Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0771690 | sp|Q7Z9L3|EXGA_ASPOR | 37.313 | 268 | 149 | 11 | 189 | 451 | 48 | 301 | 1.93e-40 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0771690 | G7KA56 | 95.059 | 506 | 23 | 2 | 2 | 506 | 1 | 505 | 0.0 | 989 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0771690 | Msa0809740 | 0.811246 | 7.706538e-51 | -8.615850e-47 |
| Msa0771690 | Msa0850240 | 0.831202 | 1.908466e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0771690 | MtrunA17_Chr5g0425401 | 95.059 | 506 | 23 | 2 | 2 | 506 | 1 | 505 | 0.0 | 989 |
| Msa0771690 | MtrunA17_Chr5g0425361 | 80.906 | 508 | 94 | 3 | 1 | 506 | 1 | 507 | 0.0 | 867 |
| Msa0771690 | MtrunA17_Chr3g0079451 | 56.118 | 474 | 197 | 6 | 37 | 506 | 7 | 473 | 0.0 | 560 |
| Msa0771690 | MtrunA17_Chr8g0382641 | 53.937 | 508 | 218 | 8 | 10 | 506 | 4 | 506 | 0.0 | 560 |
| Msa0771690 | MtrunA17_Chr3g0079461 | 56.448 | 473 | 197 | 5 | 37 | 506 | 31 | 497 | 0.0 | 558 |
| Msa0771690 | MtrunA17_Chr3g0079431 | 53.878 | 490 | 214 | 8 | 18 | 506 | 11 | 489 | 0.0 | 545 |
| Msa0771690 | MtrunA17_Chr3g0079441 | 52.642 | 492 | 219 | 8 | 18 | 506 | 11 | 491 | 0.0 | 536 |
| Msa0771690 | MtrunA17_Chr3g0123661 | 47.257 | 474 | 246 | 2 | 35 | 506 | 34 | 505 | 5.71e-166 | 480 |
| Msa0771690 | MtrunA17_Chr5g0425351 | 59.649 | 228 | 50 | 3 | 221 | 448 | 19 | 204 | 7.33e-84 | 258 |
| Msa0771690 | MtrunA17_Chr5g0425301 | 75.000 | 76 | 19 | 0 | 378 | 453 | 2 | 77 | 5.20e-34 | 123 |
| Msa0771690 | MtrunA17_Chr5g0425291 | 68.254 | 63 | 19 | 1 | 219 | 281 | 19 | 80 | 2.62e-22 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 126 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAGAAACTTTCAGATTT+AGG | 0.092819 | 5_2:-44856937 | Msa0771690:CDS |
| GCCCATAACCATTTGTTATT+TGG | 0.116919 | 5_2:+44856431 | None:intergenic |
| ATCATATATAATCATAATTT+TGG | 0.132461 | 5_2:+44852280 | None:intergenic |
| TTTACATTCTTCTCAGTAAA+TGG | 0.143116 | 5_2:+44852164 | None:intergenic |
| AAAGCTCAATTAGATGTTTA+TGG | 0.183154 | 5_2:-44852405 | Msa0771690:CDS |
| CAAAGAAACTTTCAGATTTA+GGG | 0.194710 | 5_2:-44856936 | Msa0771690:CDS |
| CATTCCAAACAAAGACTTCT+TGG | 0.218905 | 5_2:-44857336 | Msa0771690:intron |
| CCCACTAGCTAATGGCCTTA+TGG | 0.221566 | 5_2:-44853012 | Msa0771690:CDS |
| TGTCACTTTCTTTAACAATA+TGG | 0.227895 | 5_2:+44856834 | None:intergenic |
| CAACATTTGGGTATGCATAT+TGG | 0.248323 | 5_2:-44852377 | Msa0771690:CDS |
| TTAGTTGTATTGTATATATA+GGG | 0.278597 | 5_2:+44857590 | None:intergenic |
| AACATTTGGGTATGCATATT+GGG | 0.291161 | 5_2:-44852376 | Msa0771690:CDS |
| ATTAGTTGTATTGTATATAT+AGG | 0.292325 | 5_2:+44857589 | None:intergenic |
| GTATTATCAACCTCAAAATA+TGG | 0.292776 | 5_2:-44857496 | Msa0771690:CDS |
| GTCCACTACTACAGCATCTT+TGG | 0.300446 | 5_2:-44852975 | Msa0771690:CDS |
| TTCAATCTAAACTTCTGATT+TGG | 0.308423 | 5_2:+44857422 | None:intergenic |
| CCACTAGCTAATGGCCTTAT+GGG | 0.309837 | 5_2:-44853011 | Msa0771690:CDS |
| TTCCAAATAACAAATGGTTA+TGG | 0.317163 | 5_2:-44856433 | Msa0771690:CDS |
| TGATGTATCTGCAGAAAATA+TGG | 0.318498 | 5_2:-44853643 | Msa0771690:intron |
| AATGATACCTTCATTATTTG+TGG | 0.328223 | 5_2:+44856397 | None:intergenic |
| CTACAAGATGGTAGTCCTTC+TGG | 0.333119 | 5_2:+44851997 | Msa0771680:CDS |
| CTAACCAAGAAGTCTTTGTT+TGG | 0.336732 | 5_2:+44857332 | None:intergenic |
| GCAAACCGCTCAAGTGCTTC+TGG | 0.344807 | 5_2:-44857091 | Msa0771690:CDS |
| GCAGCACCTGGCTCTCAAAA+TGG | 0.347913 | 5_2:-44853595 | Msa0771690:CDS |
| GTTGGTTGGTTACTGAAGGT+TGG | 0.362723 | 5_2:-44857382 | Msa0771690:CDS |
| TCCAAATAACAAATGGTTAT+GGG | 0.378270 | 5_2:-44856432 | Msa0771690:CDS |
| GTGGTGTTCTCAAATAGATT+AGG | 0.388703 | 5_2:-44853059 | Msa0771690:CDS |
| AAGCTCAATTAGATGTTTAT+GGG | 0.389186 | 5_2:-44852404 | Msa0771690:CDS |
| AAATATTTGTGTGCAGAGTC+TGG | 0.390828 | 5_2:-44857133 | Msa0771690:CDS |
| TGCATTGTCTAGTGCTTGTA+AGG | 0.406879 | 5_2:+44854035 | None:intergenic |
| GCACTCTTCTACTGTATTTG+TGG | 0.407650 | 5_2:-44853078 | Msa0771690:CDS |
| TTACATTCTTCTCAGTAAAT+GGG | 0.410046 | 5_2:+44852165 | None:intergenic |
| AAGAGACGGTTCACAAGAAT+GGG | 0.412119 | 5_2:-44853554 | Msa0771690:CDS |
| TTGTAATGACAATTGCTGAT+AGG | 0.413076 | 5_2:-44856468 | Msa0771690:CDS |
| CCGCTCAAGTGCTTCTGGTT+GGG | 0.413588 | 5_2:-44857086 | Msa0771690:CDS |
| TGAATTTGATTCAAGGTGAA+TGG | 0.419560 | 5_2:-44852482 | Msa0771690:intron |
| GTTTATGGGAGAGCAACATT+TGG | 0.420478 | 5_2:-44852390 | Msa0771690:CDS |
| CAAGAGACGGTTCACAAGAA+TGG | 0.421390 | 5_2:-44853555 | Msa0771690:CDS |
| CAAGAAGTCTTTGTTTGGAA+TGG | 0.421693 | 5_2:+44857337 | None:intergenic |
| AGAGTGAAGTACTTAAATAA+AGG | 0.430103 | 5_2:+44852237 | None:intergenic |
| TATATATAGGGGATAGGTGA+TGG | 0.430987 | 5_2:+44857602 | None:intergenic |
| ATGGAAAGTTTCAGAATCAA+TGG | 0.438369 | 5_2:+44856853 | None:intergenic |
| TTCTTCTCAGTAAATGGGAT+TGG | 0.442442 | 5_2:+44852170 | None:intergenic |
| TTTATGGGAGAGCAACATTT+GGG | 0.445671 | 5_2:-44852389 | Msa0771690:CDS |
| GAATTCTTCCCACTAGCTAA+TGG | 0.452097 | 5_2:-44853020 | Msa0771690:CDS |
| GTTCGAATCAAAGCTTCAAA+TGG | 0.457248 | 5_2:-44856800 | Msa0771690:CDS |
| AATGTATGCACCTTGCAGTT+AGG | 0.464964 | 5_2:+44853485 | None:intergenic |
| AGAGGATCTGCAGGCAAAGA+TGG | 0.465525 | 5_2:-44856554 | Msa0771690:intron |
| ATATATAGGGGATAGGTGAT+GGG | 0.469078 | 5_2:+44857603 | None:intergenic |
| AAACAATTTGTGGGGTTGGA+TGG | 0.470467 | 5_2:-44856905 | Msa0771690:CDS |
| GTGTTTAACAAACAATTTGT+GGG | 0.480516 | 5_2:-44856914 | Msa0771690:CDS |
| ACGTAGGGCCGTGGTGGAGT+TGG | 0.480553 | 5_2:+44854066 | None:intergenic |
| GGTGTTTAACAAACAATTTG+TGG | 0.480723 | 5_2:-44856915 | Msa0771690:CDS |
| TTAGAATTCCAGTGGGTTGG+TGG | 0.482622 | 5_2:-44854101 | Msa0771690:CDS |
| TAACAAACAATTTGTGGGGT+TGG | 0.491783 | 5_2:-44856909 | Msa0771690:CDS |
| GGTGAATTCCAAATAACAAA+TGG | 0.496193 | 5_2:-44856439 | Msa0771690:CDS |
| GAATTTGATTCAAGGTGAAT+GGG | 0.499572 | 5_2:-44852481 | Msa0771690:intron |
| ATTGATCTTCATGCAGCACC+TGG | 0.500988 | 5_2:-44853607 | Msa0771690:CDS |
| TTGAAAGCAGTTAACCTTGG+TGG | 0.501297 | 5_2:-44857404 | Msa0771690:CDS |
| ACCGCTCAAGTGCTTCTGGT+TGG | 0.501991 | 5_2:-44857087 | Msa0771690:CDS |
| GTTCATATTTCCAGGAACAT+TGG | 0.506200 | 5_2:-44854182 | Msa0771690:intron |
| GGTGGTTGGTTGGTTACTGA+AGG | 0.508219 | 5_2:-44857386 | Msa0771690:CDS |
| AGTGTTGCACCTGGTGATAG+AGG | 0.514143 | 5_2:+44853149 | None:intergenic |
| GAACCTCCCACGTAGGGCCG+TGG | 0.516443 | 5_2:+44854057 | None:intergenic |
| TTCGAGTTCATAGCTAGGAA+TGG | 0.524880 | 5_2:-44854135 | Msa0771690:CDS |
| CATCAATCACTGATCCCATA+AGG | 0.530630 | 5_2:+44852997 | None:intergenic |
| TGAAGCTTTGATTCGAACAC+GGG | 0.534321 | 5_2:+44856805 | None:intergenic |
| CAGTTAGAATTCCAGTGGGT+TGG | 0.535426 | 5_2:-44854104 | Msa0771690:CDS |
| TTCAAATGGATACTTCATAC+AGG | 0.536866 | 5_2:-44856786 | Msa0771690:intron |
| GAAAGCTCCACAAATAATGA+AGG | 0.536911 | 5_2:-44856404 | Msa0771690:intron |
| ACAAACACTGGAGTCTAGAA+TGG | 0.537188 | 5_2:-44852338 | Msa0771690:CDS |
| TGCTGAGTGGCAAGTTAAAG+AGG | 0.538125 | 5_2:-44852457 | Msa0771690:CDS |
| CTAGAATGGATGATGAAGAA+TGG | 0.541024 | 5_2:-44852324 | Msa0771690:CDS |
| CTCCAAAGATGCTGTAGTAG+TGG | 0.542320 | 5_2:+44852973 | None:intergenic |
| CACTTGAGCGGTTTGCAACA+AGG | 0.542938 | 5_2:+44857098 | None:intergenic |
| AGTTAACCTTGGTGGTTGGT+TGG | 0.544377 | 5_2:-44857396 | Msa0771690:CDS |
| AGTGACTGCTGATGTATCAT+TGG | 0.547052 | 5_2:-44856524 | Msa0771690:CDS |
| CTTGCTATCCACCAACCCAC+TGG | 0.547778 | 5_2:+44854093 | None:intergenic |
| GGAATGGCATCAAAGAGAGA+AGG | 0.557255 | 5_2:+44857353 | None:intergenic |
| AACTCCACCACGGCCCTACG+TGG | 0.557690 | 5_2:-44854064 | Msa0771690:CDS |
| CCTCCCACGTAGGGCCGTGG+TGG | 0.558370 | 5_2:+44854060 | None:intergenic |
| TTGAACAAATACTACAAGGA+TGG | 0.560573 | 5_2:-44853119 | Msa0771690:CDS |
| AGTTCAACTGCATAAAGACT+TGG | 0.561869 | 5_2:+44853182 | None:intergenic |
| TGGGAAGAATTCTCTAGGCA+TGG | 0.562307 | 5_2:+44853031 | None:intergenic |
| TGAGCGGTTTGCAACAAGGA+TGG | 0.571791 | 5_2:+44857102 | None:intergenic |
| GCTAGTGGGAAGAATTCTCT+AGG | 0.574726 | 5_2:+44853026 | None:intergenic |
| CTAAATGAGCCTCTATCACC+AGG | 0.576495 | 5_2:-44853158 | Msa0771690:CDS |
| GTGAAATTGGCACTACAAGA+TGG | 0.577308 | 5_2:+44851985 | Msa0771680:CDS |
| AGATTGAAAGCAGTTAACCT+TGG | 0.578195 | 5_2:-44857407 | Msa0771690:CDS |
| TAGTTGTATTGTATATATAG+GGG | 0.579032 | 5_2:+44857591 | None:intergenic |
| TGTAAGGAACCTCCCACGTA+GGG | 0.581415 | 5_2:+44854051 | None:intergenic |
| CTGATTTGGTCTCCCATGTG+TGG | 0.583392 | 5_2:+44857436 | None:intergenic |
| CCATAAGGCCATTAGCTAGT+GGG | 0.583955 | 5_2:+44853012 | None:intergenic |
| CCCATAAGGCCATTAGCTAG+TGG | 0.585533 | 5_2:+44853011 | None:intergenic |
| ATGTATCATTGGTCAACGGA+TGG | 0.585711 | 5_2:-44856513 | Msa0771690:CDS |
| CCACCACGGCCCTACGTGGG+AGG | 0.587064 | 5_2:-44854060 | Msa0771690:CDS |
| TCAAGAACGTGAACAAACAC+TGG | 0.588352 | 5_2:-44852350 | Msa0771690:CDS |
| CCCAACCAGAAGCACTTGAG+CGG | 0.589670 | 5_2:+44857086 | None:intergenic |
| GTATTGTATATATAGGGGAT+AGG | 0.590583 | 5_2:+44857596 | None:intergenic |
| TCTGCAGGCAAAGATGGAAG+AGG | 0.591740 | 5_2:-44856548 | Msa0771690:intron |
| GTTATGCTTTCTACCACACA+TGG | 0.592026 | 5_2:-44857449 | Msa0771690:CDS |
| AAACTAGTTCAAAACACGAC+CGG | 0.595657 | 5_2:-44852099 | Msa0771690:three_prime_UTR |
| TTGTGTGCAGAGTCTGGAGG+AGG | 0.597579 | 5_2:-44857127 | Msa0771690:CDS |
| ATGATTTCGAGTTCATAGCT+AGG | 0.598594 | 5_2:-44854140 | Msa0771690:CDS |
| AGCTTTGATTCGAACACGGG+TGG | 0.598897 | 5_2:+44856808 | None:intergenic |
| TTGAAGCTTTGATTCGAACA+CGG | 0.599020 | 5_2:+44856804 | None:intergenic |
| TATATAGGGGATAGGTGATG+GGG | 0.604194 | 5_2:+44857604 | None:intergenic |
| GAGCATAGCTCTTCAAGAGA+CGG | 0.613874 | 5_2:-44853568 | Msa0771690:CDS |
| AAATGCAGTTAGAATTCCAG+TGG | 0.619155 | 5_2:-44854109 | Msa0771690:CDS |
| AAACTTTCTAGTGTTGCACC+TGG | 0.623140 | 5_2:+44853140 | None:intergenic |
| TTGTAAGGAACCTCCCACGT+AGG | 0.623751 | 5_2:+44854050 | None:intergenic |
| TGTTTAACAAACAATTTGTG+GGG | 0.625604 | 5_2:-44856913 | Msa0771690:CDS |
| ACTCCACCACGGCCCTACGT+GGG | 0.641440 | 5_2:-44854063 | Msa0771690:CDS |
| AAGCAGTTAACCTTGGTGGT+TGG | 0.646493 | 5_2:-44857400 | Msa0771690:CDS |
| ACAATTGCTGATAGGATGCA+AGG | 0.648620 | 5_2:-44856460 | Msa0771690:CDS |
| TCATTGACTTCCTAACTGCA+AGG | 0.656279 | 5_2:-44853495 | Msa0771690:intron |
| AAGTTTGAACAAATACTACA+AGG | 0.657848 | 5_2:-44853123 | Msa0771690:CDS |
| TTATGCTTTCTACCACACAT+GGG | 0.677451 | 5_2:-44857448 | Msa0771690:CDS |
| AATGCAGTTAGAATTCCAGT+GGG | 0.681563 | 5_2:-44854108 | Msa0771690:CDS |
| GAAGAATTCTCTAGGCATGG+AGG | 0.695443 | 5_2:+44853034 | None:intergenic |
| GCTGATGTATCATTGGTCAA+CGG | 0.707292 | 5_2:-44856517 | Msa0771690:CDS |
| CAGTAACCAACCAACCACCA+AGG | 0.710651 | 5_2:+44857390 | None:intergenic |
| AGAGACGGTTCACAAGAATG+GGG | 0.726094 | 5_2:-44853553 | Msa0771690:CDS |
| AAGGTGAATGGGTTGCTGAG+TGG | 0.733038 | 5_2:-44852470 | Msa0771690:CDS |
| CAAGTGATCCAACTCCACCA+CGG | 0.740840 | 5_2:-44854074 | Msa0771690:CDS |
| TATTTGTGTGCAGAGTCTGG+AGG | 0.745186 | 5_2:-44857130 | Msa0771690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTTATAATTTTTTTAG+AGG | - | chr5_2:44853009-44853028 | Msa0771690:CDS | 10.0% |
| !! | TTAGAATGATATAAAATTTA+GGG | + | chr5_2:44853759-44853778 | None:intergenic | 10.0% |
| !! | TTAACAAAATGAAATATAAT+TGG | - | chr5_2:44854081-44854100 | Msa0771690:CDS | 10.0% |
| !! | TAACAAAATGAAATATAATT+GGG | - | chr5_2:44854082-44854101 | Msa0771690:CDS | 10.0% |
| !!! | AATTAAATTTGCTTATATTT+AGG | + | chr5_2:44854241-44854260 | None:intergenic | 10.0% |
| !!! | ATAAGCAAATTTAATTTTTT+AGG | - | chr5_2:44854245-44854264 | Msa0771690:intron | 10.0% |
| !! | TATGATAAAAAAAAATTGAA+TGG | + | chr5_2:44854418-44854437 | None:intergenic | 10.0% |
| !!! | GAAAATATACTTTTTTTTTA+AGG | + | chr5_2:44854786-44854805 | None:intergenic | 10.0% |
| !! | TTATTCAATAATTATTATTG+AGG | + | chr5_2:44855229-44855248 | None:intergenic | 10.0% |
| !! | AATAATTATTACTAATATCA+TGG | + | chr5_2:44856356-44856375 | None:intergenic | 10.0% |
| !! | TATTTAATAAACAAATAACA+TGG | + | chr5_2:44856379-44856398 | None:intergenic | 10.0% |
| !! | AAAACAATTTATATTAAGAA+TGG | + | chr5_2:44856806-44856825 | None:intergenic | 10.0% |
| !!! | ATCATATATAATCATAATTT+TGG | + | chr5_2:44857349-44857368 | None:intergenic | 10.0% |
| !! | TTAGTTGTATTGTATATATA+GGG | + | chr5_2:44852039-44852058 | None:intergenic | 15.0% |
| !! | ATTAGTTGTATTGTATATAT+AGG | + | chr5_2:44852040-44852059 | None:intergenic | 15.0% |
| !!! | TCTATATATTTTTAATAGGA+TGG | - | chr5_2:44852436-44852455 | Msa0771690:CDS | 15.0% |
| !! | TAAAAATATAGTATATACTG+CGG | + | chr5_2:44852876-44852895 | None:intergenic | 15.0% |
| !! | TATTATTGTACTATAAAAAG+AGG | - | chr5_2:44853040-44853059 | Msa0771690:CDS | 15.0% |
| !! | GTTAGAATGATATAAAATTT+AGG | + | chr5_2:44853760-44853779 | None:intergenic | 15.0% |
| !!! | AAATTTTATATCATTCTAAC+CGG | - | chr5_2:44853760-44853779 | Msa0771690:intron | 15.0% |
| !!! | TGTTAGAATATTTTTGTTTT+TGG | - | chr5_2:44853944-44853963 | Msa0771690:intron | 15.0% |
| !!! | AAACAACAATGATTTTTTTT+TGG | - | chr5_2:44854135-44854154 | Msa0771690:CDS | 15.0% |
| !!! | AACAACAATGATTTTTTTTT+GGG | - | chr5_2:44854136-44854155 | Msa0771690:CDS | 15.0% |
| !!! | AATCTTAATAATTGATAATG+TGG | + | chr5_2:44854518-44854537 | None:intergenic | 15.0% |
| !!! | ATCTTAATAATTGATAATGT+GGG | + | chr5_2:44854517-44854536 | None:intergenic | 15.0% |
| !!! | AATCTTAATAATTGATAATG+TGG | + | chr5_2:44854518-44854537 | None:intergenic | 15.0% |
| !! | CAAAAATAAGTTTCTATATT+TGG | + | chr5_2:44854926-44854945 | None:intergenic | 15.0% |
| !! | AAACACGAAAAAAAATAATT+CGG | + | chr5_2:44855387-44855406 | None:intergenic | 15.0% |
| !! | TAGTTGTATTGTATATATAG+GGG | + | chr5_2:44852038-44852057 | None:intergenic | 20.0% |
| !!! | TTTAAAGTAAAAAAGTGAAG+AGG | - | chr5_2:44852069-44852088 | Msa0771690:three_prime_UTR | 20.0% |
| !!! | ATATTTTTAATAGGATGGAA+CGG | - | chr5_2:44852441-44852460 | Msa0771690:CDS | 20.0% |
| !! | ACACAAAATAATCAAATATG+AGG | + | chr5_2:44852649-44852668 | None:intergenic | 20.0% |
| !!! | CAAATATTGAAATTTTGTGT+AGG | + | chr5_2:44852945-44852964 | None:intergenic | 20.0% |
| !! | TTGTCATTACAAAAATTGTT+GGG | + | chr5_2:44853150-44853169 | None:intergenic | 20.0% |
| !! | ATTGTCATTACAAAAATTGT+TGG | + | chr5_2:44853151-44853170 | None:intergenic | 20.0% |
| !!! | ACAACTTTGATTTTTATCAT+CGG | + | chr5_2:44853668-44853687 | None:intergenic | 20.0% |
| !!! | TAATAAGCTTTTTTGTTTGA+AGG | - | chr5_2:44853701-44853720 | Msa0771690:intron | 20.0% |
| !!! | ATGAAGTGTTAATATTTCAT+TGG | + | chr5_2:44853813-44853832 | None:intergenic | 20.0% |
| !! | ATGAAATATAATTGGGAAAA+AGG | - | chr5_2:44854089-44854108 | Msa0771690:CDS | 20.0% |
| !! | TGAAATATAATTGGGAAAAA+GGG | - | chr5_2:44854090-44854109 | Msa0771690:CDS | 20.0% |
| !! | TATTCAATTAATGATGTATG+TGG | - | chr5_2:44854270-44854289 | Msa0771690:intron | 20.0% |
| !!! | AGTCAAATTTGCTTATATTT+AGG | - | chr5_2:44854338-44854357 | Msa0771690:intron | 20.0% |
| !! | AAAAAACAGAGAAAATAATG+CGG | - | chr5_2:44854581-44854600 | Msa0771690:intron | 20.0% |
| !!! | TCTTAATAATTGATAATGTG+GGG | + | chr5_2:44854516-44854535 | None:intergenic | 20.0% |
| !! | CTTAATAAGTGTATAAAAAG+TGG | + | chr5_2:44854734-44854753 | None:intergenic | 20.0% |
| !!! | CACTTTTTATACACTTATTA+AGG | - | chr5_2:44854732-44854751 | Msa0771690:intron | 20.0% |
| !! | ATAAAAAAGACTGTCTTAAT+TGG | + | chr5_2:44854860-44854879 | None:intergenic | 20.0% |
| !!! | TAAGACAGTCTTTTTTATAT+AGG | - | chr5_2:44854862-44854881 | Msa0771690:intron | 20.0% |
| !! | CATATTAAGGTAATCTTATT+GGG | - | chr5_2:44855094-44855113 | Msa0771690:intron | 20.0% |
| !! | AACACGAAAAAAAATAATTC+GGG | + | chr5_2:44855386-44855405 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTCGTGTTTTCTA+TGG | - | chr5_2:44855391-44855410 | Msa0771690:intron | 20.0% |
| !! | TTTAAATGTCACTGATAATA+GGG | - | chr5_2:44855953-44855972 | Msa0771690:intron | 20.0% |
| !!! | TCATGGTCAATTATTTTTTA+AGG | + | chr5_2:44856939-44856958 | None:intergenic | 20.0% |
| !!! | TATCGTTTTTCTTTTATACT+GGG | + | chr5_2:44857002-44857021 | None:intergenic | 20.0% |
| !!! | ATATCGTTTTTCTTTTATAC+TGG | + | chr5_2:44857003-44857022 | None:intergenic | 20.0% |
| !! | AAAAATGACTACAAAAGATT+TGG | - | chr5_2:44857197-44857216 | Msa0771690:intron | 20.0% |
| !! | AATAAAAACTTTGTCTAAAC+CGG | + | chr5_2:44857549-44857568 | None:intergenic | 20.0% |
| ! | GTATTATCAACCTCAAAATA+TGG | - | chr5_2:44852130-44852149 | Msa0771690:three_prime_UTR | 25.0% |
| !! | AGTTAAGAAACCATATTTTG+AGG | + | chr5_2:44852143-44852162 | None:intergenic | 25.0% |
| ! | TTCAATCTAAACTTCTGATT+TGG | + | chr5_2:44852207-44852226 | None:intergenic | 25.0% |
| !!! | TATTTTTAATAGGATGGAAC+GGG | - | chr5_2:44852442-44852461 | Msa0771690:CDS | 25.0% |
| ! | ACAAAGAAACTTTCAGATTT+AGG | - | chr5_2:44852689-44852708 | Msa0771690:intron | 25.0% |
| ! | CAAAGAAACTTTCAGATTTA+GGG | - | chr5_2:44852690-44852709 | Msa0771690:intron | 25.0% |
| ! | GTGTTTAACAAACAATTTGT+GGG | - | chr5_2:44852712-44852731 | Msa0771690:intron | 25.0% |
| ! | TGTTTAACAAACAATTTGTG+GGG | - | chr5_2:44852713-44852732 | Msa0771690:intron | 25.0% |
| !!! | TGTCACTTTCTTTAACAATA+TGG | + | chr5_2:44852795-44852814 | None:intergenic | 25.0% |
| ! | TTTCTTTAAATAGTGTCACA+AGG | - | chr5_2:44852965-44852984 | Msa0771690:CDS | 25.0% |
| ! | TTCTTTAAATAGTGTCACAA+GGG | - | chr5_2:44852966-44852985 | Msa0771690:CDS | 25.0% |
| ! | ACTATAAAAAGAGGAATTCA+TGG | - | chr5_2:44853049-44853068 | Msa0771690:CDS | 25.0% |
| ! | TTCCAAATAACAAATGGTTA+TGG | - | chr5_2:44853193-44853212 | Msa0771690:CDS | 25.0% |
| ! | TCCAAATAACAAATGGTTAT+GGG | - | chr5_2:44853194-44853213 | Msa0771690:CDS | 25.0% |
| ! | AATGATACCTTCATTATTTG+TGG | + | chr5_2:44853232-44853251 | None:intergenic | 25.0% |
| ! | CGTTGTAAACTAAAGTTATT+AGG | - | chr5_2:44853257-44853276 | Msa0771690:intron | 25.0% |
| !! | GTTATTAGGAGTATAACTTT+AGG | - | chr5_2:44853271-44853290 | Msa0771690:intron | 25.0% |
| !!! | AGAACTCATACATTTTAACT+AGG | + | chr5_2:44853314-44853333 | None:intergenic | 25.0% |
| !! | TTTTTGTCAAGTAGTTTAGT+GGG | + | chr5_2:44853338-44853357 | None:intergenic | 25.0% |
| !!! | TTTTTTGTCAAGTAGTTTAG+TGG | + | chr5_2:44853339-44853358 | None:intergenic | 25.0% |
| !!! | TTTAGAGTGATCTTTTAACT+AGG | + | chr5_2:44853372-44853391 | None:intergenic | 25.0% |
| ! | ATTCATACAAAAATCTAGCT+AGG | - | chr5_2:44853609-44853628 | Msa0771690:CDS | 25.0% |
| ! | CATAACTAAAATACTGAATG+AGG | - | chr5_2:44853634-44853653 | Msa0771690:intron | 25.0% |
| ! | TTGGAATCATATGATGTAAT+GGG | + | chr5_2:44853794-44853813 | None:intergenic | 25.0% |
| ! | ATTGGAATCATATGATGTAA+TGG | + | chr5_2:44853795-44853814 | None:intergenic | 25.0% |
| ! | CATAATATATGTAAGAGTCA+GGG | + | chr5_2:44854011-44854030 | None:intergenic | 25.0% |
| ! | ACATAATATATGTAAGAGTC+AGG | + | chr5_2:44854012-44854031 | None:intergenic | 25.0% |
| !! | AATTTGCTTATATTTAGGAC+CGG | + | chr5_2:44854343-44854362 | None:intergenic | 25.0% |
| ! | CATTCAATTAATGATGTATG+TGG | + | chr5_2:44854309-44854328 | None:intergenic | 25.0% |
| !! | AATTTGCTTATATTTAGGAC+CGG | - | chr5_2:44854343-44854362 | Msa0771690:intron | 25.0% |
| !! | TCTGTATAAGATTGATGATA+TGG | + | chr5_2:44854392-44854411 | None:intergenic | 25.0% |
| !!! | CTTTTTTTTTAAGGGAGAAA+GGG | + | chr5_2:44854777-44854796 | None:intergenic | 25.0% |
| !!! | ACTTTTTTTTTAAGGGAGAA+AGG | + | chr5_2:44854778-44854797 | None:intergenic | 25.0% |
| !! | ATGACCCTTTTTATATTAGT+TGG | - | chr5_2:44855059-44855078 | Msa0771690:intron | 25.0% |
| !! | TGACCCTTTTTATATTAGTT+GGG | - | chr5_2:44855060-44855079 | Msa0771690:intron | 25.0% |
| ! | CTACCCAACTAATATAAAAA+GGG | + | chr5_2:44855066-44855085 | None:intergenic | 25.0% |
| !! | CTTTTTATATTAGTTGGGTA+GGG | - | chr5_2:44855065-44855084 | Msa0771690:intron | 25.0% |
| ! | GCATATTAAGGTAATCTTAT+TGG | - | chr5_2:44855093-44855112 | Msa0771690:intron | 25.0% |
| ! | CATCAACTAACAAAAAAAGT+TGG | + | chr5_2:44855133-44855152 | None:intergenic | 25.0% |
| !!! | CAACTTTTTTTGTTAGTTGA+TGG | - | chr5_2:44855131-44855150 | Msa0771690:intron | 25.0% |
| ! | TTAAATATCCAGTAAGTCAA+TGG | + | chr5_2:44855168-44855187 | None:intergenic | 25.0% |
| !! | AATAATTCGGGTTTAATTCT+TGG | + | chr5_2:44855374-44855393 | None:intergenic | 25.0% |
| ! | TTGTAAATGTAAACGTTTCA+CGG | - | chr5_2:44855420-44855439 | Msa0771690:intron | 25.0% |
| !!! | AAGAATCTCATTTTAGTTTG+TGG | + | chr5_2:44855637-44855656 | None:intergenic | 25.0% |
| ! | TATACGGGATATTATTTAGA+AGG | + | chr5_2:44855706-44855725 | None:intergenic | 25.0% |
| ! | AACACAAACGCAAATATATA+CGG | + | chr5_2:44855722-44855741 | None:intergenic | 25.0% |
| ! | TTAGACGAAATCAATGTATT+TGG | + | chr5_2:44855767-44855786 | None:intergenic | 25.0% |
| ! | CTTTAAATGTCACTGATAAT+AGG | - | chr5_2:44855952-44855971 | Msa0771690:intron | 25.0% |
| ! | TGTCATATTATTATGAAGCA+CGG | + | chr5_2:44856316-44856335 | None:intergenic | 25.0% |
| !! | TCTACATTTTTATGTGTCAT+AGG | - | chr5_2:44856409-44856428 | Msa0771690:CDS | 25.0% |
| ! | AAGTTTGAACAAATACTACA+AGG | - | chr5_2:44856503-44856522 | Msa0771690:CDS | 25.0% |
| !! | AATTTTGTTACAACCTCAAA+TGG | - | chr5_2:44856744-44856763 | Msa0771690:intron | 25.0% |
| ! | TTGGAAATGACACTATAAAA+TGG | + | chr5_2:44856834-44856853 | None:intergenic | 25.0% |
| ! | AACAATGTGAATTTGATTCA+AGG | - | chr5_2:44857137-44857156 | Msa0771690:CDS | 25.0% |
| ! | AAAGCTCAATTAGATGTTTA+TGG | - | chr5_2:44857221-44857240 | Msa0771690:intron | 25.0% |
| ! | AAGCTCAATTAGATGTTTAT+GGG | - | chr5_2:44857222-44857241 | Msa0771690:intron | 25.0% |
| !! | AGAGTGAAGTACTTAAATAA+AGG | + | chr5_2:44857392-44857411 | None:intergenic | 25.0% |
| ! | TTACATTCTTCTCAGTAAAT+GGG | + | chr5_2:44857464-44857483 | None:intergenic | 25.0% |
| ! | TTTACATTCTTCTCAGTAAA+TGG | + | chr5_2:44857465-44857484 | None:intergenic | 25.0% |
| GTATTGTATATATAGGGGAT+AGG | + | chr5_2:44852033-44852052 | Msa0771680:CDS | 30.0% | |
| ! | TATTTTGTGTATTGCAGTTG+TGG | - | chr5_2:44852659-44852678 | Msa0771690:intron | 30.0% |
| GGTGTTTAACAAACAATTTG+TGG | - | chr5_2:44852711-44852730 | Msa0771690:intron | 30.0% | |
| ATGGAAAGTTTCAGAATCAA+TGG | + | chr5_2:44852776-44852795 | None:intergenic | 30.0% | |
| TTCAAATGGATACTTCATAC+AGG | - | chr5_2:44852840-44852859 | Msa0771690:intron | 30.0% | |
| AAATATAGTATATACTGCGG+AGG | + | chr5_2:44852873-44852892 | None:intergenic | 30.0% | |
| ! | CCGATCTTATTTATAACGAA+GGG | + | chr5_2:44852905-44852924 | None:intergenic | 30.0% |
| CCCTTCGTTATAAATAAGAT+CGG | - | chr5_2:44852902-44852921 | Msa0771690:CDS | 30.0% | |
| ! | TCCGATCTTATTTATAACGA+AGG | + | chr5_2:44852906-44852925 | None:intergenic | 30.0% |
| TTGTAATGACAATTGCTGAT+AGG | - | chr5_2:44853158-44853177 | Msa0771690:CDS | 30.0% | |
| GGTGAATTCCAAATAACAAA+TGG | - | chr5_2:44853187-44853206 | Msa0771690:CDS | 30.0% | |
| TATAACTCCACATCTATACA+AGG | - | chr5_2:44853450-44853469 | Msa0771690:intron | 30.0% | |
| ATTATTATAAGCTTGCCACT+AGG | - | chr5_2:44853515-44853534 | Msa0771690:CDS | 30.0% | |
| !!! | ATTTTTTTCAAGTAGCCTAG+TGG | + | chr5_2:44853533-44853552 | None:intergenic | 30.0% |
| TAATCTATACAACTAGTGCT+AGG | - | chr5_2:44853552-44853571 | Msa0771690:CDS | 30.0% | |
| GAATAAGTGCTTGAGAATAT+AGG | + | chr5_2:44854185-44854204 | None:intergenic | 30.0% | |
| GATGTATGTGGTTCATATTA+TGG | - | chr5_2:44854282-44854301 | Msa0771690:intron | 30.0% | |
| AAAAAAAAAGATACTCCCTC+CGG | + | chr5_2:44854365-44854384 | None:intergenic | 30.0% | |
| TTAATCTTGACCATTGTCAT+TGG | - | chr5_2:44854650-44854669 | Msa0771690:intron | 30.0% | |
| AAAGGGAAAATATACTTGGT+GGG | + | chr5_2:44854760-44854779 | None:intergenic | 30.0% | |
| GCTAGTTGCGATAATAAAAA+GGG | + | chr5_2:44854808-44854827 | None:intergenic | 30.0% | |
| TGCTAGTTGCGATAATAAAA+AGG | + | chr5_2:44854809-44854828 | None:intergenic | 30.0% | |
| CTTCTAAACTTGTACCTTAA+GGG | + | chr5_2:44854903-44854922 | None:intergenic | 30.0% | |
| !! | CATGTTAACTTGTGTCTTTA+GGG | + | chr5_2:44855042-44855061 | None:intergenic | 30.0% |
| !! | TCATGTTAACTTGTGTCTTT+AGG | + | chr5_2:44855043-44855062 | None:intergenic | 30.0% |
| CCTACCCAACTAATATAAAA+AGG | + | chr5_2:44855067-44855086 | None:intergenic | 30.0% | |
| ! | CCTTTTTATATTAGTTGGGT+AGG | - | chr5_2:44855064-44855083 | Msa0771690:intron | 30.0% |
| CAACTAACAAAAAAAGTTGG+TGG | + | chr5_2:44855130-44855149 | None:intergenic | 30.0% | |
| TAAACTGTAGAGATACTTCT+TGG | + | chr5_2:44855319-44855338 | None:intergenic | 30.0% | |
| TGTAAATGTAAACGTTTCAC+GGG | - | chr5_2:44855421-44855440 | Msa0771690:intron | 30.0% | |
| ! | ACTAGACAATGCATTTTTGT+GGG | - | chr5_2:44855601-44855620 | Msa0771690:intron | 30.0% |
| ACACAAACGCAAATATATAC+GGG | + | chr5_2:44855721-44855740 | None:intergenic | 30.0% | |
| ! | TGGTGATGTAAATGATTCAA+AGG | + | chr5_2:44855747-44855766 | None:intergenic | 30.0% |
| ATAGCCAAATGCAATTGATA+TGG | - | chr5_2:44855844-44855863 | Msa0771690:intron | 30.0% | |
| ACAACCATATCAATTGCATT+TGG | + | chr5_2:44855851-44855870 | None:intergenic | 30.0% | |
| TGATGTATCTGCAGAAAATA+TGG | - | chr5_2:44855983-44856002 | Msa0771690:intron | 30.0% | |
| TACTTATAAGCAATGAAGCA+CGG | - | chr5_2:44856163-44856182 | Msa0771690:intron | 30.0% | |
| TTGAACAAATACTACAAGGA+TGG | - | chr5_2:44856507-44856526 | Msa0771690:CDS | 30.0% | |
| AAAAATAAGAGGACCATTTG+AGG | + | chr5_2:44856760-44856779 | None:intergenic | 30.0% | |
| !!! | AATGGTCCTCTTATTTTTGT+CGG | - | chr5_2:44856762-44856781 | Msa0771690:intron | 30.0% |
| TACTAACCGACAAAAATAAG+AGG | + | chr5_2:44856771-44856790 | None:intergenic | 30.0% | |
| AAGTCAAAGAATCAAACTCA+TGG | + | chr5_2:44856956-44856975 | None:intergenic | 30.0% | |
| CTATGAGACTAATCTTCAAA+TGG | + | chr5_2:44857032-44857051 | None:intergenic | 30.0% | |
| TGAATTTGATTCAAGGTGAA+TGG | - | chr5_2:44857144-44857163 | Msa0771690:CDS | 30.0% | |
| GAATTTGATTCAAGGTGAAT+GGG | - | chr5_2:44857145-44857164 | Msa0771690:CDS | 30.0% | |
| AACATTTGGGTATGCATATT+GGG | - | chr5_2:44857250-44857269 | Msa0771690:intron | 30.0% | |
| ATATATAGGGGATAGGTGAT+GGG | + | chr5_2:44852026-44852045 | Msa0771680:CDS | 35.0% | |
| TATATATAGGGGATAGGTGA+TGG | + | chr5_2:44852027-44852046 | Msa0771680:CDS | 35.0% | |
| TTATGCTTTCTACCACACAT+GGG | - | chr5_2:44852178-44852197 | Msa0771690:three_prime_UTR | 35.0% | |
| AGATTGAAAGCAGTTAACCT+TGG | - | chr5_2:44852219-44852238 | Msa0771690:three_prime_UTR | 35.0% | |
| ! | CAAGAAGTCTTTGTTTGGAA+TGG | + | chr5_2:44852292-44852311 | None:intergenic | 35.0% |
| CATTCCAAACAAAGACTTCT+TGG | - | chr5_2:44852290-44852309 | Msa0771690:exon | 35.0% | |
| CTAACCAAGAAGTCTTTGTT+TGG | + | chr5_2:44852297-44852316 | None:intergenic | 35.0% | |
| AAATATTTGTGTGCAGAGTC+TGG | - | chr5_2:44852493-44852512 | Msa0771690:intron | 35.0% | |
| TAACAAACAATTTGTGGGGT+TGG | - | chr5_2:44852717-44852736 | Msa0771690:intron | 35.0% | |
| ! | TTGAAGCTTTGATTCGAACA+CGG | + | chr5_2:44852825-44852844 | None:intergenic | 35.0% |
| GTTCGAATCAAAGCTTCAAA+TGG | - | chr5_2:44852826-44852845 | Msa0771690:intron | 35.0% | |
| AAAAAGAGGAATTCATGGAG+AGG | - | chr5_2:44853054-44853073 | Msa0771690:CDS | 35.0% | |
| !! | GCCCATAACCATTTGTTATT+TGG | + | chr5_2:44853198-44853217 | None:intergenic | 35.0% |
| GAAAGCTCCACAAATAATGA+AGG | - | chr5_2:44853222-44853241 | Msa0771690:intron | 35.0% | |
| ! | TAGGAGTATAACTTTAGGCT+TGG | - | chr5_2:44853276-44853295 | Msa0771690:intron | 35.0% |
| ATAGATGTGGAGTTATACGT+TGG | + | chr5_2:44853447-44853466 | None:intergenic | 35.0% | |
| !! | TTTTTGGTCAAATAGCCTAG+TGG | - | chr5_2:44853960-44853979 | Msa0771690:intron | 35.0% |
| AATAGCCTAGTGGTTAAAAC+TGG | - | chr5_2:44853970-44853989 | Msa0771690:intron | 35.0% | |
| TACCAACTGAGTTAAGTTCA+TGG | - | chr5_2:44854040-44854059 | Msa0771690:CDS | 35.0% | |
| ACCAACTGAGTTAAGTTCAT+GGG | - | chr5_2:44854041-44854060 | Msa0771690:CDS | 35.0% | |
| ATTGGGAAAAAGGGAATATG+TGG | - | chr5_2:44854099-44854118 | Msa0771690:CDS | 35.0% | |
| ! | TTTTATGTATGTACTCCCTC+CGG | - | chr5_2:44854214-44854233 | Msa0771690:intron | 35.0% |
| TTAATCTTGACCATCGTCAT+TGG | - | chr5_2:44854543-44854562 | Msa0771690:intron | 35.0% | |
| GAAAGGGAAAATATACTTGG+TGG | + | chr5_2:44854761-44854780 | None:intergenic | 35.0% | |
| GGAGAAAGGGAAAATATACT+TGG | + | chr5_2:44854764-44854783 | None:intergenic | 35.0% | |
| !! | AATGTTAACTTGTGCCCTTA+AGG | - | chr5_2:44854886-44854905 | Msa0771690:intron | 35.0% |
| GCTTCTAAACTTGTACCTTA+AGG | + | chr5_2:44854904-44854923 | None:intergenic | 35.0% | |
| AGGTAATCTTATTGGGACAA+TGG | - | chr5_2:44855101-44855120 | Msa0771690:intron | 35.0% | |
| GAGATACTTCTTGGAAACTA+TGG | + | chr5_2:44855310-44855329 | None:intergenic | 35.0% | |
| GTAAATGTAAACGTTTCACG+GGG | - | chr5_2:44855422-44855441 | Msa0771690:intron | 35.0% | |
| GTTCATATTTCCAGGAACAT+TGG | - | chr5_2:44855444-44855463 | Msa0771690:intron | 35.0% | |
| !! | ATGATTTCGAGTTCATAGCT+AGG | - | chr5_2:44855486-44855505 | Msa0771690:intron | 35.0% |
| AAATGCAGTTAGAATTCCAG+TGG | - | chr5_2:44855517-44855536 | Msa0771690:intron | 35.0% | |
| AATGCAGTTAGAATTCCAGT+GGG | - | chr5_2:44855518-44855537 | Msa0771690:intron | 35.0% | |
| ! | CACTAGACAATGCATTTTTG+TGG | - | chr5_2:44855600-44855619 | Msa0771690:intron | 35.0% |
| TGCAATTGATATGGTTGTCA+TGG | - | chr5_2:44855853-44855872 | Msa0771690:intron | 35.0% | |
| GTAATTATAGATGTCGACAC+CGG | + | chr5_2:44856212-44856231 | None:intergenic | 35.0% | |
| AGTTCAACTGCATAAAGACT+TGG | + | chr5_2:44856447-44856466 | None:intergenic | 35.0% | |
| GTGGTGTTCTCAAATAGATT+AGG | - | chr5_2:44856567-44856586 | Msa0771690:intron | 35.0% | |
| TTAGTCTCATAGAGAACCTT+AGG | - | chr5_2:44857040-44857059 | Msa0771690:intron | 35.0% | |
| TAGTCTCATAGAGAACCTTA+GGG | - | chr5_2:44857041-44857060 | Msa0771690:intron | 35.0% | |
| TTTATGGGAGAGCAACATTT+GGG | - | chr5_2:44857237-44857256 | Msa0771690:intron | 35.0% | |
| CAACATTTGGGTATGCATAT+TGG | - | chr5_2:44857249-44857268 | Msa0771690:intron | 35.0% | |
| CTAGAATGGATGATGAAGAA+TGG | - | chr5_2:44857302-44857321 | Msa0771690:intron | 35.0% | |
| TTCTTCTCAGTAAATGGGAT+TGG | + | chr5_2:44857459-44857478 | None:intergenic | 35.0% | |
| AAACTAGTTCAAAACACGAC+CGG | - | chr5_2:44857527-44857546 | Msa0771690:exon | 35.0% | |
| TATATAGGGGATAGGTGATG+GGG | + | chr5_2:44852025-44852044 | Msa0771680:CDS | 40.0% | |
| GTTATGCTTTCTACCACACA+TGG | - | chr5_2:44852177-44852196 | Msa0771690:three_prime_UTR | 40.0% | |
| TTGAAAGCAGTTAACCTTGG+TGG | - | chr5_2:44852222-44852241 | Msa0771690:three_prime_UTR | 40.0% | |
| AAACAATTTGTGGGGTTGGA+TGG | - | chr5_2:44852721-44852740 | Msa0771690:intron | 40.0% | |
| ! | TGAAGCTTTGATTCGAACAC+GGG | + | chr5_2:44852824-44852843 | None:intergenic | 40.0% |
| AGTGACTGCTGATGTATCAT+TGG | - | chr5_2:44853102-44853121 | Msa0771690:CDS | 40.0% | |
| GCTGATGTATCATTGGTCAA+CGG | - | chr5_2:44853109-44853128 | Msa0771690:CDS | 40.0% | |
| ATGTATCATTGGTCAACGGA+TGG | - | chr5_2:44853113-44853132 | Msa0771690:CDS | 40.0% | |
| ACAATTGCTGATAGGATGCA+AGG | - | chr5_2:44853166-44853185 | Msa0771690:CDS | 40.0% | |
| CAACACTCCTTGTATAGATG+TGG | + | chr5_2:44853460-44853479 | None:intergenic | 40.0% | |
| ! | GATGTAATGGGATGAGTTTC+CGG | + | chr5_2:44853782-44853801 | None:intergenic | 40.0% |
| TAGTGGTTAAAACTGGTGTG+CGG | - | chr5_2:44853977-44853996 | Msa0771690:intron | 40.0% | |
| TCCCATGAACTTAACTCAGT+TGG | + | chr5_2:44854045-44854064 | None:intergenic | 40.0% | |
| ! | TGCTTATATTTAGGACCGGA+GGG | + | chr5_2:44854347-44854366 | None:intergenic | 40.0% |
| ! | TTGCTTATATTTAGGACCGG+AGG | + | chr5_2:44854346-44854365 | None:intergenic | 40.0% |
| ! | TTGCTTATATTTAGGACCGG+AGG | - | chr5_2:44854346-44854365 | Msa0771690:intron | 40.0% |
| ! | TGCTTATATTTAGGACCGGA+GGG | - | chr5_2:44854347-44854366 | Msa0771690:intron | 40.0% |
| CTTCACGTTACCAATGACAA+TGG | + | chr5_2:44854663-44854682 | None:intergenic | 40.0% | |
| ATATTAGTTGGGTAGGGCAA+TGG | - | chr5_2:44855071-44855090 | Msa0771690:intron | 40.0% | |
| TAAAACTGCTCCAATGTTCC+TGG | + | chr5_2:44855457-44855476 | None:intergenic | 40.0% | |
| ! | TTCGAGTTCATAGCTAGGAA+TGG | - | chr5_2:44855491-44855510 | Msa0771690:intron | 40.0% |
| TGCATTGTCTAGTGCTTGTA+AGG | + | chr5_2:44855594-44855613 | None:intergenic | 40.0% | |
| AAGAGACGGTTCACAAGAAT+GGG | - | chr5_2:44856072-44856091 | Msa0771690:intron | 40.0% | |
| !! | TCATTGACTTCCTAACTGCA+AGG | - | chr5_2:44856131-44856150 | Msa0771690:intron | 40.0% |
| AATGTATGCACCTTGCAGTT+AGG | + | chr5_2:44856144-44856163 | None:intergenic | 40.0% | |
| ! | CACGGATACTTTTCAGACTA+GGG | - | chr5_2:44856181-44856200 | Msa0771690:intron | 40.0% |
| ! | TTTTCAGACTAGGGATGTTC+CGG | - | chr5_2:44856190-44856209 | Msa0771690:intron | 40.0% |
| ! | AAACTTTCTAGTGTTGCACC+TGG | + | chr5_2:44856489-44856508 | None:intergenic | 40.0% |
| GCACTCTTCTACTGTATTTG+TGG | - | chr5_2:44856548-44856567 | Msa0771690:intron | 40.0% | |
| GAATTCTTCCCACTAGCTAA+TGG | - | chr5_2:44856606-44856625 | Msa0771690:intron | 40.0% | |
| CATCAATCACTGATCCCATA+AGG | + | chr5_2:44856632-44856651 | None:intergenic | 40.0% | |
| TTTATCCAACATGCACCCTA+AGG | + | chr5_2:44857059-44857078 | None:intergenic | 40.0% | |
| GTTTATGGGAGAGCAACATT+TGG | - | chr5_2:44857236-44857255 | Msa0771690:intron | 40.0% | |
| TCAAGAACGTGAACAAACAC+TGG | - | chr5_2:44857276-44857295 | Msa0771690:intron | 40.0% | |
| ACAAACACTGGAGTCTAGAA+TGG | - | chr5_2:44857288-44857307 | Msa0771690:intron | 40.0% | |
| ! | AAGCAGTTAACCTTGGTGGT+TGG | - | chr5_2:44852226-44852245 | Msa0771690:three_prime_UTR | 45.0% |
| ! | AGTTAACCTTGGTGGTTGGT+TGG | - | chr5_2:44852230-44852249 | Msa0771690:three_prime_UTR | 45.0% |
| ! | GTTGGTTGGTTACTGAAGGT+TGG | - | chr5_2:44852244-44852263 | Msa0771690:three_prime_UTR | 45.0% |
| GGAATGGCATCAAAGAGAGA+AGG | + | chr5_2:44852276-44852295 | None:intergenic | 45.0% | |
| TATTTGTGTGCAGAGTCTGG+AGG | - | chr5_2:44852496-44852515 | Msa0771690:intron | 45.0% | |
| AATTCATGGAGAGGATCTGC+AGG | - | chr5_2:44853063-44853082 | Msa0771690:CDS | 45.0% | |
| TGTCAACTGAGCTATGCTCA+CGG | + | chr5_2:44853486-44853505 | None:intergenic | 45.0% | |
| TGAGCATAGCTCAGTTGACA+GGG | - | chr5_2:44853486-44853505 | Msa0771690:intron | 45.0% | |
| AGGTTAGAGCTCAAGAGAAG+AGG | - | chr5_2:44853572-44853591 | Msa0771690:CDS | 45.0% | |
| !! | GCACACCAGTTTTAACCACT+AGG | + | chr5_2:44853978-44853997 | None:intergenic | 45.0% |
| AGTGGTTAAAACTGGTGTGC+GGG | - | chr5_2:44853978-44853997 | Msa0771690:intron | 45.0% | |
| CTTCACGTTACCAATGACGA+TGG | + | chr5_2:44854556-44854575 | None:intergenic | 45.0% | |
| GGTAGGGCAATGGCATATTA+AGG | - | chr5_2:44855081-44855100 | Msa0771690:intron | 45.0% | |
| CCAGTAAGTCAATGGATGAC+TGG | + | chr5_2:44855160-44855179 | None:intergenic | 45.0% | |
| !! | CCAGTCATCCATTGACTTAC+TGG | - | chr5_2:44855157-44855176 | Msa0771690:intron | 45.0% |
| TTCACGGGGTTCATATTTCC+AGG | - | chr5_2:44855436-44855455 | Msa0771690:intron | 45.0% | |
| CAGTTAGAATTCCAGTGGGT+TGG | - | chr5_2:44855522-44855541 | Msa0771690:intron | 45.0% | |
| !! | TTAGAATTCCAGTGGGTTGG+TGG | - | chr5_2:44855525-44855544 | Msa0771690:intron | 45.0% |
| ATTGATCTTCATGCAGCACC+TGG | - | chr5_2:44856019-44856038 | Msa0771690:intron | 45.0% | |
| !! | TCATAGCCATTTTGAGAGCC+AGG | + | chr5_2:44856040-44856059 | None:intergenic | 45.0% |
| GAGCATAGCTCTTCAAGAGA+CGG | - | chr5_2:44856058-44856077 | Msa0771690:intron | 45.0% | |
| CAAGAGACGGTTCACAAGAA+TGG | - | chr5_2:44856071-44856090 | Msa0771690:intron | 45.0% | |
| AGAGACGGTTCACAAGAATG+GGG | - | chr5_2:44856073-44856092 | Msa0771690:intron | 45.0% | |
| ! | GCACGGATACTTTTCAGACT+AGG | - | chr5_2:44856180-44856199 | Msa0771690:intron | 45.0% |
| CTAAATGAGCCTCTATCACC+AGG | - | chr5_2:44856468-44856487 | Msa0771690:CDS | 45.0% | |
| GAAGAATTCTCTAGGCATGG+AGG | + | chr5_2:44856595-44856614 | None:intergenic | 45.0% | |
| TGGGAAGAATTCTCTAGGCA+TGG | + | chr5_2:44856598-44856617 | None:intergenic | 45.0% | |
| GCTAGTGGGAAGAATTCTCT+AGG | + | chr5_2:44856603-44856622 | None:intergenic | 45.0% | |
| CCATAAGGCCATTAGCTAGT+GGG | + | chr5_2:44856617-44856636 | None:intergenic | 45.0% | |
| !! | CCACTAGCTAATGGCCTTAT+GGG | - | chr5_2:44856615-44856634 | Msa0771690:intron | 45.0% |
| GTCCACTACTACAGCATCTT+TGG | - | chr5_2:44856651-44856670 | Msa0771690:intron | 45.0% | |
| CTCCAAAGATGCTGTAGTAG+TGG | + | chr5_2:44856656-44856675 | None:intergenic | 45.0% | |
| TGCTGAGTGGCAAGTTAAAG+AGG | - | chr5_2:44857169-44857188 | Msa0771690:CDS | 45.0% | |
| ! | TCTGGTCTCTTTTTCTCTCG+AGG | + | chr5_2:44857614-44857633 | None:intergenic | 45.0% |
| CGAGAGAAAAAGAGACCAGA+AGG | - | chr5_2:44857614-44857633 | Msa0771690:five_prime_UTR | 45.0% | |
| CTACAAGATGGTAGTCCTTC+TGG | + | chr5_2:44857632-44857651 | None:intergenic | 45.0% | |
| !!! | TTTTTCTATATATTTTTAAT+AGG | - | chr5_2:44852432-44852451 | Msa0771690:CDS | 5.0% |
| !!! | AAAATATACTTTTTTTTTAA+GGG | + | chr5_2:44854785-44854804 | None:intergenic | 5.0% |
| !! | TTCATATAAATATTTATATT+TGG | + | chr5_2:44856853-44856872 | None:intergenic | 5.0% |
| !! | CTGATTTGGTCTCCCATGTG+TGG | + | chr5_2:44852193-44852212 | None:intergenic | 50.0% |
| CAGTAACCAACCAACCACCA+AGG | + | chr5_2:44852239-44852258 | None:intergenic | 50.0% | |
| ! | GGTGGTTGGTTGGTTACTGA+AGG | - | chr5_2:44852240-44852259 | Msa0771690:three_prime_UTR | 50.0% |
| TGAGCGGTTTGCAACAAGGA+TGG | + | chr5_2:44852527-44852546 | None:intergenic | 50.0% | |
| CACTTGAGCGGTTTGCAACA+AGG | + | chr5_2:44852531-44852550 | None:intergenic | 50.0% | |
| ! | AGCTTTGATTCGAACACGGG+TGG | + | chr5_2:44852821-44852840 | None:intergenic | 50.0% |
| AGAGGATCTGCAGGCAAAGA+TGG | - | chr5_2:44853072-44853091 | Msa0771690:CDS | 50.0% | |
| TCTGCAGGCAAAGATGGAAG+AGG | - | chr5_2:44853078-44853097 | Msa0771690:CDS | 50.0% | |
| GTGAGCATAGCTCAGTTGAC+AGG | - | chr5_2:44853485-44853504 | Msa0771690:intron | 50.0% | |
| GTCTCCTCATTCACACGTGA+TGG | - | chr5_2:44854830-44854849 | Msa0771690:intron | 50.0% | |
| TCCTCATTCACACGTGATGG+TGG | - | chr5_2:44854833-44854852 | Msa0771690:intron | 50.0% | |
| ACCACCATCACGTGTGAATG+AGG | + | chr5_2:44854837-44854856 | None:intergenic | 50.0% | |
| CAAGTGATCCAACTCCACCA+CGG | - | chr5_2:44855552-44855571 | Msa0771690:intron | 50.0% | |
| TGTAAGGAACCTCCCACGTA+GGG | + | chr5_2:44855578-44855597 | None:intergenic | 50.0% | |
| TTGTAAGGAACCTCCCACGT+AGG | + | chr5_2:44855579-44855598 | None:intergenic | 50.0% | |
| AGTGTTGCACCTGGTGATAG+AGG | + | chr5_2:44856480-44856499 | None:intergenic | 50.0% | |
| ! | CCCACTAGCTAATGGCCTTA+TGG | - | chr5_2:44856614-44856633 | Msa0771690:intron | 50.0% |
| CCCATAAGGCCATTAGCTAG+TGG | + | chr5_2:44856618-44856637 | None:intergenic | 50.0% | |
| GAGAACCTTAGGGTGCATGT+TGG | - | chr5_2:44857051-44857070 | Msa0771690:intron | 50.0% | |
| !! | AAGGTGAATGGGTTGCTGAG+TGG | - | chr5_2:44857156-44857175 | Msa0771690:CDS | 50.0% |
| TTGTGTGCAGAGTCTGGAGG+AGG | - | chr5_2:44852499-44852518 | Msa0771690:intron | 55.0% | |
| GCAAACCGCTCAAGTGCTTC+TGG | - | chr5_2:44852535-44852554 | Msa0771690:intron | 55.0% | |
| ACCGCTCAAGTGCTTCTGGT+TGG | - | chr5_2:44852539-44852558 | Msa0771690:intron | 55.0% | |
| !! | CCCAACCAGAAGCACTTGAG+CGG | + | chr5_2:44852543-44852562 | None:intergenic | 55.0% |
| ! | CCGCTCAAGTGCTTCTGGTT+GGG | - | chr5_2:44852540-44852559 | Msa0771690:intron | 55.0% |
| ! | CTTGCTATCCACCAACCCAC+TGG | + | chr5_2:44855536-44855555 | None:intergenic | 55.0% |
| ! | GCAGCACCTGGCTCTCAAAA+TGG | - | chr5_2:44856031-44856050 | Msa0771690:intron | 55.0% |
| CTGACATCGACACGTCGACA+CGG | + | chr5_2:44856266-44856285 | None:intergenic | 55.0% | |
| GTCGATGTCAGTGTCGTGTC+TGG | - | chr5_2:44856275-44856294 | Msa0771690:intron | 55.0% | |
| ! | ACGTAGGGCCGTGGTGGAGT+TGG | + | chr5_2:44855563-44855582 | None:intergenic | 65.0% |
| AACTCCACCACGGCCCTACG+TGG | - | chr5_2:44855562-44855581 | Msa0771690:intron | 65.0% | |
| ACTCCACCACGGCCCTACGT+GGG | - | chr5_2:44855563-44855582 | Msa0771690:intron | 65.0% | |
| GAACCTCCCACGTAGGGCCG+TGG | + | chr5_2:44855572-44855591 | None:intergenic | 70.0% | |
| CCTCCCACGTAGGGCCGTGG+TGG | + | chr5_2:44855569-44855588 | None:intergenic | 75.0% | |
| CCACCACGGCCCTACGTGGG+AGG | - | chr5_2:44855566-44855585 | Msa0771690:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 44851993 | 44857655 | 44851993 | ID=Msa0771690;Name=Msa0771690 |
| chr5_2 | mRNA | 44851993 | 44857655 | 44851993 | ID=Msa0771690-mRNA-1;Parent=Msa0771690;Name=Msa0771690-mRNA-1;_AED=0.13;_eAED=0.13;_QI=124|1|1|1|1|1|8|315|506 |
| chr5_2 | exon | 44851993 | 44852489 | 44851993 | ID=Msa0771690-mRNA-1:exon:13629;Parent=Msa0771690-mRNA-1 |
| chr5_2 | exon | 44852865 | 44853217 | 44852865 | ID=Msa0771690-mRNA-1:exon:13628;Parent=Msa0771690-mRNA-1 |
| chr5_2 | exon | 44853496 | 44853651 | 44853496 | ID=Msa0771690-mRNA-1:exon:13627;Parent=Msa0771690-mRNA-1 |
| chr5_2 | exon | 44854021 | 44854190 | 44854021 | ID=Msa0771690-mRNA-1:exon:13626;Parent=Msa0771690-mRNA-1 |
| chr5_2 | exon | 44856405 | 44856563 | 44856405 | ID=Msa0771690-mRNA-1:exon:13625;Parent=Msa0771690-mRNA-1 |
| chr5_2 | exon | 44856787 | 44856972 | 44856787 | ID=Msa0771690-mRNA-1:exon:13624;Parent=Msa0771690-mRNA-1 |
| chr5_2 | exon | 44857075 | 44857194 | 44857075 | ID=Msa0771690-mRNA-1:exon:13623;Parent=Msa0771690-mRNA-1 |
| chr5_2 | exon | 44857337 | 44857655 | 44857337 | ID=Msa0771690-mRNA-1:exon:13622;Parent=Msa0771690-mRNA-1 |
| chr5_2 | five_prime_UTR | 44857532 | 44857655 | 44857532 | ID=Msa0771690-mRNA-1:five_prime_utr;Parent=Msa0771690-mRNA-1 |
| chr5_2 | CDS | 44857337 | 44857531 | 44857337 | ID=Msa0771690-mRNA-1:cds;Parent=Msa0771690-mRNA-1 |
| chr5_2 | CDS | 44857075 | 44857194 | 44857075 | ID=Msa0771690-mRNA-1:cds;Parent=Msa0771690-mRNA-1 |
| chr5_2 | CDS | 44856787 | 44856972 | 44856787 | ID=Msa0771690-mRNA-1:cds;Parent=Msa0771690-mRNA-1 |
| chr5_2 | CDS | 44856405 | 44856563 | 44856405 | ID=Msa0771690-mRNA-1:cds;Parent=Msa0771690-mRNA-1 |
| chr5_2 | CDS | 44854021 | 44854190 | 44854021 | ID=Msa0771690-mRNA-1:cds;Parent=Msa0771690-mRNA-1 |
| chr5_2 | CDS | 44853496 | 44853651 | 44853496 | ID=Msa0771690-mRNA-1:cds;Parent=Msa0771690-mRNA-1 |
| chr5_2 | CDS | 44852865 | 44853217 | 44852865 | ID=Msa0771690-mRNA-1:cds;Parent=Msa0771690-mRNA-1 |
| chr5_2 | CDS | 44852308 | 44852489 | 44852308 | ID=Msa0771690-mRNA-1:cds;Parent=Msa0771690-mRNA-1 |
| chr5_2 | three_prime_UTR | 44851993 | 44852307 | 44851993 | ID=Msa0771690-mRNA-1:three_prime_utr;Parent=Msa0771690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
