Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850240 | XP_003615000.1 | 95.446 | 505 | 22 | 1 | 2 | 505 | 1 | 505 | 0.0 | 997 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850240 | sp|Q7Z9L3|EXGA_ASPOR | 37.313 | 268 | 149 | 11 | 188 | 450 | 48 | 301 | 5.57e-40 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850240 | G7KA56 | 95.446 | 505 | 22 | 1 | 2 | 505 | 1 | 505 | 0.0 | 997 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0731470 | Msa0850240 | 0.817317 | 3.511058e-52 | -8.615850e-47 |
| Msa0771690 | Msa0850240 | 0.831202 | 1.908466e-55 | -8.615850e-47 |
| Msa0809740 | Msa0850240 | 0.883115 | 5.896515e-71 | -8.615850e-47 |
| Msa0850240 | Msa1397260 | 0.824022 | 1.011078e-53 | -8.615850e-47 |
| Msa0850240 | Msa1401140 | 0.826975 | 2.019134e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850240 | MtrunA17_Chr5g0425401 | 95.446 | 505 | 22 | 1 | 2 | 505 | 1 | 505 | 0.0 | 997 |
| Msa0850240 | MtrunA17_Chr5g0425361 | 80.868 | 507 | 95 | 2 | 1 | 505 | 1 | 507 | 0.0 | 871 |
| Msa0850240 | MtrunA17_Chr8g0382641 | 53.740 | 508 | 219 | 8 | 9 | 505 | 4 | 506 | 0.0 | 555 |
| Msa0850240 | MtrunA17_Chr3g0079451 | 55.696 | 474 | 199 | 6 | 36 | 505 | 7 | 473 | 0.0 | 555 |
| Msa0850240 | MtrunA17_Chr3g0079461 | 56.025 | 473 | 199 | 5 | 36 | 505 | 31 | 497 | 0.0 | 553 |
| Msa0850240 | MtrunA17_Chr3g0079431 | 53.783 | 489 | 214 | 8 | 18 | 505 | 12 | 489 | 0.0 | 539 |
| Msa0850240 | MtrunA17_Chr3g0079441 | 52.342 | 491 | 220 | 8 | 18 | 505 | 12 | 491 | 0.0 | 530 |
| Msa0850240 | MtrunA17_Chr3g0123661 | 47.679 | 474 | 244 | 2 | 34 | 505 | 34 | 505 | 2.21e-166 | 481 |
| Msa0850240 | MtrunA17_Chr5g0425351 | 59.649 | 228 | 50 | 3 | 220 | 447 | 19 | 204 | 8.53e-85 | 260 |
| Msa0850240 | MtrunA17_Chr5g0425301 | 75.000 | 76 | 19 | 0 | 377 | 452 | 2 | 77 | 4.99e-34 | 123 |
| Msa0850240 | MtrunA17_Chr5g0425291 | 69.841 | 63 | 18 | 1 | 218 | 280 | 19 | 80 | 4.12e-24 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 126 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAGAAACTTTCAGATTT+AGG | 0.092819 | 5_4:-39054226 | Msa0850240:CDS |
| GCCCATAACCATTTGTTATT+TGG | 0.116919 | 5_4:+39053720 | None:intergenic |
| ATCATATATAATCATAATTT+TGG | 0.132461 | 5_4:+39049926 | None:intergenic |
| TTTACATTCTTCTCAGTAAA+TGG | 0.143116 | 5_4:+39049810 | None:intergenic |
| TCCTCTTGCTAATGGCCTTA+TGG | 0.161619 | 5_4:-39050658 | Msa0850240:CDS |
| CTAACCAAGAAGTCTTTATT+TGG | 0.163182 | 5_4:+39054620 | None:intergenic |
| CAACCTTTGGGTATGCTTAT+TGG | 0.171524 | 5_4:-39050023 | Msa0850240:CDS |
| AAGGCTCAATTAGATGTTTA+TGG | 0.183154 | 5_4:-39050051 | Msa0850240:CDS |
| CAAAGAAACTTTCAGATTTA+GGG | 0.194710 | 5_4:-39054225 | Msa0850240:CDS |
| CTACAAGATGGTAGTCTTTC+TGG | 0.195015 | 5_4:+39049643 | Msa0850230:CDS |
| CCTCTTGCTAATGGCCTTAT+GGG | 0.207344 | 5_4:-39050657 | Msa0850240:CDS |
| CATTCCAAATAAAGACTTCT+TGG | 0.211873 | 5_4:-39054624 | Msa0850240:intron |
| TGTCACTTTCTTTAACAATA+TGG | 0.234715 | 5_4:+39054123 | None:intergenic |
| TAAGATTAGTTGTATATATA+GGG | 0.239445 | 5_4:+39054870 | None:intergenic |
| AACCTTTGGGTATGCTTATT+GGG | 0.259102 | 5_4:-39050022 | Msa0850240:CDS |
| GTCCACTACTACAGCATCTT+TGG | 0.300446 | 5_4:-39050621 | Msa0850240:CDS |
| TTCAATCTAAACTTCTGATT+TGG | 0.308423 | 5_4:+39054710 | None:intergenic |
| CTAAGATTAGTTGTATATAT+AGG | 0.312156 | 5_4:+39054869 | None:intergenic |
| TTCCAAATAACAAATGGTTA+TGG | 0.317163 | 5_4:-39053722 | Msa0850240:CDS |
| TGATGTATCTGCAGAAAATA+TGG | 0.318498 | 5_4:-39051285 | Msa0850240:intron |
| AATGATACCTTCATTATTTG+TGG | 0.328223 | 5_4:+39053686 | None:intergenic |
| GCAAACCGCTCAAGTGCTTC+TGG | 0.344807 | 5_4:-39054380 | Msa0850240:CDS |
| GAATTCTTTCCTCTTGCTAA+TGG | 0.346595 | 5_4:-39050666 | Msa0850240:CDS |
| GCAGCACCTGGCTCTCAAAA+TGG | 0.347913 | 5_4:-39051237 | Msa0850240:CDS |
| TCCAAATAACAAATGGTTAT+GGG | 0.378270 | 5_4:-39053721 | Msa0850240:CDS |
| ACTGTATCAACCTCAAAATA+TGG | 0.385596 | 5_4:-39054784 | Msa0850240:CDS |
| GTGGTGTTCTCAAATAGATT+AGG | 0.388703 | 5_4:-39050705 | Msa0850240:CDS |
| AAATATTTGTGTGCAGAGTC+TGG | 0.390828 | 5_4:-39054422 | Msa0850240:CDS |
| GTTGGTTGGTTACTGAAGGT+TGG | 0.402124 | 5_4:-39054670 | Msa0850240:CDS |
| AGGCTCAATTAGATGTTTAT+GGG | 0.404864 | 5_4:-39050050 | Msa0850240:CDS |
| TAATAAACAATTTGTGGGAT+TGG | 0.405177 | 5_4:-39054198 | Msa0850240:CDS |
| TGCATTGTCTAGTGCTTGTA+AGG | 0.406879 | 5_4:+39051649 | None:intergenic |
| GCACTCTTCTACTGTATTTG+TGG | 0.407650 | 5_4:-39050724 | Msa0850240:CDS |
| TTACATTCTTCTCAGTAAAT+GGG | 0.410046 | 5_4:+39049811 | None:intergenic |
| AAGAGACGGTTCACAAGAAT+GGG | 0.412119 | 5_4:-39051196 | Msa0850240:CDS |
| TTGTAATGACAATTGCTGAT+AGG | 0.413076 | 5_4:-39053757 | Msa0850240:CDS |
| CCGCTCAAGTGCTTCTGGTT+GGG | 0.413588 | 5_4:-39054375 | Msa0850240:CDS |
| TGAATTTGATTCAAGGTGAA+TGG | 0.419560 | 5_4:-39050128 | Msa0850240:intron |
| CAAGAGACGGTTCACAAGAA+TGG | 0.421390 | 5_4:-39051197 | Msa0850240:CDS |
| CAAGAAGTCTTTATTTGGAA+TGG | 0.424132 | 5_4:+39054625 | None:intergenic |
| AGAGTGAAGTACTTAAATAA+AGG | 0.430103 | 5_4:+39049883 | None:intergenic |
| TATATATAGGGGATAGGTGA+TGG | 0.430987 | 5_4:+39054882 | None:intergenic |
| ATGGAATGTTTCAGAATCAA+TGG | 0.438369 | 5_4:+39054142 | None:intergenic |
| GTTTATGGGAGAGCAACCTT+TGG | 0.441258 | 5_4:-39050036 | Msa0850240:CDS |
| TTCTTCTCAGTAAATGGGAT+TGG | 0.442442 | 5_4:+39049816 | None:intergenic |
| GTGTTTAATAAACAATTTGT+GGG | 0.451272 | 5_4:-39054203 | Msa0850240:CDS |
| AAACAATTTGTGGGATTGGA+TGG | 0.453779 | 5_4:-39054194 | Msa0850240:CDS |
| GTTCGAATCAAAGCTTCAAA+TGG | 0.457248 | 5_4:-39054089 | Msa0850240:CDS |
| GGTGTTTAATAAACAATTTG+TGG | 0.463822 | 5_4:-39054204 | Msa0850240:CDS |
| ATATATAGGGGATAGGTGAT+GGG | 0.469078 | 5_4:+39054883 | None:intergenic |
| TTTATGGGAGAGCAACCTTT+GGG | 0.475753 | 5_4:-39050035 | Msa0850240:CDS |
| AATGTATGCACCTTGCAGTT+AGG | 0.476338 | 5_4:+39051127 | None:intergenic |
| TTAGAATTCCAGTGGGTTGG+TGG | 0.482622 | 5_4:-39051715 | Msa0850240:CDS |
| ATGATTTCAAGTTCATAGCT+AGG | 0.494652 | 5_4:-39051754 | Msa0850240:CDS |
| GGTGAATTCCAAATAACAAA+TGG | 0.496193 | 5_4:-39053728 | Msa0850240:CDS |
| TTCAAGTTCATAGCTAGGAA+TGG | 0.498346 | 5_4:-39051749 | Msa0850240:CDS |
| GAATTTGATTCAAGGTGAAT+GGG | 0.499572 | 5_4:-39050127 | Msa0850240:intron |
| ATTGATCTTCATGCAGCACC+TGG | 0.500988 | 5_4:-39051249 | Msa0850240:CDS |
| TTGAAAGCAGTTAACCTTGG+TGG | 0.501297 | 5_4:-39054692 | Msa0850240:CDS |
| ACCGCTCAAGTGCTTCTGGT+TGG | 0.501991 | 5_4:-39054376 | Msa0850240:CDS |
| GTTCATATTTCCAGGAACAT+TGG | 0.506200 | 5_4:-39051796 | Msa0850240:intron |
| ACAAACATTGGAGTCTAGAA+TGG | 0.506920 | 5_4:-39049984 | Msa0850240:CDS |
| GGTGGTTGGTTGGTTACTGA+AGG | 0.508219 | 5_4:-39054674 | Msa0850240:CDS |
| CATCAATCACTGATCCCATA+AGG | 0.530630 | 5_4:+39050643 | None:intergenic |
| TGACTACAAAAGATTTGGTA+AGG | 0.530769 | 5_4:-39050070 | Msa0850240:CDS |
| TGAAGCTTTGATTCGAACAC+GGG | 0.534321 | 5_4:+39054094 | None:intergenic |
| GCAAGAGGAAAGAATTCTCT+AGG | 0.534485 | 5_4:+39050672 | None:intergenic |
| ACGTAGGGCCATGGTGGAGT+TGG | 0.534619 | 5_4:+39051680 | None:intergenic |
| CAGTTAGAATTCCAGTGGGT+TGG | 0.535426 | 5_4:-39051718 | Msa0850240:CDS |
| TTCAAATGGATACTTCATAC+AGG | 0.536866 | 5_4:-39054075 | Msa0850240:intron |
| GAAAGCTCCACAAATAATGA+AGG | 0.536911 | 5_4:-39053693 | Msa0850240:intron |
| TGCTGAGTGGCAAGTTAAAG+AGG | 0.538125 | 5_4:-39050103 | Msa0850240:CDS |
| CTAGAATGGATGATGAAGAA+TGG | 0.541024 | 5_4:-39049970 | Msa0850240:CDS |
| CTCCAAAGATGCTGTAGTAG+TGG | 0.542320 | 5_4:+39050619 | None:intergenic |
| CACTTGAGCGGTTTGCAACA+AGG | 0.542938 | 5_4:+39054387 | None:intergenic |
| AGTTAACCTTGGTGGTTGGT+TGG | 0.544377 | 5_4:-39054684 | Msa0850240:CDS |
| AGTGACTGCTGATGTATCAT+TGG | 0.547052 | 5_4:-39053813 | Msa0850240:CDS |
| AAGATTAGTTGTATATATAG+GGG | 0.550005 | 5_4:+39054871 | None:intergenic |
| AGAGGATCTGCAGGCAAAGA+CGG | 0.554880 | 5_4:-39053843 | Msa0850240:intron |
| TTGAACAAATACTACATGGA+TGG | 0.557226 | 5_4:-39050765 | Msa0850240:CDS |
| AGGAAAGAATTCTCTAGGCA+TGG | 0.561773 | 5_4:+39050677 | None:intergenic |
| AGTTCAACTGCATAAAGACT+TGG | 0.561869 | 5_4:+39050828 | None:intergenic |
| GTAGCTATCCACCAACCCAC+TGG | 0.563066 | 5_4:+39051707 | None:intergenic |
| AGTGTTGCACCAGGTGATAG+AGG | 0.563249 | 5_4:+39050795 | None:intergenic |
| GGAATGGCATCAAAGAGTGA+AGG | 0.566127 | 5_4:+39054641 | None:intergenic |
| GAACCTCCCACGTAGGGCCA+TGG | 0.568301 | 5_4:+39051671 | None:intergenic |
| TCTGCAGGCAAAGACGGAAG+AGG | 0.569718 | 5_4:-39053837 | Msa0850240:intron |
| TCAAGAACGTGAACAAACAT+TGG | 0.571265 | 5_4:-39049996 | Msa0850240:CDS |
| TGAGCGGTTTGCAACAAGGA+TGG | 0.571791 | 5_4:+39054391 | None:intergenic |
| CTAAATGAGCCTCTATCACC+TGG | 0.576368 | 5_4:-39050804 | Msa0850240:CDS |
| GTGAAATTGGCACTACAAGA+TGG | 0.577308 | 5_4:+39049631 | Msa0850230:CDS |
| AGATTGAAAGCAGTTAACCT+TGG | 0.578195 | 5_4:-39054695 | Msa0850240:CDS |
| TAGTTGTATATATAGGGGAT+AGG | 0.582238 | 5_4:+39054876 | None:intergenic |
| CTGATTTGGTCTCCCATGTG+TGG | 0.583392 | 5_4:+39054724 | None:intergenic |
| TGTAAGGAACCTCCCACGTA+GGG | 0.583435 | 5_4:+39051665 | None:intergenic |
| ATGTATCATTGGTCAACGGA+TGG | 0.585711 | 5_4:-39053802 | Msa0850240:CDS |
| CCTCCCACGTAGGGCCATGG+TGG | 0.588737 | 5_4:+39051674 | None:intergenic |
| CCCAACCAGAAGCACTTGAG+CGG | 0.589670 | 5_4:+39054375 | None:intergenic |
| GTTATGCTTTCTACCACACA+TGG | 0.592026 | 5_4:-39054737 | Msa0850240:CDS |
| TTGTGTGCAGAGTCTGGAGG+AGG | 0.597579 | 5_4:-39054416 | Msa0850240:CDS |
| AGCTTTGATTCGAACACGGG+TGG | 0.598897 | 5_4:+39054097 | None:intergenic |
| TTGAAGCTTTGATTCGAACA+CGG | 0.599020 | 5_4:+39054093 | None:intergenic |
| AACTCCACCATGGCCCTACG+TGG | 0.599934 | 5_4:-39051678 | Msa0850240:CDS |
| CCACCATGGCCCTACGTGGG+AGG | 0.603970 | 5_4:-39051674 | Msa0850240:CDS |
| TATATAGGGGATAGGTGATG+GGG | 0.604194 | 5_4:+39054884 | None:intergenic |
| AAACTTTCTAGTGTTGCACC+AGG | 0.604496 | 5_4:+39050786 | None:intergenic |
| AAATGCAGTTAGAATTCCAG+TGG | 0.605969 | 5_4:-39051723 | Msa0850240:CDS |
| AAACTAGTTCAAAACACGAT+CGG | 0.610752 | 5_4:-39049745 | Msa0850240:three_prime_UTR |
| GAGCATAGCTCTTCAAGAGA+CGG | 0.613874 | 5_4:-39051210 | Msa0850240:CDS |
| AAGTTTGAACAAATACTACA+TGG | 0.622885 | 5_4:-39050769 | Msa0850240:CDS |
| TTGTAAGGAACCTCCCACGT+AGG | 0.623751 | 5_4:+39051664 | None:intergenic |
| CCCATAAGGCCATTAGCAAG+AGG | 0.631822 | 5_4:+39050657 | None:intergenic |
| AAGCAGTTAACCTTGGTGGT+TGG | 0.646493 | 5_4:-39054688 | Msa0850240:CDS |
| ACAATTGCTGATAGGATGCA+AGG | 0.648620 | 5_4:-39053749 | Msa0850240:CDS |
| AATGCAGTTAGAATTCCAGT+GGG | 0.652546 | 5_4:-39051722 | Msa0850240:CDS |
| TCATTGACTTCCTAACTGCA+AGG | 0.656279 | 5_4:-39051137 | Msa0850240:intron |
| ACTCCACCATGGCCCTACGT+GGG | 0.663058 | 5_4:-39051677 | Msa0850240:CDS |
| TTATGCTTTCTACCACACAT+GGG | 0.677451 | 5_4:-39054736 | Msa0850240:CDS |
| AAAGAATTCTCTAGGCATGG+AGG | 0.684365 | 5_4:+39050680 | None:intergenic |
| TGCCCAATAAGCATACCCAA+AGG | 0.686145 | 5_4:+39050020 | None:intergenic |
| GCTGATGTATCATTGGTCAA+CGG | 0.707292 | 5_4:-39053806 | Msa0850240:CDS |
| CTACTGATCCAACTCCACCA+TGG | 0.707550 | 5_4:-39051688 | Msa0850240:CDS |
| CAGTAACCAACCAACCACCA+AGG | 0.710651 | 5_4:+39054678 | None:intergenic |
| AGAGACGGTTCACAAGAATG+GGG | 0.726094 | 5_4:-39051195 | Msa0850240:CDS |
| AAGGTGAATGGGTTGCTGAG+TGG | 0.733038 | 5_4:-39050116 | Msa0850240:CDS |
| TATTTGTGTGCAGAGTCTGG+AGG | 0.745186 | 5_4:-39054419 | Msa0850240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTCTATATATTTTTTAT+AGG | - | chr5_4:39050081-39050100 | Msa0850240:CDS | 10.0% |
| !!! | TTTCTTTATAATTTTTTTAG+AGG | - | chr5_4:39050658-39050677 | Msa0850240:CDS | 10.0% |
| !! | TTAGAATGATATAAAATTTA+GGG | + | chr5_4:39051411-39051430 | None:intergenic | 10.0% |
| !! | TTAACAAAATGAAATATAAT+TGG | - | chr5_4:39051736-39051755 | Msa0850240:CDS | 10.0% |
| !! | TAACAAAATGAAATATAATT+GGG | - | chr5_4:39051737-39051756 | Msa0850240:CDS | 10.0% |
| !!! | AACAATGATTTTTTTTTTTT+GGG | - | chr5_4:39051794-39051813 | Msa0850240:intron | 10.0% |
| !! | TATGATAAAAAAAAATTGAA+TGG | + | chr5_4:39051930-39051949 | None:intergenic | 10.0% |
| !!! | TACTTTTTTTTTTTTTTGAA+GGG | + | chr5_4:39052296-39052315 | None:intergenic | 10.0% |
| !!! | ATACTTTTTTTTTTTTTTGA+AGG | + | chr5_4:39052297-39052316 | None:intergenic | 10.0% |
| !! | TTATTCAATAATTATTATTG+AGG | + | chr5_4:39052553-39052572 | None:intergenic | 10.0% |
| !! | AATAATTATTACTTATATCA+TGG | + | chr5_4:39053649-39053668 | None:intergenic | 10.0% |
| !! | TATTTAATATACAAATAACA+TGG | + | chr5_4:39053672-39053691 | None:intergenic | 10.0% |
| !! | AAAACAATTTATATTAAGAA+TGG | + | chr5_4:39054098-39054117 | None:intergenic | 10.0% |
| !!! | TATTGTTTTTCTTTTATATT+GGG | + | chr5_4:39054294-39054313 | None:intergenic | 10.0% |
| !!! | ATATTGTTTTTCTTTTATAT+TGG | + | chr5_4:39054295-39054314 | None:intergenic | 10.0% |
| !!! | ATCATATATAATCATAATTT+TGG | + | chr5_4:39054641-39054660 | None:intergenic | 10.0% |
| !!! | TAAGATTAGTTGTATATATA+GGG | + | chr5_4:39049697-39049716 | None:intergenic | 15.0% |
| !!! | TCTATATATTTTTTATAGGA+TGG | - | chr5_4:39050085-39050104 | Msa0850240:CDS | 15.0% |
| !! | TAAAAATATAGTATATACTG+CGG | + | chr5_4:39050525-39050544 | None:intergenic | 15.0% |
| !! | TATTATTGTACTATAAAAAG+AGG | - | chr5_4:39050689-39050708 | Msa0850240:CDS | 15.0% |
| !! | GTTAGAATGATATAAAATTT+AGG | + | chr5_4:39051412-39051431 | None:intergenic | 15.0% |
| !!! | AAATTTTATATCATTCTAAC+TGG | - | chr5_4:39051412-39051431 | Msa0850240:intron | 15.0% |
| !!! | TGTTAGAATATTTTTGTTTT+TGG | - | chr5_4:39051599-39051618 | Msa0850240:intron | 15.0% |
| !!! | CAACAATGATTTTTTTTTTT+TGG | - | chr5_4:39051793-39051812 | Msa0850240:intron | 15.0% |
| !!! | AATCTTAATAATTGATAATG+TGG | + | chr5_4:39052137-39052156 | None:intergenic | 15.0% |
| !! | AACACGAAAAAAAATAATTT+GGG | + | chr5_4:39052710-39052729 | None:intergenic | 15.0% |
| !! | AAACACGAAAAAAAATAATT+TGG | + | chr5_4:39052711-39052730 | None:intergenic | 15.0% |
| !!! | TATTTTGTAATTCTACTATG+AGG | - | chr5_4:39049644-39049663 | Msa0850240:three_prime_UTR | 20.0% |
| !!! | ATTTTGTAATTCTACTATGA+GGG | - | chr5_4:39049645-39049664 | Msa0850240:three_prime_UTR | 20.0% |
| !!! | AAGATTAGTTGTATATATAG+GGG | + | chr5_4:39049696-39049715 | None:intergenic | 20.0% |
| !!! | CTAAGATTAGTTGTATATAT+AGG | + | chr5_4:39049698-39049717 | None:intergenic | 20.0% |
| !! | TTTAAATCAAAAAAGTGAAG+AGG | - | chr5_4:39049722-39049741 | Msa0850240:three_prime_UTR | 20.0% |
| !!! | ATATTTTTTATAGGATGGAA+CGG | - | chr5_4:39050090-39050109 | Msa0850240:CDS | 20.0% |
| !! | ACACAAAATAATCAAATATG+AGG | + | chr5_4:39050298-39050317 | None:intergenic | 20.0% |
| !! | GTGTTTAATAAACAATTTGT+GGG | - | chr5_4:39050361-39050380 | Msa0850240:intron | 20.0% |
| !!! | CAAATATTGAAATTTTGTGT+AGG | + | chr5_4:39050594-39050613 | None:intergenic | 20.0% |
| !! | TTGTCATTACAAAAATTGTT+GGG | + | chr5_4:39050799-39050818 | None:intergenic | 20.0% |
| !! | ATTGTCATTACAAAAATTGT+TGG | + | chr5_4:39050800-39050819 | None:intergenic | 20.0% |
| !!! | ACAACTTTGATTTTTATCAT+CGG | + | chr5_4:39051320-39051339 | None:intergenic | 20.0% |
| !!! | TAATAAGCTTTTTTGTTTGA+AGG | - | chr5_4:39051353-39051372 | Msa0850240:intron | 20.0% |
| !!! | ATGAAGTGTTAATATTTCAT+TGG | + | chr5_4:39051465-39051484 | None:intergenic | 20.0% |
| !! | TACATAATATATGTAAGAGT+CGG | + | chr5_4:39051668-39051687 | None:intergenic | 20.0% |
| !! | ATGAAATATAATTGGGAAAA+AGG | - | chr5_4:39051744-39051763 | Msa0850240:CDS | 20.0% |
| !! | TGAAATATAATTGGGAAAAA+GGG | - | chr5_4:39051745-39051764 | Msa0850240:CDS | 20.0% |
| !!! | TATGTATAAGATTGATGATA+TGG | + | chr5_4:39051904-39051923 | None:intergenic | 20.0% |
| !!! | ACTCTTAATAATTGATAATG+TGG | + | chr5_4:39052032-39052051 | None:intergenic | 20.0% |
| !! | AAAAAACAGAGAAAATAATG+CGG | - | chr5_4:39052093-39052112 | Msa0850240:intron | 20.0% |
| !! | CTTAATAAGTGTATAAAAAG+TGG | + | chr5_4:39052245-39052264 | None:intergenic | 20.0% |
| !!! | CACTTTTTATACACTTATTA+AGG | - | chr5_4:39052243-39052262 | Msa0850240:intron | 20.0% |
| !! | ATAAAAAAGACTGTCTTAAT+TGG | + | chr5_4:39052377-39052396 | None:intergenic | 20.0% |
| !!! | ACAGTCTTTTTTATATTAGT+TGG | - | chr5_4:39052383-39052402 | Msa0850240:intron | 20.0% |
| !!! | CAGTCTTTTTTATATTAGTT+GGG | - | chr5_4:39052384-39052403 | Msa0850240:intron | 20.0% |
| !!! | TTTTTTATATTAGTTGGGTA+GGG | - | chr5_4:39052389-39052408 | Msa0850240:intron | 20.0% |
| !! | CATATTAAGGTAATCTTATT+GGG | - | chr5_4:39052418-39052437 | Msa0850240:intron | 20.0% |
| !!! | AATAATTTGGGTTTAATTCT+TGG | + | chr5_4:39052698-39052717 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTCGTGTTTTCTA+TGG | - | chr5_4:39052715-39052734 | Msa0850240:intron | 20.0% |
| !! | AAAATGTTAGTGACAAAAAA+TGG | - | chr5_4:39052994-39053013 | Msa0850240:intron | 20.0% |
| !! | TTTAAATGTCACTGATAATA+GGG | - | chr5_4:39053249-39053268 | Msa0850240:intron | 20.0% |
| !!! | TCATGGTCAATTATTTTTTA+AGG | + | chr5_4:39054231-39054250 | None:intergenic | 20.0% |
| !! | AAAAATGACTACAAAAGATT+TGG | - | chr5_4:39054489-39054508 | Msa0850240:intron | 20.0% |
| !! | AGTTAAGAAACCATATTTTG+AGG | + | chr5_4:39049793-39049812 | None:intergenic | 25.0% |
| ! | TTCAATCTAAACTTCTGATT+TGG | + | chr5_4:39049857-39049876 | None:intergenic | 25.0% |
| !!! | TATTTTTTATAGGATGGAAC+GGG | - | chr5_4:39050091-39050110 | Msa0850240:CDS | 25.0% |
| ! | ACAAAGAAACTTTCAGATTT+AGG | - | chr5_4:39050338-39050357 | Msa0850240:intron | 25.0% |
| ! | CAAAGAAACTTTCAGATTTA+GGG | - | chr5_4:39050339-39050358 | Msa0850240:intron | 25.0% |
| ! | GGTGTTTAATAAACAATTTG+TGG | - | chr5_4:39050360-39050379 | Msa0850240:intron | 25.0% |
| ! | TAATAAACAATTTGTGGGAT+TGG | - | chr5_4:39050366-39050385 | Msa0850240:intron | 25.0% |
| !!! | TGTCACTTTCTTTAACAATA+TGG | + | chr5_4:39050444-39050463 | None:intergenic | 25.0% |
| ! | TTTCTTTAAATAGTGTCACA+AGG | - | chr5_4:39050614-39050633 | Msa0850240:CDS | 25.0% |
| ! | TTCTTTAAATAGTGTCACAA+GGG | - | chr5_4:39050615-39050634 | Msa0850240:CDS | 25.0% |
| ! | ACTATAAAAAGAGGAATTCA+TGG | - | chr5_4:39050698-39050717 | Msa0850240:CDS | 25.0% |
| ! | TTCCAAATAACAAATGGTTA+TGG | - | chr5_4:39050842-39050861 | Msa0850240:CDS | 25.0% |
| ! | TCCAAATAACAAATGGTTAT+GGG | - | chr5_4:39050843-39050862 | Msa0850240:CDS | 25.0% |
| ! | AATGATACCTTCATTATTTG+TGG | + | chr5_4:39050881-39050900 | None:intergenic | 25.0% |
| ! | CGTTGTAAACTAAAGTTATT+AGG | - | chr5_4:39050906-39050925 | Msa0850240:intron | 25.0% |
| !! | GTTATTAGGAGTATAACTTT+AGG | - | chr5_4:39050920-39050939 | Msa0850240:intron | 25.0% |
| !!! | AGAACTCATACATTTTAACT+AGG | + | chr5_4:39050963-39050982 | None:intergenic | 25.0% |
| !! | TTTTTGTCAAGTAGTTTAGT+GGG | + | chr5_4:39050987-39051006 | None:intergenic | 25.0% |
| !!! | TTTTTTGTCAAGTAGTTTAG+TGG | + | chr5_4:39050988-39051007 | None:intergenic | 25.0% |
| !!! | TTTAGAGTGATCTTTTAACT+AGG | + | chr5_4:39051021-39051040 | None:intergenic | 25.0% |
| ! | ATTCATACAAAAATCTAGCT+AGG | - | chr5_4:39051261-39051280 | Msa0850240:CDS | 25.0% |
| ! | CATAACTAAAATACTGAATG+AGG | - | chr5_4:39051286-39051305 | Msa0850240:intron | 25.0% |
| ! | TTGGAATCATATGATGTAAT+GGG | + | chr5_4:39051446-39051465 | None:intergenic | 25.0% |
| ! | ATTGGAATCATATGATGTAA+TGG | + | chr5_4:39051447-39051466 | None:intergenic | 25.0% |
| ! | ACATAATATATGTAAGAGTC+GGG | + | chr5_4:39051667-39051686 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTGAAGGGAGAAA+GGG | + | chr5_4:39052288-39052307 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGAAGGGAGAA+AGG | + | chr5_4:39052289-39052308 | None:intergenic | 25.0% |
| !!! | CTTTTTTATATTAGTTGGGT+AGG | - | chr5_4:39052388-39052407 | Msa0850240:intron | 25.0% |
| ! | GCATATTAAGGTAATCTTAT+TGG | - | chr5_4:39052417-39052436 | Msa0850240:intron | 25.0% |
| ! | CATCAACTAACAAAAAAAGT+TGG | + | chr5_4:39052457-39052476 | None:intergenic | 25.0% |
| !!! | CAACTTTTTTTGTTAGTTGA+TGG | - | chr5_4:39052455-39052474 | Msa0850240:intron | 25.0% |
| ! | TTAAATATCCAGTAAGTCAA+TGG | + | chr5_4:39052492-39052511 | None:intergenic | 25.0% |
| ! | TTGTAAATGTAAACGTTTCA+CGG | - | chr5_4:39052744-39052763 | Msa0850240:intron | 25.0% |
| !!! | AAAGAATCTCATTTAGTTTG+TGG | + | chr5_4:39052961-39052980 | None:intergenic | 25.0% |
| ! | TTAGACGAAATCAATGTATT+TGG | + | chr5_4:39053063-39053082 | None:intergenic | 25.0% |
| ! | ATAACCAAATGCAATTGATA+TGG | - | chr5_4:39053140-39053159 | Msa0850240:intron | 25.0% |
| ! | CTTTAAATGTCACTGATAAT+AGG | - | chr5_4:39053248-39053267 | Msa0850240:intron | 25.0% |
| ! | TAATGTCATATTATGAAGCA+CGG | + | chr5_4:39053612-39053631 | None:intergenic | 25.0% |
| !!! | TTCTATTTTTTATGTGTCGT+AGG | - | chr5_4:39053701-39053720 | Msa0850240:CDS | 25.0% |
| ! | AAGTTTGAACAAATACTACA+TGG | - | chr5_4:39053795-39053814 | Msa0850240:CDS | 25.0% |
| !! | AATTTTGTTACAACCTCAAA+TGG | - | chr5_4:39054036-39054055 | Msa0850240:intron | 25.0% |
| ! | TTGGAAATGACACTATAAAA+TGG | + | chr5_4:39054126-39054145 | None:intergenic | 25.0% |
| !! | GGTTATATTTTCTCTCAAAA+AGG | + | chr5_4:39054273-39054292 | None:intergenic | 25.0% |
| ! | AACAATGTGAATTTGATTCA+AGG | - | chr5_4:39054429-39054448 | Msa0850240:CDS | 25.0% |
| !! | AGAGTGAAGTACTTAAATAA+AGG | + | chr5_4:39054684-39054703 | None:intergenic | 25.0% |
| ! | TTACATTCTTCTCAGTAAAT+GGG | + | chr5_4:39054756-39054775 | None:intergenic | 25.0% |
| ! | TTTACATTCTTCTCAGTAAA+TGG | + | chr5_4:39054757-39054776 | None:intergenic | 25.0% |
| TAGTTGTATATATAGGGGAT+AGG | + | chr5_4:39049691-39049710 | None:intergenic | 30.0% | |
| ACTGTATCAACCTCAAAATA+TGG | - | chr5_4:39049780-39049799 | Msa0850240:three_prime_UTR | 30.0% | |
| ! | CAAGAAGTCTTTATTTGGAA+TGG | + | chr5_4:39049942-39049961 | None:intergenic | 30.0% |
| CATTCCAAATAAAGACTTCT+TGG | - | chr5_4:39049940-39049959 | Msa0850240:exon | 30.0% | |
| CTAACCAAGAAGTCTTTATT+TGG | + | chr5_4:39049947-39049966 | None:intergenic | 30.0% | |
| ! | TATTTTGTGTATTGCAGTTG+TGG | - | chr5_4:39050308-39050327 | Msa0850240:intron | 30.0% |
| ATGGAATGTTTCAGAATCAA+TGG | + | chr5_4:39050425-39050444 | None:intergenic | 30.0% | |
| TTCAAATGGATACTTCATAC+AGG | - | chr5_4:39050489-39050508 | Msa0850240:intron | 30.0% | |
| AAATATAGTATATACTGCGG+AGG | + | chr5_4:39050522-39050541 | None:intergenic | 30.0% | |
| ! | CCGATCTTATTTATAACGAA+GGG | + | chr5_4:39050554-39050573 | None:intergenic | 30.0% |
| CCCTTCGTTATAAATAAGAT+CGG | - | chr5_4:39050551-39050570 | Msa0850240:CDS | 30.0% | |
| ! | TCCGATCTTATTTATAACGA+AGG | + | chr5_4:39050555-39050574 | None:intergenic | 30.0% |
| TTGTAATGACAATTGCTGAT+AGG | - | chr5_4:39050807-39050826 | Msa0850240:CDS | 30.0% | |
| GGTGAATTCCAAATAACAAA+TGG | - | chr5_4:39050836-39050855 | Msa0850240:CDS | 30.0% | |
| TATAACTCCACATCTATACA+AGG | - | chr5_4:39051099-39051118 | Msa0850240:intron | 30.0% | |
| ATTATTATATGCTTGCCACT+AGG | - | chr5_4:39051164-39051183 | Msa0850240:CDS | 30.0% | |
| !!! | TTTTTTTTCAAGTAGCCTAG+TGG | + | chr5_4:39051182-39051201 | None:intergenic | 30.0% |
| AAATCTATACAACTAGTGCT+AGG | - | chr5_4:39051204-39051223 | Msa0850240:CDS | 30.0% | |
| CATAATATATGTAAGAGTCG+GGG | + | chr5_4:39051666-39051685 | None:intergenic | 30.0% | |
| GAATAAGTGCTTGAGAATAT+AGG | + | chr5_4:39051843-39051862 | None:intergenic | 30.0% | |
| TTAATCTTGACCATTGTCAT+TGG | - | chr5_4:39052162-39052181 | Msa0850240:intron | 30.0% | |
| AAAGGGAAAATATACTTGGT+GGG | + | chr5_4:39052271-39052290 | None:intergenic | 30.0% | |
| GCTAGTTGCGATAATAAAAA+GGG | + | chr5_4:39052325-39052344 | None:intergenic | 30.0% | |
| TGCTAGTTGCGATAATAAAA+AGG | + | chr5_4:39052326-39052345 | None:intergenic | 30.0% | |
| CAACTAACAAAAAAAGTTGG+TGG | + | chr5_4:39052454-39052473 | None:intergenic | 30.0% | |
| TAAACTGTAGAGATACTTCT+GGG | + | chr5_4:39052643-39052662 | None:intergenic | 30.0% | |
| TGTAAATGTAAACGTTTCAC+GGG | - | chr5_4:39052745-39052764 | Msa0850240:intron | 30.0% | |
| !! | ATGATTTCAAGTTCATAGCT+AGG | - | chr5_4:39052810-39052829 | Msa0850240:intron | 30.0% |
| ! | ACTAGACAATGCATTTTTGT+GGG | - | chr5_4:39052925-39052944 | Msa0850240:intron | 30.0% |
| GTTAGTGACAAAAAATGGAA+AGG | - | chr5_4:39052999-39053018 | Msa0850240:intron | 30.0% | |
| ! | TGGTGATGTAAATGATTCAA+AGG | + | chr5_4:39053043-39053062 | None:intergenic | 30.0% |
| ACAACCATATCAATTGCATT+TGG | + | chr5_4:39053147-39053166 | None:intergenic | 30.0% | |
| TGATGTATCTGCAGAAAATA+TGG | - | chr5_4:39053279-39053298 | Msa0850240:intron | 30.0% | |
| TACATATAAGCAATGAAGCA+CGG | - | chr5_4:39053459-39053478 | Msa0850240:intron | 30.0% | |
| TTGAACAAATACTACATGGA+TGG | - | chr5_4:39053799-39053818 | Msa0850240:CDS | 30.0% | |
| AAAAATAAGAGGACCATTTG+AGG | + | chr5_4:39054052-39054071 | None:intergenic | 30.0% | |
| !!! | AATGGTCCTCTTATTTTTGT+CGG | - | chr5_4:39054054-39054073 | Msa0850240:intron | 30.0% |
| TACTAACCGACAAAAATAAG+AGG | + | chr5_4:39054063-39054082 | None:intergenic | 30.0% | |
| AAGTCAAAGAATCAAACTCA+TGG | + | chr5_4:39054248-39054267 | None:intergenic | 30.0% | |
| CTATGAGACTAATCTTCAAA+TGG | + | chr5_4:39054324-39054343 | None:intergenic | 30.0% | |
| TTAGTCTCATAGAAAACCTT+AGG | - | chr5_4:39054332-39054351 | Msa0850240:intron | 30.0% | |
| TAGTCTCATAGAAAACCTTA+GGG | - | chr5_4:39054333-39054352 | Msa0850240:intron | 30.0% | |
| TGAATTTGATTCAAGGTGAA+TGG | - | chr5_4:39054436-39054455 | Msa0850240:CDS | 30.0% | |
| GAATTTGATTCAAGGTGAAT+GGG | - | chr5_4:39054437-39054456 | Msa0850240:CDS | 30.0% | |
| ! | TGACTACAAAAGATTTGGTA+AGG | - | chr5_4:39054494-39054513 | Msa0850240:intron | 30.0% |
| AAGGCTCAATTAGATGTTTA+TGG | - | chr5_4:39054513-39054532 | Msa0850240:intron | 30.0% | |
| AGGCTCAATTAGATGTTTAT+GGG | - | chr5_4:39054514-39054533 | Msa0850240:intron | 30.0% | |
| AAACTAGTTCAAAACACGAT+CGG | - | chr5_4:39054819-39054838 | Msa0850240:five_prime_UTR | 30.0% | |
| ATATATAGGGGATAGGTGAT+GGG | + | chr5_4:39049684-39049703 | None:intergenic | 35.0% | |
| TATATATAGGGGATAGGTGA+TGG | + | chr5_4:39049685-39049704 | None:intergenic | 35.0% | |
| TTATGCTTTCTACCACACAT+GGG | - | chr5_4:39049828-39049847 | Msa0850240:three_prime_UTR | 35.0% | |
| AGATTGAAAGCAGTTAACCT+TGG | - | chr5_4:39049869-39049888 | Msa0850240:three_prime_UTR | 35.0% | |
| AAATATTTGTGTGCAGAGTC+TGG | - | chr5_4:39050142-39050161 | Msa0850240:intron | 35.0% | |
| AAACAATTTGTGGGATTGGA+TGG | - | chr5_4:39050370-39050389 | Msa0850240:intron | 35.0% | |
| ! | TTGAAGCTTTGATTCGAACA+CGG | + | chr5_4:39050474-39050493 | None:intergenic | 35.0% |
| GTTCGAATCAAAGCTTCAAA+TGG | - | chr5_4:39050475-39050494 | Msa0850240:intron | 35.0% | |
| AAAAAGAGGAATTCATGGAG+AGG | - | chr5_4:39050703-39050722 | Msa0850240:CDS | 35.0% | |
| !! | GCCCATAACCATTTGTTATT+TGG | + | chr5_4:39050847-39050866 | None:intergenic | 35.0% |
| GAAAGCTCCACAAATAATGA+AGG | - | chr5_4:39050871-39050890 | Msa0850240:intron | 35.0% | |
| ! | TAGGAGTATAACTTTAGGCT+TGG | - | chr5_4:39050925-39050944 | Msa0850240:intron | 35.0% |
| ATAGATGTGGAGTTATACGT+TGG | + | chr5_4:39051096-39051115 | None:intergenic | 35.0% | |
| !! | TTTTTGGTCAAATAGCCTAG+TGG | - | chr5_4:39051615-39051634 | Msa0850240:intron | 35.0% |
| AATAGCCTAGTGGTTAAAAC+TGG | - | chr5_4:39051625-39051644 | Msa0850240:intron | 35.0% | |
| TACCAACTGAGTTAAGTTCA+TGG | - | chr5_4:39051695-39051714 | Msa0850240:CDS | 35.0% | |
| ACCAACTGAGTTAAGTTCAT+GGG | - | chr5_4:39051696-39051715 | Msa0850240:CDS | 35.0% | |
| ATTGGGAAAAAGGGAATATG+TGG | - | chr5_4:39051754-39051773 | Msa0850240:CDS | 35.0% | |
| TTAATCTTGACCATCGTCAT+TGG | - | chr5_4:39052057-39052076 | Msa0850240:intron | 35.0% | |
| GAAAGGGAAAATATACTTGG+TGG | + | chr5_4:39052272-39052291 | None:intergenic | 35.0% | |
| GGAGAAAGGGAAAATATACT+TGG | + | chr5_4:39052275-39052294 | None:intergenic | 35.0% | |
| AGGTAATCTTATTGGGACAA+TGG | - | chr5_4:39052425-39052444 | Msa0850240:intron | 35.0% | |
| CTAAACTGTAGAGATACTTC+TGG | + | chr5_4:39052644-39052663 | None:intergenic | 35.0% | |
| GTAAATGTAAACGTTTCACG+GGG | - | chr5_4:39052746-39052765 | Msa0850240:intron | 35.0% | |
| GTTCATATTTCCAGGAACAT+TGG | - | chr5_4:39052768-39052787 | Msa0850240:intron | 35.0% | |
| ! | TTCAAGTTCATAGCTAGGAA+TGG | - | chr5_4:39052815-39052834 | Msa0850240:intron | 35.0% |
| AAATGCAGTTAGAATTCCAG+TGG | - | chr5_4:39052841-39052860 | Msa0850240:intron | 35.0% | |
| AATGCAGTTAGAATTCCAGT+GGG | - | chr5_4:39052842-39052861 | Msa0850240:intron | 35.0% | |
| ! | CACTAGACAATGCATTTTTG+TGG | - | chr5_4:39052924-39052943 | Msa0850240:intron | 35.0% |
| TGCAATTGATATGGTTGTCA+TGG | - | chr5_4:39053149-39053168 | Msa0850240:intron | 35.0% | |
| GTAATTATAGATGTCGACAC+CGG | + | chr5_4:39053508-39053527 | None:intergenic | 35.0% | |
| AGTTCAACTGCATAAAGACT+TGG | + | chr5_4:39053739-39053758 | None:intergenic | 35.0% | |
| GTGGTGTTCTCAAATAGATT+AGG | - | chr5_4:39053859-39053878 | Msa0850240:intron | 35.0% | |
| GAATTCTTTCCTCTTGCTAA+TGG | - | chr5_4:39053898-39053917 | Msa0850240:intron | 35.0% | |
| AACCTTTGGGTATGCTTATT+GGG | - | chr5_4:39054542-39054561 | Msa0850240:intron | 35.0% | |
| TCAAGAACGTGAACAAACAT+TGG | - | chr5_4:39054568-39054587 | Msa0850240:intron | 35.0% | |
| ACAAACATTGGAGTCTAGAA+TGG | - | chr5_4:39054580-39054599 | Msa0850240:intron | 35.0% | |
| CTAGAATGGATGATGAAGAA+TGG | - | chr5_4:39054594-39054613 | Msa0850240:intron | 35.0% | |
| TTCTTCTCAGTAAATGGGAT+TGG | + | chr5_4:39054751-39054770 | None:intergenic | 35.0% | |
| TATATAGGGGATAGGTGATG+GGG | + | chr5_4:39049683-39049702 | Msa0850230:CDS | 40.0% | |
| GTTATGCTTTCTACCACACA+TGG | - | chr5_4:39049827-39049846 | Msa0850240:three_prime_UTR | 40.0% | |
| TTGAAAGCAGTTAACCTTGG+TGG | - | chr5_4:39049872-39049891 | Msa0850240:three_prime_UTR | 40.0% | |
| ! | TGAAGCTTTGATTCGAACAC+GGG | + | chr5_4:39050473-39050492 | None:intergenic | 40.0% |
| AGTGACTGCTGATGTATCAT+TGG | - | chr5_4:39050751-39050770 | Msa0850240:CDS | 40.0% | |
| GCTGATGTATCATTGGTCAA+CGG | - | chr5_4:39050758-39050777 | Msa0850240:CDS | 40.0% | |
| ATGTATCATTGGTCAACGGA+TGG | - | chr5_4:39050762-39050781 | Msa0850240:CDS | 40.0% | |
| ACAATTGCTGATAGGATGCA+AGG | - | chr5_4:39050815-39050834 | Msa0850240:CDS | 40.0% | |
| CAACACTCCTTGTATAGATG+TGG | + | chr5_4:39051109-39051128 | None:intergenic | 40.0% | |
| TAGTGGTTAAAACTGGTGTG+CGG | - | chr5_4:39051632-39051651 | Msa0850240:intron | 40.0% | |
| TCCCATGAACTTAACTCAGT+TGG | + | chr5_4:39051700-39051719 | None:intergenic | 40.0% | |
| CTTCACGTTACCAATGACAA+TGG | + | chr5_4:39052175-39052194 | None:intergenic | 40.0% | |
| ATATTAGTTGGGTAGGGCAA+TGG | - | chr5_4:39052395-39052414 | Msa0850240:intron | 40.0% | |
| ! | GAGATACTTCTGGGAAACTA+TGG | + | chr5_4:39052634-39052653 | None:intergenic | 40.0% |
| TAAAACTGCTCCAATGTTCC+TGG | + | chr5_4:39052781-39052800 | None:intergenic | 40.0% | |
| TGCATTGTCTAGTGCTTGTA+AGG | + | chr5_4:39052918-39052937 | None:intergenic | 40.0% | |
| AAGAGACGGTTCACAAGAAT+GGG | - | chr5_4:39053368-39053387 | Msa0850240:intron | 40.0% | |
| !! | TCATTGACTTCCTAACTGCA+AGG | - | chr5_4:39053427-39053446 | Msa0850240:intron | 40.0% |
| AATGTATGCACCTTGCAGTT+AGG | + | chr5_4:39053440-39053459 | None:intergenic | 40.0% | |
| ! | CACGGATACTTTTCAGACTA+GGG | - | chr5_4:39053477-39053496 | Msa0850240:intron | 40.0% |
| ! | TTTTCAGACTAGGGATGTTC+CGG | - | chr5_4:39053486-39053505 | Msa0850240:intron | 40.0% |
| ! | AAACTTTCTAGTGTTGCACC+AGG | + | chr5_4:39053781-39053800 | None:intergenic | 40.0% |
| GCACTCTTCTACTGTATTTG+TGG | - | chr5_4:39053840-39053859 | Msa0850240:intron | 40.0% | |
| AAAGAATTCTCTAGGCATGG+AGG | + | chr5_4:39053887-39053906 | None:intergenic | 40.0% | |
| AGGAAAGAATTCTCTAGGCA+TGG | + | chr5_4:39053890-39053909 | None:intergenic | 40.0% | |
| GCAAGAGGAAAGAATTCTCT+AGG | + | chr5_4:39053895-39053914 | None:intergenic | 40.0% | |
| CATCAATCACTGATCCCATA+AGG | + | chr5_4:39053924-39053943 | None:intergenic | 40.0% | |
| TTTATCCAACATGCACCCTA+AGG | + | chr5_4:39054351-39054370 | None:intergenic | 40.0% | |
| TTTATGGGAGAGCAACCTTT+GGG | - | chr5_4:39054529-39054548 | Msa0850240:intron | 40.0% | |
| CAACCTTTGGGTATGCTTAT+TGG | - | chr5_4:39054541-39054560 | Msa0850240:intron | 40.0% | |
| CTACAAGATGGTAGTCTTTC+TGG | + | chr5_4:39054924-39054943 | None:intergenic | 40.0% | |
| ! | AAGCAGTTAACCTTGGTGGT+TGG | - | chr5_4:39049876-39049895 | Msa0850240:three_prime_UTR | 45.0% |
| ! | AGTTAACCTTGGTGGTTGGT+TGG | - | chr5_4:39049880-39049899 | Msa0850240:three_prime_UTR | 45.0% |
| ! | GTTGGTTGGTTACTGAAGGT+TGG | - | chr5_4:39049894-39049913 | Msa0850240:three_prime_UTR | 45.0% |
| GGAATGGCATCAAAGAGTGA+AGG | + | chr5_4:39049926-39049945 | None:intergenic | 45.0% | |
| TATTTGTGTGCAGAGTCTGG+AGG | - | chr5_4:39050145-39050164 | Msa0850240:intron | 45.0% | |
| AATTCATGGAGAGGATCTGC+AGG | - | chr5_4:39050712-39050731 | Msa0850240:CDS | 45.0% | |
| TGTCAACTGAGCTATGCTCA+CGG | + | chr5_4:39051135-39051154 | None:intergenic | 45.0% | |
| TGAGCATAGCTCAGTTGACA+GGG | - | chr5_4:39051135-39051154 | Msa0850240:intron | 45.0% | |
| AGGTTAGAGCTCAAGAGAAG+AGG | - | chr5_4:39051224-39051243 | Msa0850240:CDS | 45.0% | |
| !! | GCACACCAGTTTTAACCACT+AGG | + | chr5_4:39051633-39051652 | None:intergenic | 45.0% |
| AGTGGTTAAAACTGGTGTGC+GGG | - | chr5_4:39051633-39051652 | Msa0850240:intron | 45.0% | |
| CTTCACGTTACCAATGACGA+TGG | + | chr5_4:39052070-39052089 | None:intergenic | 45.0% | |
| GGTAGGGCAATGGCATATTA+AGG | - | chr5_4:39052405-39052424 | Msa0850240:intron | 45.0% | |
| CCAGTAAGTCAATGGATGAC+TGG | + | chr5_4:39052484-39052503 | None:intergenic | 45.0% | |
| !! | CCAGTCATCCATTGACTTAC+TGG | - | chr5_4:39052481-39052500 | Msa0850240:intron | 45.0% |
| TTCACGGGGTTCATATTTCC+AGG | - | chr5_4:39052760-39052779 | Msa0850240:intron | 45.0% | |
| CAGTTAGAATTCCAGTGGGT+TGG | - | chr5_4:39052846-39052865 | Msa0850240:intron | 45.0% | |
| !! | TTAGAATTCCAGTGGGTTGG+TGG | - | chr5_4:39052849-39052868 | Msa0850240:intron | 45.0% |
| ATTGATCTTCATGCAGCACC+TGG | - | chr5_4:39053315-39053334 | Msa0850240:intron | 45.0% | |
| !! | TCATAGCCATTTTGAGAGCC+AGG | + | chr5_4:39053336-39053355 | None:intergenic | 45.0% |
| GAGCATAGCTCTTCAAGAGA+CGG | - | chr5_4:39053354-39053373 | Msa0850240:intron | 45.0% | |
| CAAGAGACGGTTCACAAGAA+TGG | - | chr5_4:39053367-39053386 | Msa0850240:intron | 45.0% | |
| AGAGACGGTTCACAAGAATG+GGG | - | chr5_4:39053369-39053388 | Msa0850240:intron | 45.0% | |
| ! | GCACGGATACTTTTCAGACT+AGG | - | chr5_4:39053476-39053495 | Msa0850240:intron | 45.0% |
| CTAAATGAGCCTCTATCACC+TGG | - | chr5_4:39053760-39053779 | Msa0850240:CDS | 45.0% | |
| ! | TCCTCTTGCTAATGGCCTTA+TGG | - | chr5_4:39053906-39053925 | Msa0850240:intron | 45.0% |
| !! | CCTCTTGCTAATGGCCTTAT+GGG | - | chr5_4:39053907-39053926 | Msa0850240:intron | 45.0% |
| GTCCACTACTACAGCATCTT+TGG | - | chr5_4:39053943-39053962 | Msa0850240:intron | 45.0% | |
| CTCCAAAGATGCTGTAGTAG+TGG | + | chr5_4:39053948-39053967 | None:intergenic | 45.0% | |
| GAAAACCTTAGGGTGCATGT+TGG | - | chr5_4:39054343-39054362 | Msa0850240:intron | 45.0% | |
| TGCTGAGTGGCAAGTTAAAG+AGG | - | chr5_4:39054461-39054480 | Msa0850240:CDS | 45.0% | |
| GTTTATGGGAGAGCAACCTT+TGG | - | chr5_4:39054528-39054547 | Msa0850240:intron | 45.0% | |
| TGCCCAATAAGCATACCCAA+AGG | + | chr5_4:39054547-39054566 | None:intergenic | 45.0% | |
| ! | TCTGGTCTCTTTTTCTCTCG+AGG | + | chr5_4:39054906-39054925 | None:intergenic | 45.0% |
| !! | TTCATATAAATATTTATATT+TGG | + | chr5_4:39054145-39054164 | None:intergenic | 5.0% |
| !! | CTGATTTGGTCTCCCATGTG+TGG | + | chr5_4:39049843-39049862 | None:intergenic | 50.0% |
| CAGTAACCAACCAACCACCA+AGG | + | chr5_4:39049889-39049908 | None:intergenic | 50.0% | |
| ! | GGTGGTTGGTTGGTTACTGA+AGG | - | chr5_4:39049890-39049909 | Msa0850240:three_prime_UTR | 50.0% |
| TGAGCGGTTTGCAACAAGGA+TGG | + | chr5_4:39050176-39050195 | None:intergenic | 50.0% | |
| CACTTGAGCGGTTTGCAACA+AGG | + | chr5_4:39050180-39050199 | None:intergenic | 50.0% | |
| ! | AGCTTTGATTCGAACACGGG+TGG | + | chr5_4:39050470-39050489 | None:intergenic | 50.0% |
| AGAGGATCTGCAGGCAAAGA+CGG | - | chr5_4:39050721-39050740 | Msa0850240:CDS | 50.0% | |
| GTGAGCATAGCTCAGTTGAC+AGG | - | chr5_4:39051134-39051153 | Msa0850240:intron | 50.0% | |
| GTCTCCTCATTCACACGTGA+TGG | - | chr5_4:39052347-39052366 | Msa0850240:intron | 50.0% | |
| TCCTCATTCACACGTGATGG+TGG | - | chr5_4:39052350-39052369 | Msa0850240:intron | 50.0% | |
| ACCACCATCACGTGTGAATG+AGG | + | chr5_4:39052354-39052373 | None:intergenic | 50.0% | |
| CTACTGATCCAACTCCACCA+TGG | - | chr5_4:39052876-39052895 | Msa0850240:intron | 50.0% | |
| TGTAAGGAACCTCCCACGTA+GGG | + | chr5_4:39052902-39052921 | None:intergenic | 50.0% | |
| TTGTAAGGAACCTCCCACGT+AGG | + | chr5_4:39052903-39052922 | None:intergenic | 50.0% | |
| AGTGTTGCACCAGGTGATAG+AGG | + | chr5_4:39053772-39053791 | None:intergenic | 50.0% | |
| CCCATAAGGCCATTAGCAAG+AGG | + | chr5_4:39053910-39053929 | None:intergenic | 50.0% | |
| !! | AAGGTGAATGGGTTGCTGAG+TGG | - | chr5_4:39054448-39054467 | Msa0850240:CDS | 50.0% |
| TTGTGTGCAGAGTCTGGAGG+AGG | - | chr5_4:39050148-39050167 | Msa0850240:intron | 55.0% | |
| GCAAACCGCTCAAGTGCTTC+TGG | - | chr5_4:39050184-39050203 | Msa0850240:intron | 55.0% | |
| ACCGCTCAAGTGCTTCTGGT+TGG | - | chr5_4:39050188-39050207 | Msa0850240:intron | 55.0% | |
| !! | CCCAACCAGAAGCACTTGAG+CGG | + | chr5_4:39050192-39050211 | None:intergenic | 55.0% |
| ! | CCGCTCAAGTGCTTCTGGTT+GGG | - | chr5_4:39050189-39050208 | Msa0850240:intron | 55.0% |
| TCTGCAGGCAAAGACGGAAG+AGG | - | chr5_4:39050727-39050746 | Msa0850240:CDS | 55.0% | |
| GTAGCTATCCACCAACCCAC+TGG | + | chr5_4:39052860-39052879 | None:intergenic | 55.0% | |
| ! | GCAGCACCTGGCTCTCAAAA+TGG | - | chr5_4:39053327-39053346 | Msa0850240:intron | 55.0% |
| CTGACATCGACACGTCGACA+CGG | + | chr5_4:39053562-39053581 | None:intergenic | 55.0% | |
| GTCGATGTCAGTGTCGTGTC+TGG | - | chr5_4:39053571-39053590 | Msa0850240:intron | 55.0% | |
| ! | ACGTAGGGCCATGGTGGAGT+TGG | + | chr5_4:39052887-39052906 | None:intergenic | 60.0% |
| AACTCCACCATGGCCCTACG+TGG | - | chr5_4:39052886-39052905 | Msa0850240:intron | 60.0% | |
| ACTCCACCATGGCCCTACGT+GGG | - | chr5_4:39052887-39052906 | Msa0850240:intron | 60.0% | |
| GAACCTCCCACGTAGGGCCA+TGG | + | chr5_4:39052896-39052915 | None:intergenic | 65.0% | |
| CCTCCCACGTAGGGCCATGG+TGG | + | chr5_4:39052893-39052912 | None:intergenic | 70.0% | |
| CCACCATGGCCCTACGTGGG+AGG | - | chr5_4:39052890-39052909 | Msa0850240:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 39049639 | 39054947 | 39049639 | ID=Msa0850240;Name=Msa0850240 |
| chr5_4 | mRNA | 39049639 | 39054947 | 39049639 | ID=Msa0850240-mRNA-1;Parent=Msa0850240;Name=Msa0850240-mRNA-1;_AED=0.15;_eAED=0.15;_QI=131|1|1|1|1|1|8|315|505 |
| chr5_4 | exon | 39049639 | 39050135 | 39049639 | ID=Msa0850240-mRNA-1:exon:12504;Parent=Msa0850240-mRNA-1 |
| chr5_4 | exon | 39050511 | 39050863 | 39050511 | ID=Msa0850240-mRNA-1:exon:12503;Parent=Msa0850240-mRNA-1 |
| chr5_4 | exon | 39051138 | 39051293 | 39051138 | ID=Msa0850240-mRNA-1:exon:12502;Parent=Msa0850240-mRNA-1 |
| chr5_4 | exon | 39051635 | 39051804 | 39051635 | ID=Msa0850240-mRNA-1:exon:12501;Parent=Msa0850240-mRNA-1 |
| chr5_4 | exon | 39053694 | 39053852 | 39053694 | ID=Msa0850240-mRNA-1:exon:12500;Parent=Msa0850240-mRNA-1 |
| chr5_4 | exon | 39054076 | 39054261 | 39054076 | ID=Msa0850240-mRNA-1:exon:12499;Parent=Msa0850240-mRNA-1 |
| chr5_4 | exon | 39054364 | 39054483 | 39054364 | ID=Msa0850240-mRNA-1:exon:12498;Parent=Msa0850240-mRNA-1 |
| chr5_4 | exon | 39054625 | 39054947 | 39054625 | ID=Msa0850240-mRNA-1:exon:12497;Parent=Msa0850240-mRNA-1 |
| chr5_4 | five_prime_UTR | 39054817 | 39054947 | 39054817 | ID=Msa0850240-mRNA-1:five_prime_utr;Parent=Msa0850240-mRNA-1 |
| chr5_4 | CDS | 39054625 | 39054816 | 39054625 | ID=Msa0850240-mRNA-1:cds;Parent=Msa0850240-mRNA-1 |
| chr5_4 | CDS | 39054364 | 39054483 | 39054364 | ID=Msa0850240-mRNA-1:cds;Parent=Msa0850240-mRNA-1 |
| chr5_4 | CDS | 39054076 | 39054261 | 39054076 | ID=Msa0850240-mRNA-1:cds;Parent=Msa0850240-mRNA-1 |
| chr5_4 | CDS | 39053694 | 39053852 | 39053694 | ID=Msa0850240-mRNA-1:cds;Parent=Msa0850240-mRNA-1 |
| chr5_4 | CDS | 39051635 | 39051804 | 39051635 | ID=Msa0850240-mRNA-1:cds;Parent=Msa0850240-mRNA-1 |
| chr5_4 | CDS | 39051138 | 39051293 | 39051138 | ID=Msa0850240-mRNA-1:cds;Parent=Msa0850240-mRNA-1 |
| chr5_4 | CDS | 39050511 | 39050863 | 39050511 | ID=Msa0850240-mRNA-1:cds;Parent=Msa0850240-mRNA-1 |
| chr5_4 | CDS | 39049954 | 39050135 | 39049954 | ID=Msa0850240-mRNA-1:cds;Parent=Msa0850240-mRNA-1 |
| chr5_4 | three_prime_UTR | 39049639 | 39049953 | 39049639 | ID=Msa0850240-mRNA-1:three_prime_utr;Parent=Msa0850240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
