AlfalfaGEDB | Msa0772470

M. sativa cultivar zhongmu-4 / Msa0772470

KEGG: -
GO: GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0004857 GO:0005095 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009898 GO:0009987 GO:0016020 GO:0016247 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0030234 GO:0030695 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034260 GO:0035639 GO:0036094 GO:0043086 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0048519 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051346 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098772 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360
PFAM: PF00503.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0772470	sp\|O80462\|XLG1_ARATH	64.482	763	230	11	9	756	11	747	0.0	944

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0772470	G7K9F9	98.016	756	14	1	1	755	1	756	0.0	1536

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012530	Msa0772470	0.806142	9.498391e-50	-8.615850e-47
Msa0030180	Msa0772470	0.807945	3.943654e-50	-8.615850e-47
Msa0715620	Msa0772470	0.819786	9.670395e-53	-8.615850e-47
Msa0772470	Msa0798430	0.918634	1.223081e-86	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0772470	MtrunA17_Chr5g0402991	98.016	756	14	1	1	755	1	756	0.0	1536
Msa0772470	MtrunA17_Chr8g0374061	80.331	544	104	2	214	755	91	633	0.0	922
Msa0772470	MtrunA17_Chr1g0162561	59.227	569	209	7	198	757	169	723	0.0	673
Msa0772470	MtrunA17_Chr6g0479291	46.424	769	359	13	6	749	39	779	0.0	655
Msa0772470	MtrunA17_Chr5g0410081	54.325	578	239	10	192	755	125	691	0.0	603
Msa0772470	MtrunA17_Chr1g0151141	32.472	271	135	12	496	758	39	269	1.10e-22	101

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0772470	AT2G23460.1	64.482	763	230	11	9	756	11	747	0.0	944
Msa0772470	AT1G31930.5	57.854	522	206	7	239	751	176	692	0.0	610
Msa0772470	AT1G31930.2	57.854	522	206	7	239	751	176	692	0.0	610
Msa0772470	AT1G31930.3	57.854	522	206	7	239	751	176	692	0.0	610
Msa0772470	AT1G31930.6	57.854	522	206	7	239	751	176	692	0.0	610
Msa0772470	AT1G31930.1	57.854	522	206	7	239	751	176	692	0.0	610
Msa0772470	AT1G31930.4	57.854	522	206	7	239	751	176	692	0.0	610
Msa0772470	AT4G34390.1	55.832	523	210	7	233	755	208	709	0.0	580
Msa0772470	AT4G34390.2	50.669	523	198	6	233	755	208	670	3.76e-166	500
Msa0772470	AT2G26300.2	30.435	253	136	10	496	748	38	250	4.43e-21	96.7

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Find 223 sgRNAs with CRISPR-Local

Find 444 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAGCCGTTAACCAA+GGG	0.636126	5_2:+46844029	Msa0772470:CDS
AAACTGATCATAGTCACTCA+AGG	0.614491	5_2:-46848919	None:intergenic
AAAGAGAGAGTTTCGGAGAG+AGG	0.567003	5_2:-46843477	None:intergenic
AACCAGTCACACTTGGTCAA+AGG	0.568433	5_2:-46849092	None:intergenic
AACCATGGCATCGGGCAAAC+TGG	0.381217	5_2:+46847939	Msa0772470:CDS
AACCGGTAAAGAGAGAGTTT+CGG	0.554457	5_2:-46843484	None:intergenic
AACGAAGAAACACGCGTCGA+TGG	0.523016	5_2:-46843885	None:intergenic
AACTAGAAGCTCTAGTACTA+TGG	0.353152	5_2:+46843809	Msa0772470:CDS
AACTGATTAGAGTGCATGCA+AGG	0.522285	5_2:+46848829	Msa0772470:CDS
AAGAAATAAGTGGCAACACT+AGG	0.530699	5_2:-46848072	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAATAGGTTGTTTGTTCAG+TGG	-	chr5_2:46843221-46843240	None:intergenic	30.0%
ATTCCGTTTGAGAAATCAAA+CGG	-	chr5_2:46843699-46843718	None:intergenic	30.0%
GGAATTGAAAATGAAATCTC+CGG	+	chr5_2:46843714-46843733	Msa0772470:CDS	30.0%
TGGAATTGAATCAACAAGAT+TGG	+	chr5_2:46843829-46843848	Msa0772470:CDS	30.0%
GGAATTGAATCAACAAGATT+GGG	+	chr5_2:46843830-46843849	Msa0772470:CDS	30.0%
GAATTGAATCAACAAGATTG+GGG	+	chr5_2:46843831-46843850	Msa0772470:CDS	30.0%
GAATAGGTTTACTGATAAAG+AGG	+	chr5_2:46844085-46844104	Msa0772470:CDS	30.0%
AGTCGAATAGAGCAAATTTA+GGG	+	chr5_2:46844216-46844235	Msa0772470:CDS	30.0%
CAAATTTAGGGAAATGTTCT+CGG	+	chr5_2:46844228-46844247	Msa0772470:CDS	30.0%
CCATTCACACAAATGTAATT+CGG	-	chr5_2:46844335-46844354	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	46843185	46849108	46843185	ID=Msa0772470;Name=Msa0772470
chr5_2	mRNA	46843185	46849108	46843185	ID=Msa0772470-mRNA-1;Parent=Msa0772470;Name=Msa0772470-mRNA-1;_AED=0.08;_eAED=0.08;_QI=166\|0.87\|0.77\|1\|0.75\|0.66\|9\|0\|765
chr5_2	exon	46843185	46844466	46843185	ID=Msa0772470-mRNA-1:exon:13989;Parent=Msa0772470-mRNA-1
chr5_2	exon	46844570	46844707	46844570	ID=Msa0772470-mRNA-1:exon:13990;Parent=Msa0772470-mRNA-1
chr5_2	exon	46844825	46844929	46844825	ID=Msa0772470-mRNA-1:exon:13991;Parent=Msa0772470-mRNA-1
chr5_2	exon	46845017	46845202	46845017	ID=Msa0772470-mRNA-1:exon:13992;Parent=Msa0772470-mRNA-1
chr5_2	exon	46845964	46846141	46845964	ID=Msa0772470-mRNA-1:exon:13993;Parent=Msa0772470-mRNA-1
chr5_2	exon	46847860	46848101	46847860	ID=Msa0772470-mRNA-1:exon:13994;Parent=Msa0772470-mRNA-1
chr5_2	exon	46848242	46848405	46848242	ID=Msa0772470-mRNA-1:exon:13995;Parent=Msa0772470-mRNA-1
chr5_2	exon	46848824	46848957	46848824	ID=Msa0772470-mRNA-1:exon:13996;Parent=Msa0772470-mRNA-1
chr5_2	exon	46849074	46849108	46849074	ID=Msa0772470-mRNA-1:exon:13997;Parent=Msa0772470-mRNA-1
chr5_2	five_prime_UTR	46843185	46843350	46843185	ID=Msa0772470-mRNA-1:five_prime_utr;Parent=Msa0772470-mRNA-1
chr5_2	CDS	46843351	46844466	46843351	ID=Msa0772470-mRNA-1:cds;Parent=Msa0772470-mRNA-1
chr5_2	CDS	46844570	46844707	46844570	ID=Msa0772470-mRNA-1:cds;Parent=Msa0772470-mRNA-1
chr5_2	CDS	46844825	46844929	46844825	ID=Msa0772470-mRNA-1:cds;Parent=Msa0772470-mRNA-1
chr5_2	CDS	46845017	46845202	46845017	ID=Msa0772470-mRNA-1:cds;Parent=Msa0772470-mRNA-1
chr5_2	CDS	46845964	46846141	46845964	ID=Msa0772470-mRNA-1:cds;Parent=Msa0772470-mRNA-1
chr5_2	CDS	46847860	46848101	46847860	ID=Msa0772470-mRNA-1:cds;Parent=Msa0772470-mRNA-1
chr5_2	CDS	46848242	46848405	46848242	ID=Msa0772470-mRNA-1:cds;Parent=Msa0772470-mRNA-1
chr5_2	CDS	46848824	46848957	46848824	ID=Msa0772470-mRNA-1:cds;Parent=Msa0772470-mRNA-1
chr5_2	CDS	46849074	46849108	46849074	ID=Msa0772470-mRNA-1:cds;Parent=Msa0772470-mRNA-1

Gene Sequence

>Msa0772470

ATGTTGCCGGCGCCGGAATATTCCTTCGCCGTCGAATACGACGGACCACCGTTAACTTACGATCTTCCCCGAGCTGTTCCCATCACCGTCGACAACATTCCGGTCGCCGCCGTCGTTTCCCAGGTTCCTCTCTCCGAAACTCTCTCTTTACCGGTTGTGCAACCTCTCTTACCACCGCACCATGCAAAGGAGCTTAGAGCACTAAACTCCGGCGAATCTAGGGTTTCCAAAGAACTCGAATTAGCTTCGGAGAGAACGGTTTCTCCAACTTCTGTTATTGCTTTCGATCACCGTGGTTCGCAGATTAACGTCTGCGAACTTTCCGGTGAATTAAGTAGTTCTGGACCGTTTGATTTCTCAAACGGAATTGAAAATGAAATCTCCGGCGAGTTTTCCGATTTGGGTGATTCTTCCAGGTTGCTCGAAGAATCAACCTCCAGTGAGTTGCCGAGCAGTAGAACTAGAAGCTCTAGTACTATGGAATTGAATCAACAAGATTGGGGTTCAACTGAGTCTGTGTTGAGTTTAGAGTATCCATCGACGCGTGTTTCTTCGTTGAAAGCGGAGGATTGTGATGGTAAACGTGTTCCGGCTGTTACGTTTGATGTGGAATCTGATGAGGAGGAGGATGATTTGAATGAGGAGTTTGAAGTTGAGGAAACCGTGGCTAGACCGGTTAAAAGGGAGCCGTTAACCAAGGGAAAGAAAGGGTCGTGTTATCGATGTTTTAAGGGGAATAGGTTTACTGATAAAGAGGTTTGTTTGGTTTGTGATGCAAAGTATTGTAGTAATTGTGTGCTTAGAGCAATGGGGTCTATGCCAGAAGGTAGAAAATGTGTTACTTGCATTGGATTTGCTATAGATGAGTCGAATAGAGCAAATTTAGGGAAATGTTCTCGGATGCTTAAGCGATTGCTTAATCAGTTGGAGGTTAGACAGATAATGAAAGCTGAGAAGTTTTGTGAAGCAAATCAGCTTCCACCGAATTACATTTGTGTGAATGGGAAACCACTTTCTTATGAGGAATTAGTTACCTTGCAGAACTGTCAGAACCCTCCAAAGAAGCTTAAGCCGGGAAACTATTGGTATGATAAAGTATCTGGATTTTGGGGGAAGGAAGGACAGAAGCCTTCCAGTATCATTAGTGCCCATCTGAATGTTGGAAGTCCCATCCAGCCAGATGCTAGCAACGGAAACACGCAGGTTTTCGTTAATGGTCGTGAAATAACAAAAGTGGAGCTTCGAATGTTGCAGTTGGCAGGAGTTCAGACTGCTGGTAACCCACATTTTTGGGTCAATGAGGATGGTTCCTATCAAGAAGAGGGACAGAAGAATACACGAGGGTACATATGGGGAAAGGCTGGAACCAAGCTTGTATGCGCTTTCCTGTCCCTGCCAGTTCCTTCTAAATCCTCGAATTCTCTTGGAGAACAACACTCCAATTTGGCTAGCAGATCAATTCCCGACTACCTTGAGCACGGAATAGTTCAGAAGCTTCTCTTGGTTGGTTGCAGTGGATCTGGAACGAGCACTATTTTTAAGCAGGCCAAGATTCTTTACAAAAGCATCCCCTTCTCAGAAGATGAGCATGAAAATATTATATTGACCATTCAGAGCAATGTTTACACCTACCTTGGCATGCTCCTTGAGGGCCGTGAGCGTTTTGAGGATGAAATATTGGCAGATTTAACGAAAAGGCAATCTTCCGTGCTTGATACAACAGGAACCAATCCAAAACCCGATGATAAGACAGTATATTCCATTGGCCCAAGGCTGAAAGCATTCTCTGATTGGTTGCTGAAAACCATGGCATCGGGCAAACTGGAAGCTATTTTTCCTGCTGCTACTCGTGAATATGCACCATTGATTGAGGAATTATGGAATGATGCTGCCATTAAGGCAACATATGAAAGAAGAAGTGAATTGGAAATGCTGCCTAGTGTTGCCACTTATTTCTTAGAGCGGGCTGTCAAAATATTAAGGACAGATTATGAACCCTCGGATTTAGATATCCTCTATGCTGAAGGAGTTACTTCATCAAATGGGTTGGCTTGTGTGGAGTTTTCATTTCCCCAATCAGCTCCTGAGGAAACTGTGGACACTACTGATCAATATGATTCTTTGGCTAGGTATCAACTGATTAGAGTGCATGCAAGGGGACTTGGAGAAAATTGCAAGTGGCTAGAGATGTTTGAGGATGTTGAAATGGTCATCTTCTGTGTTTCCTTGAGTGACTATGATCAGTTTTCTGTCGATGGAAATGGAGAAAGTCGAACAAGTTCCTTTGACCAAGTGTGA

Protein sequence

>Msa0772470

MLPAPEYSFAVEYDGPPLTYDLPRAVPITVDNIPVAAVVSQVPLSETLSLPVVQPLLPPHHAKELRALNSGESRVSKELELASERTVSPTSVIAFDHRGSQINVCELSGELSSSGPFDFSNGIENEISGEFSDLGDSSRLLEESTSSELPSSRTRSSSTMELNQQDWGSTESVLSLEYPSTRVSSLKAEDCDGKRVPAVTFDVESDEEEDDLNEEFEVEETVARPVKREPLTKGKKGSCYRCFKGNRFTDKEVCLVCDAKYCSNCVLRAMGSMPEGRKCVTCIGFAIDESNRANLGKCSRMLKRLLNQLEVRQIMKAEKFCEANQLPPNYICVNGKPLSYEELVTLQNCQNPPKKLKPGNYWYDKVSGFWGKEGQKPSSIISAHLNVGSPIQPDASNGNTQVFVNGREITKVELRMLQLAGVQTAGNPHFWVNEDGSYQEEGQKNTRGYIWGKAGTKLVCAFLSLPVPSKSSNSLGEQHSNLASRSIPDYLEHGIVQKLLLVGCSGSGTSTIFKQAKILYKSIPFSEDEHENIILTIQSNVYTYLGMLLEGRERFEDEILADLTKRQSSVLDTTGTNPKPDDKTVYSIGPRLKAFSDWLLKTMASGKLEAIFPAATREYAPLIEELWNDAAIKATYERRSELEMLPSVATYFLERAVKILRTDYEPSDLDILYAEGVTSSNGLACVEFSFPQSAPEETVDTTDQYDSLARYQLIRVHARGLGENCKWLEMFEDVEMVIFCVSLSDYDQFSVDGNGESRTSSFDQV*