727-31946746 | Msa0768070:CDS | 55.0% | |
| GCTGTTGGACTGATTGCAGG+TGG | + | chr5_2:31946742-31946761 | Msa0768070:CDS | 55.0% | |
| GATGACATCGGGATCGCAGG+AGG | - | chr5_2:31944297-31944316 | None:intergenic | 60.0% | |
| AGCGATGACATCGGGATCGC+AGG | - | chr5_2:31944300-31944319 | None:intergenic | 60.0% | |
| CGTCCAGAAGATGTGCAGCG+TGG | + | chr5_2:31945055-31945074 | Msa0768070:CDS | 60.0% | |
| TGCAGATTGCACCCGACTGG+AGG | + | chr5_2:31946512-31946531 | Msa0768070:intron | 60.0% | |
| GACAATGCCTGCCTCCAGTC+GGG | - | chr5_2:31946526-31946545 | None:intergenic | 60.0% | |
| CGGGATCGCAGGAGGGAAGA+AGG | - | chr5_2:31944289-31944308 | None:intergenic | 65.0% | |
| GATTGCACCCGACTGGAGGC+AGG | + | chr5_2:31946516-31946535 | Msa0768070:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 31944104 | 31947327 | 31944104 | ID=Msa0768070;Name=Msa0768070 |
| chr5_2 | mRNA | 31944104 | 31947327 | 31944104 | ID=Msa0768070-mRNA-1;Parent=Msa0768070;Name=Msa0768070-mRNA-1;_AED=0.03;_eAED=0.03;_QI=93|1|1|1|0.8|0.66|6|532|171 |
| chr5_2 | exon | 31944104 | 31944151 | 31944104 | ID=Msa0768070-mRNA-1:exon:11684;Parent=Msa0768070-mRNA-1 |
| chr5_2 | exon | 31944173 | 31944319 | 31944173 | ID=Msa0768070-mRNA-1:exon:11685;Parent=Msa0768070-mRNA-1 |
| chr5_2 | exon | 31944953 | 31945094 | 31944953 | ID=Msa0768070-mRNA-1:exon:11686;Parent=Msa0768070-mRNA-1 |
| chr5_2 | exon | 31945202 | 31945323 | 31945202 | ID=Msa0768070-mRNA-1:exon:11687;Parent=Msa0768070-mRNA-1 |
| chr5_2 | exon | 31946517 | 31946580 | 31946517 | ID=Msa0768070-mRNA-1:exon:11688;Parent=Msa0768070-mRNA-1 |
| chr5_2 | exon | 31946710 | 31947327 | 31946710 | ID=Msa0768070-mRNA-1:exon:11689;Parent=Msa0768070-mRNA-1 |
| chr5_2 | five_prime_UTR | 31944104 | 31944151 | 31944104 | ID=Msa0768070-mRNA-1:five_prime_utr;Parent=Msa0768070-mRNA-1 |
| chr5_2 | five_prime_UTR | 31944173 | 31944217 | 31944173 | ID=Msa0768070-mRNA-1:five_prime_utr;Parent=Msa0768070-mRNA-1 |
| chr5_2 | CDS | 31944218 | 31944319 | 31944218 | ID=Msa0768070-mRNA-1:cds;Parent=Msa0768070-mRNA-1 |
| chr5_2 | CDS | 31944953 | 31945094 | 31944953 | ID=Msa0768070-mRNA-1:cds;Parent=Msa0768070-mRNA-1 |
| chr5_2 | CDS | 31945202 | 31945323 | 31945202 | ID=Msa0768070-mRNA-1:cds;Parent=Msa0768070-mRNA-1 |
| chr5_2 | CDS | 31946517 | 31946580 | 31946517 | ID=Msa0768070-mRNA-1:cds;Parent=Msa0768070-mRNA-1 |
| chr5_2 | CDS | 31946710 | 31946795 | 31946710 | ID=Msa0768070-mRNA-1:cds;Parent=Msa0768070-mRNA-1 |
| chr5_2 | three_prime_UTR | 31946796 | 31947327 | 31946796 | ID=Msa0768070-mRNA-1:three_prime_utr;Parent=Msa0768070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
