Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0809740 | XP_003615000.1 | 95.446 | 505 | 22 | 1 | 2 | 505 | 1 | 505 | 0.0 | 999 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0809740 | sp|Q7Z9L3|EXGA_ASPOR | 37.313 | 268 | 149 | 11 | 188 | 450 | 48 | 301 | 3.19e-40 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0809740 | G7KA56 | 95.446 | 505 | 22 | 1 | 2 | 505 | 1 | 505 | 0.0 | 999 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048000 | Msa0809740 | 0.819667 | 1.029824e-52 | -8.615850e-47 |
| Msa0101880 | Msa0809740 | 0.805196 | 1.500531e-49 | -8.615850e-47 |
| Msa0613460 | Msa0809740 | 0.801283 | 9.686656e-49 | -8.615850e-47 |
| Msa0626280 | Msa0809740 | 0.808449 | 3.080148e-50 | -8.615850e-47 |
| Msa0629630 | Msa0809740 | 0.822749 | 2.005291e-53 | -8.615850e-47 |
| Msa0648520 | Msa0809740 | 0.810572 | 1.078196e-50 | -8.615850e-47 |
| Msa0658570 | Msa0809740 | 0.823086 | 1.674154e-53 | -8.615850e-47 |
| Msa0691050 | Msa0809740 | 0.812833 | 3.474076e-51 | -8.615850e-47 |
| Msa0703490 | Msa0809740 | 0.832568 | 8.776592e-56 | -8.615850e-47 |
| Msa0731470 | Msa0809740 | 0.905133 | 5.922229e-80 | -8.615850e-47 |
| Msa0743680 | Msa0809740 | 0.829417 | 5.206967e-55 | -8.615850e-47 |
| Msa0757080 | Msa0809740 | 0.800537 | 1.376002e-48 | -8.615850e-47 |
| Msa0771690 | Msa0809740 | 0.811246 | 7.706538e-51 | -8.615850e-47 |
| Msa0784620 | Msa0809740 | 0.811869 | 5.642775e-51 | -8.615850e-47 |
| Msa0809740 | Msa0810760 | 0.807776 | 4.283782e-50 | -8.615850e-47 |
| Msa0809740 | Msa0834440 | 0.803853 | 2.859660e-49 | -8.615850e-47 |
| Msa0809740 | Msa0850240 | 0.883115 | 5.896515e-71 | -8.615850e-47 |
| Msa0809740 | Msa0863800 | 0.835824 | 1.340110e-56 | -8.615850e-47 |
| Msa0809740 | Msa0891040 | 0.815463 | 9.128643e-52 | -8.615850e-47 |
| Msa0809740 | Msa0908170 | 0.815644 | 8.316537e-52 | -8.615850e-47 |
| Msa0809740 | Msa0994740 | 0.802343 | 5.868501e-49 | -8.615850e-47 |
| Msa0809740 | Msa1028270 | 0.815991 | 6.962005e-52 | -8.615850e-47 |
| Msa0809740 | Msa1049240 | 0.820303 | 7.365608e-53 | -8.615850e-47 |
| Msa0809740 | Msa1077670 | 0.801179 | 1.017546e-48 | -8.615850e-47 |
| Msa0809740 | Msa1112370 | 0.801915 | 7.186029e-49 | -8.615850e-47 |
| Msa0809740 | Msa1152210 | 0.811433 | 7.019011e-51 | -8.615850e-47 |
| Msa0809740 | Msa1213020 | 0.820356 | 7.163079e-53 | -8.615850e-47 |
| Msa0809740 | Msa1219810 | 0.809228 | 2.099357e-50 | -8.615850e-47 |
| Msa0809740 | Msa1300090 | 0.832657 | 8.339517e-56 | -8.615850e-47 |
| Msa0809740 | Msa1376890 | 0.832602 | 8.607775e-56 | -8.615850e-47 |
| Msa0809740 | Msa1390120 | 0.821800 | 3.330613e-53 | -8.615850e-47 |
| Msa0809740 | Msa1395530 | 0.824235 | 9.009152e-54 | -8.615850e-47 |
| Msa0809740 | Msa1397260 | 0.871220 | 8.067704e-67 | -8.615850e-47 |
| Msa0809740 | Msa1401140 | 0.876436 | 1.398448e-68 | -8.615850e-47 |
| Msa0809740 | Msa1404540 | 0.820921 | 5.312789e-53 | -8.615850e-47 |
| Msa0809740 | Msa1431060 | 0.826318 | 2.897737e-54 | -8.615850e-47 |
| Msa0809740 | Msa1447110 | 0.803852 | 2.860465e-49 | -8.615850e-47 |
| Msa0196020 | Msa0809740 | -0.835504 | 1.614488e-56 | -8.615850e-47 |
| Msa0223380 | Msa0809740 | 0.810989 | 8.759850e-51 | -8.615850e-47 |
| Msa0377530 | Msa0809740 | 0.835989 | 1.216733e-56 | -8.615850e-47 |
| Msa0388030 | Msa0809740 | -0.842679 | 2.231487e-58 | -8.615850e-47 |
| Msa0422500 | Msa0809740 | 0.820012 | 8.587594e-53 | -8.615850e-47 |
| Msa0450350 | Msa0809740 | 0.820154 | 7.966852e-53 | -8.615850e-47 |
| Msa0464900 | Msa0809740 | 0.811363 | 7.269541e-51 | -8.615850e-47 |
| Msa0260810 | Msa0809740 | 0.815739 | 7.923729e-52 | -8.615850e-47 |
| Msa0266000 | Msa0809740 | -0.825895 | 3.652141e-54 | -8.615850e-47 |
| Msa0268090 | Msa0809740 | 0.801784 | 7.647523e-49 | -8.615850e-47 |
| Msa0299200 | Msa0809740 | 0.806990 | 6.288864e-50 | -8.615850e-47 |
| Msa0335040 | Msa0809740 | 0.818602 | 1.799473e-52 | -8.615850e-47 |
| Msa0356890 | Msa0809740 | -0.817422 | 3.324750e-52 | -8.615850e-47 |
| Msa0492880 | Msa0809740 | 0.800057 | 1.723085e-48 | -8.615850e-47 |
| Msa0511250 | Msa0809740 | 0.820853 | 5.505886e-53 | -8.615850e-47 |
| Msa0517490 | Msa0809740 | 0.847835 | 8.993742e-60 | -8.615850e-47 |
| Msa0567020 | Msa0809740 | 0.840866 | 6.717443e-58 | -8.615850e-47 |
| Msa0589390 | Msa0809740 | 0.802194 | 6.298746e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0809740 | MtrunA17_Chr5g0425401 | 95.446 | 505 | 22 | 1 | 2 | 505 | 1 | 505 | 0.0 | 999 |
| Msa0809740 | MtrunA17_Chr5g0425361 | 81.065 | 507 | 94 | 2 | 1 | 505 | 1 | 507 | 0.0 | 873 |
| Msa0809740 | MtrunA17_Chr3g0079461 | 56.448 | 473 | 197 | 5 | 36 | 505 | 31 | 497 | 0.0 | 558 |
| Msa0809740 | MtrunA17_Chr3g0079451 | 55.907 | 474 | 198 | 6 | 36 | 505 | 7 | 473 | 0.0 | 556 |
| Msa0809740 | MtrunA17_Chr8g0382641 | 53.346 | 508 | 221 | 8 | 9 | 505 | 4 | 506 | 0.0 | 553 |
| Msa0809740 | MtrunA17_Chr3g0079431 | 53.783 | 489 | 214 | 8 | 18 | 505 | 12 | 489 | 0.0 | 542 |
| Msa0809740 | MtrunA17_Chr3g0079441 | 52.749 | 491 | 218 | 8 | 18 | 505 | 12 | 491 | 0.0 | 534 |
| Msa0809740 | MtrunA17_Chr3g0123661 | 48.101 | 474 | 242 | 2 | 34 | 505 | 34 | 505 | 5.12e-168 | 485 |
| Msa0809740 | MtrunA17_Chr5g0425351 | 60.526 | 228 | 48 | 3 | 220 | 447 | 19 | 204 | 2.43e-86 | 264 |
| Msa0809740 | MtrunA17_Chr5g0425301 | 76.316 | 76 | 18 | 0 | 377 | 452 | 2 | 77 | 1.52e-34 | 124 |
| Msa0809740 | MtrunA17_Chr5g0425291 | 69.841 | 63 | 18 | 1 | 218 | 280 | 19 | 80 | 3.88e-24 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 127 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAGAAACTTTCAGATTT+AGG | 0.092819 | 5_3:-36978984 | Msa0809740:CDS |
| GCCCATAACCATTTGTTATT+TGG | 0.116919 | 5_3:+36978478 | None:intergenic |
| ATCATATATCATCATAATTT+TGG | 0.132461 | 5_3:+36974554 | None:intergenic |
| TTTACATTCTTCTCAATAAA+TGG | 0.135585 | 5_3:+36974438 | None:intergenic |
| CAACATTTGGGTATGCTTAT+TGG | 0.162769 | 5_3:-36974651 | Msa0809740:CDS |
| CTAACCAAGAAGTCTTTATT+TGG | 0.163182 | 5_3:+36979382 | None:intergenic |
| AAAGCTCAATTAGATGTTTA+TGG | 0.183154 | 5_3:-36974679 | Msa0809740:CDS |
| CAAAGAAACTTTCAGATTTA+GGG | 0.194710 | 5_3:-36978983 | Msa0809740:CDS |
| CATTCCAAATAAAGACTTCT+TGG | 0.211873 | 5_3:-36979386 | Msa0809740:intron |
| CCCACTAGCTAATGGCCTTA+TGG | 0.221566 | 5_3:-36975287 | Msa0809740:CDS |
| TGTCACTTTCTTTAACAATA+TGG | 0.227895 | 5_3:+36978881 | None:intergenic |
| GTGATGGGGAGTTTAATTTA+TGG | 0.234603 | 5_3:+36979660 | None:intergenic |
| AAGATTAGTTGTATATATAT+TGG | 0.268160 | 5_3:+36979633 | None:intergenic |
| AACATTTGGGTATGCTTATT+GGG | 0.270817 | 5_3:-36974650 | Msa0809740:CDS |
| GTCCACTACTACAGCATCTT+TGG | 0.300446 | 5_3:-36975250 | Msa0809740:CDS |
| TTCAATCTAAACTTCTGATT+TGG | 0.308423 | 5_3:+36979472 | None:intergenic |
| CCACTAGCTAATGGCCTTAT+GGG | 0.309837 | 5_3:-36975286 | Msa0809740:CDS |
| TTCCAAATAACAAATGGTTA+TGG | 0.317163 | 5_3:-36978480 | Msa0809740:CDS |
| AATGATACCTTCATTATTTG+TGG | 0.328223 | 5_3:+36978444 | None:intergenic |
| GCAAACCGCTCAAGTGCTTC+TGG | 0.344807 | 5_3:-36979138 | Msa0809740:CDS |
| GTTGCTGAGTGGCAAGTTAA+AGG | 0.346227 | 5_3:-36974733 | Msa0809740:CDS |
| CTACAAGATGGTAGTACTTC+TGG | 0.347524 | 5_3:+36974271 | Msa0809730:CDS |
| GCAGCACCTGGCTCTCAAAA+TGG | 0.347913 | 5_3:-36975896 | Msa0809740:CDS |
| TCCAAATAACAAATGGTTAT+GGG | 0.378270 | 5_3:-36978479 | Msa0809740:CDS |
| TGATGTATCTGCAGAGAATA+TGG | 0.381230 | 5_3:-36975944 | Msa0809740:intron |
| ACTGTATCAACCTCAAAATA+TGG | 0.385596 | 5_3:-36979546 | Msa0809740:CDS |
| GTGGTGTTCTCAAATAGATT+AGG | 0.388703 | 5_3:-36975334 | Msa0809740:CDS |
| AAGCTCAATTAGATGTTTAT+GGG | 0.389186 | 5_3:-36974678 | Msa0809740:CDS |
| AAATATTTGTGTGCAGAGTC+TGG | 0.390828 | 5_3:-36979180 | Msa0809740:CDS |
| GTTGGTTGGTTACTGAAGGT+TGG | 0.402124 | 5_3:-36979432 | Msa0809740:CDS |
| TGCATTGTCTAGTGCTTGTA+AGG | 0.406879 | 5_3:+36976308 | None:intergenic |
| TTACATTCTTCTCAATAAAT+GGG | 0.406971 | 5_3:+36974439 | None:intergenic |
| GCACTCTTCTACTGTATTTG+TGG | 0.407650 | 5_3:-36975353 | Msa0809740:CDS |
| AAGAGACGGTTCACAAGAAT+GGG | 0.412119 | 5_3:-36975855 | Msa0809740:CDS |
| TTGTAATGACAATTGCTGAT+AGG | 0.413076 | 5_3:-36978515 | Msa0809740:CDS |
| CCGCTCAAGTGCTTCTGGTT+GGG | 0.413588 | 5_3:-36979133 | Msa0809740:CDS |
| GTTTATGGGAGAGCAACATT+TGG | 0.420478 | 5_3:-36974664 | Msa0809740:CDS |
| CAAGAGACGGTTCACAAGAA+TGG | 0.421390 | 5_3:-36975856 | Msa0809740:CDS |
| CAAGAAGTCTTTATTTGGAA+TGG | 0.424132 | 5_3:+36979387 | None:intergenic |
| AGAGTGAAGTACTTAAATAA+AGG | 0.430103 | 5_3:+36974511 | None:intergenic |
| ATGGAAAGTTTCAGAATCAA+TGG | 0.438369 | 5_3:+36978900 | None:intergenic |
| TTCTTCTCAATAAATGGGAT+TGG | 0.440479 | 5_3:+36974444 | None:intergenic |
| TTTATGGGAGAGCAACATTT+GGG | 0.445671 | 5_3:-36974663 | Msa0809740:CDS |
| GAATTCTTCCCACTAGCTAA+TGG | 0.452097 | 5_3:-36975295 | Msa0809740:CDS |
| GTTCGAATCAAAGCTTCAAA+TGG | 0.457248 | 5_3:-36978847 | Msa0809740:CDS |
| GAATTTGAATTCAAGGTGAA+TGG | 0.458034 | 5_3:-36974756 | Msa0809740:intron |
| AAACAATTTGTGGGGTTGGA+TGG | 0.470467 | 5_3:-36978952 | Msa0809740:CDS |
| AATGTATGCACCTTGCAGTT+AGG | 0.476338 | 5_3:+36975786 | None:intergenic |
| GTGTTTAACAAACAATTTGT+GGG | 0.480516 | 5_3:-36978961 | Msa0809740:CDS |
| GGTGTTTAACAAACAATTTG+TGG | 0.480723 | 5_3:-36978962 | Msa0809740:CDS |
| TTAGAATTCCAGTGGGTTGG+TGG | 0.482622 | 5_3:-36976374 | Msa0809740:CDS |
| TATATATATTGGATAGGTGA+TGG | 0.486347 | 5_3:+36979644 | None:intergenic |
| TAACAAACAATTTGTGGGGT+TGG | 0.491783 | 5_3:-36978956 | Msa0809740:CDS |
| ATGATTTCAAGTTCATAGCT+AGG | 0.494652 | 5_3:-36976413 | Msa0809740:CDS |
| GGTGAATTCCAAATAACAAA+TGG | 0.496193 | 5_3:-36978486 | Msa0809740:CDS |
| TTCAAGTTCATAGCTAGGAA+TGG | 0.498346 | 5_3:-36976408 | Msa0809740:CDS |
| ATTGATCTTCATGCAGCACC+TGG | 0.500988 | 5_3:-36975908 | Msa0809740:CDS |
| TTGAAAGCAGTTAACCTTGG+TGG | 0.501297 | 5_3:-36979454 | Msa0809740:CDS |
| AAACTAGTTCAAAACACGAT+TGG | 0.501421 | 5_3:-36974373 | Msa0809740:three_prime_UTR |
| ACCGCTCAAGTGCTTCTGGT+TGG | 0.501991 | 5_3:-36979134 | Msa0809740:CDS |
| TGATATATGATCATCGTGTA+AGG | 0.502843 | 5_3:-36974542 | Msa0809740:three_prime_UTR |
| GTTCATATTTCCAGGAACAT+TGG | 0.506200 | 5_3:-36976455 | Msa0809740:intron |
| ACAAACATTGGAGTCTAGAA+TGG | 0.506920 | 5_3:-36974612 | Msa0809740:CDS |
| GGTGGTTGGTTGGTTACTGA+AGG | 0.508219 | 5_3:-36979436 | Msa0809740:CDS |
| AGTGTTGCACCTGGTGATAG+AGG | 0.514143 | 5_3:+36975424 | None:intergenic |
| AATTTGAATTCAAGGTGAAT+GGG | 0.516762 | 5_3:-36974755 | Msa0809740:intron |
| CATCAATCACTGATCCCATA+AGG | 0.530630 | 5_3:+36975272 | None:intergenic |
| TGAAGCTTTGATTCGAACAC+GGG | 0.534321 | 5_3:+36978852 | None:intergenic |
| ACGTAGGGCCATGGTGGAGT+TGG | 0.534619 | 5_3:+36976339 | None:intergenic |
| CAGTTAGAATTCCAGTGGGT+TGG | 0.535426 | 5_3:-36976377 | Msa0809740:CDS |
| TTCAAATGGATACTTCATAC+AGG | 0.536866 | 5_3:-36978833 | Msa0809740:intron |
| GAAAGCTCCACAAATAATGA+AGG | 0.536911 | 5_3:-36978451 | Msa0809740:intron |
| CTAGAATGGATGATGAAGAA+TGG | 0.541024 | 5_3:-36974598 | Msa0809740:CDS |
| ATATATATTGGATAGGTGAT+GGG | 0.541335 | 5_3:+36979645 | None:intergenic |
| CTCCAAAGATGCTGTAGTAG+TGG | 0.542320 | 5_3:+36975248 | None:intergenic |
| CACTTGAGCGGTTTGCAACA+AGG | 0.542938 | 5_3:+36979145 | None:intergenic |
| AGTTAACCTTGGTGGTTGGT+TGG | 0.544377 | 5_3:-36979446 | Msa0809740:CDS |
| AGTGACTGCTGATGTATCAT+TGG | 0.547052 | 5_3:-36978571 | Msa0809740:CDS |
| AGAGGATTTGCAGGCAAAGA+CGG | 0.558168 | 5_3:-36978601 | Msa0809740:intron |
| TTGAACAAATACTACAAGGA+TGG | 0.560573 | 5_3:-36975394 | Msa0809740:CDS |
| AGTTCAACTGCATAAAGACT+TGG | 0.561869 | 5_3:+36975457 | None:intergenic |
| TGGGAAGAATTCTCTAGGCA+TGG | 0.562307 | 5_3:+36975306 | None:intergenic |
| TCAAGAACGTGAACAAACAT+TGG | 0.562797 | 5_3:-36974624 | Msa0809740:CDS |
| GTAGCTATCCACCAACCCAC+TGG | 0.563066 | 5_3:+36976366 | None:intergenic |
| GGAATGGCATCAAAGAGTGA+AGG | 0.566127 | 5_3:+36979403 | None:intergenic |
| GAACCTCCCACGTAGGGCCA+TGG | 0.568301 | 5_3:+36976330 | None:intergenic |
| TTTGCAGGCAAAGACGGAAG+AGG | 0.569718 | 5_3:-36978595 | Msa0809740:intron |
| TAGTTGTATATATATTGGAT+AGG | 0.571021 | 5_3:+36979638 | None:intergenic |
| TGAGCGGTTTGCAACAAGGA+TGG | 0.571791 | 5_3:+36979149 | None:intergenic |
| GCTAGTGGGAAGAATTCTCT+AGG | 0.574726 | 5_3:+36975301 | None:intergenic |
| CTAAATGAGCCTCTATCACC+AGG | 0.576495 | 5_3:-36975433 | Msa0809740:CDS |
| GTGAAATTGGCACTACAAGA+TGG | 0.577308 | 5_3:+36974259 | Msa0809730:CDS |
| AGATTGAAAGCAGTTAACCT+TGG | 0.578195 | 5_3:-36979457 | Msa0809740:CDS |
| CTGATTTGGTCTCCCATGTG+TGG | 0.583392 | 5_3:+36979486 | None:intergenic |
| TGTAAGGAACCTCCCACGTA+GGG | 0.583435 | 5_3:+36976324 | None:intergenic |
| CCATAAGGCCATTAGCTAGT+GGG | 0.583955 | 5_3:+36975287 | None:intergenic |
| CCCATAAGGCCATTAGCTAG+TGG | 0.585533 | 5_3:+36975286 | None:intergenic |
| ATGTATCATTGGTCAACGGA+TGG | 0.585711 | 5_3:-36978560 | Msa0809740:CDS |
| TATTTACAATAATCGCTCAT+CGG | 0.585988 | 5_3:-36975185 | Msa0809740:CDS |
| CCTCCCACGTAGGGCCATGG+TGG | 0.588737 | 5_3:+36976333 | None:intergenic |
| CCCAACCAGAAGCACTTGAG+CGG | 0.589670 | 5_3:+36979133 | None:intergenic |
| GTTATGCTTTCTACCACACA+TGG | 0.592026 | 5_3:-36979499 | Msa0809740:CDS |
| TTGTGTGCAGAGTCTGGAGG+AGG | 0.597579 | 5_3:-36979174 | Msa0809740:CDS |
| AGCTTTGATTCGAACACGGG+TGG | 0.598897 | 5_3:+36978855 | None:intergenic |
| TTGAAGCTTTGATTCGAACA+CGG | 0.599020 | 5_3:+36978851 | None:intergenic |
| AACTCCACCATGGCCCTACG+TGG | 0.599934 | 5_3:-36976337 | Msa0809740:CDS |
| CCACCATGGCCCTACGTGGG+AGG | 0.603970 | 5_3:-36976333 | Msa0809740:CDS |
| AAATGCAGTTAGAATTCCAG+TGG | 0.605969 | 5_3:-36976382 | Msa0809740:CDS |
| GAGCATAGCTCTTCAAGAGA+CGG | 0.613874 | 5_3:-36975869 | Msa0809740:CDS |
| TATATATTGGATAGGTGATG+GGG | 0.615787 | 5_3:+36979646 | None:intergenic |
| AAACTTTCTAGTGTTGCACC+TGG | 0.623140 | 5_3:+36975415 | None:intergenic |
| TTGTAAGGAACCTCCCACGT+AGG | 0.623751 | 5_3:+36976323 | None:intergenic |
| TGTTTAACAAACAATTTGTG+GGG | 0.625604 | 5_3:-36978960 | Msa0809740:CDS |
| AAGCAGTTAACCTTGGTGGT+TGG | 0.646493 | 5_3:-36979450 | Msa0809740:CDS |
| ACAATTGCTGATAGGATGCA+AGG | 0.648620 | 5_3:-36978507 | Msa0809740:CDS |
| AATGCAGTTAGAATTCCAGT+GGG | 0.652546 | 5_3:-36976381 | Msa0809740:CDS |
| TCATTGACTTCCTAACTGCA+AGG | 0.656279 | 5_3:-36975796 | Msa0809740:intron |
| AAGTTTGAACAAATACTACA+AGG | 0.657848 | 5_3:-36975398 | Msa0809740:CDS |
| ACTCCACCATGGCCCTACGT+GGG | 0.663058 | 5_3:-36976336 | Msa0809740:CDS |
| TTATGCTTTCTACCACACAT+GGG | 0.677451 | 5_3:-36979498 | Msa0809740:CDS |
| GAAGAATTCTCTAGGCATGG+AGG | 0.695443 | 5_3:+36975309 | None:intergenic |
| GCTGATGTATCATTGGTCAA+CGG | 0.707292 | 5_3:-36978564 | Msa0809740:CDS |
| CTACTGATCCAACTCCACCA+TGG | 0.707550 | 5_3:-36976347 | Msa0809740:CDS |
| CAGTAACCAACCAACCACCA+AGG | 0.710651 | 5_3:+36979440 | None:intergenic |
| AGAGACGGTTCACAAGAATG+GGG | 0.726094 | 5_3:-36975854 | Msa0809740:CDS |
| AAGGTGAATGGGTTGCTGAG+TGG | 0.733038 | 5_3:-36974744 | Msa0809740:CDS |
| TATTTGTGTGCAGAGTCTGG+AGG | 0.745186 | 5_3:-36979177 | Msa0809740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTCTATATATTTTTTAT+AGG | - | chr5_3:36974714-36974733 | Msa0809740:CDS | 10.0% |
| !!! | TTTCTTTATAATTTTTTTAG+AGG | - | chr5_3:36975291-36975310 | Msa0809740:CDS | 10.0% |
| !! | TTAGAATGATATAAAATTTA+GGG | + | chr5_3:36976144-36976163 | None:intergenic | 10.0% |
| !! | TTAACAAAATGAAATATAAT+TGG | - | chr5_3:36976470-36976489 | Msa0809740:intron | 10.0% |
| !! | TAACAAAATGAAATATAATT+GGG | - | chr5_3:36976471-36976490 | Msa0809740:intron | 10.0% |
| !!! | AAACAACAATATTTTTTTTT+TGG | - | chr5_3:36976524-36976543 | Msa0809740:intron | 10.0% |
| !!! | AACAACAATATTTTTTTTTT+GGG | - | chr5_3:36976525-36976544 | Msa0809740:intron | 10.0% |
| !! | ATATGATAAAAAAAATTGAA+TGG | + | chr5_3:36976658-36976677 | None:intergenic | 10.0% |
| !!! | ATACTTTTTTTTTTTTTGAA+GGG | + | chr5_3:36977029-36977048 | None:intergenic | 10.0% |
| !!! | TATACTTTTTTTTTTTTTGA+AGG | + | chr5_3:36977030-36977049 | None:intergenic | 10.0% |
| !! | TTATTCAATAATTATTATTG+AGG | + | chr5_3:36977285-36977304 | None:intergenic | 10.0% |
| !! | AATAATTATTACTAATATCA+TGG | + | chr5_3:36978410-36978429 | None:intergenic | 10.0% |
| !! | TATTTAATAAACAAATAACA+TGG | + | chr5_3:36978433-36978452 | None:intergenic | 10.0% |
| !!! | AAGATTAGTTGTATATATAT+TGG | + | chr5_3:36974325-36974344 | None:intergenic | 15.0% |
| !!! | TCTATATATTTTTTATAGGA+TGG | - | chr5_3:36974718-36974737 | Msa0809740:CDS | 15.0% |
| !! | TAAAAATATAGTATATACTG+CGG | + | chr5_3:36975158-36975177 | None:intergenic | 15.0% |
| !! | TATTATTGTACTATAAAAAG+AGG | - | chr5_3:36975322-36975341 | Msa0809740:CDS | 15.0% |
| !! | GTTAGAATGATATAAAATTT+AGG | + | chr5_3:36976145-36976164 | None:intergenic | 15.0% |
| !!! | AAATTTTATATCATTCTAAC+TGG | - | chr5_3:36976145-36976164 | Msa0809740:intron | 15.0% |
| !!! | TGTTAGAATATTTTTGTTTT+TGG | - | chr5_3:36976333-36976352 | Msa0809740:CDS | 15.0% |
| !!! | ACAACAATATTTTTTTTTTG+GGG | - | chr5_3:36976526-36976545 | Msa0809740:intron | 15.0% |
| !!! | AATCTTAATAATTGATAATG+TGG | + | chr5_3:36976867-36976886 | None:intergenic | 15.0% |
| !! | AACACGAAAAAAAATAATTT+GGG | + | chr5_3:36977442-36977461 | None:intergenic | 15.0% |
| !! | AAACACGAAAAAAAATAATT+TGG | + | chr5_3:36977443-36977462 | None:intergenic | 15.0% |
| !! | AAAACGATTTATATTAAGAA+TGG | + | chr5_3:36978860-36978879 | None:intergenic | 15.0% |
| !!! | ATCATATATCATCATAATTT+TGG | + | chr5_3:36979404-36979423 | None:intergenic | 15.0% |
| !! | TAGTTGTATATATATTGGAT+AGG | + | chr5_3:36974320-36974339 | None:intergenic | 20.0% |
| !! | TTTAAATCAAAAAAGTGAAG+AGG | - | chr5_3:36974351-36974370 | Msa0809740:three_prime_UTR | 20.0% |
| !!! | ATATTTTTTATAGGATGGAA+CGG | - | chr5_3:36974723-36974742 | Msa0809740:CDS | 20.0% |
| !! | ACACAAAATAATCAAATATG+AGG | + | chr5_3:36974931-36974950 | None:intergenic | 20.0% |
| !!! | CAAATATTGAAATTTTGTGT+AGG | + | chr5_3:36975227-36975246 | None:intergenic | 20.0% |
| !! | TTGTCATTACAAAAATTGTT+GGG | + | chr5_3:36975432-36975451 | None:intergenic | 20.0% |
| !! | ATTGTCATTACAAAAATTGT+TGG | + | chr5_3:36975433-36975452 | None:intergenic | 20.0% |
| !!! | ACAACTTTGATTTTTATCAT+CGG | + | chr5_3:36976053-36976072 | None:intergenic | 20.0% |
| !!! | TAATAAGCTTTTTTGTTTGA+AGG | - | chr5_3:36976086-36976105 | Msa0809740:intron | 20.0% |
| !!! | TGAAAGTGTTAATATTTCAT+TGG | + | chr5_3:36976198-36976217 | None:intergenic | 20.0% |
| !! | ATGAAATATAATTGGGAAAA+AGG | - | chr5_3:36976478-36976497 | Msa0809740:intron | 20.0% |
| !! | TGAAATATAATTGGGAAAAA+GGG | - | chr5_3:36976479-36976498 | Msa0809740:intron | 20.0% |
| !!! | TATGTATAAGATTGATGATA+GGG | + | chr5_3:36976632-36976651 | None:intergenic | 20.0% |
| !!! | ATATGTATAAGATTGATGAT+AGG | + | chr5_3:36976633-36976652 | None:intergenic | 20.0% |
| !!! | ACTCTTAATAATTGATAATG+TGG | + | chr5_3:36976762-36976781 | None:intergenic | 20.0% |
| !! | AAAAAACAGAGAAAATAATG+AGG | - | chr5_3:36976823-36976842 | Msa0809740:intron | 20.0% |
| !! | CTTAATAAGTGTATAAAAAG+TGG | + | chr5_3:36976978-36976997 | None:intergenic | 20.0% |
| !!! | CACTTTTTATACACTTATTA+AGG | - | chr5_3:36976976-36976995 | Msa0809740:intron | 20.0% |
| !! | ATAAAAAAGACTGTCTTAAT+TGG | + | chr5_3:36977109-36977128 | None:intergenic | 20.0% |
| !!! | ACAGTCTTTTTTATATTAGT+TGG | - | chr5_3:36977115-36977134 | Msa0809740:intron | 20.0% |
| !!! | CAGTCTTTTTTATATTAGTT+GGG | - | chr5_3:36977116-36977135 | Msa0809740:intron | 20.0% |
| !!! | TTTTTTATATTAGTTGGGTA+GGG | - | chr5_3:36977121-36977140 | Msa0809740:intron | 20.0% |
| !! | CATATTAAGGTAATCTTATT+GGG | - | chr5_3:36977150-36977169 | Msa0809740:intron | 20.0% |
| !!! | ATTTTTTTTCGTGTTTTCTA+TGG | - | chr5_3:36977447-36977466 | Msa0809740:intron | 20.0% |
| !! | AAAATGTTAGTGACAAAAAA+TGG | - | chr5_3:36977726-36977745 | Msa0809740:intron | 20.0% |
| !! | ATTGTGATTTACAGTAAAAA+CGG | + | chr5_3:36977942-36977961 | None:intergenic | 20.0% |
| !! | TTTAAATGTCACTGATAATA+GGG | - | chr5_3:36977981-36978000 | Msa0809740:intron | 20.0% |
| !!! | TCATGGTCAATTATTTTTTA+AGG | + | chr5_3:36978993-36979012 | None:intergenic | 20.0% |
| !!! | AGATATATTTTCTCTCAAAA+AGG | + | chr5_3:36979035-36979054 | None:intergenic | 20.0% |
| !! | AAAAATGACTACAAAAGATT+TGG | - | chr5_3:36979252-36979271 | Msa0809740:intron | 20.0% |
| !! | TTACATTCTTCTCAATAAAT+GGG | + | chr5_3:36979519-36979538 | None:intergenic | 20.0% |
| !! | TTTACATTCTTCTCAATAAA+TGG | + | chr5_3:36979520-36979539 | None:intergenic | 20.0% |
| ! | ATATATATTGGATAGGTGAT+GGG | + | chr5_3:36974313-36974332 | None:intergenic | 25.0% |
| ! | TATATATATTGGATAGGTGA+TGG | + | chr5_3:36974314-36974333 | None:intergenic | 25.0% |
| !! | AGTTAAGAAACCATATTTTG+AGG | + | chr5_3:36974422-36974441 | None:intergenic | 25.0% |
| ! | TTCAATCTAAACTTCTGATT+TGG | + | chr5_3:36974486-36974505 | None:intergenic | 25.0% |
| !!! | TATTTTTTATAGGATGGAAC+GGG | - | chr5_3:36974724-36974743 | Msa0809740:CDS | 25.0% |
| ! | ACAAAGAAACTTTCAGATTT+AGG | - | chr5_3:36974971-36974990 | Msa0809740:intron | 25.0% |
| ! | CAAAGAAACTTTCAGATTTA+GGG | - | chr5_3:36974972-36974991 | Msa0809740:intron | 25.0% |
| ! | GTGTTTAACAAACAATTTGT+GGG | - | chr5_3:36974994-36975013 | Msa0809740:intron | 25.0% |
| ! | TGTTTAACAAACAATTTGTG+GGG | - | chr5_3:36974995-36975014 | Msa0809740:intron | 25.0% |
| !!! | TGTCACTTTCTTTAACAATA+TGG | + | chr5_3:36975077-36975096 | None:intergenic | 25.0% |
| ! | TTTCTTTAAATAGTGTCACA+AGG | - | chr5_3:36975247-36975266 | Msa0809740:CDS | 25.0% |
| ! | TTCTTTAAATAGTGTCACAA+GGG | - | chr5_3:36975248-36975267 | Msa0809740:CDS | 25.0% |
| ! | ACTATAAAAAGAGGAATTCA+TGG | - | chr5_3:36975331-36975350 | Msa0809740:CDS | 25.0% |
| ! | TTCCAAATAACAAATGGTTA+TGG | - | chr5_3:36975475-36975494 | Msa0809740:intron | 25.0% |
| ! | TCCAAATAACAAATGGTTAT+GGG | - | chr5_3:36975476-36975495 | Msa0809740:intron | 25.0% |
| ! | AATGATACCTTCATTATTTG+TGG | + | chr5_3:36975514-36975533 | None:intergenic | 25.0% |
| ! | CGTTGTAAACTAAAGTTATT+AGG | - | chr5_3:36975539-36975558 | Msa0809740:intron | 25.0% |
| !!! | AGAACTCATACATTTTAACT+AGG | + | chr5_3:36975596-36975615 | None:intergenic | 25.0% |
| !! | TTTTTGTCAAGTAGTTTAGT+GGG | + | chr5_3:36975620-36975639 | None:intergenic | 25.0% |
| !!! | TTTTTTGTCAAGTAGTTTAG+TGG | + | chr5_3:36975621-36975640 | None:intergenic | 25.0% |
| !!! | TTTAGAGTGATCTTTTAACT+AGG | + | chr5_3:36975654-36975673 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCAATTAGCCTAG+TGG | + | chr5_3:36975915-36975934 | None:intergenic | 25.0% |
| ! | AATTCATACAAAATCTAGCT+AGG | - | chr5_3:36975994-36976013 | Msa0809740:intron | 25.0% |
| ! | CATAACTAAAATACTGAATG+AGG | - | chr5_3:36976019-36976038 | Msa0809740:intron | 25.0% |
| ! | TTGGAATCATATGATGTAAT+GGG | + | chr5_3:36976179-36976198 | None:intergenic | 25.0% |
| ! | ATTGGAATCATATGATGTAA+TGG | + | chr5_3:36976180-36976199 | None:intergenic | 25.0% |
| ! | CATAATATATGTAAGAGTCA+GGG | + | chr5_3:36976400-36976419 | None:intergenic | 25.0% |
| ! | ACATAATATATGTAAGAGTC+AGG | + | chr5_3:36976401-36976420 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTGAAGGGAGAAA+GGG | + | chr5_3:36977021-36977040 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGAAGGGAGAA+AGG | + | chr5_3:36977022-36977041 | None:intergenic | 25.0% |
| !!! | CTTTTTTATATTAGTTGGGT+AGG | - | chr5_3:36977120-36977139 | Msa0809740:intron | 25.0% |
| ! | GCATATTAAGGTAATCTTAT+TGG | - | chr5_3:36977149-36977168 | Msa0809740:intron | 25.0% |
| ! | CATCAACTAACAAAAAAAGT+TGG | + | chr5_3:36977189-36977208 | None:intergenic | 25.0% |
| !!! | CAACTTTTTTTGTTAGTTGA+TGG | - | chr5_3:36977187-36977206 | Msa0809740:intron | 25.0% |
| ! | TTAAATATCCAGTAAGTCAA+TGG | + | chr5_3:36977224-36977243 | None:intergenic | 25.0% |
| ! | AATAATTTGGGCTTAATTCT+TGG | + | chr5_3:36977430-36977449 | None:intergenic | 25.0% |
| ! | TTGTAAATGTAAACGTTTCA+CGG | - | chr5_3:36977476-36977495 | Msa0809740:intron | 25.0% |
| !!! | AAAGAATCTCATTTAGTTTG+TGG | + | chr5_3:36977693-36977712 | None:intergenic | 25.0% |
| ! | TTAGACGAAATCAATGTATT+TGG | + | chr5_3:36977795-36977814 | None:intergenic | 25.0% |
| ! | ATAACCAAATGCAATTGATA+TGG | - | chr5_3:36977872-36977891 | Msa0809740:intron | 25.0% |
| ! | CTTTAAATGTCACTGATAAT+AGG | - | chr5_3:36977980-36977999 | Msa0809740:intron | 25.0% |
| ! | TAATGTCATATTATGAAGCA+CGG | + | chr5_3:36978373-36978392 | None:intergenic | 25.0% |
| !! | TCTACATTTTTATGTGTCAT+AGG | - | chr5_3:36978463-36978482 | Msa0809740:CDS | 25.0% |
| ! | AAGTTTGAACAAATACTACA+AGG | - | chr5_3:36978557-36978576 | Msa0809740:CDS | 25.0% |
| ! | TATTTACAATAATCGCTCAT+CGG | - | chr5_3:36978770-36978789 | Msa0809740:intron | 25.0% |
| !! | AATTTTGTTACAACCTCAAA+TGG | - | chr5_3:36978798-36978817 | Msa0809740:intron | 25.0% |
| ! | ACAATGTGAATTTGAATTCA+AGG | - | chr5_3:36979192-36979211 | Msa0809740:CDS | 25.0% |
| ! | AATTTGAATTCAAGGTGAAT+GGG | - | chr5_3:36979200-36979219 | Msa0809740:CDS | 25.0% |
| ! | AAAGCTCAATTAGATGTTTA+TGG | - | chr5_3:36979276-36979295 | Msa0809740:intron | 25.0% |
| ! | AAGCTCAATTAGATGTTTAT+GGG | - | chr5_3:36979277-36979296 | Msa0809740:intron | 25.0% |
| !! | AGAGTGAAGTACTTAAATAA+AGG | + | chr5_3:36979447-36979466 | None:intergenic | 25.0% |
| TATATATTGGATAGGTGATG+GGG | + | chr5_3:36974312-36974331 | None:intergenic | 30.0% | |
| ACTGTATCAACCTCAAAATA+TGG | - | chr5_3:36974409-36974428 | Msa0809740:three_prime_UTR | 30.0% | |
| ! | CAAGAAGTCTTTATTTGGAA+TGG | + | chr5_3:36974571-36974590 | None:intergenic | 30.0% |
| CATTCCAAATAAAGACTTCT+TGG | - | chr5_3:36974569-36974588 | Msa0809740:exon | 30.0% | |
| CTAACCAAGAAGTCTTTATT+TGG | + | chr5_3:36974576-36974595 | None:intergenic | 30.0% | |
| ! | TATTTTGTGTATTGCAGTTG+TGG | - | chr5_3:36974941-36974960 | Msa0809740:intron | 30.0% |
| GGTGTTTAACAAACAATTTG+TGG | - | chr5_3:36974993-36975012 | Msa0809740:intron | 30.0% | |
| ATGGAAAGTTTCAGAATCAA+TGG | + | chr5_3:36975058-36975077 | None:intergenic | 30.0% | |
| TTCAAATGGATACTTCATAC+AGG | - | chr5_3:36975122-36975141 | Msa0809740:intron | 30.0% | |
| ! | CCGATCTTATTTATAACGAA+GGG | + | chr5_3:36975187-36975206 | None:intergenic | 30.0% |
| CCCTTCGTTATAAATAAGAT+CGG | - | chr5_3:36975184-36975203 | Msa0809740:CDS | 30.0% | |
| ! | TCCGATCTTATTTATAACGA+AGG | + | chr5_3:36975188-36975207 | None:intergenic | 30.0% |
| TTGTAATGACAATTGCTGAT+AGG | - | chr5_3:36975440-36975459 | Msa0809740:CDS | 30.0% | |
| GGTGAATTCCAAATAACAAA+TGG | - | chr5_3:36975469-36975488 | Msa0809740:CDS | 30.0% | |
| TATAACTCCACATCTATACA+AGG | - | chr5_3:36975732-36975751 | Msa0809740:intron | 30.0% | |
| ATTATTATATGCTTGCCACT+AGG | - | chr5_3:36975897-36975916 | Msa0809740:CDS | 30.0% | |
| AAAACTATACAACTAGTGCT+AGG | - | chr5_3:36975938-36975957 | Msa0809740:intron | 30.0% | |
| GAATAAGTGCTTGAGAATAT+AGG | + | chr5_3:36976575-36976594 | None:intergenic | 30.0% | |
| TTAATCTTGACCATTGTCAA+TGG | - | chr5_3:36976892-36976911 | Msa0809740:intron | 30.0% | |
| AAAGGGAAAATATACTTGGT+GGG | + | chr5_3:36977004-36977023 | None:intergenic | 30.0% | |
| GCTAGTTGCGATAATAAAAA+GGG | + | chr5_3:36977057-36977076 | None:intergenic | 30.0% | |
| TGCTAGTTGCGATAATAAAA+AGG | + | chr5_3:36977058-36977077 | None:intergenic | 30.0% | |
| CAACTAACAAAAAAAGTTGG+TGG | + | chr5_3:36977186-36977205 | None:intergenic | 30.0% | |
| TAAACTGTAGAGATACTTCT+GGG | + | chr5_3:36977375-36977394 | None:intergenic | 30.0% | |
| TGTAAATGTAAACGTTTCAC+GGG | - | chr5_3:36977477-36977496 | Msa0809740:intron | 30.0% | |
| !! | ATGATTTCAAGTTCATAGCT+AGG | - | chr5_3:36977542-36977561 | Msa0809740:intron | 30.0% |
| ! | ACTAGACAATGCATTTTTGT+GGG | - | chr5_3:36977657-36977676 | Msa0809740:intron | 30.0% |
| ! | TGGTGATGTAAATGATTCAA+AGG | + | chr5_3:36977775-36977794 | None:intergenic | 30.0% |
| ACAACCATATCAATTGCATT+TGG | + | chr5_3:36977879-36977898 | None:intergenic | 30.0% | |
| TACATATAAGCAATGAAGCA+CGG | - | chr5_3:36978191-36978210 | Msa0809740:intron | 30.0% | |
| TCTCAAATTATTATCCGTGT+TGG | - | chr5_3:36978306-36978325 | Msa0809740:intron | 30.0% | |
| TTGAACAAATACTACAAGGA+TGG | - | chr5_3:36978561-36978580 | Msa0809740:CDS | 30.0% | |
| AAAAATAAGAGGACCATTTG+AGG | + | chr5_3:36978814-36978833 | None:intergenic | 30.0% | |
| !!! | AATGGTCCTCTTATTTTTGT+CGG | - | chr5_3:36978816-36978835 | Msa0809740:intron | 30.0% |
| TACTAACCGACAAAAATAAG+AGG | + | chr5_3:36978825-36978844 | None:intergenic | 30.0% | |
| ! | TCGTTTTACTCACCATTTTA+TGG | - | chr5_3:36978873-36978892 | Msa0809740:CDS | 30.0% |
| TTGGAAATGACACCATAAAA+TGG | + | chr5_3:36978888-36978907 | None:intergenic | 30.0% | |
| AAGTCATAGAATCAAACTCA+TGG | + | chr5_3:36979010-36979029 | None:intergenic | 30.0% | |
| CTATGAGACTAATCTTCAAA+TGG | + | chr5_3:36979086-36979105 | None:intergenic | 30.0% | |
| GAATTTGAATTCAAGGTGAA+TGG | - | chr5_3:36979199-36979218 | Msa0809740:CDS | 30.0% | |
| AACATTTGGGTATGCTTATT+GGG | - | chr5_3:36979305-36979324 | Msa0809740:intron | 30.0% | |
| TGATATATGATCATCGTGTA+AGG | - | chr5_3:36979413-36979432 | Msa0809740:CDS | 30.0% | |
| TTCTTCTCAATAAATGGGAT+TGG | + | chr5_3:36979514-36979533 | None:intergenic | 30.0% | |
| AAACTAGTTCAAAACACGAT+TGG | - | chr5_3:36979582-36979601 | Msa0809740:five_prime_UTR | 30.0% | |
| ! | GTGATGGGGAGTTTAATTTA+TGG | + | chr5_3:36974298-36974317 | Msa0809730:CDS | 35.0% |
| TTATGCTTTCTACCACACAT+GGG | - | chr5_3:36974457-36974476 | Msa0809740:three_prime_UTR | 35.0% | |
| AGATTGAAAGCAGTTAACCT+TGG | - | chr5_3:36974498-36974517 | Msa0809740:three_prime_UTR | 35.0% | |
| AAATATTTGTGTGCAGAGTC+TGG | - | chr5_3:36974775-36974794 | Msa0809740:intron | 35.0% | |
| TAACAAACAATTTGTGGGGT+TGG | - | chr5_3:36974999-36975018 | Msa0809740:intron | 35.0% | |
| ! | TTGAAGCTTTGATTCGAACA+CGG | + | chr5_3:36975107-36975126 | None:intergenic | 35.0% |
| GTTCGAATCAAAGCTTCAAA+TGG | - | chr5_3:36975108-36975127 | Msa0809740:intron | 35.0% | |
| AAAAAGAGGAATTCATGGAG+AGG | - | chr5_3:36975336-36975355 | Msa0809740:CDS | 35.0% | |
| !! | GCCCATAACCATTTGTTATT+TGG | + | chr5_3:36975480-36975499 | None:intergenic | 35.0% |
| GAAAGCTCCACAAATAATGA+AGG | - | chr5_3:36975504-36975523 | Msa0809740:intron | 35.0% | |
| ! | TAGGAGTATAACTTTACGCT+TGG | - | chr5_3:36975558-36975577 | Msa0809740:intron | 35.0% |
| ATAGATGTGGAGTTATACGT+TGG | + | chr5_3:36975729-36975748 | None:intergenic | 35.0% | |
| !! | TTTTTGGTCAAATAGCCTAG+TGG | - | chr5_3:36976349-36976368 | Msa0809740:CDS | 35.0% |
| AATAGCCTAGTGGTTAAAAC+TGG | - | chr5_3:36976359-36976378 | Msa0809740:CDS | 35.0% | |
| TACCAACTGAGTTAAGTTCA+TGG | - | chr5_3:36976429-36976448 | Msa0809740:CDS | 35.0% | |
| TTCCATGAACTTAACTCAGT+TGG | + | chr5_3:36976434-36976453 | None:intergenic | 35.0% | |
| ATTGGGAAAAAGGGAATATG+TGG | - | chr5_3:36976488-36976507 | Msa0809740:intron | 35.0% | |
| TTAATCTTGACCATCGTCAT+TGG | - | chr5_3:36976787-36976806 | Msa0809740:intron | 35.0% | |
| GAAAGGGAAAATATACTTGG+TGG | + | chr5_3:36977005-36977024 | None:intergenic | 35.0% | |
| GGAGAAAGGGAAAATATACT+TGG | + | chr5_3:36977008-36977027 | None:intergenic | 35.0% | |
| AGGTAATCTTATTGGGACAA+TGG | - | chr5_3:36977157-36977176 | Msa0809740:intron | 35.0% | |
| CTAAACTGTAGAGATACTTC+TGG | + | chr5_3:36977376-36977395 | None:intergenic | 35.0% | |
| GTAAATGTAAACGTTTCACG+GGG | - | chr5_3:36977478-36977497 | Msa0809740:intron | 35.0% | |
| GTTCATATTTCCAGGAACAT+TGG | - | chr5_3:36977500-36977519 | Msa0809740:intron | 35.0% | |
| ! | TTCAAGTTCATAGCTAGGAA+TGG | - | chr5_3:36977547-36977566 | Msa0809740:intron | 35.0% |
| AAATGCAGTTAGAATTCCAG+TGG | - | chr5_3:36977573-36977592 | Msa0809740:intron | 35.0% | |
| AATGCAGTTAGAATTCCAGT+GGG | - | chr5_3:36977574-36977593 | Msa0809740:intron | 35.0% | |
| ! | CACTAGACAATGCATTTTTG+TGG | - | chr5_3:36977656-36977675 | Msa0809740:intron | 35.0% |
| TGCAATTGATATGGTTGTCA+TGG | - | chr5_3:36977881-36977900 | Msa0809740:intron | 35.0% | |
| TGATGTATCTGCAGAGAATA+TGG | - | chr5_3:36978011-36978030 | Msa0809740:intron | 35.0% | |
| TGGAACATCTCTATTCTGAA+AGG | + | chr5_3:36978220-36978239 | None:intergenic | 35.0% | |
| AGTTCAACTGCATAAAGACT+TGG | + | chr5_3:36978501-36978520 | None:intergenic | 35.0% | |
| GTGGTGTTCTCAAATAGATT+AGG | - | chr5_3:36978621-36978640 | Msa0809740:intron | 35.0% | |
| TTAGTCTCATAGAGAACCTT+AGG | - | chr5_3:36979094-36979113 | Msa0809740:intron | 35.0% | |
| TAGTCTCATAGAGAACCTTA+GGG | - | chr5_3:36979095-36979114 | Msa0809740:intron | 35.0% | |
| TTTATGGGAGAGCAACATTT+GGG | - | chr5_3:36979292-36979311 | Msa0809740:intron | 35.0% | |
| CAACATTTGGGTATGCTTAT+TGG | - | chr5_3:36979304-36979323 | Msa0809740:intron | 35.0% | |
| TCAAGAACGTGAACAAACAT+TGG | - | chr5_3:36979331-36979350 | Msa0809740:intron | 35.0% | |
| ACAAACATTGGAGTCTAGAA+TGG | - | chr5_3:36979343-36979362 | Msa0809740:intron | 35.0% | |
| CTAGAATGGATGATGAAGAA+TGG | - | chr5_3:36979357-36979376 | Msa0809740:intron | 35.0% | |
| GTTATGCTTTCTACCACACA+TGG | - | chr5_3:36974456-36974475 | Msa0809740:three_prime_UTR | 40.0% | |
| TTGAAAGCAGTTAACCTTGG+TGG | - | chr5_3:36974501-36974520 | Msa0809740:three_prime_UTR | 40.0% | |
| AAACAATTTGTGGGGTTGGA+TGG | - | chr5_3:36975003-36975022 | Msa0809740:intron | 40.0% | |
| ! | TGAAGCTTTGATTCGAACAC+GGG | + | chr5_3:36975106-36975125 | None:intergenic | 40.0% |
| AATTCATGGAGAGGATTTGC+AGG | - | chr5_3:36975345-36975364 | Msa0809740:CDS | 40.0% | |
| AGTGACTGCTGATGTATCAT+TGG | - | chr5_3:36975384-36975403 | Msa0809740:CDS | 40.0% | |
| GCTGATGTATCATTGGTCAA+CGG | - | chr5_3:36975391-36975410 | Msa0809740:CDS | 40.0% | |
| ATGTATCATTGGTCAACGGA+TGG | - | chr5_3:36975395-36975414 | Msa0809740:CDS | 40.0% | |
| ACAATTGCTGATAGGATGCA+AGG | - | chr5_3:36975448-36975467 | Msa0809740:CDS | 40.0% | |
| CAACACTCCTTGTATAGATG+TGG | + | chr5_3:36975742-36975761 | None:intergenic | 40.0% | |
| TAGTGGTTAAAACTGGTGTG+CGG | - | chr5_3:36976366-36976385 | Msa0809740:CDS | 40.0% | |
| CTTCACGTTACCATTGACAA+TGG | + | chr5_3:36976905-36976924 | None:intergenic | 40.0% | |
| ATATTAGTTGGGTAGGGCAA+TGG | - | chr5_3:36977127-36977146 | Msa0809740:intron | 40.0% | |
| ! | GAGATACTTCTGGGAAACTA+TGG | + | chr5_3:36977366-36977385 | None:intergenic | 40.0% |
| TAAAACTGCTCCAATGTTCC+TGG | + | chr5_3:36977513-36977532 | None:intergenic | 40.0% | |
| TGCATTGTCTAGTGCTTGTA+AGG | + | chr5_3:36977650-36977669 | None:intergenic | 40.0% | |
| AAGAGACGGTTCACAAGAAT+GGG | - | chr5_3:36978100-36978119 | Msa0809740:intron | 40.0% | |
| !! | TCATTGACTTCCTAACTGCA+AGG | - | chr5_3:36978159-36978178 | Msa0809740:intron | 40.0% |
| AATGTATGCACCTTGCAGTT+AGG | + | chr5_3:36978172-36978191 | None:intergenic | 40.0% | |
| TATAGATGTCGTGTCAGTGA+TGG | + | chr5_3:36978264-36978283 | None:intergenic | 40.0% | |
| ! | AAACTTTCTAGTGTTGCACC+TGG | + | chr5_3:36978543-36978562 | None:intergenic | 40.0% |
| GCACTCTTCTACTGTATTTG+TGG | - | chr5_3:36978602-36978621 | Msa0809740:intron | 40.0% | |
| GAATTCTTCCCACTAGCTAA+TGG | - | chr5_3:36978660-36978679 | Msa0809740:intron | 40.0% | |
| CATCAATCACTGATCCCATA+AGG | + | chr5_3:36978686-36978705 | None:intergenic | 40.0% | |
| TTTATCCAACATGCACCCTA+AGG | + | chr5_3:36979113-36979132 | None:intergenic | 40.0% | |
| GTTTATGGGAGAGCAACATT+TGG | - | chr5_3:36979291-36979310 | Msa0809740:intron | 40.0% | |
| CTACAAGATGGTAGTACTTC+TGG | + | chr5_3:36979687-36979706 | None:intergenic | 40.0% | |
| ! | AAGCAGTTAACCTTGGTGGT+TGG | - | chr5_3:36974505-36974524 | Msa0809740:three_prime_UTR | 45.0% |
| ! | AGTTAACCTTGGTGGTTGGT+TGG | - | chr5_3:36974509-36974528 | Msa0809740:three_prime_UTR | 45.0% |
| ! | GTTGGTTGGTTACTGAAGGT+TGG | - | chr5_3:36974523-36974542 | Msa0809740:three_prime_UTR | 45.0% |
| GGAATGGCATCAAAGAGTGA+AGG | + | chr5_3:36974555-36974574 | None:intergenic | 45.0% | |
| TATTTGTGTGCAGAGTCTGG+AGG | - | chr5_3:36974778-36974797 | Msa0809740:intron | 45.0% | |
| AGAGGATTTGCAGGCAAAGA+CGG | - | chr5_3:36975354-36975373 | Msa0809740:CDS | 45.0% | |
| TGAGCATAGCTCAGTTGACA+GGG | - | chr5_3:36975868-36975887 | Msa0809740:CDS | 45.0% | |
| AGGTTAGAGCTCAAGAGAAG+AGG | - | chr5_3:36975958-36975977 | Msa0809740:intron | 45.0% | |
| !! | GCACACCAGTTTTAACCACT+AGG | + | chr5_3:36976367-36976386 | None:intergenic | 45.0% |
| AGTGGTTAAAACTGGTGTGC+GGG | - | chr5_3:36976367-36976386 | Msa0809740:CDS | 45.0% | |
| CTTCACGTTACCAATGACGA+TGG | + | chr5_3:36976800-36976819 | None:intergenic | 45.0% | |
| GGTAGGGCAATGGCATATTA+AGG | - | chr5_3:36977137-36977156 | Msa0809740:intron | 45.0% | |
| CCAGTAAGTCAATGGATGAC+TGG | + | chr5_3:36977216-36977235 | None:intergenic | 45.0% | |
| !! | CCAGTCATCCATTGACTTAC+TGG | - | chr5_3:36977213-36977232 | Msa0809740:intron | 45.0% |
| TTCACGGGGTTCATATTTCC+AGG | - | chr5_3:36977492-36977511 | Msa0809740:intron | 45.0% | |
| CAGTTAGAATTCCAGTGGGT+TGG | - | chr5_3:36977578-36977597 | Msa0809740:intron | 45.0% | |
| !! | TTAGAATTCCAGTGGGTTGG+TGG | - | chr5_3:36977581-36977600 | Msa0809740:intron | 45.0% |
| ATTGATCTTCATGCAGCACC+TGG | - | chr5_3:36978047-36978066 | Msa0809740:intron | 45.0% | |
| !! | TCATAGCCATTTTGAGAGCC+AGG | + | chr5_3:36978068-36978087 | None:intergenic | 45.0% |
| GAGCATAGCTCTTCAAGAGA+CGG | - | chr5_3:36978086-36978105 | Msa0809740:intron | 45.0% | |
| CAAGAGACGGTTCACAAGAA+TGG | - | chr5_3:36978099-36978118 | Msa0809740:intron | 45.0% | |
| AGAGACGGTTCACAAGAATG+GGG | - | chr5_3:36978101-36978120 | Msa0809740:intron | 45.0% | |
| CTAAATGAGCCTCTATCACC+AGG | - | chr5_3:36978522-36978541 | Msa0809740:CDS | 45.0% | |
| GAAGAATTCTCTAGGCATGG+AGG | + | chr5_3:36978649-36978668 | None:intergenic | 45.0% | |
| TGGGAAGAATTCTCTAGGCA+TGG | + | chr5_3:36978652-36978671 | None:intergenic | 45.0% | |
| GCTAGTGGGAAGAATTCTCT+AGG | + | chr5_3:36978657-36978676 | None:intergenic | 45.0% | |
| CCATAAGGCCATTAGCTAGT+GGG | + | chr5_3:36978671-36978690 | None:intergenic | 45.0% | |
| !! | CCACTAGCTAATGGCCTTAT+GGG | - | chr5_3:36978669-36978688 | Msa0809740:intron | 45.0% |
| GTCCACTACTACAGCATCTT+TGG | - | chr5_3:36978705-36978724 | Msa0809740:intron | 45.0% | |
| CTCCAAAGATGCTGTAGTAG+TGG | + | chr5_3:36978710-36978729 | None:intergenic | 45.0% | |
| GTTGCTGAGTGGCAAGTTAA+AGG | - | chr5_3:36979222-36979241 | Msa0809740:CDS | 45.0% | |
| ! | TCTGGTCTCTTTTTCTCTCG+AGG | + | chr5_3:36979669-36979688 | None:intergenic | 45.0% |
| !!! | TTCATATAAATATTTTTATT+TGG | + | chr5_3:36978907-36978926 | None:intergenic | 5.0% |
| !! | CTGATTTGGTCTCCCATGTG+TGG | + | chr5_3:36974472-36974491 | None:intergenic | 50.0% |
| CAGTAACCAACCAACCACCA+AGG | + | chr5_3:36974518-36974537 | None:intergenic | 50.0% | |
| ! | GGTGGTTGGTTGGTTACTGA+AGG | - | chr5_3:36974519-36974538 | Msa0809740:three_prime_UTR | 50.0% |
| TGAGCGGTTTGCAACAAGGA+TGG | + | chr5_3:36974809-36974828 | None:intergenic | 50.0% | |
| CACTTGAGCGGTTTGCAACA+AGG | + | chr5_3:36974813-36974832 | None:intergenic | 50.0% | |
| ! | AGCTTTGATTCGAACACGGG+TGG | + | chr5_3:36975103-36975122 | None:intergenic | 50.0% |
| TTTGCAGGCAAAGACGGAAG+AGG | - | chr5_3:36975360-36975379 | Msa0809740:CDS | 50.0% | |
| GTGAGCATAGCTCAGTTGAC+AGG | - | chr5_3:36975867-36975886 | Msa0809740:CDS | 50.0% | |
| GTCTCCTCATTCACACGTGA+TGG | - | chr5_3:36977079-36977098 | Msa0809740:intron | 50.0% | |
| TCCTCATTCACACGTGATGG+TGG | - | chr5_3:36977082-36977101 | Msa0809740:intron | 50.0% | |
| ACCACCATCACGTGTGAATG+AGG | + | chr5_3:36977086-36977105 | None:intergenic | 50.0% | |
| CTACTGATCCAACTCCACCA+TGG | - | chr5_3:36977608-36977627 | Msa0809740:intron | 50.0% | |
| TGTAAGGAACCTCCCACGTA+GGG | + | chr5_3:36977634-36977653 | None:intergenic | 50.0% | |
| TTGTAAGGAACCTCCCACGT+AGG | + | chr5_3:36977635-36977654 | None:intergenic | 50.0% | |
| ACGGACACAGACATAGACAC+AGG | + | chr5_3:36978354-36978373 | None:intergenic | 50.0% | |
| AGTGTTGCACCTGGTGATAG+AGG | + | chr5_3:36978534-36978553 | None:intergenic | 50.0% | |
| ! | CCCACTAGCTAATGGCCTTA+TGG | - | chr5_3:36978668-36978687 | Msa0809740:intron | 50.0% |
| CCCATAAGGCCATTAGCTAG+TGG | + | chr5_3:36978672-36978691 | None:intergenic | 50.0% | |
| GAGAACCTTAGGGTGCATGT+TGG | - | chr5_3:36979105-36979124 | Msa0809740:intron | 50.0% | |
| !! | AAGGTGAATGGGTTGCTGAG+TGG | - | chr5_3:36979211-36979230 | Msa0809740:CDS | 50.0% |
| TTGTGTGCAGAGTCTGGAGG+AGG | - | chr5_3:36974781-36974800 | Msa0809740:intron | 55.0% | |
| GCAAACCGCTCAAGTGCTTC+TGG | - | chr5_3:36974817-36974836 | Msa0809740:intron | 55.0% | |
| ACCGCTCAAGTGCTTCTGGT+TGG | - | chr5_3:36974821-36974840 | Msa0809740:intron | 55.0% | |
| !! | CCCAACCAGAAGCACTTGAG+CGG | + | chr5_3:36974825-36974844 | None:intergenic | 55.0% |
| ! | CCGCTCAAGTGCTTCTGGTT+GGG | - | chr5_3:36974822-36974841 | Msa0809740:intron | 55.0% |
| GTAGCTATCCACCAACCCAC+TGG | + | chr5_3:36977592-36977611 | None:intergenic | 55.0% | |
| ! | GCAGCACCTGGCTCTCAAAA+TGG | - | chr5_3:36978059-36978078 | Msa0809740:intron | 55.0% |
| TTCCAGTGTCAGACACGCGT+CGG | - | chr5_3:36978235-36978254 | Msa0809740:intron | 55.0% | |
| CTGACATCGACACGCCAACA+CGG | + | chr5_3:36978323-36978342 | None:intergenic | 55.0% | |
| ! | ACGTAGGGCCATGGTGGAGT+TGG | + | chr5_3:36977619-36977638 | None:intergenic | 60.0% |
| AACTCCACCATGGCCCTACG+TGG | - | chr5_3:36977618-36977637 | Msa0809740:intron | 60.0% | |
| ACTCCACCATGGCCCTACGT+GGG | - | chr5_3:36977619-36977638 | Msa0809740:intron | 60.0% | |
| GAACCTCCCACGTAGGGCCA+TGG | + | chr5_3:36977628-36977647 | None:intergenic | 65.0% | |
| CACCGACGCGTGTCTGACAC+TGG | + | chr5_3:36978240-36978259 | None:intergenic | 65.0% | |
| CCTCCCACGTAGGGCCATGG+TGG | + | chr5_3:36977625-36977644 | None:intergenic | 70.0% | |
| CCACCATGGCCCTACGTGGG+AGG | - | chr5_3:36977622-36977641 | Msa0809740:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 36974267 | 36979710 | 36974267 | ID=Msa0809740;Name=Msa0809740 |
| chr5_3 | mRNA | 36974267 | 36979710 | 36974267 | ID=Msa0809740-mRNA-1;Parent=Msa0809740;Name=Msa0809740-mRNA-1;_AED=0.13;_eAED=0.13;_QI=132|1|1|1|1|1|8|315|505 |
| chr5_3 | exon | 36974267 | 36974763 | 36974267 | ID=Msa0809740-mRNA-1:exon:11478;Parent=Msa0809740-mRNA-1 |
| chr5_3 | exon | 36975140 | 36975492 | 36975140 | ID=Msa0809740-mRNA-1:exon:11477;Parent=Msa0809740-mRNA-1 |
| chr5_3 | exon | 36975797 | 36975952 | 36975797 | ID=Msa0809740-mRNA-1:exon:11476;Parent=Msa0809740-mRNA-1 |
| chr5_3 | exon | 36976294 | 36976463 | 36976294 | ID=Msa0809740-mRNA-1:exon:11475;Parent=Msa0809740-mRNA-1 |
| chr5_3 | exon | 36978452 | 36978610 | 36978452 | ID=Msa0809740-mRNA-1:exon:11474;Parent=Msa0809740-mRNA-1 |
| chr5_3 | exon | 36978834 | 36979019 | 36978834 | ID=Msa0809740-mRNA-1:exon:11473;Parent=Msa0809740-mRNA-1 |
| chr5_3 | exon | 36979122 | 36979241 | 36979122 | ID=Msa0809740-mRNA-1:exon:11472;Parent=Msa0809740-mRNA-1 |
| chr5_3 | exon | 36979387 | 36979710 | 36979387 | ID=Msa0809740-mRNA-1:exon:11471;Parent=Msa0809740-mRNA-1 |
| chr5_3 | five_prime_UTR | 36979579 | 36979710 | 36979579 | ID=Msa0809740-mRNA-1:five_prime_utr;Parent=Msa0809740-mRNA-1 |
| chr5_3 | CDS | 36979387 | 36979578 | 36979387 | ID=Msa0809740-mRNA-1:cds;Parent=Msa0809740-mRNA-1 |
| chr5_3 | CDS | 36979122 | 36979241 | 36979122 | ID=Msa0809740-mRNA-1:cds;Parent=Msa0809740-mRNA-1 |
| chr5_3 | CDS | 36978834 | 36979019 | 36978834 | ID=Msa0809740-mRNA-1:cds;Parent=Msa0809740-mRNA-1 |
| chr5_3 | CDS | 36978452 | 36978610 | 36978452 | ID=Msa0809740-mRNA-1:cds;Parent=Msa0809740-mRNA-1 |
| chr5_3 | CDS | 36976294 | 36976463 | 36976294 | ID=Msa0809740-mRNA-1:cds;Parent=Msa0809740-mRNA-1 |
| chr5_3 | CDS | 36975797 | 36975952 | 36975797 | ID=Msa0809740-mRNA-1:cds;Parent=Msa0809740-mRNA-1 |
| chr5_3 | CDS | 36975140 | 36975492 | 36975140 | ID=Msa0809740-mRNA-1:cds;Parent=Msa0809740-mRNA-1 |
| chr5_3 | CDS | 36974582 | 36974763 | 36974582 | ID=Msa0809740-mRNA-1:cds;Parent=Msa0809740-mRNA-1 |
| chr5_3 | three_prime_UTR | 36974267 | 36974581 | 36974267 | ID=Msa0809740-mRNA-1:three_prime_utr;Parent=Msa0809740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
