AlfalfaGEDB | Msa0012530

M. sativa cultivar zhongmu-4 / Msa0012530

KEGG: K11699
GO: GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0012530	sp\|Q9LQV2\|RDR1_ARATH	49.419	172	85	2	5	175	3	173	1.59e-50	179

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006110	Msa0012530	0.803512	3.365315e-49	-8.615850e-47
Msa0006390	Msa0012530	0.806522	7.898829e-50	-8.615850e-47
Msa0008670	Msa0012530	0.801943	7.091192e-49	-8.615850e-47
Msa0012060	Msa0012530	0.809492	1.842279e-50	-8.615850e-47
Msa0012530	Msa0017510	0.850108	2.101927e-60	-8.615850e-47
Msa0012530	Msa0028640	0.800084	1.700862e-48	-8.615850e-47
Msa0012530	Msa0030180	0.805349	1.393396e-49	-8.615850e-47
Msa0012530	Msa0034270	0.805112	1.562514e-49	-8.615850e-47
Msa0012530	Msa0045790	0.811378	7.213955e-51	-8.615850e-47
Msa0012530	Msa0046160	0.811769	5.930454e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0012530	MtrunA17_Chr1g0161491	93.714	175	11	0	1	175	15	189	3.58e-111	343
Msa0012530	MtrunA17_Chr1g0161521	74.317	183	42	3	1	178	1	183	1.25e-82	266
Msa0012530	MtrunA17_Chr1g0161511	74.157	178	43	2	1	175	1	178	2.63e-81	262
Msa0012530	MtrunA17_Chr1g0161471	71.910	178	47	2	1	175	1	178	7.41e-80	258
Msa0012530	MtrunA17_Chr1g0161451	34.682	173	111	2	4	175	2	173	4.27e-27	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0012530	AT1G14790.1	49.419	172	85	2	5	175	3	173	1.62e-51	179

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Find 47 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGTTACATTCATGA+TGG	0.597041	1_1:+18759906	Msa0012530:CDS
AAAACCCGAAAGGGCGGCTT+AGG	0.422242	1_1:+18761566	Msa0012530:CDS
AAACTGTCCAAGAATGCCCT+TGG	0.565377	1_1:-18760009	None:intergenic
AACCGCAATTTAGTTCTGCT+AGG	0.654522	1_1:-18759934	None:intergenic
AAGATTCTCTATATTATGGA+AGG	0.592994	1_1:+18760074	Msa0012530:CDS
AAGTTGAAAACCCGAAAGGG+CGG	0.657125	1_1:+18761560	Msa0012530:CDS
AGATATTGATCCAAAGCCAA+GGG	0.640291	1_1:+18759993	Msa0012530:CDS
AGCAGAACTAAATTGCGGTT+CGG	0.428037	1_1:+18759937	Msa0012530:CDS
AGCTTTCATATGAGAATATT+TGG	0.191630	1_1:+18760178	Msa0012530:CDS
AGGAAAGATTCTCTATATTA+TGG	0.268444	1_1:+18760070	Msa0012530:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAATAATTGCAAATGCTCT+TGG	-	chr1_1:18759874-18759893	None:intergenic	30.0%
GGAACTCCTATTTAAAAGTT+AGG	+	chr1_1:18759959-18759978	Msa0012530:CDS	30.0%
ATTCTCTATATTATGGAAGG+TGG	+	chr1_1:18760077-18760096	Msa0012530:CDS	30.0%
AGAAAGATTCAAGAATGACA+TGG	-	chr1_1:18760658-18760677	None:intergenic	30.0%
TAAACTAACAATGTTCCACA+AGG	-	chr1_1:18760944-18760963	None:intergenic	30.0%
GATTTACAAAGCTTGGAAAA+TGG	-	chr1_1:18761171-18761190	None:intergenic	30.0%
TTTCAATACATGTTACAAGC+AGG	+	chr1_1:18761445-18761464	Msa0012530:intron	30.0%
TGAATAATTGCAAATGCTCT+TGG	-	chr1_1:18759874-18759893	None:intergenic	30.0%
GGAACTCCTATTTAAAAGTT+AGG	+	chr1_1:18759959-18759978	Msa0012530:CDS	30.0%
ATTCTCTATATTATGGAAGG+TGG	+	chr1_1:18760077-18760096	Msa0012530:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	18759733	18761613	18759733	ID=Msa0012530;Name=Msa0012530
chr1_1	mRNA	18759733	18761613	18759733	ID=Msa0012530-mRNA-1;Parent=Msa0012530;Name=Msa0012530-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|222
chr1_1	exon	18759733	18760254	18759733	ID=Msa0012530-mRNA-1:exon:6923;Parent=Msa0012530-mRNA-1
chr1_1	exon	18761467	18761613	18761467	ID=Msa0012530-mRNA-1:exon:6924;Parent=Msa0012530-mRNA-1
chr1_1	CDS	18759733	18760254	18759733	ID=Msa0012530-mRNA-1:cds;Parent=Msa0012530-mRNA-1
chr1_1	CDS	18761467	18761613	18761467	ID=Msa0012530-mRNA-1:cds;Parent=Msa0012530-mRNA-1

Gene Sequence

>Msa0012530

ATGGGTAAAAGTAAAACAATTGAGTTGTATGGATTCCCTTCTTTTGTGAACGTGTCTCAAGTAAAGATATTTGTAGAGCATTATACTGGTGAAGGAAGTGTGGTTGCTATGAAGATTAGAGTAGGCAAAGGACAGAATCCAAGAGCATTTGCAATTATTCAATTCACTGCTGCAAAACATGTTACATTCATGATGGCCTTACCTAGCAGAACTAAATTGCGGTTCGGGAACTCCTATTTAAAAGTTAGGGAAATGGAAAGAGATATTGATCCAAAGCCAAGGGCATTCTTGGACAGTTTAGACGATGTTAAACTGTATTTTGGCTGTCAGATCTCAAAGGAAAGATTCTCTATATTATGGAAGGTGGATGCTAGTGTAGATTTTGGGATTGGTATGAGAAAGTGGCGATTCTCTATGCTCCATGAAAATAAGAAGTTCAAACTTGAGCTTTCATATGAGAATATTTGGAAGATTGAGCTGCATCAACCACAGGGTAAAACTGCAAAGTATCTATTGATTCAGGTTACTCCCCAGGATGATCTGTGGTCAATGGCAAGAATGAAAAAAAAACAGAATGAAAATGGAAAAATGAAAAATGAAAATGAAAAGCTCGCTAAGTTGAAAACCCGAAAGGGCGGCTTAGGCAAAAATGAGCACCCCGCTGATTGA

Protein sequence

>Msa0012530

MGKSKTIELYGFPSFVNVSQVKIFVEHYTGEGSVVAMKIRVGKGQNPRAFAIIQFTAAKHVTFMMALPSRTKLRFGNSYLKVREMERDIDPKPRAFLDSLDDVKLYFGCQISKERFSILWKVDASVDFGIGMRKWRFSMLHENKKFKLELSYENIWKIELHQPQGKTAKYLLIQVTPQDDLWSMARMKKKQNENGKMKNENEKLAKLKTRKGGLGKNEHPAD*