Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768550 | XP_003614161.1 | 99.753 | 405 | 1 | 0 | 1 | 405 | 1 | 405 | 0.0 | 830 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768550 | sp|Q9ZPR4|MRS25_ARATH | 64.394 | 396 | 131 | 4 | 17 | 404 | 27 | 420 | 5.81e-164 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768550 | G7JZ40 | 99.753 | 405 | 1 | 0 | 1 | 405 | 1 | 405 | 0.0 | 830 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0722930 | Msa0768550 | 0.819053 | 1.420881e-52 | -8.615850e-47 |
| Msa0723140 | Msa0768550 | 0.809899 | 1.506137e-50 | -8.615850e-47 |
| Msa0240780 | Msa0768550 | 0.819311 | 1.241386e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768550 | MtrunA17_Chr5g0419611 | 99.753 | 405 | 1 | 0 | 1 | 405 | 1 | 405 | 0.0 | 830 |
| Msa0768550 | MtrunA17_Chr2g0333971 | 52.941 | 425 | 152 | 5 | 20 | 404 | 31 | 447 | 3.69e-143 | 415 |
| Msa0768550 | MtrunA17_Chr5g0393831 | 40.092 | 434 | 207 | 8 | 19 | 403 | 14 | 443 | 3.38e-96 | 295 |
| Msa0768550 | MtrunA17_Chr8g0380621 | 39.900 | 401 | 182 | 9 | 32 | 403 | 50 | 420 | 1.96e-83 | 261 |
| Msa0768550 | MtrunA17_Chr1g0187901 | 40.806 | 397 | 187 | 6 | 31 | 403 | 16 | 388 | 5.82e-75 | 238 |
| Msa0768550 | MtrunA17_Chr8g0384941 | 36.952 | 433 | 198 | 10 | 22 | 405 | 18 | 424 | 7.13e-75 | 239 |
| Msa0768550 | MtrunA17_Chr1g0206981 | 34.813 | 428 | 226 | 8 | 22 | 403 | 3 | 423 | 2.99e-74 | 237 |
| Msa0768550 | MtrunA17_Chr1g0165841 | 38.120 | 383 | 182 | 6 | 40 | 403 | 19 | 365 | 7.28e-67 | 216 |
| Msa0768550 | MtrunA17_Chr1g0165861 | 38.272 | 243 | 118 | 6 | 163 | 403 | 1 | 213 | 1.83e-43 | 150 |
| Msa0768550 | MtrunA17_Chr8g0385861 | 42.718 | 206 | 75 | 2 | 39 | 201 | 33 | 238 | 2.90e-41 | 145 |
| Msa0768550 | MtrunA17_Chr7g0260731 | 42.982 | 228 | 106 | 3 | 136 | 363 | 45 | 248 | 3.29e-40 | 144 |
| Msa0768550 | MtrunA17_Chr8g0385851 | 37.273 | 110 | 68 | 1 | 295 | 403 | 1 | 110 | 1.83e-17 | 77.8 |
| Msa0768550 | MtrunA17_Chr2g0307921 | 46.753 | 77 | 41 | 0 | 31 | 107 | 8 | 84 | 3.04e-17 | 76.6 |
| Msa0768550 | MtrunA17_Chr1g0165871 | 47.436 | 78 | 35 | 1 | 40 | 111 | 15 | 92 | 5.18e-16 | 75.1 |
| Msa0768550 | MtrunA17_Chr1g0187911 | 44.944 | 89 | 39 | 1 | 275 | 363 | 58 | 136 | 5.50e-16 | 75.1 |
| Msa0768550 | MtrunA17_Chr7g0260721 | 50.769 | 65 | 32 | 0 | 32 | 96 | 17 | 81 | 1.00e-15 | 72.4 |
| Msa0768550 | MtrunA17_Chr2g0307931 | 53.968 | 63 | 29 | 0 | 45 | 107 | 20 | 82 | 1.80e-14 | 68.9 |
| Msa0768550 | MtrunA17_Chr1g0176551 | 45.556 | 90 | 48 | 1 | 136 | 225 | 57 | 145 | 3.05e-13 | 69.7 |
| Msa0768550 | MtrunA17_Chr2g0330321 | 40.000 | 125 | 60 | 4 | 61 | 181 | 1 | 114 | 5.36e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768550 | AT2G03620.1 | 64.394 | 396 | 131 | 4 | 17 | 404 | 27 | 420 | 5.91e-165 | 469 |
| Msa0768550 | AT2G03620.2 | 64.394 | 396 | 131 | 4 | 17 | 404 | 27 | 420 | 5.91e-165 | 469 |
| Msa0768550 | AT1G16010.3 | 55.802 | 405 | 148 | 4 | 28 | 404 | 40 | 441 | 5.52e-148 | 427 |
| Msa0768550 | AT1G16010.1 | 55.802 | 405 | 148 | 4 | 28 | 404 | 40 | 441 | 5.52e-148 | 427 |
| Msa0768550 | AT1G16010.2 | 55.802 | 405 | 148 | 4 | 28 | 404 | 40 | 441 | 5.52e-148 | 427 |
| Msa0768550 | AT1G80900.2 | 52.955 | 423 | 149 | 4 | 20 | 404 | 32 | 442 | 6.23e-148 | 427 |
| Msa0768550 | AT1G80900.1 | 52.955 | 423 | 149 | 4 | 20 | 404 | 32 | 442 | 6.23e-148 | 427 |
| Msa0768550 | AT5G09690.2 | 40.657 | 396 | 192 | 4 | 26 | 403 | 25 | 395 | 2.52e-89 | 276 |
| Msa0768550 | AT5G09690.1 | 40.657 | 396 | 192 | 4 | 26 | 403 | 14 | 384 | 2.82e-89 | 275 |
| Msa0768550 | AT3G19640.1 | 41.096 | 438 | 184 | 11 | 40 | 403 | 46 | 483 | 2.87e-89 | 278 |
| Msa0768550 | AT5G09690.12 | 41.144 | 367 | 173 | 4 | 26 | 375 | 25 | 365 | 1.94e-83 | 260 |
| Msa0768550 | AT3G58970.1 | 37.750 | 400 | 200 | 7 | 32 | 403 | 56 | 434 | 4.03e-78 | 248 |
| Msa0768550 | AT5G09690.7 | 42.424 | 330 | 148 | 3 | 26 | 338 | 14 | 318 | 1.38e-72 | 230 |
| Msa0768550 | AT5G09690.8 | 42.424 | 330 | 148 | 3 | 26 | 338 | 25 | 329 | 1.48e-72 | 231 |
| Msa0768550 | AT5G09690.11 | 42.424 | 330 | 148 | 3 | 26 | 338 | 25 | 329 | 1.48e-72 | 231 |
| Msa0768550 | AT5G09690.3 | 42.424 | 330 | 148 | 3 | 26 | 338 | 14 | 318 | 2.48e-72 | 229 |
| Msa0768550 | AT5G09690.13 | 42.424 | 330 | 148 | 3 | 26 | 338 | 25 | 329 | 2.89e-72 | 230 |
| Msa0768550 | AT5G09690.9 | 42.424 | 330 | 148 | 3 | 26 | 338 | 14 | 318 | 2.89e-72 | 229 |
| Msa0768550 | AT5G64560.1 | 39.440 | 393 | 183 | 6 | 40 | 403 | 26 | 392 | 6.25e-68 | 220 |
| Msa0768550 | AT5G09690.4 | 36.111 | 396 | 195 | 6 | 26 | 403 | 14 | 369 | 1.96e-67 | 218 |
| Msa0768550 | AT5G64560.2 | 40.111 | 359 | 161 | 5 | 40 | 370 | 26 | 358 | 1.68e-61 | 203 |
| Msa0768550 | AT5G09690.5 | 46.047 | 215 | 95 | 2 | 26 | 223 | 14 | 224 | 2.97e-53 | 179 |
| Msa0768550 | AT5G09690.14 | 46.047 | 215 | 95 | 2 | 26 | 223 | 25 | 235 | 4.25e-53 | 179 |
| Msa0768550 | AT5G09690.10 | 46.047 | 215 | 95 | 2 | 26 | 223 | 25 | 235 | 4.25e-53 | 179 |
| Msa0768550 | AT5G09690.6 | 46.047 | 215 | 95 | 2 | 26 | 223 | 25 | 235 | 4.25e-53 | 179 |
| Msa0768550 | AT4G28580.1 | 31.579 | 399 | 214 | 6 | 29 | 403 | 44 | 407 | 2.03e-51 | 177 |
| Msa0768550 | AT5G09720.1 | 39.427 | 279 | 138 | 8 | 36 | 301 | 16 | 276 | 6.67e-47 | 162 |
| Msa0768550 | AT5G09720.2 | 39.427 | 279 | 138 | 8 | 36 | 301 | 16 | 276 | 6.67e-47 | 162 |
Find 122 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATCTTCCCTTTGAATTT+AGG | 0.088653 | 5_2:+34925210 | Msa0768550:CDS |
| TTTACATATTTATCTGTTTA+TGG | 0.124590 | 5_2:+34926982 | Msa0768550:three_prime_UTR |
| TGATCTTCCCTTTGAATTTA+GGG | 0.214507 | 5_2:+34925211 | Msa0768550:CDS |
| ACCATTCAAATTTGCTGTTT+TGG | 0.227613 | 5_2:-34927156 | None:intergenic |
| GCCGCCGTGGCAGGAGTATT+TGG | 0.234108 | 5_2:+34926754 | Msa0768550:CDS |
| TTCTGGATTCAATTTGGTTT+TGG | 0.248178 | 5_2:+34926810 | Msa0768550:CDS |
| CTACTCTTCTGGATTCAATT+TGG | 0.249380 | 5_2:+34926804 | Msa0768550:CDS |
| ATTTATCCTTCTTCCATATT+AGG | 0.249449 | 5_2:+34924721 | Msa0768550:CDS |
| AGCCATCTCCCTTCCTAATA+TGG | 0.295338 | 5_2:-34924734 | None:intergenic |
| TTCTAGAGATCTTCGACTAT+TGG | 0.307849 | 5_2:+34924687 | Msa0768550:CDS |
| TCCCTTTGAATTTAGGGCTC+TGG | 0.324784 | 5_2:+34925217 | Msa0768550:CDS |
| GAACGTGTTCGAAGATTTAA+AGG | 0.326254 | 5_2:+34925957 | Msa0768550:CDS |
| TTCCATGACCTCTCTGCTTC+AGG | 0.330823 | 5_2:-34924576 | None:intergenic |
| AATCGCAGGGCTGGTATAAA+AGG | 0.334220 | 5_2:+34924553 | Msa0768550:CDS |
| GAAGCATCTCAAACTTTATC+AGG | 0.362455 | 5_2:-34926699 | None:intergenic |
| TTCAAAATATCACGGAATTA+CGG | 0.364104 | 5_2:-34927099 | None:intergenic |
| ATTGGAAATTCAAGTAAATA+TGG | 0.367253 | 5_2:+34926320 | Msa0768550:CDS |
| GAAGAAGGATAAATGAATTT+CGG | 0.372060 | 5_2:-34924712 | None:intergenic |
| ATCTATCAGTACTCTCCTTC+TGG | 0.372524 | 5_2:+34925935 | Msa0768550:CDS |
| AGTAAATATGGTAGTTCAAC+GGG | 0.377045 | 5_2:+34926332 | Msa0768550:CDS |
| CCAAGGACTTTCAGCGGCAT+TGG | 0.377986 | 5_2:+34926302 | Msa0768550:CDS |
| CAATGGCATCGTGATTGAAA+TGG | 0.382554 | 5_2:-34927055 | None:intergenic |
| AACACTCCAACATGTTCTTC+AGG | 0.394266 | 5_2:+34923673 | Msa0768550:five_prime_UTR |
| ATGAATACTTGATTAGTAAA+GGG | 0.394318 | 5_2:+34924411 | Msa0768550:five_prime_UTR |
| GCAATATTTGCCGCCGTGGC+AGG | 0.398522 | 5_2:+34926745 | Msa0768550:CDS |
| TTCAATCACGATGCCATTGT+TGG | 0.402108 | 5_2:+34927059 | Msa0768550:three_prime_UTR |
| TGACAGATTCGAAAACTAAC+TGG | 0.408564 | 5_2:-34927184 | None:intergenic |
| ATGCACATCTTTAGATTCTC+AGG | 0.428704 | 5_2:+34925259 | Msa0768550:CDS |
| ATATCCCGTGCTAGATGAAC+TGG | 0.441183 | 5_2:+34925908 | Msa0768550:CDS |
| ATTTGAAAACAATCATTTGA+AGG | 0.441921 | 5_2:-34926200 | None:intergenic |
| AATGAATACTTGATTAGTAA+AGG | 0.445309 | 5_2:+34924410 | Msa0768550:five_prime_UTR |
| TTTCAAATTCGTTCACCATC+AGG | 0.446404 | 5_2:+34926215 | Msa0768550:CDS |
| AATGGCATCGTGATTGAAAT+GGG | 0.447144 | 5_2:-34927054 | None:intergenic |
| GAGGTCATGGAAGTCGGTCT+TGG | 0.450393 | 5_2:+34924587 | Msa0768550:CDS |
| TTGTCAACCTTGAACAAATC+CGG | 0.460150 | 5_2:+34924761 | Msa0768550:CDS |
| GATTTGACAGGTAAATGAAC+TGG | 0.464980 | 5_2:+34925875 | Msa0768550:intron |
| CCAATGCCGCTGAAAGTCCT+TGG | 0.466774 | 5_2:-34926302 | None:intergenic |
| TAGGGCTCTGGAGTTAGCTC+TGG | 0.466890 | 5_2:+34925229 | Msa0768550:CDS |
| ACCAAAACAGCAAATTTGAA+TGG | 0.472238 | 5_2:+34927155 | Msa0768550:three_prime_UTR |
| ACGGAATTACGGAGACATCT+TGG | 0.473872 | 5_2:-34927088 | None:intergenic |
| GTATCTAAAATAGAATAGTA+AGG | 0.476408 | 5_2:-34926869 | None:intergenic |
| TTTGACTCAGCGAGTTCAAA+AGG | 0.483080 | 5_2:+34925992 | Msa0768550:CDS |
| TTAACAGGCAAGCGAATCGC+AGG | 0.485254 | 5_2:+34924539 | Msa0768550:CDS |
| CACTTATAATCACAAGTTCA+TGG | 0.485516 | 5_2:+34923588 | None:intergenic |
| TCACCAGAGCGGTCACTTAG+TGG | 0.486329 | 5_2:+34926266 | Msa0768550:CDS |
| CTCCAGAGCCCTAAATTCAA+AGG | 0.486570 | 5_2:-34925219 | None:intergenic |
| GGCCTGAAGCAGAGAGGTCA+TGG | 0.488760 | 5_2:+34924574 | Msa0768550:CDS |
| ATGGTACTGTTGGTCGGTAC+AGG | 0.489528 | 5_2:+34924827 | Msa0768550:CDS |
| TCCAGAGCCCTAAATTCAAA+GGG | 0.491102 | 5_2:-34925218 | None:intergenic |
| TTATACACCGGATTTGTTCA+AGG | 0.499716 | 5_2:-34924768 | None:intergenic |
| TCCCTTCCTAATATGGAAGA+AGG | 0.500264 | 5_2:-34924727 | None:intergenic |
| AATAGTCGAAGATCTCTAGA+AGG | 0.505041 | 5_2:-34924685 | None:intergenic |
| AGTGACCGCTCTGGTGAAGT+AGG | 0.509078 | 5_2:-34926260 | None:intergenic |
| GTGACCGCTCTGGTGAAGTA+GGG | 0.510030 | 5_2:-34926259 | None:intergenic |
| TTGATTAGTAAAGGGGATCA+AGG | 0.512855 | 5_2:+34924419 | Msa0768550:five_prime_UTR |
| ACAGGACAATATTATGCAAT+CGG | 0.514813 | 5_2:+34924845 | Msa0768550:CDS |
| TCCTTCTTCCATATTAGGAA+GGG | 0.517517 | 5_2:+34924726 | Msa0768550:CDS |
| ATCCTTCTTCCATATTAGGA+AGG | 0.519036 | 5_2:+34924725 | Msa0768550:CDS |
| ACAGGTAAATGAACTGGAGA+TGG | 0.521690 | 5_2:+34925881 | Msa0768550:intron |
| TTTGGTACAAAGAGCAGAGA+TGG | 0.524487 | 5_2:-34927138 | None:intergenic |
| TGATGAAATAGAACATCTCA+TGG | 0.526083 | 5_2:+34926115 | Msa0768550:CDS |
| AGGCAAGCGAATCGCAGGGC+TGG | 0.527115 | 5_2:+34924544 | Msa0768550:CDS |
| CTTGTCAAGTGTCACAATCT+CGG | 0.527722 | 5_2:-34924635 | None:intergenic |
| AAAATCAGACTCATGTAGAC+TGG | 0.529022 | 5_2:-34924518 | None:intergenic |
| AGATGTGTCTGACTGAGAAA+AGG | 0.536746 | 5_2:+34926159 | Msa0768550:CDS |
| TCAGCCGCTAGAAATGTTGC+TGG | 0.537626 | 5_2:+34926379 | Msa0768550:CDS |
| AAGTAAATATGGTAGTTCAA+CGG | 0.547346 | 5_2:+34926331 | Msa0768550:CDS |
| TACAAAGAGCAGAGATGGGA+AGG | 0.558679 | 5_2:-34927133 | None:intergenic |
| TCTTACAGCAGCCACATTGG+TGG | 0.559109 | 5_2:+34926720 | Msa0768550:CDS |
| GGCCGCAATATTTGCCGCCG+TGG | 0.566381 | 5_2:+34926741 | Msa0768550:CDS |
| TGAATACTTGATTAGTAAAG+GGG | 0.567430 | 5_2:+34924412 | Msa0768550:five_prime_UTR |
| AGCCCACTAAGTGACCGCTC+TGG | 0.568756 | 5_2:-34926269 | None:intergenic |
| CACCAGAGCGGTCACTTAGT+GGG | 0.569271 | 5_2:+34926267 | Msa0768550:CDS |
| AGCCATGTGAAAACAGCACT+TGG | 0.571092 | 5_2:-34927013 | None:intergenic |
| GAGAACAATATACAATGCAA+TGG | 0.572075 | 5_2:+34924468 | Msa0768550:exon |
| GCATCTCAAACTTTATCAGG+AGG | 0.575972 | 5_2:-34926696 | None:intergenic |
| TTCCATATTAGGAAGGGAGA+TGG | 0.579126 | 5_2:+34924732 | Msa0768550:CDS |
| ATCAATAATCTTCAACGACA+AGG | 0.579744 | 5_2:+34923623 | Msa0768550:five_prime_UTR |
| GTGGGCTTCAGATGTTGCCA+AGG | 0.580454 | 5_2:+34926285 | Msa0768550:CDS |
| TTGGTACAAAGAGCAGAGAT+GGG | 0.582683 | 5_2:-34927137 | None:intergenic |
| AAGACAAGACTGCACGTGAA+GGG | 0.583181 | 5_2:-34923650 | None:intergenic |
| TGCCACGGCGGCAAATATTG+CGG | 0.584897 | 5_2:-34926743 | None:intergenic |
| CGAGATTGTGACACTTGACA+AGG | 0.585644 | 5_2:+34924636 | Msa0768550:CDS |
| GCTTCTTACAGCAGCCACAT+TGG | 0.587792 | 5_2:+34926717 | Msa0768550:CDS |
| ATCTTGGCTTGCACCAACAA+TGG | 0.589169 | 5_2:-34927072 | None:intergenic |
| TACTCTCAACACATTATCGT+CGG | 0.589716 | 5_2:+34926427 | Msa0768550:CDS |
| TGAGGCCAGTTCATCTAGCA+CGG | 0.589991 | 5_2:-34925913 | None:intergenic |
| ATCAAGGCTACCTACTGTAT+CGG | 0.590517 | 5_2:+34924435 | Msa0768550:five_prime_UTR |
| AGCAGAGAGGTCATGGAAGT+CGG | 0.592681 | 5_2:+34924581 | Msa0768550:CDS |
| TCGTTGATTAAAGGTTGTGG+TGG | 0.597150 | 5_2:+34924386 | Msa0768550:intron |
| AATTCACTCGATGGTACTGT+TGG | 0.598242 | 5_2:+34924817 | Msa0768550:CDS |
| GAGGCCAGTTCATCTAGCAC+GGG | 0.606072 | 5_2:-34925912 | None:intergenic |
| CATGGATGACGATGGTGACA+TGG | 0.607118 | 5_2:+34926133 | Msa0768550:CDS |
| ATCTTCGAACACGTTCCAGA+AGG | 0.609844 | 5_2:-34925950 | None:intergenic |
| ACGACTCGTTCAAAATATCA+CGG | 0.612544 | 5_2:-34927107 | None:intergenic |
| ATTCATGAGGATGACTTCAT+CGG | 0.612801 | 5_2:-34924797 | None:intergenic |
| CATTCCAAATACTCCTGCCA+CGG | 0.614342 | 5_2:-34926758 | None:intergenic |
| GAACTCGCTGAGTCAAAGCA+AGG | 0.614782 | 5_2:-34925986 | None:intergenic |
| TGACCGCTCTGGTGAAGTAG+GGG | 0.617312 | 5_2:-34926258 | None:intergenic |
| CACTCGATGGTACTGTTGGT+CGG | 0.617891 | 5_2:+34924821 | Msa0768550:CDS |
| GTTCATCTGATAACACAGAA+AGG | 0.620976 | 5_2:+34926354 | Msa0768550:CDS |
| TCAATAATCTTCAACGACAA+GGG | 0.621115 | 5_2:+34923624 | Msa0768550:five_prime_UTR |
| TTTGAAATCACTCTACCTGA+TGG | 0.628200 | 5_2:-34926230 | None:intergenic |
| TAACAGGCAAGCGAATCGCA+GGG | 0.633785 | 5_2:+34924540 | Msa0768550:CDS |
| TACCATCGAGTGAATTCATG+AGG | 0.638527 | 5_2:-34924810 | None:intergenic |
| TGAGATGTTCTATTTCATCA+CGG | 0.640698 | 5_2:-34926112 | None:intergenic |
| ATCCTCATGAATTCACTCGA+TGG | 0.641599 | 5_2:+34924808 | Msa0768550:CDS |
| TAAGACAAGACTGCACGTGA+AGG | 0.644552 | 5_2:-34923651 | None:intergenic |
| AAGGAGAGTACTGATAGATG+AGG | 0.645637 | 5_2:-34925931 | None:intergenic |
| TAGTTACCTGAAGAACATGT+TGG | 0.645641 | 5_2:-34923679 | None:intergenic |
| CAAAGAATATATTGACGACA+CGG | 0.646192 | 5_2:+34926539 | Msa0768550:CDS |
| AAATATTGCGGCCACCAATG+TGG | 0.649069 | 5_2:-34926731 | None:intergenic |
| TCCAAATACTCCTGCCACGG+CGG | 0.649365 | 5_2:-34926755 | None:intergenic |
| ATGTTGCCAAGGACTTTCAG+CGG | 0.651077 | 5_2:+34926296 | Msa0768550:CDS |
| ACTCGCAATTCCGATACAGT+AGG | 0.653251 | 5_2:-34924445 | None:intergenic |
| GCTTCCAGCAACATTTCTAG+CGG | 0.661159 | 5_2:-34926383 | None:intergenic |
| CATCGGCAGTGATTATACAC+CGG | 0.664675 | 5_2:-34924780 | None:intergenic |
| ATGGCATCGTGATTGAAATG+GGG | 0.692181 | 5_2:-34927053 | None:intergenic |
| GAACATCTCATGGATGACGA+TGG | 0.697862 | 5_2:+34926125 | Msa0768550:CDS |
| AATGCAATGGAAGAAACACA+AGG | 0.739174 | 5_2:+34924481 | Msa0768550:exon |
| ATAAAAGGCCTGAAGCAGAG+AGG | 0.740166 | 5_2:+34924568 | Msa0768550:CDS |
| CAGCCCCTACTTCACCAGAG+CGG | 0.766346 | 5_2:+34926255 | Msa0768550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTACAACAAAAAATAAAT+TGG | - | chr5_2:34924106-34924125 | None:intergenic | 10.0% |
| !! | TCAAATATGTTATATTAATA+AGG | + | chr5_2:34925847-34925866 | Msa0768550:intron | 10.0% |
| !! | TATATTATAGAAATAGTGAT+TGG | + | chr5_2:34923762-34923781 | Msa0768550:intron | 15.0% |
| !! | ATATTATAGAAATAGTGATT+GGG | + | chr5_2:34923763-34923782 | Msa0768550:intron | 15.0% |
| !! | AGCATACATAATATTTATAT+CGG | + | chr5_2:34924925-34924944 | Msa0768550:intron | 15.0% |
| !! | CATTATGTTTACATTAAAAT+TGG | + | chr5_2:34925359-34925378 | Msa0768550:intron | 15.0% |
| !!! | AATTTTATTAAAAAGACATC+AGG | - | chr5_2:34925682-34925701 | None:intergenic | 15.0% |
| !! | AAGAAAGAGAATTATAATTA+AGG | - | chr5_2:34926040-34926059 | None:intergenic | 15.0% |
| !! | TTATAATATATAGTGACAAA+AGG | - | chr5_2:34926616-34926635 | None:intergenic | 15.0% |
| !! | TTTACATATTTATCTGTTTA+TGG | + | chr5_2:34926982-34927001 | Msa0768550:three_prime_UTR | 15.0% |
| !! | TATTATAGAAATAGTGATTG+GGG | + | chr5_2:34923764-34923783 | Msa0768550:intron | 20.0% |
| !!! | TTATATCTTGTTTGAAACTT+AGG | + | chr5_2:34923802-34923821 | Msa0768550:intron | 20.0% |
| !!! | TATATCTTGTTTGAAACTTA+GGG | + | chr5_2:34923803-34923822 | Msa0768550:intron | 20.0% |
| !! | TATCCTCATAAAATTTAATC+TGG | + | chr5_2:34923963-34923982 | Msa0768550:intron | 20.0% |
| !! | ATCCTCATAAAATTTAATCT+GGG | + | chr5_2:34923964-34923983 | Msa0768550:intron | 20.0% |
| !! | AATGAATACTTGATTAGTAA+AGG | + | chr5_2:34924410-34924429 | Msa0768550:five_prime_UTR | 20.0% |
| !! | ATGAATACTTGATTAGTAAA+GGG | + | chr5_2:34924411-34924430 | Msa0768550:five_prime_UTR | 20.0% |
| !! | TGAAAAATTTACAAGATTTC+AGG | - | chr5_2:34925520-34925539 | None:intergenic | 20.0% |
| !! | CTAAATACATAATAAGTCAT+TGG | + | chr5_2:34925785-34925804 | Msa0768550:intron | 20.0% |
| !! | GTAACTTATATTTAGTTATC+AGG | + | chr5_2:34926088-34926107 | Msa0768550:intron | 20.0% |
| !! | ATTTGAAAACAATCATTTGA+AGG | - | chr5_2:34926203-34926222 | None:intergenic | 20.0% |
| !! | ATTGGAAATTCAAGTAAATA+TGG | + | chr5_2:34926320-34926339 | Msa0768550:CDS | 20.0% |
| !!! | AGATTTTCTCAACATAAAAT+TGG | + | chr5_2:34926563-34926582 | Msa0768550:CDS | 20.0% |
| !!! | GTATCTAAAATAGAATAGTA+AGG | - | chr5_2:34926872-34926891 | None:intergenic | 20.0% |
| ! | ATTATAGAAATAGTGATTGG+GGG | + | chr5_2:34923765-34923784 | Msa0768550:intron | 25.0% |
| !! | ATATCTTGTTTGAAACTTAG+GGG | + | chr5_2:34923804-34923823 | Msa0768550:intron | 25.0% |
| !! | AACCCAGATTAAATTTTATG+AGG | - | chr5_2:34923969-34923988 | None:intergenic | 25.0% |
| ! | ATTACATGAAATTCAGCTAT+TGG | + | chr5_2:34924058-34924077 | Msa0768550:intron | 25.0% |
| !!! | AAAGAGTTGAGTTTTGAATA+CGG | + | chr5_2:34924286-34924305 | Msa0768550:intron | 25.0% |
| ! | TGAATACTTGATTAGTAAAG+GGG | + | chr5_2:34924412-34924431 | Msa0768550:five_prime_UTR | 25.0% |
| ! | GAAGAAGGATAAATGAATTT+CGG | - | chr5_2:34924715-34924734 | None:intergenic | 25.0% |
| ! | ATTTATCCTTCTTCCATATT+AGG | + | chr5_2:34924721-34924740 | Msa0768550:CDS | 25.0% |
| !! | CATTTTCATTAAACATCCTA+TGG | + | chr5_2:34925440-34925459 | Msa0768550:intron | 25.0% |
| ! | TTCACTTTGATGAAAATAGA+AGG | + | chr5_2:34925536-34925555 | Msa0768550:intron | 25.0% |
| !! | TGATATCAGTGTTTGAATTT+TGG | + | chr5_2:34925717-34925736 | Msa0768550:intron | 25.0% |
| ! | ATTGATGTCTTGTGAAAATA+TGG | - | chr5_2:34925823-34925842 | None:intergenic | 25.0% |
| ! | AAATATAAGTTACTAGTTGC+AGG | - | chr5_2:34926081-34926100 | None:intergenic | 25.0% |
| ! | AAGTAAATATGGTAGTTCAA+CGG | + | chr5_2:34926331-34926350 | Msa0768550:CDS | 25.0% |
| ! | CAGATAGATTGAAAAGTTTA+TGG | - | chr5_2:34926656-34926675 | None:intergenic | 25.0% |
| !! | TTTTCAATCTATCTGTTACA+GGG | + | chr5_2:34926661-34926680 | Msa0768550:intron | 25.0% |
| ! | TTCAAAATATCACGGAATTA+CGG | - | chr5_2:34927102-34927121 | None:intergenic | 25.0% |
| ATCAATAATCTTCAACGACA+AGG | + | chr5_2:34923623-34923642 | Msa0768550:five_prime_UTR | 30.0% | |
| TCAATAATCTTCAACGACAA+GGG | + | chr5_2:34923624-34923643 | Msa0768550:five_prime_UTR | 30.0% | |
| !!! | ACTACTGACATCTTTTTTTG+AGG | + | chr5_2:34923698-34923717 | Msa0768550:intron | 30.0% |
| ! | TTTCGTAATTGTTTCTCACT+TGG | + | chr5_2:34923906-34923925 | Msa0768550:intron | 30.0% |
| ! | TTCGTAATTGTTTCTCACTT+GGG | + | chr5_2:34923907-34923926 | Msa0768550:intron | 30.0% |
| !!! | AAGAGTTGAGTTTTGAATAC+GGG | + | chr5_2:34924287-34924306 | Msa0768550:intron | 30.0% |
| !! | GTAATTAACTGAGTATTGGT+TGG | + | chr5_2:34924309-34924328 | Msa0768550:intron | 30.0% |
| !! | CTTCCTTTTTCGTTGATTAA+AGG | + | chr5_2:34924377-34924396 | Msa0768550:intron | 30.0% |
| CAACCTTTAATCAACGAAAA+AGG | - | chr5_2:34924383-34924402 | None:intergenic | 30.0% | |
| !! | TTTTCGTTGATTAAAGGTTG+TGG | + | chr5_2:34924383-34924402 | Msa0768550:intron | 30.0% |
| GAGAACAATATACAATGCAA+TGG | + | chr5_2:34924468-34924487 | Msa0768550:exon | 30.0% | |
| !! | TACATGAGTCTGATTTTAAC+AGG | + | chr5_2:34924524-34924543 | Msa0768550:CDS | 30.0% |
| GTCTTGGATAAAAATTGATC+AGG | + | chr5_2:34924603-34924622 | Msa0768550:CDS | 30.0% | |
| TGGATAAAAATTGATCAGGA+TGG | + | chr5_2:34924607-34924626 | Msa0768550:CDS | 30.0% | |
| GGATAAAAATTGATCAGGAT+GGG | + | chr5_2:34924608-34924627 | Msa0768550:CDS | 30.0% | |
| ACAGGACAATATTATGCAAT+CGG | + | chr5_2:34924845-34924864 | Msa0768550:CDS | 30.0% | |
| !! | TTCTAGTTTACAGCAAAAAG+AGG | - | chr5_2:34924902-34924921 | None:intergenic | 30.0% |
| ! | ATAGTAGTGGAAGAATTATG+AGG | + | chr5_2:34924968-34924987 | Msa0768550:intron | 30.0% |
| ! | TAGTAGTGGAAGAATTATGA+GGG | + | chr5_2:34924969-34924988 | Msa0768550:intron | 30.0% |
| ! | TGAAATAGGATGTCTTTTGT+TGG | + | chr5_2:34925009-34925028 | Msa0768550:intron | 30.0% |
| GAAATCAGTAAGCAATTCTA+TGG | - | chr5_2:34925177-34925196 | None:intergenic | 30.0% | |
| ATGATCTTCCCTTTGAATTT+AGG | + | chr5_2:34925210-34925229 | Msa0768550:CDS | 30.0% | |
| TGATCTTCCCTTTGAATTTA+GGG | + | chr5_2:34925211-34925230 | Msa0768550:CDS | 30.0% | |
| !! | TGACCAGAAACTTTACTTTT+TGG | + | chr5_2:34925289-34925308 | Msa0768550:intron | 30.0% |
| !!! | GACCAGAAACTTTACTTTTT+GGG | + | chr5_2:34925290-34925309 | Msa0768550:intron | 30.0% |
| !!! | ACCAGAAACTTTACTTTTTG+GGG | + | chr5_2:34925291-34925310 | Msa0768550:intron | 30.0% |
| ACAGATTCAATGCAAAAATG+TGG | - | chr5_2:34925323-34925342 | None:intergenic | 30.0% | |
| AAAACAGTGTTTAGGCTTAA+CGG | + | chr5_2:34925490-34925509 | Msa0768550:intron | 30.0% | |
| AGGGAGAGAATATAATGTTT+AGG | + | chr5_2:34925603-34925622 | Msa0768550:intron | 30.0% | |
| TCAAACACTGATATCAAGTT+TGG | - | chr5_2:34925713-34925732 | None:intergenic | 30.0% | |
| ! | AATAAGGATCTTGATTTGAC+AGG | + | chr5_2:34925863-34925882 | Msa0768550:intron | 30.0% |
| TGAGATGTTCTATTTCATCA+CGG | - | chr5_2:34926115-34926134 | None:intergenic | 30.0% | |
| TGATGAAATAGAACATCTCA+TGG | + | chr5_2:34926115-34926134 | Msa0768550:CDS | 30.0% | |
| AGTAAATATGGTAGTTCAAC+GGG | + | chr5_2:34926332-34926351 | Msa0768550:CDS | 30.0% | |
| TCAATGAAGATAAGCAATGT+GGG | - | chr5_2:34926497-34926516 | None:intergenic | 30.0% | |
| ATCAATGAAGATAAGCAATG+TGG | - | chr5_2:34926498-34926517 | None:intergenic | 30.0% | |
| CAAAGAATATATTGACGACA+CGG | + | chr5_2:34926539-34926558 | Msa0768550:CDS | 30.0% | |
| ATTGAAAAGTTTATGGTTCG+TGG | - | chr5_2:34926649-34926668 | None:intergenic | 30.0% | |
| ! | CTTTTCAATCTATCTGTTAC+AGG | + | chr5_2:34926660-34926679 | Msa0768550:intron | 30.0% |
| !! | TTCTGGATTCAATTTGGTTT+TGG | + | chr5_2:34926810-34926829 | Msa0768550:CDS | 30.0% |
| !!! | AATTTGGTTTTGGTAGTTAC+TGG | + | chr5_2:34926820-34926839 | Msa0768550:CDS | 30.0% |
| ! | TGCATTTTATCAAAGATGAC+AGG | + | chr5_2:34926937-34926956 | Msa0768550:three_prime_UTR | 30.0% |
| ACCAAAACAGCAAATTTGAA+TGG | + | chr5_2:34927155-34927174 | Msa0768550:three_prime_UTR | 30.0% | |
| !!! | ACCATTCAAATTTGCTGTTT+TGG | - | chr5_2:34927159-34927178 | None:intergenic | 30.0% |
| TAGTTACCTGAAGAACATGT+TGG | - | chr5_2:34923682-34923701 | None:intergenic | 35.0% | |
| ! | TGTTTGAAACTTAGGGGAAA+TGG | + | chr5_2:34923810-34923829 | Msa0768550:intron | 35.0% |
| ! | GTTTGAAACTTAGGGGAAAT+GGG | + | chr5_2:34923811-34923830 | Msa0768550:intron | 35.0% |
| GTACTCACACTTCATATTGA+AGG | + | chr5_2:34924137-34924156 | Msa0768550:intron | 35.0% | |
| TCATTTCCTCGACTTATTCT+TGG | + | chr5_2:34924222-34924241 | Msa0768550:intron | 35.0% | |
| ! | CAACTCTTTAACTTCTACGA+AGG | - | chr5_2:34924275-34924294 | None:intergenic | 35.0% |
| ACGGGTAATTAACTGAGTAT+TGG | + | chr5_2:34924305-34924324 | Msa0768550:intron | 35.0% | |
| TTGATTAGTAAAGGGGATCA+AGG | + | chr5_2:34924419-34924438 | Msa0768550:five_prime_UTR | 35.0% | |
| AATGCAATGGAAGAAACACA+AGG | + | chr5_2:34924481-34924500 | Msa0768550:exon | 35.0% | |
| AAAATCAGACTCATGTAGAC+TGG | - | chr5_2:34924521-34924540 | None:intergenic | 35.0% | |
| AATAGTCGAAGATCTCTAGA+AGG | - | chr5_2:34924688-34924707 | None:intergenic | 35.0% | |
| ! | TTCTAGAGATCTTCGACTAT+TGG | + | chr5_2:34924687-34924706 | Msa0768550:CDS | 35.0% |
| ATCCTTCTTCCATATTAGGA+AGG | + | chr5_2:34924725-34924744 | Msa0768550:CDS | 35.0% | |
| TCCTTCTTCCATATTAGGAA+GGG | + | chr5_2:34924726-34924745 | Msa0768550:CDS | 35.0% | |
| TTGTCAACCTTGAACAAATC+CGG | + | chr5_2:34924761-34924780 | Msa0768550:CDS | 35.0% | |
| ! | TTATACACCGGATTTGTTCA+AGG | - | chr5_2:34924771-34924790 | None:intergenic | 35.0% |
| ATTCATGAGGATGACTTCAT+CGG | - | chr5_2:34924800-34924819 | None:intergenic | 35.0% | |
| CAGAGAGAAAAATCTGGTAA+GGG | + | chr5_2:34924871-34924890 | Msa0768550:intron | 35.0% | |
| ATCGGAATTGTAGCACTATT+AGG | + | chr5_2:34924943-34924962 | Msa0768550:intron | 35.0% | |
| GCACTATTAGGAAATAGTAG+TGG | + | chr5_2:34924955-34924974 | Msa0768550:intron | 35.0% | |
| ATGCACATCTTTAGATTCTC+AGG | + | chr5_2:34925259-34925278 | Msa0768550:CDS | 35.0% | |
| TCCCCAAAAAGTAAAGTTTC+TGG | - | chr5_2:34925295-34925314 | None:intergenic | 35.0% | |
| GATTCAATGCAAAAATGTGG+AGG | - | chr5_2:34925320-34925339 | None:intergenic | 35.0% | |
| GAAATTGCAGGAAAAACCAT+AGG | - | chr5_2:34925459-34925478 | None:intergenic | 35.0% | |
| CAACTCACAAAACAGTGTTT+AGG | + | chr5_2:34925482-34925501 | Msa0768550:intron | 35.0% | |
| TTGTAGCACTCAAGATATGT+AGG | + | chr5_2:34925583-34925602 | Msa0768550:intron | 35.0% | |
| TGTAGCACTCAAGATATGTA+GGG | + | chr5_2:34925584-34925603 | Msa0768550:intron | 35.0% | |
| GATTTGACAGGTAAATGAAC+TGG | + | chr5_2:34925875-34925894 | Msa0768550:intron | 35.0% | |
| GAACGTGTTCGAAGATTTAA+AGG | + | chr5_2:34925957-34925976 | Msa0768550:CDS | 35.0% | |
| TTTCAAATTCGTTCACCATC+AGG | + | chr5_2:34926215-34926234 | Msa0768550:CDS | 35.0% | |
| ! | TTTGAAATCACTCTACCTGA+TGG | - | chr5_2:34926233-34926252 | None:intergenic | 35.0% |
| GTTCATCTGATAACACAGAA+AGG | + | chr5_2:34926354-34926373 | Msa0768550:CDS | 35.0% | |
| TACTCTCAACACATTATCGT+CGG | + | chr5_2:34926427-34926446 | Msa0768550:CDS | 35.0% | |
| ACATTATCGTCGGTATGTAA+AGG | + | chr5_2:34926437-34926456 | Msa0768550:intron | 35.0% | |
| ATCTTCATTGATACTCTTGC+TGG | + | chr5_2:34926506-34926525 | Msa0768550:intron | 35.0% | |
| ! | GAAGCATCTCAAACTTTATC+AGG | - | chr5_2:34926702-34926721 | None:intergenic | 35.0% |
| AGAAGAGTAGTCAAAAACTG+AGG | - | chr5_2:34926794-34926813 | None:intergenic | 35.0% | |
| !! | TCAGTTTTTGACTACTCTTC+TGG | + | chr5_2:34926793-34926812 | Msa0768550:CDS | 35.0% |
| CTACTCTTCTGGATTCAATT+TGG | + | chr5_2:34926804-34926823 | Msa0768550:CDS | 35.0% | |
| !! | GTTTTGGTAGTTACTGGAAT+TGG | + | chr5_2:34926826-34926845 | Msa0768550:CDS | 35.0% |
| ! | ATGCTGTTGAGTTTTCATTC+TGG | - | chr5_2:34926907-34926926 | None:intergenic | 35.0% |
| AATGGCATCGTGATTGAAAT+GGG | - | chr5_2:34927057-34927076 | None:intergenic | 35.0% | |
| ACGACTCGTTCAAAATATCA+CGG | - | chr5_2:34927110-34927129 | None:intergenic | 35.0% | |
| TGACAGATTCGAAAACTAAC+TGG | - | chr5_2:34927187-34927206 | None:intergenic | 35.0% | |
| AACACTCCAACATGTTCTTC+AGG | + | chr5_2:34923673-34923692 | Msa0768550:five_prime_UTR | 40.0% | |
| ATAGAAATAGTGATTGGGGG+TGG | + | chr5_2:34923768-34923787 | Msa0768550:intron | 40.0% | |
| TAGAAATAGTGATTGGGGGT+GGG | + | chr5_2:34923769-34923788 | Msa0768550:intron | 40.0% | |
| TGTTCTTGTGCATAGAAGCT+TGG | + | chr5_2:34923993-34924012 | Msa0768550:intron | 40.0% | |
| TCAACACCAAGAATAAGTCG+AGG | - | chr5_2:34924231-34924250 | None:intergenic | 40.0% | |
| ! | TCGTTGATTAAAGGTTGTGG+TGG | + | chr5_2:34924386-34924405 | Msa0768550:intron | 40.0% |
| ATCAAGGCTACCTACTGTAT+CGG | + | chr5_2:34924435-34924454 | Msa0768550:five_prime_UTR | 40.0% | |
| CTTGTCAAGTGTCACAATCT+CGG | - | chr5_2:34924638-34924657 | None:intergenic | 40.0% | |
| TCCCTTCCTAATATGGAAGA+AGG | - | chr5_2:34924730-34924749 | None:intergenic | 40.0% | |
| TTCCATATTAGGAAGGGAGA+TGG | + | chr5_2:34924732-34924751 | Msa0768550:CDS | 40.0% | |
| ATCCTCATGAATTCACTCGA+TGG | + | chr5_2:34924808-34924827 | Msa0768550:CDS | 40.0% | |
| TACCATCGAGTGAATTCATG+AGG | - | chr5_2:34924813-34924832 | None:intergenic | 40.0% | |
| AATTCACTCGATGGTACTGT+TGG | + | chr5_2:34924817-34924836 | Msa0768550:CDS | 40.0% | |
| ! | CCTTACCAGATTTTTCTCTC+TGG | - | chr5_2:34924873-34924892 | None:intergenic | 40.0% |
| CCAGAGAGAAAAATCTGGTA+AGG | + | chr5_2:34924870-34924889 | Msa0768550:intron | 40.0% | |
| GTGGAAGAATTATGAGGGTA+CGG | + | chr5_2:34924974-34924993 | Msa0768550:intron | 40.0% | |
| TCCAGAGCCCTAAATTCAAA+GGG | - | chr5_2:34925221-34925240 | None:intergenic | 40.0% | |
| ! | TGTGAGTTGTCTGAAATTGC+AGG | - | chr5_2:34925471-34925490 | None:intergenic | 40.0% |
| AGAAGGCTGCTAAAATCTCT+AGG | + | chr5_2:34925553-34925572 | Msa0768550:intron | 40.0% | |
| ACAGGTAAATGAACTGGAGA+TGG | + | chr5_2:34925881-34925900 | Msa0768550:intron | 40.0% | |
| !! | AAGGAGAGTACTGATAGATG+AGG | - | chr5_2:34925934-34925953 | None:intergenic | 40.0% |
| ATCTATCAGTACTCTCCTTC+TGG | + | chr5_2:34925935-34925954 | Msa0768550:CDS | 40.0% | |
| TTTGACTCAGCGAGTTCAAA+AGG | + | chr5_2:34925992-34926011 | Msa0768550:CDS | 40.0% | |
| ! | GTTCAAAAGGTTGATCAACG+TGG | + | chr5_2:34926005-34926024 | Msa0768550:intron | 40.0% |
| AGATGTGTCTGACTGAGAAA+AGG | + | chr5_2:34926159-34926178 | Msa0768550:CDS | 40.0% | |
| GCATCTCAAACTTTATCAGG+AGG | - | chr5_2:34926699-34926718 | None:intergenic | 40.0% | |
| !!! | ATCCAAGTGCTGTTTTCACA+TGG | + | chr5_2:34927011-34927030 | Msa0768550:three_prime_UTR | 40.0% |
| ATGGCATCGTGATTGAAATG+GGG | - | chr5_2:34927056-34927075 | None:intergenic | 40.0% | |
| CAATGGCATCGTGATTGAAA+TGG | - | chr5_2:34927058-34927077 | None:intergenic | 40.0% | |
| TTCAATCACGATGCCATTGT+TGG | + | chr5_2:34927059-34927078 | Msa0768550:three_prime_UTR | 40.0% | |
| TTGGTACAAAGAGCAGAGAT+GGG | - | chr5_2:34927140-34927159 | None:intergenic | 40.0% | |
| TTTGGTACAAAGAGCAGAGA+TGG | - | chr5_2:34927141-34927160 | None:intergenic | 40.0% | |
| AAGACAAGACTGCACGTGAA+GGG | - | chr5_2:34923653-34923672 | None:intergenic | 45.0% | |
| TAAGACAAGACTGCACGTGA+AGG | - | chr5_2:34923654-34923673 | None:intergenic | 45.0% | |
| ACTCGCAATTCCGATACAGT+AGG | - | chr5_2:34924448-34924467 | None:intergenic | 45.0% | |
| ! | AATCGCAGGGCTGGTATAAA+AGG | + | chr5_2:34924553-34924572 | Msa0768550:CDS | 45.0% |
| ATAAAAGGCCTGAAGCAGAG+AGG | + | chr5_2:34924568-34924587 | Msa0768550:CDS | 45.0% | |
| CGAGATTGTGACACTTGACA+AGG | + | chr5_2:34924636-34924655 | Msa0768550:CDS | 45.0% | |
| AGCCATCTCCCTTCCTAATA+TGG | - | chr5_2:34924737-34924756 | None:intergenic | 45.0% | |
| CATCGGCAGTGATTATACAC+CGG | - | chr5_2:34924783-34924802 | None:intergenic | 45.0% | |
| ! | GGCATTGAGTGGTGTGAAAT+AGG | + | chr5_2:34924995-34925014 | Msa0768550:intron | 45.0% |
| ! | TCCCTTTGAATTTAGGGCTC+TGG | + | chr5_2:34925217-34925236 | Msa0768550:CDS | 45.0% |
| CTCCAGAGCCCTAAATTCAA+AGG | - | chr5_2:34925222-34925241 | None:intergenic | 45.0% | |
| ATATCCCGTGCTAGATGAAC+TGG | + | chr5_2:34925908-34925927 | Msa0768550:CDS | 45.0% | |
| ATCTTCGAACACGTTCCAGA+AGG | - | chr5_2:34925953-34925972 | None:intergenic | 45.0% | |
| GAACATCTCATGGATGACGA+TGG | + | chr5_2:34926125-34926144 | Msa0768550:CDS | 45.0% | |
| ATGTTGCCAAGGACTTTCAG+CGG | + | chr5_2:34926296-34926315 | Msa0768550:CDS | 45.0% | |
| ! | GCTTCCAGCAACATTTCTAG+CGG | - | chr5_2:34926386-34926405 | None:intergenic | 45.0% |
| AAATATTGCGGCCACCAATG+TGG | - | chr5_2:34926734-34926753 | None:intergenic | 45.0% | |
| CATTCCAAATACTCCTGCCA+CGG | - | chr5_2:34926761-34926780 | None:intergenic | 45.0% | |
| AGCCATGTGAAAACAGCACT+TGG | - | chr5_2:34927016-34927035 | None:intergenic | 45.0% | |
| !! | ATCTTGGCTTGCACCAACAA+TGG | - | chr5_2:34927075-34927094 | None:intergenic | 45.0% |
| ACGGAATTACGGAGACATCT+TGG | - | chr5_2:34927091-34927110 | None:intergenic | 45.0% | |
| TACAAAGAGCAGAGATGGGA+AGG | - | chr5_2:34927136-34927155 | None:intergenic | 45.0% | |
| ATAGTGATTGGGGGTGGGTA+AGG | + | chr5_2:34923774-34923793 | Msa0768550:intron | 50.0% | |
| TAGTGATTGGGGGTGGGTAA+GGG | + | chr5_2:34923775-34923794 | Msa0768550:intron | 50.0% | |
| ACACTACACGTGTCAGACGT+CGG | - | chr5_2:34924168-34924187 | None:intergenic | 50.0% | |
| TGACGTGTGAGTGTCTGTGT+CGG | + | chr5_2:34924248-34924267 | Msa0768550:intron | 50.0% | |
| TTAACAGGCAAGCGAATCGC+AGG | + | chr5_2:34924539-34924558 | Msa0768550:CDS | 50.0% | |
| TAACAGGCAAGCGAATCGCA+GGG | + | chr5_2:34924540-34924559 | Msa0768550:CDS | 50.0% | |
| TTCCATGACCTCTCTGCTTC+AGG | - | chr5_2:34924579-34924598 | None:intergenic | 50.0% | |
| AGCAGAGAGGTCATGGAAGT+CGG | + | chr5_2:34924581-34924600 | Msa0768550:CDS | 50.0% | |
| CACTCGATGGTACTGTTGGT+CGG | + | chr5_2:34924821-34924840 | Msa0768550:CDS | 50.0% | |
| ATGGTACTGTTGGTCGGTAC+AGG | + | chr5_2:34924827-34924846 | Msa0768550:CDS | 50.0% | |
| CGGCTCCAGAGAGAAAAATC+TGG | + | chr5_2:34924865-34924884 | Msa0768550:CDS | 50.0% | |
| ! | TATGAGGGTACGGCATTGAG+TGG | + | chr5_2:34924984-34925003 | Msa0768550:intron | 50.0% |
| TGAGGCCAGTTCATCTAGCA+CGG | - | chr5_2:34925916-34925935 | None:intergenic | 50.0% | |
| GAACTCGCTGAGTCAAAGCA+AGG | - | chr5_2:34925989-34926008 | None:intergenic | 50.0% | |
| CATGGATGACGATGGTGACA+TGG | + | chr5_2:34926133-34926152 | Msa0768550:CDS | 50.0% | |
| TCAGCCGCTAGAAATGTTGC+TGG | + | chr5_2:34926379-34926398 | Msa0768550:CDS | 50.0% | |
| GCTTCTTACAGCAGCCACAT+TGG | + | chr5_2:34926717-34926736 | Msa0768550:CDS | 50.0% | |
| TCTTACAGCAGCCACATTGG+TGG | + | chr5_2:34926720-34926739 | Msa0768550:CDS | 50.0% | |
| GAGGTCATGGAAGTCGGTCT+TGG | + | chr5_2:34924587-34924606 | Msa0768550:CDS | 55.0% | |
| !! | TAGGGCTCTGGAGTTAGCTC+TGG | + | chr5_2:34925229-34925248 | Msa0768550:CDS | 55.0% |
| GAGGCCAGTTCATCTAGCAC+GGG | - | chr5_2:34925915-34925934 | None:intergenic | 55.0% | |
| TGACCGCTCTGGTGAAGTAG+GGG | - | chr5_2:34926261-34926280 | None:intergenic | 55.0% | |
| GTGACCGCTCTGGTGAAGTA+GGG | - | chr5_2:34926262-34926281 | None:intergenic | 55.0% | |
| AGTGACCGCTCTGGTGAAGT+AGG | - | chr5_2:34926263-34926282 | None:intergenic | 55.0% | |
| TCACCAGAGCGGTCACTTAG+TGG | + | chr5_2:34926266-34926285 | Msa0768550:CDS | 55.0% | |
| CACCAGAGCGGTCACTTAGT+GGG | + | chr5_2:34926267-34926286 | Msa0768550:CDS | 55.0% | |
| GTGGGCTTCAGATGTTGCCA+AGG | + | chr5_2:34926285-34926304 | Msa0768550:CDS | 55.0% | |
| CCAATGCCGCTGAAAGTCCT+TGG | - | chr5_2:34926305-34926324 | None:intergenic | 55.0% | |
| CCAAGGACTTTCAGCGGCAT+TGG | + | chr5_2:34926302-34926321 | Msa0768550:CDS | 55.0% | |
| TGCCACGGCGGCAAATATTG+CGG | - | chr5_2:34926746-34926765 | None:intergenic | 55.0% | |
| TCCAAATACTCCTGCCACGG+CGG | - | chr5_2:34926758-34926777 | None:intergenic | 55.0% | |
| TGATTGGGGGTGGGTAAGGG+TGG | + | chr5_2:34923778-34923797 | Msa0768550:intron | 60.0% | |
| GGCCTGAAGCAGAGAGGTCA+TGG | + | chr5_2:34924574-34924593 | Msa0768550:CDS | 60.0% | |
| CAGCCCCTACTTCACCAGAG+CGG | + | chr5_2:34926255-34926274 | Msa0768550:CDS | 60.0% | |
| AGCCCACTAAGTGACCGCTC+TGG | - | chr5_2:34926272-34926291 | None:intergenic | 60.0% | |
| GCAATATTTGCCGCCGTGGC+AGG | + | chr5_2:34926745-34926764 | Msa0768550:CDS | 60.0% | |
| AGGCAAGCGAATCGCAGGGC+TGG | + | chr5_2:34924544-34924563 | Msa0768550:CDS | 65.0% | |
| GGCCGCAATATTTGCCGCCG+TGG | + | chr5_2:34926741-34926760 | Msa0768550:CDS | 65.0% | |
| !! | GCCGCCGTGGCAGGAGTATT+TGG | + | chr5_2:34926754-34926773 | Msa0768550:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 34923598 | 34927225 | 34923598 | ID=Msa0768550;Name=Msa0768550 |
| chr5_2 | mRNA | 34923598 | 34927225 | 34923598 | ID=Msa0768550-mRNA-1;Parent=Msa0768550;Name=Msa0768550-mRNA-1;_AED=0.06;_eAED=0.06;_QI=185|1|1|1|0.83|0.71|7|313|405 |
| chr5_2 | exon | 34923598 | 34923694 | 34923598 | ID=Msa0768550-mRNA-1:exon:11959;Parent=Msa0768550-mRNA-1 |
| chr5_2 | exon | 34924399 | 34924886 | 34924399 | ID=Msa0768550-mRNA-1:exon:11960;Parent=Msa0768550-mRNA-1 |
| chr5_2 | exon | 34925210 | 34925280 | 34925210 | ID=Msa0768550-mRNA-1:exon:11961;Parent=Msa0768550-mRNA-1 |
| chr5_2 | exon | 34925885 | 34926013 | 34925885 | ID=Msa0768550-mRNA-1:exon:11962;Parent=Msa0768550-mRNA-1 |
| chr5_2 | exon | 34926110 | 34926448 | 34926110 | ID=Msa0768550-mRNA-1:exon:11963;Parent=Msa0768550-mRNA-1 |
| chr5_2 | exon | 34926537 | 34926584 | 34926537 | ID=Msa0768550-mRNA-1:exon:11964;Parent=Msa0768550-mRNA-1 |
| chr5_2 | exon | 34926682 | 34927225 | 34926682 | ID=Msa0768550-mRNA-1:exon:11965;Parent=Msa0768550-mRNA-1 |
| chr5_2 | five_prime_UTR | 34923598 | 34923694 | 34923598 | ID=Msa0768550-mRNA-1:five_prime_utr;Parent=Msa0768550-mRNA-1 |
| chr5_2 | five_prime_UTR | 34924399 | 34924486 | 34924399 | ID=Msa0768550-mRNA-1:five_prime_utr;Parent=Msa0768550-mRNA-1 |
| chr5_2 | CDS | 34924487 | 34924886 | 34924487 | ID=Msa0768550-mRNA-1:cds;Parent=Msa0768550-mRNA-1 |
| chr5_2 | CDS | 34925210 | 34925280 | 34925210 | ID=Msa0768550-mRNA-1:cds;Parent=Msa0768550-mRNA-1 |
| chr5_2 | CDS | 34925885 | 34926013 | 34925885 | ID=Msa0768550-mRNA-1:cds;Parent=Msa0768550-mRNA-1 |
| chr5_2 | CDS | 34926110 | 34926448 | 34926110 | ID=Msa0768550-mRNA-1:cds;Parent=Msa0768550-mRNA-1 |
| chr5_2 | CDS | 34926537 | 34926584 | 34926537 | ID=Msa0768550-mRNA-1:cds;Parent=Msa0768550-mRNA-1 |
| chr5_2 | CDS | 34926682 | 34926912 | 34926682 | ID=Msa0768550-mRNA-1:cds;Parent=Msa0768550-mRNA-1 |
| chr5_2 | three_prime_UTR | 34926913 | 34927225 | 34926913 | ID=Msa0768550-mRNA-1:three_prime_utr;Parent=Msa0768550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
