AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0030180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030180 MtrunA17_Chr1g0187801 98.644 590 8 0 1 590 1 590 0.0 1207
Msa0030180 MtrunA17_Chr1g0167721 77.265 585 127 5 4 584 2 584 0.0 934
Msa0030180 MtrunA17_Chr5g0426121 58.813 573 215 5 2 563 5 567 0.0 694
Msa0030180 MtrunA17_Chr4g0003821 28.958 518 321 18 1 493 11 506 1.48e-51 186
Msa0030180 MtrunA17_Chr3g0138841 28.163 490 278 18 2 446 94 554 2.28e-28 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030180 AT1G04400.1 69.340 561 159 4 5 562 6 556 0.0 807
Msa0030180 AT1G04400.2 69.340 561 159 4 5 562 6 556 0.0 807
Msa0030180 AT4G08920.1 59.555 539 207 5 7 536 15 551 0.0 667
Msa0030180 AT3G15620.1 29.735 528 315 17 6 501 26 529 2.83e-53 191
Msa0030180 AT5G24850.1 30.105 475 270 20 2 444 82 526 2.69e-34 138
Msa0030180 AT3G15620.2 29.009 424 249 15 6 397 26 429 8.07e-32 129

Find 227 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAATTATGTTTCTAAATT+AGG 0.046710 1_1:+56257350 Msa0030180:five_prime_UTR
TCTGATAGCAATTCCTTTAT+TGG 0.107689 1_1:+56262233 Msa0030180:three_prime_UTR
CAAGGCTTTAACAGAATTTA+TGG 0.120110 1_1:+56259050 Msa0030180:CDS
ACTCTTCCTTGCACCCTTTC+AGG 0.148344 1_1:-56262133 None:intergenic
CACAGAAAACAGTTCATTTA+TGG 0.162448 1_1:-56261627 None:intergenic
TAAAATTGTCCTTCCTCTTT+AGG 0.172518 1_1:-56257853 None:intergenic
CAAGACTATCAAAATATTTA+AGG 0.174603 1_1:-56261733 None:intergenic
TCAGAAAGTGCCGGCATTTC+AGG 0.176635 1_1:+56260945 Msa0030180:CDS
TCGTCTACTAGATTAGTTTA+TGG 0.184761 1_1:-56261766 None:intergenic
GCCATATCTATATCAATTAT+TGG 0.201692 1_1:-56260751 None:intergenic
TGCCTTACATATTCTCCTTC+TGG 0.214099 1_1:-56260616 None:intergenic
AATGGGGAATGAAGTATTTC+TGG 0.219485 1_1:+56259520 Msa0030180:CDS
TGGCTATATTCTCAATAAAA+TGG 0.230875 1_1:+56261648 Msa0030180:three_prime_UTR
TCTTATCTAAGTTGAAAATA+AGG 0.233821 1_1:-56257197 None:intergenic
AATTTCCCACATCTTGAATA+TGG 0.234109 1_1:-56260794 None:intergenic
TTTGAAGCCTAGATATAATA+TGG 0.235090 1_1:+56257720 Msa0030180:exon
CTGTATTCCCTGTGTTTATA+TGG 0.246769 1_1:+56257827 Msa0030180:CDS
TTAATTATGTTTCTAAATTA+GGG 0.252907 1_1:+56257351 Msa0030180:five_prime_UTR
CCTAATAGGTAGTTCATTCT+TGG 0.253419 1_1:-56260971 None:intergenic
ATAATGTTATTAACTCAATA+AGG 0.254817 1_1:-56262018 None:intergenic
GTATTTCTGGGACACGCTTT+TGG 0.272715 1_1:+56259533 Msa0030180:CDS
GAACCATTGTTTGGTTTAGA+AGG 0.277961 1_1:+56257752 Msa0030180:CDS
AAGCTTGCTATGGAAATTCT+AGG 0.296623 1_1:+56262302 Msa0030180:three_prime_UTR
AAGAAAATCCACCAATCTAT+AGG 0.299613 1_1:-56262211 None:intergenic
ACTCATGAGAGAGCACTTCT+TGG 0.306648 1_1:+56259315 Msa0030180:CDS
CATGTGGGCTGAGTTGGTTT+TGG 0.306649 1_1:+56257432 Msa0030180:five_prime_UTR
TCCTTAAGGAGGACAACTTT+TGG 0.310889 1_1:-56260889 None:intergenic
TTGCATACTACTTTGCTATC+TGG 0.318194 1_1:-56257467 None:intergenic
CCAAGAATGAACTACCTATT+AGG 0.326165 1_1:+56260971 Msa0030180:CDS
AAATGTTCAATAGAGGATTT+AGG 0.326416 1_1:+56258952 Msa0030180:CDS
CAAGCAGCATCAAAAGCTTC+TGG 0.339324 1_1:+56260817 Msa0030180:CDS
CTCCAAGTCTTGAAGTTTGA+CGG 0.343433 1_1:-56259369 None:intergenic
TATTATACAAAAGGCCTTGA+TGG 0.344194 1_1:-56262158 None:intergenic
TTATCAGTGAAAAGCTATAA+TGG 0.349616 1_1:+56258529 Msa0030180:CDS
TGTTGCTTCTACCTTGGAAA+TGG 0.350799 1_1:+56259502 Msa0030180:CDS
TGCAAGCATCTCTGCCAAAA+AGG 0.354280 1_1:-56258616 None:intergenic
TTGCTACCCATATTATATCT+AGG 0.355825 1_1:-56257727 None:intergenic
TATCAGTGAAAAGCTATAAT+GGG 0.356330 1_1:+56258530 Msa0030180:CDS
CTGTAGAGCAAGTGTCTTCA+TGG 0.357346 1_1:-56261080 None:intergenic
CTGGATTGTCCTCAATTCTA+AGG 0.360401 1_1:-56257777 None:intergenic
ATTCCTTTATTGAGCCTTGA+TGG 0.361770 1_1:+56262048 Msa0030180:three_prime_UTR
TCCAAAAGTTGTCCTCCTTA+AGG 0.363395 1_1:+56260888 Msa0030180:CDS
CTCTTAGTCCAATTGCTCTA+AGG 0.366113 1_1:-56259257 None:intergenic
CAAGGTAGTTGCTCCAATAA+AGG 0.366644 1_1:-56262246 None:intergenic
ATAAGCTATAAGTACTTGTT+AGG 0.370776 1_1:+56257503 Msa0030180:five_prime_UTR
GTTGCTTCTACCTTGGAAAT+GGG 0.372170 1_1:+56259503 Msa0030180:CDS
ATGAGCACTGCAGCTGCTAC+TGG 0.373841 1_1:-56261589 None:intergenic
CACCACCTTGAAACTCTTCC+TGG 0.373919 1_1:-56257877 None:intergenic
TCCAATAATTGATATAGATA+TGG 0.381151 1_1:+56260750 Msa0030180:CDS
AAACCAAGCAACGCGTTACT+AGG 0.385656 1_1:+56258994 Msa0030180:CDS
CAGTGCTCATGGAAAGAAAA+TGG 0.390156 1_1:+56261602 Msa0030180:CDS
TGTATGTAGGAATGGAAGAT+AGG 0.391374 1_1:-56257123 None:intergenic
TGCAGGAATGAGAGAACTTT+GGG 0.399544 1_1:+56259422 Msa0030180:CDS
TCTATATCAATTATTGGATT+CGG 0.400812 1_1:-56260745 None:intergenic
GTTGTGTTTAACCATCTCTA+TGG 0.405567 1_1:+56258027 Msa0030180:CDS
ATATGCATCAAGTTCCAAAA+AGG 0.405729 1_1:-56261827 None:intergenic
TTATCCCCGTATCTCCATTT+CGG 0.407052 1_1:+56259135 Msa0030180:CDS
CTAATAGGTAGTTCATTCTT+GGG 0.407605 1_1:-56260970 None:intergenic
TGGTCTCGAACCAGTGAAAC+AGG 0.407880 1_1:-56258475 None:intergenic
TTCCCATCAAGGCTCAATAA+AGG 0.408230 1_1:-56262051 None:intergenic
AGAAAATCCACCAATCTATA+GGG 0.409775 1_1:-56262210 None:intergenic
CTCATTCCTGCATCAACTAA+AGG 0.411661 1_1:-56259411 None:intergenic
ATAAGTATTAAGAATAAGAT+TGG 0.412388 1_1:-56262098 None:intergenic
CGTCCTAGTAACGCGTTGCT+TGG 0.415085 1_1:-56258997 None:intergenic
CGCTCAAGCTCGTGACCGTC+TGG 0.421155 1_1:-56259609 None:intergenic
ATGAGAGAACTTTGGGCTAC+AGG 0.422513 1_1:+56259429 Msa0030180:CDS
CTTAGTGTGCTTAGAGCATC+AGG 0.428735 1_1:+56260700 Msa0030180:CDS
CAAGGTGGAATAAGCGAAAC+AGG 0.434780 1_1:-56258652 None:intergenic
TTTATCAGATCCTGTTTCAC+TGG 0.435781 1_1:+56258465 Msa0030180:intron
CTTATCTAAGTTGAAAATAA+GGG 0.436200 1_1:-56257196 None:intergenic
ATATTTAAGGACTTCTCATT+CGG 0.438839 1_1:-56261720 None:intergenic
GTAGCAATAGAACCATTGTT+TGG 0.440981 1_1:+56257743 Msa0030180:CDS
TGTCCCTTTCACAAGTTTGA+AGG 0.442030 1_1:-56257411 None:intergenic
CAGCACTAGCTGCTGCTGCT+AGG 0.442114 1_1:+56257797 Msa0030180:CDS
ATGCAGGAATGAGAGAACTT+TGG 0.446720 1_1:+56259421 Msa0030180:CDS
TCTTGAATATGGCTTGAGTC+AGG 0.448589 1_1:-56260783 None:intergenic
CTAGCAGCAGCAGCTAGTGC+TGG 0.448793 1_1:-56257796 None:intergenic
TGAAAATGTTGCTTCTACCT+TGG 0.450718 1_1:+56259496 Msa0030180:CDS
GATGTAACCTCCTCTGATGA+TGG 0.452559 1_1:+56262269 Msa0030180:three_prime_UTR
TCTCGAACCAAGTGATTTCA+AGG 0.453164 1_1:-56257932 None:intergenic
TCACACTCAACTCTCCGAAA+TGG 0.453446 1_1:-56259149 None:intergenic
ACTATCTTTCACATGATTCA+CGG 0.453888 1_1:-56261040 None:intergenic
TAATGTTATTAACTCAATAA+GGG 0.454184 1_1:-56262017 None:intergenic
TTGAAACTATAACTCTGATT+CGG 0.455014 1_1:-56259464 None:intergenic
AAAGTAGTGTCCCTATAGAT+TGG 0.456375 1_1:+56262200 Msa0030180:three_prime_UTR
TTGGAACTTGATGCATATGA+AGG 0.457765 1_1:+56261832 Msa0030180:three_prime_UTR
GACATGTATACATGCTAGTA+AGG 0.463142 1_1:+56261875 Msa0030180:three_prime_UTR
CACTACTTTGAAAGAAGTCT+TGG 0.464493 1_1:-56262186 None:intergenic
GGCTACCCTTTAGTTGATGC+AGG 0.466577 1_1:+56259405 Msa0030180:CDS
TTGGCACATTATTATACAAA+AGG 0.466771 1_1:-56262167 None:intergenic
TCATTCCTGCATCAACTAAA+GGG 0.470820 1_1:-56259410 None:intergenic
CTGAGTGGATCCATCATCCT+TGG 0.471071 1_1:+56260668 Msa0030180:CDS
CCAAAATCTTATCAAAGAAA+AGG 0.471643 1_1:-56257162 None:intergenic
AGCACTAGCTGCTGCTGCTA+GGG 0.473785 1_1:+56257798 Msa0030180:CDS
GAGATGCTTGCACAAGCAAA+TGG 0.474718 1_1:+56258627 Msa0030180:CDS
CGGTCACGAGCTTGAGCGCT+TGG 0.474915 1_1:+56259614 Msa0030180:CDS
TAGAAGGGACCTTAGAATTG+AGG 0.477865 1_1:+56257768 Msa0030180:CDS
AACTCTCCGAAATGGAGATA+CGG 0.477912 1_1:-56259141 None:intergenic
CTCGGCTGGCAGTATATCTC+AGG 0.480304 1_1:+56259579 Msa0030180:CDS
CCTTGATGGGAACTCATCAT+TGG 0.480346 1_1:+56262062 Msa0030180:three_prime_UTR
CTAGCTGCTGCTGCTAGGGA+TGG 0.482748 1_1:+56257802 Msa0030180:CDS
AAAGAAAAGCTAGTGGAACT+TGG 0.484127 1_1:+56258505 Msa0030180:CDS
ATCCGTCAAACTTCAAGACT+TGG 0.488443 1_1:+56259367 Msa0030180:CDS
AGTCAAGAAATGTTCAATAG+AGG 0.489309 1_1:+56258945 Msa0030180:CDS
CTAGGACGAGCATGGTCTCC+AGG 0.489522 1_1:+56259012 Msa0030180:CDS
ACTCTCCGAAATGGAGATAC+GGG 0.489556 1_1:-56259140 None:intergenic
CTTTATTGGAGCAACTACCT+TGG 0.489756 1_1:+56262247 Msa0030180:three_prime_UTR
ATCCAGAAGGAGAATATGTA+AGG 0.496224 1_1:+56260614 Msa0030180:CDS
GATCAGTCCTTGAAATCACT+TGG 0.496518 1_1:+56257925 Msa0030180:CDS
ATGCCTTCAAACTTGTGAAA+GGG 0.496931 1_1:+56257408 Msa0030180:five_prime_UTR
TACTTCACTACTCCAAGAAT+AGG 0.498999 1_1:+56259082 Msa0030180:CDS
GAGTACTCTCAATGCTCTCT+TGG 0.499541 1_1:+56257975 Msa0030180:CDS
AGTAGCAGCTGCAGTGCTCA+TGG 0.499803 1_1:+56261591 Msa0030180:CDS
GGATCTGTTGTATGAGCCTT+GGG 0.500509 1_1:+56258552 Msa0030180:CDS
TTTATCCAGGAAGAGTTTCA+AGG 0.505143 1_1:+56257872 Msa0030180:CDS
TTGTCAGCATTGCTCCAACC+TGG 0.505947 1_1:-56259030 None:intergenic
TTCTTGGGATCCTGAAATGC+CGG 0.507322 1_1:-56260955 None:intergenic
AACCATTGTTTGGTTTAGAA+GGG 0.509245 1_1:+56257753 Msa0030180:CDS
AGATCACATGTCAAGGAGAA+AGG 0.510272 1_1:-56257041 None:intergenic
TGAAGAGAAGAGAAAGAACA+AGG 0.511587 1_1:+56261011 Msa0030180:CDS
CTACTCCAAGAATAGGCAAA+AGG 0.511893 1_1:+56259089 Msa0030180:CDS
AAGGGACATGTGGGCTGAGT+TGG 0.512399 1_1:+56257426 Msa0030180:five_prime_UTR
TTCCTTTATTGAGCCTTGAT+GGG 0.513632 1_1:+56262049 Msa0030180:three_prime_UTR
ATTATACAAAAGGCCTTGAT+GGG 0.516458 1_1:-56262157 None:intergenic
AGCCGAGGATATCACATTCA+AGG 0.517876 1_1:-56259563 None:intergenic
AGCTTCTGGCTCTGAAGCAA+GGG 0.519234 1_1:+56260831 Msa0030180:CDS
CAAACTTGAGAACTAAGATA+AGG 0.520144 1_1:-56257261 None:intergenic
ATGGGGAATGAAGTATTTCT+GGG 0.522424 1_1:+56259521 Msa0030180:CDS
GAAGCAGTCTTTAGTTCACT+TGG 0.523042 1_1:+56257903 Msa0030180:CDS
AAGCTTCTGGCTCTGAAGCA+AGG 0.524562 1_1:+56260830 Msa0030180:CDS
TGTTCACAAGTGTTTATCAC+CGG 0.530213 1_1:-56262346 None:intergenic
CAGGAAGAGTTTCAAGGTGG+TGG 0.530377 1_1:+56257878 Msa0030180:CDS
GTCGATGTCCCTCCACTGCA+TGG 0.531062 1_1:-56262530 None:intergenic
GATGCCTTCAAACTTGTGAA+AGG 0.535690 1_1:+56257407 Msa0030180:five_prime_UTR
ACATGCAGTGTATGTAGGAA+TGG 0.537066 1_1:-56257131 None:intergenic
GTTTACAAAGAAGCTTGCTA+TGG 0.539191 1_1:+56262292 Msa0030180:three_prime_UTR
TCGCATAAAGCAGATATTGT+GGG 0.539284 1_1:+56259191 Msa0030180:CDS
GGGATCTGTTGTATGAGCCT+TGG 0.542320 1_1:+56258551 Msa0030180:CDS
ATGTAACCTCCTCTGATGAT+GGG 0.543378 1_1:+56262270 Msa0030180:three_prime_UTR
CTCAAGCCATATTCAAGATG+TGG 0.544153 1_1:+56260788 Msa0030180:CDS
AAGAATAGGCAAAAGGTTGG+TGG 0.546393 1_1:+56259096 Msa0030180:CDS
GACGAGCATGGTCTCCAGGT+TGG 0.548035 1_1:+56259016 Msa0030180:CDS
GTTGGCATTCTCGCCAACTC+AGG 0.548803 1_1:-56260646 None:intergenic
TTGAAGCCTAGATATAATAT+GGG 0.550311 1_1:+56257721 Msa0030180:exon
GTGGTGCATTCCAAGGATGA+TGG 0.551180 1_1:-56260678 None:intergenic
AAGGCAATGGCTACCTGAGT+TGG 0.551193 1_1:+56260633 Msa0030180:CDS
CAATAACATGCAGTGTATGT+AGG 0.551922 1_1:-56257136 None:intergenic
TTGAATGTGATATCCTCGGC+TGG 0.555532 1_1:+56259565 Msa0030180:CDS
AGGTTGGAGCAATGCTGACA+AGG 0.556873 1_1:+56259032 Msa0030180:CDS
TGCTACTGGATTTATAGATA+AGG 0.557884 1_1:-56261575 None:intergenic
TTGGGAAGTATATGATGAGA+AGG 0.559387 1_1:+56258570 Msa0030180:CDS
ACTTGGAGACAAGGTAGGAC+TGG 0.559715 1_1:+56259384 Msa0030180:CDS
TACTTCATTCCCCATTTCCA+AGG 0.559892 1_1:-56259513 None:intergenic
AGAGCATCAGGAGTCGAGCT+AGG 0.561014 1_1:+56260712 Msa0030180:CDS
TTCTCATCATATACTTCCCA+AGG 0.561654 1_1:-56258568 None:intergenic
TGAGCGCTTGGATGATCCTG+AGG 0.562126 1_1:+56259626 Msa0030180:CDS
TTAATGTGCATACCTTCAGC+AGG 0.564087 1_1:-56258685 None:intergenic
GGATCTAGGTTTGATCCAGA+AGG 0.564228 1_1:+56260601 Msa0030180:CDS
CTGTTTCGCTTATTCCACCT+TGG 0.564355 1_1:+56258653 Msa0030180:CDS
GCAAGGAAGAGTTCCCATCA+AGG 0.565323 1_1:+56262144 Msa0030180:three_prime_UTR
GTTTATATGGTGTCCTAAAG+AGG 0.569764 1_1:+56257840 Msa0030180:CDS
ACACTAAGTGGTGCATTCCA+AGG 0.571610 1_1:-56260685 None:intergenic
TGGCAATTAATTCCTGCTGA+AGG 0.571990 1_1:+56258673 Msa0030180:CDS
TTGCTTCTACCTTGGAAATG+GGG 0.574156 1_1:+56259504 Msa0030180:CDS
GACCTTGAATGTGATATCCT+CGG 0.577392 1_1:+56259561 Msa0030180:CDS
AGCTAATGATCAGAAAGTGC+CGG 0.577971 1_1:+56260936 Msa0030180:CDS
CTCGCATAAAGCAGATATTG+TGG 0.579056 1_1:+56259190 Msa0030180:CDS
CCAATGATGAGTTCCCATCA+AGG 0.579073 1_1:-56262062 None:intergenic
AAACTTGTGAAAGGGACATG+TGG 0.579526 1_1:+56257416 Msa0030180:five_prime_UTR
TCAAGCCATATTCAAGATGT+GGG 0.581508 1_1:+56260789 Msa0030180:CDS
TACATAGTCAAAGTCTACAT+TGG 0.582002 1_1:+56261993 Msa0030180:three_prime_UTR
AGCTTGCTATGGAAATTCTA+GGG 0.582029 1_1:+56262303 Msa0030180:three_prime_UTR
TAGCAAAGTAGTATGCAAGT+TGG 0.582266 1_1:+56257472 Msa0030180:five_prime_UTR
CTTTGTAAACCCATCATCAG+AGG 0.583687 1_1:-56262279 None:intergenic
AAGGAGAATATGTAAGGCAA+TGG 0.584996 1_1:+56260620 Msa0030180:CDS
CAGATATTGTGGGGAAACGA+AGG 0.585311 1_1:+56259201 Msa0030180:CDS
ATCAGAGGAGGTTACATCCA+AGG 0.587071 1_1:-56262264 None:intergenic
CAAGAGATCCATGCAGTGGA+GGG 0.587364 1_1:+56262522 Msa0030180:three_prime_UTR
GAGAACTTTGGGCTACAGGA+TGG 0.589010 1_1:+56259433 Msa0030180:CDS
GGATGATGGATCCACTCAGT+TGG 0.589489 1_1:-56260664 None:intergenic
TCCAAGAATAGGCAAAAGGT+TGG 0.591255 1_1:+56259093 Msa0030180:CDS
AGTGCTCTCTCATGAGTGAA+CGG 0.592898 1_1:-56259309 None:intergenic
AAGTAAATAATATACAATGT+TGG 0.593090 1_1:-56261695 None:intergenic
TCACAGCCTGAAAGGGTGCA+AGG 0.598339 1_1:+56262127 Msa0030180:three_prime_UTR
GATGCTCTAAGCACACTAAG+TGG 0.600085 1_1:-56260697 None:intergenic
GGAAACGAAGGCAACAGTGT+TGG 0.600244 1_1:+56259213 Msa0030180:CDS
ATACTACTTTGCTATCTGGA+AGG 0.601501 1_1:-56257463 None:intergenic
CTGAGATATACTGCCAGCCG+AGG 0.601742 1_1:-56259578 None:intergenic
GTAGTGTCCCTATAGATTGG+TGG 0.603110 1_1:+56262203 Msa0030180:three_prime_UTR
TTTGACGGATCAGCATTCCA+AGG 0.608296 1_1:-56259354 None:intergenic
TCAAGACTTGGAGACAAGGT+AGG 0.609400 1_1:+56259379 Msa0030180:CDS
TCAGCAGGAATTAATTGCCA+AGG 0.610860 1_1:-56258670 None:intergenic
TTTCATGCAGGGGCGACAGG+AGG 0.611889 1_1:+56261542 Msa0030180:intron
ATATGGTGTCCTAAAGAGGA+AGG 0.616143 1_1:+56257844 Msa0030180:CDS
TTAGGACACCATATAAACAC+AGG 0.616586 1_1:-56257835 None:intergenic
TTGACGGATCAGCATTCCAA+GGG 0.619378 1_1:-56259353 None:intergenic
AACTTCAAGACTTGGAGACA+AGG 0.622090 1_1:+56259375 Msa0030180:CDS
CGCATAAAGCAGATATTGTG+GGG 0.626353 1_1:+56259192 Msa0030180:CDS
AGCACTACTTACCATAGAGA+TGG 0.626546 1_1:-56258038 None:intergenic
CAACATCAAAGAAAAGCTAG+TGG 0.627181 1_1:+56258498 Msa0030180:CDS
ATCTCAGGATGCTTACCAGA+CGG 0.628095 1_1:+56259594 Msa0030180:CDS
TGTAAACCCATCATCAGAGG+AGG 0.632539 1_1:-56262276 None:intergenic
TTCTCACTAGGCATAAGTCA+TGG 0.633959 1_1:+56261796 Msa0030180:three_prime_UTR
ATCAGTGAAAAGCTATAATG+GGG 0.635939 1_1:+56258531 Msa0030180:CDS
GTCCCTTCTAAACCAAACAA+TGG 0.637331 1_1:-56257755 None:intergenic
GTTCACAAGTGTTTATCACC+GGG 0.640346 1_1:-56262345 None:intergenic
TTAAATGTAATCATATATGT+CGG 0.641334 1_1:+56261908 Msa0030180:three_prime_UTR
GGATCTCTTGTTGTAAACGT+TGG 0.641567 1_1:-56262509 None:intergenic
ACGCGTTACTAGGACGAGCA+TGG 0.642349 1_1:+56259004 Msa0030180:CDS
GCAGGAATTAATTGCCAAGG+TGG 0.644364 1_1:-56258667 None:intergenic
AATGTAATCATATATGTCGG+TGG 0.647016 1_1:+56261911 Msa0030180:three_prime_UTR
GTGGAGAAGATCACATGTCA+AGG 0.648414 1_1:-56257048 None:intergenic
ACAAGAGATCCATGCAGTGG+AGG 0.649604 1_1:+56262521 Msa0030180:three_prime_UTR
TTAGCTGAAATAGTAGCAGA+CGG 0.651586 1_1:-56260919 None:intergenic
AACTTGTGAAAGGGACATGT+GGG 0.652408 1_1:+56257417 Msa0030180:five_prime_UTR
TGGGAAGTATATGATGAGAA+GGG 0.652926 1_1:+56258571 Msa0030180:CDS
TGGCGAGAATGCCAACTGAG+TGG 0.660213 1_1:+56260653 Msa0030180:CDS
ATTTCGGAGAGTTGAGTGTG+AGG 0.666895 1_1:+56259151 Msa0030180:CDS
ACAACAAGAGATCCATGCAG+TGG 0.685539 1_1:+56262518 Msa0030180:three_prime_UTR
CTCTCCGAAATGGAGATACG+GGG 0.691586 1_1:-56259139 None:intergenic
ATCCAGGAAGAGTTTCAAGG+TGG 0.698355 1_1:+56257875 Msa0030180:CDS
ATATGATTGAGTGTGTGTGA+AGG 0.699895 1_1:-56257094 None:intergenic
ATACGGGGATAACAGCGAGG+TGG 0.704873 1_1:-56259124 None:intergenic
GACGATAAATTATTCTCACT+AGG 0.709024 1_1:+56261784 Msa0030180:three_prime_UTR
TAGGACACCATATAAACACA+GGG 0.720737 1_1:-56257834 None:intergenic
GAGATACGGGGATAACAGCG+AGG 0.744456 1_1:-56259127 None:intergenic
ATTAGTGTATGATGATCACG+TGG 0.765451 1_1:-56257067 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTATGTTTCTAAATTA+GGG + chr1_1:56257351-56257370 Msa0030180:five_prime_UTR 10.0%
!! AAAATACACAAAAAAAAATA+TGG - chr1_1:56257381-56257400 None:intergenic 10.0%
!!! GTTAATTATGTTTCTAAATT+AGG + chr1_1:56257350-56257369 Msa0030180:five_prime_UTR 15.0%
!!! TTCATTTATAGTATAGTTTT+TGG + chr1_1:56258724-56258743 Msa0030180:intron 15.0%
!! TGAATAAATTATTGAATACA+GGG - chr1_1:56259704-56259723 None:intergenic 15.0%
!! TTGAATAAATTATTGAATAC+AGG - chr1_1:56259705-56259724 None:intergenic 15.0%
!! GCTTATAACATATATTAAAA+TGG - chr1_1:56260283-56260302 None:intergenic 15.0%
!! AAGTAAATAATATACAATGT+TGG - chr1_1:56261698-56261717 None:intergenic 15.0%
!! TTAAATGTAATCATATATGT+CGG + chr1_1:56261908-56261927 Msa0030180:three_prime_UTR 15.0%
!! ATAAGTATTAAGAATAAGAT+TGG - chr1_1:56262101-56262120 None:intergenic 15.0%
!!! CTTATCTAAGTTGAAAATAA+GGG - chr1_1:56257199-56257218 None:intergenic 20.0%
!!! TCTTATCTAAGTTGAAAATA+AGG - chr1_1:56257200-56257219 None:intergenic 20.0%
!! AAAATTGATACACTAAAAAC+TGG - chr1_1:56257622-56257641 None:intergenic 20.0%
!!! AAACCATTTTTAAACTTTTG+AGG + chr1_1:56257670-56257689 Msa0030180:five_prime_UTR 20.0%
!!! TTTGGTTACACTTAATATTT+TGG + chr1_1:56258137-56258156 Msa0030180:intron 20.0%
!!! TTTTTCTATTAGTAACATAG+AGG + chr1_1:56258189-56258208 Msa0030180:intron 20.0%
!!! TAGATAATAGCTTTTATATC+TGG + chr1_1:56259880-56259899 Msa0030180:intron 20.0%
!! TAAAATTTCAAAGTACAAAC+TGG - chr1_1:56260007-56260026 None:intergenic 20.0%
!!! TATAGGAAACAAGTTTTATT+AGG + chr1_1:56260481-56260500 Msa0030180:intron 20.0%
!! TCTATATCAATTATTGGATT+CGG - chr1_1:56260748-56260767 None:intergenic 20.0%
!! TCCAATAATTGATATAGATA+TGG + chr1_1:56260750-56260769 Msa0030180:CDS 20.0%
!!! ATCCTTAGGTTTATTTTTTT+AGG + chr1_1:56261359-56261378 Msa0030180:intron 20.0%
!!! TCCTTAGGTTTATTTTTTTA+GGG + chr1_1:56261360-56261379 Msa0030180:intron 20.0%
!! CAAGACTATCAAAATATTTA+AGG - chr1_1:56261736-56261755 None:intergenic 20.0%
! CCAAAATCTTATCAAAGAAA+AGG - chr1_1:56257165-56257184 None:intergenic 25.0%
!! CCTTTTCTTTGATAAGATTT+TGG + chr1_1:56257162-56257181 Msa0030180:five_prime_UTR 25.0%
! ATAAGCTATAAGTACTTGTT+AGG + chr1_1:56257503-56257522 Msa0030180:five_prime_UTR 25.0%
! TCACCTCAAAAGTTTAAAAA+TGG - chr1_1:56257676-56257695 None:intergenic 25.0%
!! TTTGAAGCCTAGATATAATA+TGG + chr1_1:56257720-56257739 Msa0030180:exon 25.0%
! TTGAAGCCTAGATATAATAT+GGG + chr1_1:56257721-56257740 Msa0030180:exon 25.0%
!!! GATTTGATTTGATTCATGTT+TGG + chr1_1:56258119-56258138 Msa0030180:intron 25.0%
! ATGTTACTAATAGAAAAAGC+CGG - chr1_1:56258187-56258206 None:intergenic 25.0%
! TTATCAGTGAAAAGCTATAA+TGG + chr1_1:56258529-56258548 Msa0030180:CDS 25.0%
! TATCAGTGAAAAGCTATAAT+GGG + chr1_1:56258530-56258549 Msa0030180:CDS 25.0%
!!! TATAGTTTTTGGTTCTACAT+TGG + chr1_1:56258735-56258754 Msa0030180:intron 25.0%
!! AAAAGATGATACTTTCGTTT+TGG - chr1_1:56258851-56258870 None:intergenic 25.0%
! TTGCTGTATCATAATAACTA+TGG - chr1_1:56258888-56258907 None:intergenic 25.0%
! AAATGTTCAATAGAGGATTT+AGG + chr1_1:56258952-56258971 Msa0030180:CDS 25.0%
! TTGAAACTATAACTCTGATT+CGG - chr1_1:56259467-56259486 None:intergenic 25.0%
! ATAAATTATTGAATACAGGG+TGG - chr1_1:56259701-56259720 None:intergenic 25.0%
! CAAATTAGATATTTAACGAG+CGG - chr1_1:56259935-56259954 None:intergenic 25.0%
!!! TTGCTTTTAACACAGATTAT+TGG + chr1_1:56259952-56259971 Msa0030180:intron 25.0%
! TAAGTTCGTTTATTCAAACA+GGG - chr1_1:56260175-56260194 None:intergenic 25.0%
!!! GGTATTACTTTTTCGTATAT+AGG + chr1_1:56260464-56260483 Msa0030180:intron 25.0%
! GCCATATCTATATCAATTAT+TGG - chr1_1:56260754-56260773 None:intergenic 25.0%
! TCCCTAAAAAAATAAACCTA+AGG - chr1_1:56261364-56261383 None:intergenic 25.0%
!! AAGAATTTTCATTTTCATGC+AGG + chr1_1:56261530-56261549 Msa0030180:intron 25.0%
!! AGAATTTTCATTTTCATGCA+GGG + chr1_1:56261531-56261550 Msa0030180:intron 25.0%
! TGGCTATATTCTCAATAAAA+TGG + chr1_1:56261648-56261667 Msa0030180:three_prime_UTR 25.0%
! ATATTTAAGGACTTCTCATT+CGG - chr1_1:56261723-56261742 None:intergenic 25.0%
!! CATTTTCGTATATGAAGTAT+CGG + chr1_1:56261967-56261986 Msa0030180:three_prime_UTR 25.0%
! TTGGCACATTATTATACAAA+AGG - chr1_1:56262170-56262189 None:intergenic 25.0%
!!! CTATATTTTTGGATAAAACC+CGG + chr1_1:56262327-56262346 Msa0030180:three_prime_UTR 25.0%
CAAACTTGAGAACTAAGATA+AGG - chr1_1:56257264-56257283 None:intergenic 30.0%
TTGCTACCCATATTATATCT+AGG - chr1_1:56257730-56257749 None:intergenic 30.0%
! AACCATTGTTTGGTTTAGAA+GGG + chr1_1:56257753-56257772 Msa0030180:CDS 30.0%
TAAAATTGTCCTTCCTCTTT+AGG - chr1_1:56257856-56257875 None:intergenic 30.0%
GTAAAATGCTGGATTCTTAT+TGG + chr1_1:56258282-56258301 Msa0030180:intron 30.0%
GAACTGTAAAGAAACATATC+AGG - chr1_1:56258406-56258425 None:intergenic 30.0%
ACAATCATGGTACAAAATGT+TGG - chr1_1:56258445-56258464 None:intergenic 30.0%
AGGATCTGATAAAACAATCA+TGG - chr1_1:56258458-56258477 None:intergenic 30.0%
ATCAGTGAAAAGCTATAATG+GGG + chr1_1:56258531-56258550 Msa0030180:CDS 30.0%
AGTAAGTTAGTAGTTGTGTT+GGG - chr1_1:56258815-56258834 None:intergenic 30.0%
TAGTAAGTTAGTAGTTGTGT+TGG - chr1_1:56258816-56258835 None:intergenic 30.0%
!! ATGATACTTTCGTTTTGGAT+AGG - chr1_1:56258846-56258865 None:intergenic 30.0%
AGTCAAGAAATGTTCAATAG+AGG + chr1_1:56258945-56258964 Msa0030180:CDS 30.0%
! CAAGGCTTTAACAGAATTTA+TGG + chr1_1:56259050-56259069 Msa0030180:CDS 30.0%
!! TGTGAGGAAAGTTTTTCAAA+TGG + chr1_1:56259167-56259186 Msa0030180:CDS 30.0%
TCCAATCAACTGCATAAATT+TGG + chr1_1:56259842-56259861 Msa0030180:intron 30.0%
ACCAAATTTATGCAGTTGAT+TGG - chr1_1:56259846-56259865 None:intergenic 30.0%
CAACTATTATAGTCATGCTA+AGG - chr1_1:56260115-56260134 None:intergenic 30.0%
GTAAGTTCGTTTATTCAAAC+AGG - chr1_1:56260176-56260195 None:intergenic 30.0%
!! GCTATTTTCGTAAACTATCT+TGG + chr1_1:56260301-56260320 Msa0030180:intron 30.0%
AAACTATCTTGGAGATCTTA+TGG + chr1_1:56260312-56260331 Msa0030180:intron 30.0%
! AATGAACAGATAACAGCTTT+TGG + chr1_1:56260336-56260355 Msa0030180:intron 30.0%
! AGATTGTTTGGGATAGATTT+CGG - chr1_1:56260380-56260399 None:intergenic 30.0%
AGTAATACCAATCTCACTTA+GGG - chr1_1:56260453-56260472 None:intergenic 30.0%
AAGTAATACCAATCTCACTT+AGG - chr1_1:56260454-56260473 None:intergenic 30.0%
!! GTTTTATTAGGTTTGTTCGT+TGG + chr1_1:56260493-56260512 Msa0030180:intron 30.0%
! TAGCGTGATTTCTCTAATTT+TGG + chr1_1:56260555-56260574 Msa0030180:intron 30.0%
! TCATTGTTTGTCCAGATTTT+AGG + chr1_1:56260580-56260599 Msa0030180:intron 30.0%
AATTTCCCACATCTTGAATA+TGG - chr1_1:56260797-56260816 None:intergenic 30.0%
CTAATAGGTAGTTCATTCTT+GGG - chr1_1:56260973-56260992 None:intergenic 30.0%
! CATTTTGTTCTCTTCCTAAT+AGG - chr1_1:56260988-56261007 None:intergenic 30.0%
ACTATCTTTCACATGATTCA+CGG - chr1_1:56261043-56261062 None:intergenic 30.0%
TTGTGGAACAGAAAATGAAT+AGG - chr1_1:56261142-56261161 None:intergenic 30.0%
! CCATTTTAGATTTGAAGATG+AGG - chr1_1:56261172-56261191 None:intergenic 30.0%
CCTCATCTTCAAATCTAAAA+TGG + chr1_1:56261169-56261188 Msa0030180:intron 30.0%
!! AGTTACTTCTATTTTTCTCG+TGG - chr1_1:56261304-56261323 None:intergenic 30.0%
ACCTAAGGATTAAATTGTCT+CGG - chr1_1:56261349-56261368 None:intergenic 30.0%
! AAGAGTGAAGACTCATTTTA+GGG - chr1_1:56261248-56261267 None:intergenic 30.0%
! AAAGAGTGAAGACTCATTTT+AGG - chr1_1:56261414-56261433 None:intergenic 30.0%
ATCACTGTGTTTCATAATGA+GGG + chr1_1:56261454-56261473 Msa0030180:intron 30.0%
!!! CACTCTTTTTTACACTTTGT+TGG + chr1_1:56261487-56261506 Msa0030180:intron 30.0%
! GAATTTTCATTTTCATGCAG+GGG + chr1_1:56261532-56261551 Msa0030180:intron 30.0%
TGCTACTGGATTTATAGATA+AGG - chr1_1:56261578-56261597 None:intergenic 30.0%
CACAGAAAACAGTTCATTTA+TGG - chr1_1:56261630-56261649 None:intergenic 30.0%
! CATAAATGAACTGTTTTCTG+TGG + chr1_1:56261628-56261647 Msa0030180:exon 30.0%
!! TCGTCTACTAGATTAGTTTA+TGG - chr1_1:56261769-56261788 None:intergenic 30.0%
GACGATAAATTATTCTCACT+AGG + chr1_1:56261784-56261803 Msa0030180:three_prime_UTR 30.0%
ATATGCATCAAGTTCCAAAA+AGG - chr1_1:56261830-56261849 None:intergenic 30.0%
AATGTAATCATATATGTCGG+TGG + chr1_1:56261911-56261930 Msa0030180:three_prime_UTR 30.0%
TACATAGTCAAAGTCTACAT+TGG + chr1_1:56261993-56262012 Msa0030180:three_prime_UTR 30.0%
!! ATTTTATTTCACAGCCTGAA+AGG + chr1_1:56262119-56262138 Msa0030180:three_prime_UTR 30.0%
!! TTTTATTTCACAGCCTGAAA+GGG + chr1_1:56262120-56262139 Msa0030180:three_prime_UTR 30.0%
ATTATACAAAAGGCCTTGAT+GGG - chr1_1:56262160-56262179 None:intergenic 30.0%
TATTATACAAAAGGCCTTGA+TGG - chr1_1:56262161-56262180 None:intergenic 30.0%
AGAAAATCCACCAATCTATA+GGG - chr1_1:56262213-56262232 None:intergenic 30.0%
AAGAAAATCCACCAATCTAT+AGG - chr1_1:56262214-56262233 None:intergenic 30.0%
TCTGATAGCAATTCCTTTAT+TGG + chr1_1:56262233-56262252 Msa0030180:three_prime_UTR 30.0%
!!! AATTCTAGGGCCTATATTTT+TGG + chr1_1:56262316-56262335 Msa0030180:three_prime_UTR 30.0%
!! CGGGTTTTATCCAAAAATAT+AGG - chr1_1:56262329-56262348 None:intergenic 30.0%
!! TCATTTGTTATAAGCTGCAA+AGG + chr1_1:56262371-56262390 Msa0030180:intron 30.0%
ATTAGTGTATGATGATCACG+TGG - chr1_1:56257070-56257089 None:intergenic 35.0%
ATATGATTGAGTGTGTGTGA+AGG - chr1_1:56257097-56257116 None:intergenic 35.0%
TGTATGTAGGAATGGAAGAT+AGG - chr1_1:56257126-56257145 None:intergenic 35.0%
CAATAACATGCAGTGTATGT+AGG - chr1_1:56257139-56257158 None:intergenic 35.0%
ATGCCTTCAAACTTGTGAAA+GGG + chr1_1:56257408-56257427 Msa0030180:five_prime_UTR 35.0%
! ATACTACTTTGCTATCTGGA+AGG - chr1_1:56257466-56257485 None:intergenic 35.0%
! TTGCATACTACTTTGCTATC+TGG - chr1_1:56257470-56257489 None:intergenic 35.0%
TAGCAAAGTAGTATGCAAGT+TGG + chr1_1:56257472-56257491 Msa0030180:five_prime_UTR 35.0%
! CTATTTTCAGCAGTGATTTG+AGG + chr1_1:56257527-56257546 Msa0030180:five_prime_UTR 35.0%
TAAAAACTGGCTACAAAGGT+TGG - chr1_1:56257609-56257628 None:intergenic 35.0%
ACACTAAAAACTGGCTACAA+AGG - chr1_1:56257613-56257632 None:intergenic 35.0%
GTAGCAATAGAACCATTGTT+TGG + chr1_1:56257743-56257762 Msa0030180:CDS 35.0%
! GAACCATTGTTTGGTTTAGA+AGG + chr1_1:56257752-56257771 Msa0030180:CDS 35.0%
CTGTATTCCCTGTGTTTATA+TGG + chr1_1:56257827-56257846 Msa0030180:CDS 35.0%
TAGGACACCATATAAACACA+GGG - chr1_1:56257837-56257856 None:intergenic 35.0%
TTAGGACACCATATAAACAC+AGG - chr1_1:56257838-56257857 None:intergenic 35.0%
GTTTATATGGTGTCCTAAAG+AGG + chr1_1:56257840-56257859 Msa0030180:CDS 35.0%
TTTATCCAGGAAGAGTTTCA+AGG + chr1_1:56257872-56257891 Msa0030180:CDS 35.0%
GTTGTGTTTAACCATCTCTA+TGG + chr1_1:56258027-56258046 Msa0030180:CDS 35.0%
!! TGGTAAGTAGTGCTGTTTAT+AGG + chr1_1:56258047-56258066 Msa0030180:intron 35.0%
CAAAAGTTGAAGAATCAAGC+CGG + chr1_1:56258165-56258184 Msa0030180:intron 35.0%
GTTATGTGTGGCAAAATGAA+GGG - chr1_1:56258261-56258280 None:intergenic 35.0%
AGTTATGTGTGGCAAAATGA+AGG - chr1_1:56258262-56258281 None:intergenic 35.0%
! CAGCATTTTACAGTTATGTG+TGG - chr1_1:56258273-56258292 None:intergenic 35.0%
CACACATAACTGTAAAATGC+TGG + chr1_1:56258271-56258290 Msa0030180:intron 35.0%
TTTATCAGATCCTGTTTCAC+TGG + chr1_1:56258465-56258484 Msa0030180:intron 35.0%
!! CTAGCTTTTCTTTGATGTTG+TGG - chr1_1:56258498-56258517 None:intergenic 35.0%
CAACATCAAAGAAAAGCTAG+TGG + chr1_1:56258498-56258517 Msa0030180:CDS 35.0%
AAAGAAAAGCTAGTGGAACT+TGG + chr1_1:56258505-56258524 Msa0030180:CDS 35.0%
TTCTCATCATATACTTCCCA+AGG - chr1_1:56258571-56258590 None:intergenic 35.0%
! TTGGGAAGTATATGATGAGA+AGG + chr1_1:56258570-56258589 Msa0030180:CDS 35.0%
! TGGGAAGTATATGATGAGAA+GGG + chr1_1:56258571-56258590 Msa0030180:CDS 35.0%
! TTACAACCTTCGATCCTTTT+TGG + chr1_1:56258602-56258621 Msa0030180:CDS 35.0%
!! TTCTACATTGGTAGCTTTGT+TGG + chr1_1:56258747-56258766 Msa0030180:intron 35.0%
TACTTCACTACTCCAAGAAT+AGG + chr1_1:56259082-56259101 Msa0030180:CDS 35.0%
TCGCATAAAGCAGATATTGT+GGG + chr1_1:56259191-56259210 Msa0030180:CDS 35.0%
TCATTCCTGCATCAACTAAA+GGG - chr1_1:56259413-56259432 None:intergenic 35.0%
! TGAAAATGTTGCTTCTACCT+TGG + chr1_1:56259496-56259515 Msa0030180:CDS 35.0%
! AATGGGGAATGAAGTATTTC+TGG + chr1_1:56259520-56259539 Msa0030180:CDS 35.0%
! ATGGGGAATGAAGTATTTCT+GGG + chr1_1:56259521-56259540 Msa0030180:CDS 35.0%
AAAAATTGGCACATGAGGAT+GGG - chr1_1:56259803-56259822 None:intergenic 35.0%
ATCTCAAAAATTGGCACATG+AGG - chr1_1:56259808-56259827 None:intergenic 35.0%
!!! ATGTGCCAATTTTTGAGATC+TGG + chr1_1:56259809-56259828 Msa0030180:intron 35.0%
!!! TGTGCCAATTTTTGAGATCT+GGG + chr1_1:56259810-56259829 Msa0030180:intron 35.0%
GCGGTGAAGTTTAATATGAA+AGG - chr1_1:56259916-56259935 None:intergenic 35.0%
AAGCACTTGTGAGATTGTTT+GGG - chr1_1:56260391-56260410 None:intergenic 35.0%
TAAGCACTTGTGAGATTGTT+TGG - chr1_1:56260392-56260411 None:intergenic 35.0%
!! TCTTGTTGTGAGGATCTTTT+TGG - chr1_1:56260530-56260549 None:intergenic 35.0%
!!! TTGTCCAGATTTTAGGATCT+AGG + chr1_1:56260587-56260606 Msa0030180:intron 35.0%
CAAACCTAGATCCTAAAATC+TGG - chr1_1:56260594-56260613 None:intergenic 35.0%
ATCCAGAAGGAGAATATGTA+AGG + chr1_1:56260614-56260633 Msa0030180:CDS 35.0%
AAGGAGAATATGTAAGGCAA+TGG + chr1_1:56260620-56260639 Msa0030180:CDS 35.0%
TCAAGCCATATTCAAGATGT+GGG + chr1_1:56260789-56260808 Msa0030180:CDS 35.0%
TTAGCTGAAATAGTAGCAGA+CGG - chr1_1:56260922-56260941 None:intergenic 35.0%
CCTAATAGGTAGTTCATTCT+TGG - chr1_1:56260974-56260993 None:intergenic 35.0%
CCAAGAATGAACTACCTATT+AGG + chr1_1:56260971-56260990 Msa0030180:CDS 35.0%
TGAAGAGAAGAGAAAGAACA+AGG + chr1_1:56261011-56261030 Msa0030180:CDS 35.0%
! CTTCAAATCTAAAATGGCCA+TGG + chr1_1:56261175-56261194 Msa0030180:intron 35.0%
!! GTCTCGGTTTATTTTCTTCA+TGG - chr1_1:56261333-56261352 None:intergenic 35.0%
ACCGAGACAATTTAATCCTT+AGG + chr1_1:56261345-56261364 Msa0030180:intron 35.0%
!!! GAAGTTGCGTTATTTTTCTC+AGG + chr1_1:56261387-56261406 Msa0030180:intron 35.0%
TCTTCACTCTTTACCATCAT+AGG + chr1_1:56261422-56261441 Msa0030180:intron 35.0%
TGATGTAGAAAGTCCTATGA+TGG - chr1_1:56261438-56261457 None:intergenic 35.0%
CATCACTGTGTTTCATAATG+AGG + chr1_1:56261453-56261472 Msa0030180:intron 35.0%
! TCATGGTGCTTTTACCTTTT+TGG + chr1_1:56261813-56261832 Msa0030180:three_prime_UTR 35.0%
TTGGAACTTGATGCATATGA+AGG + chr1_1:56261832-56261851 Msa0030180:three_prime_UTR 35.0%
GACATGTATACATGCTAGTA+AGG + chr1_1:56261875-56261894 Msa0030180:three_prime_UTR 35.0%
ATTCCTTTATTGAGCCTTGA+TGG + chr1_1:56262048-56262067 Msa0030180:three_prime_UTR 35.0%
TTCCTTTATTGAGCCTTGAT+GGG + chr1_1:56262049-56262068 Msa0030180:three_prime_UTR 35.0%
! CACTACTTTGAAAGAAGTCT+TGG - chr1_1:56262189-56262208 None:intergenic 35.0%
AAAGTAGTGTCCCTATAGAT+TGG + chr1_1:56262200-56262219 Msa0030180:three_prime_UTR 35.0%
!! GTTTACAAAGAAGCTTGCTA+TGG + chr1_1:56262292-56262311 Msa0030180:three_prime_UTR 35.0%
!! AAGCTTGCTATGGAAATTCT+AGG + chr1_1:56262302-56262321 Msa0030180:three_prime_UTR 35.0%
!! AGCTTGCTATGGAAATTCTA+GGG + chr1_1:56262303-56262322 Msa0030180:three_prime_UTR 35.0%
TGTTCACAAGTGTTTATCAC+CGG - chr1_1:56262349-56262368 None:intergenic 35.0%
AGATCACATGTCAAGGAGAA+AGG - chr1_1:56257044-56257063 None:intergenic 40.0%
ACATGCAGTGTATGTAGGAA+TGG - chr1_1:56257134-56257153 None:intergenic 40.0%
GATGCCTTCAAACTTGTGAA+AGG + chr1_1:56257407-56257426 Msa0030180:five_prime_UTR 40.0%
TGTCCCTTTCACAAGTTTGA+AGG - chr1_1:56257414-56257433 None:intergenic 40.0%
AAACTTGTGAAAGGGACATG+TGG + chr1_1:56257416-56257435 Msa0030180:five_prime_UTR 40.0%
AACTTGTGAAAGGGACATGT+GGG + chr1_1:56257417-56257436 Msa0030180:five_prime_UTR 40.0%
GTCCCTTCTAAACCAAACAA+TGG - chr1_1:56257758-56257777 None:intergenic 40.0%
TAGAAGGGACCTTAGAATTG+AGG + chr1_1:56257768-56257787 Msa0030180:CDS 40.0%
CTGGATTGTCCTCAATTCTA+AGG - chr1_1:56257780-56257799 None:intergenic 40.0%
ATATGGTGTCCTAAAGAGGA+AGG + chr1_1:56257844-56257863 Msa0030180:CDS 40.0%
! GAGGAAGGACAATTTTATCC+AGG + chr1_1:56257859-56257878 Msa0030180:CDS 40.0%
! GAAGCAGTCTTTAGTTCACT+TGG + chr1_1:56257903-56257922 Msa0030180:CDS 40.0%
GATCAGTCCTTGAAATCACT+TGG + chr1_1:56257925-56257944 Msa0030180:CDS 40.0%
TCTCGAACCAAGTGATTTCA+AGG - chr1_1:56257935-56257954 None:intergenic 40.0%
AGCACTACTTACCATAGAGA+TGG - chr1_1:56258041-56258060 None:intergenic 40.0%
! CGGCTTGATTCTTCAACTTT+TGG - chr1_1:56258167-56258186 None:intergenic 40.0%
GCAAAATGAAGGGTTCTCAT+CGG - chr1_1:56258251-56258270 None:intergenic 40.0%
TCCAGTAACGTTAAGCGAAA+GGG - chr1_1:56258347-56258366 None:intergenic 40.0%
TTCCAGTAACGTTAAGCGAA+AGG - chr1_1:56258348-56258367 None:intergenic 40.0%
TCAGCAGGAATTAATTGCCA+AGG - chr1_1:56258673-56258692 None:intergenic 40.0%
TGGCAATTAATTCCTGCTGA+AGG + chr1_1:56258673-56258692 Msa0030180:CDS 40.0%
TTAATGTGCATACCTTCAGC+AGG - chr1_1:56258688-56258707 None:intergenic 40.0%
! CTGAAGGTATGCACATTAAC+AGG + chr1_1:56258689-56258708 Msa0030180:intron 40.0%
CCTCTGTCGTAAAACTTCTT+TGG - chr1_1:56258786-56258805 None:intergenic 40.0%
! CCAAAGAAGTTTTACGACAG+AGG + chr1_1:56258783-56258802 Msa0030180:intron 40.0%
! AGAAGTTTTACGACAGAGGT+CGG + chr1_1:56258787-56258806 Msa0030180:intron 40.0%
TCTCTTCTGCTGTGTATTAC+AGG + chr1_1:56258919-56258938 Msa0030180:intron 40.0%
CTACTCCAAGAATAGGCAAA+AGG + chr1_1:56259089-56259108 Msa0030180:CDS 40.0%
TCCAAGAATAGGCAAAAGGT+TGG + chr1_1:56259093-56259112 Msa0030180:CDS 40.0%
! ACCAACCTTTTGCCTATTCT+TGG - chr1_1:56259097-56259116 None:intergenic 40.0%
AAGAATAGGCAAAAGGTTGG+TGG + chr1_1:56259096-56259115 Msa0030180:CDS 40.0%
TTATCCCCGTATCTCCATTT+CGG + chr1_1:56259135-56259154 Msa0030180:CDS 40.0%
AACTCTCCGAAATGGAGATA+CGG - chr1_1:56259144-56259163 None:intergenic 40.0%
CTCGCATAAAGCAGATATTG+TGG + chr1_1:56259190-56259209 Msa0030180:CDS 40.0%
CGCATAAAGCAGATATTGTG+GGG + chr1_1:56259192-56259211 Msa0030180:CDS 40.0%
! GCTCTTTTCCTTAGAGCAAT+TGG + chr1_1:56259249-56259268 Msa0030180:CDS 40.0%
CTCTTAGTCCAATTGCTCTA+AGG - chr1_1:56259260-56259279 None:intergenic 40.0%
!!! GACACTTGAGTTTTTTCCCT+TGG + chr1_1:56259337-56259356 Msa0030180:CDS 40.0%
ATCCGTCAAACTTCAAGACT+TGG + chr1_1:56259367-56259386 Msa0030180:CDS 40.0%
CTCCAAGTCTTGAAGTTTGA+CGG - chr1_1:56259372-56259391 None:intergenic 40.0%
AACTTCAAGACTTGGAGACA+AGG + chr1_1:56259375-56259394 Msa0030180:CDS 40.0%
CTCATTCCTGCATCAACTAA+AGG - chr1_1:56259414-56259433 None:intergenic 40.0%
ATGCAGGAATGAGAGAACTT+TGG + chr1_1:56259421-56259440 Msa0030180:CDS 40.0%
TGCAGGAATGAGAGAACTTT+GGG + chr1_1:56259422-56259441 Msa0030180:CDS 40.0%
! TGTTGCTTCTACCTTGGAAA+TGG + chr1_1:56259502-56259521 Msa0030180:CDS 40.0%
GTTGCTTCTACCTTGGAAAT+GGG + chr1_1:56259503-56259522 Msa0030180:CDS 40.0%
TTGCTTCTACCTTGGAAATG+GGG + chr1_1:56259504-56259523 Msa0030180:CDS 40.0%
TACTTCATTCCCCATTTCCA+AGG - chr1_1:56259516-56259535 None:intergenic 40.0%
GACCTTGAATGTGATATCCT+CGG + chr1_1:56259561-56259580 Msa0030180:CDS 40.0%
AGAAAAACGTGACAAACCTC+AGG - chr1_1:56259645-56259664 None:intergenic 40.0%
CAGAATGTGATGTGTGATAC+AGG - chr1_1:56259733-56259752 None:intergenic 40.0%
CAAAAATTGGCACATGAGGA+TGG - chr1_1:56259804-56259823 None:intergenic 40.0%
ACCACCCAGATCTCAAAAAT+TGG - chr1_1:56259817-56259836 None:intergenic 40.0%
CTTAGATGCATTTCCCTCTT+AGG + chr1_1:56260149-56260168 Msa0030180:intron 40.0%
TATTCAAACAGGGCCTAAGA+GGG - chr1_1:56260165-56260184 None:intergenic 40.0%
TTATTCAAACAGGGCCTAAG+AGG - chr1_1:56260166-56260185 None:intergenic 40.0%
! ACAGCTTTTGGACATGTCAT+AGG + chr1_1:56260348-56260367 Msa0030180:intron 40.0%
AATCTCACTTAGGGACTGTT+TGG - chr1_1:56260444-56260463 None:intergenic 40.0%
AAACAGTCCCTAAGTGAGAT+TGG + chr1_1:56260443-56260462 Msa0030180:intron 40.0%
! CGCTATTTACTCTTGTTGTG+AGG - chr1_1:56260540-56260559 None:intergenic 40.0%
TGCCTTACATATTCTCCTTC+TGG - chr1_1:56260619-56260638 None:intergenic 40.0%
TCTTGAATATGGCTTGAGTC+AGG - chr1_1:56260786-56260805 None:intergenic 40.0%
CTCAAGCCATATTCAAGATG+TGG + chr1_1:56260788-56260807 Msa0030180:CDS 40.0%
TCCAAAAGTTGTCCTCCTTA+AGG + chr1_1:56260888-56260907 Msa0030180:CDS 40.0%
! TCCTTAAGGAGGACAACTTT+TGG - chr1_1:56260892-56260911 None:intergenic 40.0%
! AGCTAATGATCAGAAAGTGC+CGG + chr1_1:56260936-56260955 Msa0030180:CDS 40.0%
GAAGATGAGGAACATTGTTG+TGG - chr1_1:56261159-56261178 None:intergenic 40.0%
!! AGAGTGTCACAGTTTTTCTC+AGG - chr1_1:56261274-56261293 None:intergenic 40.0%
CAGTGCTCATGGAAAGAAAA+TGG + chr1_1:56261602-56261621 Msa0030180:CDS 40.0%
TTCTCACTAGGCATAAGTCA+TGG + chr1_1:56261796-56261815 Msa0030180:three_prime_UTR 40.0%
TTCCCATCAAGGCTCAATAA+AGG - chr1_1:56262054-56262073 None:intergenic 40.0%
CAAGGTAGTTGCTCCAATAA+AGG - chr1_1:56262249-56262268 None:intergenic 40.0%
CTTTATTGGAGCAACTACCT+TGG + chr1_1:56262247-56262266 Msa0030180:three_prime_UTR 40.0%
ATGTAACCTCCTCTGATGAT+GGG + chr1_1:56262270-56262289 Msa0030180:three_prime_UTR 40.0%
CTTTGTAAACCCATCATCAG+AGG - chr1_1:56262282-56262301 None:intergenic 40.0%
GTTCACAAGTGTTTATCACC+GGG - chr1_1:56262348-56262367 None:intergenic 40.0%
!! AAACGTTGGTGATCTTATGC+AGG - chr1_1:56262498-56262517 None:intergenic 40.0%
! GGATCTCTTGTTGTAAACGT+TGG - chr1_1:56262512-56262531 None:intergenic 40.0%
GTGGAGAAGATCACATGTCA+AGG - chr1_1:56257051-56257070 None:intergenic 45.0%
ATCCAGGAAGAGTTTCAAGG+TGG + chr1_1:56257875-56257894 Msa0030180:CDS 45.0%
GAGTACTCTCAATGCTCTCT+TGG + chr1_1:56257975-56257994 Msa0030180:CDS 45.0%
CCAGTAACGTTAAGCGAAAG+GGG - chr1_1:56258346-56258365 None:intergenic 45.0%
GGATCTGTTGTATGAGCCTT+GGG + chr1_1:56258552-56258571 Msa0030180:CDS 45.0%
TCTCTGCCAAAAAGGATCGA+AGG - chr1_1:56258611-56258630 None:intergenic 45.0%
TGCAAGCATCTCTGCCAAAA+AGG - chr1_1:56258619-56258638 None:intergenic 45.0%
GAGATGCTTGCACAAGCAAA+TGG + chr1_1:56258627-56258646 Msa0030180:CDS 45.0%
CAAGGTGGAATAAGCGAAAC+AGG - chr1_1:56258655-56258674 None:intergenic 45.0%
CTGTTTCGCTTATTCCACCT+TGG + chr1_1:56258653-56258672 Msa0030180:CDS 45.0%
GCAGGAATTAATTGCCAAGG+TGG - chr1_1:56258670-56258689 None:intergenic 45.0%
AAACCAAGCAACGCGTTACT+AGG + chr1_1:56258994-56259013 Msa0030180:CDS 45.0%
ACTCTCCGAAATGGAGATAC+GGG - chr1_1:56259143-56259162 None:intergenic 45.0%
TCACACTCAACTCTCCGAAA+TGG - chr1_1:56259152-56259171 None:intergenic 45.0%
ATTTCGGAGAGTTGAGTGTG+AGG + chr1_1:56259151-56259170 Msa0030180:CDS 45.0%
CAGATATTGTGGGGAAACGA+AGG + chr1_1:56259201-56259220 Msa0030180:CDS 45.0%
AGTGCTCTCTCATGAGTGAA+CGG - chr1_1:56259312-56259331 None:intergenic 45.0%
!! ACTCATGAGAGAGCACTTCT+TGG + chr1_1:56259315-56259334 Msa0030180:CDS 45.0%
! TTGACGGATCAGCATTCCAA+GGG - chr1_1:56259356-56259375 None:intergenic 45.0%
! TTTGACGGATCAGCATTCCA+AGG - chr1_1:56259357-56259376 None:intergenic 45.0%
TCAAGACTTGGAGACAAGGT+AGG + chr1_1:56259379-56259398 Msa0030180:CDS 45.0%
ATGAGAGAACTTTGGGCTAC+AGG + chr1_1:56259429-56259448 Msa0030180:CDS 45.0%
!!! GTATTTCTGGGACACGCTTT+TGG + chr1_1:56259533-56259552 Msa0030180:CDS 45.0%
AGCCGAGGATATCACATTCA+AGG - chr1_1:56259566-56259585 None:intergenic 45.0%
TTGAATGTGATATCCTCGGC+TGG + chr1_1:56259565-56259584 Msa0030180:CDS 45.0%
ATCTCAGGATGCTTACCAGA+CGG + chr1_1:56259594-56259613 Msa0030180:CDS 45.0%
!!! GCCAATTTTTGAGATCTGGG+TGG + chr1_1:56259813-56259832 Msa0030180:intron 45.0%
CTCACAAGTGCTTATGTCAG+TGG + chr1_1:56260398-56260417 Msa0030180:intron 45.0%
CACTTAGGGACTGTTTGGAT+TGG - chr1_1:56260439-56260458 None:intergenic 45.0%
GGATCTAGGTTTGATCCAGA+AGG + chr1_1:56260601-56260620 Msa0030180:CDS 45.0%
ACACTAAGTGGTGCATTCCA+AGG - chr1_1:56260688-56260707 None:intergenic 45.0%
! GATGCTCTAAGCACACTAAG+TGG - chr1_1:56260700-56260719 None:intergenic 45.0%
! CTTAGTGTGCTTAGAGCATC+AGG + chr1_1:56260700-56260719 Msa0030180:CDS 45.0%
CAAGCAGCATCAAAAGCTTC+TGG + chr1_1:56260817-56260836 Msa0030180:CDS 45.0%
!! ACGGAGCTTTTTCCTTAAGG+AGG - chr1_1:56260903-56260922 None:intergenic 45.0%
!! CAGACGGAGCTTTTTCCTTA+AGG - chr1_1:56260906-56260925 None:intergenic 45.0%
TTCTTGGGATCCTGAAATGC+CGG - chr1_1:56260958-56260977 None:intergenic 45.0%
CTGTAGAGCAAGTGTCTTCA+TGG - chr1_1:56261083-56261102 None:intergenic 45.0%
ATGTCTGTCTGTTCATGCCA+TGG - chr1_1:56261195-56261214 None:intergenic 45.0%
ATGGCATGAACAGACAGACA+TGG + chr1_1:56261194-56261213 Msa0030180:intron 45.0%
CCAATGATGAGTTCCCATCA+AGG - chr1_1:56262065-56262084 None:intergenic 45.0%
CCTTGATGGGAACTCATCAT+TGG + chr1_1:56262062-56262081 Msa0030180:three_prime_UTR 45.0%
GTAGTGTCCCTATAGATTGG+TGG + chr1_1:56262203-56262222 Msa0030180:three_prime_UTR 45.0%
ATCAGAGGAGGTTACATCCA+AGG - chr1_1:56262267-56262286 None:intergenic 45.0%
GATGTAACCTCCTCTGATGA+TGG + chr1_1:56262269-56262288 Msa0030180:three_prime_UTR 45.0%
TGTAAACCCATCATCAGAGG+AGG - chr1_1:56262279-56262298 None:intergenic 45.0%
ACAACAAGAGATCCATGCAG+TGG + chr1_1:56262518-56262537 Msa0030180:three_prime_UTR 45.0%
!!! CATGTGGGCTGAGTTGGTTT+TGG + chr1_1:56257432-56257451 Msa0030180:five_prime_UTR 50.0%
CACCACCTTGAAACTCTTCC+TGG - chr1_1:56257880-56257899 None:intergenic 50.0%
CAGGAAGAGTTTCAAGGTGG+TGG + chr1_1:56257878-56257897 Msa0030180:CDS 50.0%
CCCCTTTCGCTTAACGTTAC+TGG + chr1_1:56258343-56258362 Msa0030180:intron 50.0%
TGGTCTCGAACCAGTGAAAC+AGG - chr1_1:56258478-56258497 None:intergenic 50.0%
GGGATCTGTTGTATGAGCCT+TGG + chr1_1:56258551-56258570 Msa0030180:CDS 50.0%
TTGTCAGCATTGCTCCAACC+TGG - chr1_1:56259033-56259052 None:intergenic 50.0%
AGGTTGGAGCAATGCTGACA+AGG + chr1_1:56259032-56259051 Msa0030180:CDS 50.0%
CTCTCCGAAATGGAGATACG+GGG - chr1_1:56259142-56259161 None:intergenic 50.0%
GGAAACGAAGGCAACAGTGT+TGG + chr1_1:56259213-56259232 Msa0030180:CDS 50.0%
ACTTGGAGACAAGGTAGGAC+TGG + chr1_1:56259384-56259403 Msa0030180:CDS 50.0%
! GGCTACCCTTTAGTTGATGC+AGG + chr1_1:56259405-56259424 Msa0030180:CDS 50.0%
GAGAACTTTGGGCTACAGGA+TGG + chr1_1:56259433-56259452 Msa0030180:CDS 50.0%
AAGGCAATGGCTACCTGAGT+TGG + chr1_1:56260633-56260652 Msa0030180:CDS 50.0%
!! GGATGATGGATCCACTCAGT+TGG - chr1_1:56260667-56260686 None:intergenic 50.0%
CTGAGTGGATCCATCATCCT+TGG + chr1_1:56260668-56260687 Msa0030180:CDS 50.0%
GTGGTGCATTCCAAGGATGA+TGG - chr1_1:56260681-56260700 None:intergenic 50.0%
! GGCTTGAGTCAGGTTTTCTC+TGG - chr1_1:56260776-56260795 None:intergenic 50.0%
!! AAGCTTCTGGCTCTGAAGCA+AGG + chr1_1:56260830-56260849 Msa0030180:CDS 50.0%
!! AGCTTCTGGCTCTGAAGCAA+GGG + chr1_1:56260831-56260850 Msa0030180:CDS 50.0%
!! TCAGAAAGTGCCGGCATTTC+AGG + chr1_1:56260945-56260964 Msa0030180:CDS 50.0%
ACAGACATGGAGCAAAGCTC+AGG + chr1_1:56261207-56261226 Msa0030180:intron 50.0%
CAGACATGGAGCAAAGCTCA+GGG + chr1_1:56261208-56261227 Msa0030180:intron 50.0%
GAGCAAAGCTCAGGGAAAGA+TGG + chr1_1:56261216-56261235 Msa0030180:intron 50.0%
ACTCTTCCTTGCACCCTTTC+AGG - chr1_1:56262136-56262155 None:intergenic 50.0%
GCAAGGAAGAGTTCCCATCA+AGG + chr1_1:56262144-56262163 Msa0030180:three_prime_UTR 50.0%
ACAAGAGATCCATGCAGTGG+AGG + chr1_1:56262521-56262540 Msa0030180:three_prime_UTR 50.0%
CAAGAGATCCATGCAGTGGA+GGG + chr1_1:56262522-56262541 Msa0030180:three_prime_UTR 50.0%
! AAGGGACATGTGGGCTGAGT+TGG + chr1_1:56257426-56257445 Msa0030180:five_prime_UTR 55.0%
AGCACTAGCTGCTGCTGCTA+GGG + chr1_1:56257798-56257817 Msa0030180:CDS 55.0%
CGTCCTAGTAACGCGTTGCT+TGG - chr1_1:56259000-56259019 None:intergenic 55.0%
ACGCGTTACTAGGACGAGCA+TGG + chr1_1:56259004-56259023 Msa0030180:CDS 55.0%
ATACGGGGATAACAGCGAGG+TGG - chr1_1:56259127-56259146 None:intergenic 55.0%
GAGATACGGGGATAACAGCG+AGG - chr1_1:56259130-56259149 None:intergenic 55.0%
CTGAGATATACTGCCAGCCG+AGG - chr1_1:56259581-56259600 None:intergenic 55.0%
CTCGGCTGGCAGTATATCTC+AGG + chr1_1:56259579-56259598 Msa0030180:CDS 55.0%
TGAGCGCTTGGATGATCCTG+AGG + chr1_1:56259626-56259645 Msa0030180:CDS 55.0%
GTTGGCATTCTCGCCAACTC+AGG - chr1_1:56260649-56260668 None:intergenic 55.0%
TGGCGAGAATGCCAACTGAG+TGG + chr1_1:56260653-56260672 Msa0030180:CDS 55.0%
! AGAGCATCAGGAGTCGAGCT+AGG + chr1_1:56260712-56260731 Msa0030180:CDS 55.0%
! CATTTTCATGCAGGGGCGAC+AGG + chr1_1:56261539-56261558 Msa0030180:intron 55.0%
! ATGAGCACTGCAGCTGCTAC+TGG - chr1_1:56261592-56261611 None:intergenic 55.0%
AGTAGCAGCTGCAGTGCTCA+TGG + chr1_1:56261591-56261610 Msa0030180:CDS 55.0%
! TCACAGCCTGAAAGGGTGCA+AGG + chr1_1:56262127-56262146 Msa0030180:three_prime_UTR 55.0%
CTAGCAGCAGCAGCTAGTGC+TGG - chr1_1:56257799-56257818 None:intergenic 60.0%
CAGCACTAGCTGCTGCTGCT+AGG + chr1_1:56257797-56257816 Msa0030180:CDS 60.0%
CTAGCTGCTGCTGCTAGGGA+TGG + chr1_1:56257802-56257821 Msa0030180:CDS 60.0%
CTAGGACGAGCATGGTCTCC+AGG + chr1_1:56259012-56259031 Msa0030180:CDS 60.0%
GACGAGCATGGTCTCCAGGT+TGG + chr1_1:56259016-56259035 Msa0030180:CDS 60.0%
TTTCATGCAGGGGCGACAGG+AGG + chr1_1:56261542-56261561 Msa0030180:intron 60.0%
GTCGATGTCCCTCCACTGCA+TGG - chr1_1:56262533-56262552 None:intergenic 60.0%
CGCTCAAGCTCGTGACCGTC+TGG - chr1_1:56259612-56259631 None:intergenic 65.0%
CGGTCACGAGCTTGAGCGCT+TGG + chr1_1:56259614-56259633 Msa0030180:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 56257034 56262552 56257034 ID=Msa0030180;Name=Msa0030180
chr1_1 mRNA 56257034 56262552 56257034 ID=Msa0030180-mRNA-1;Parent=Msa0030180;Name=Msa0030180-mRNA-1;_AED=0.09;_eAED=0.09;_QI=705|0.8|0.83|1|0.6|0.5|6|805|617
chr1_1 exon 56257034 56258048 56257034 ID=Msa0030180-mRNA-1:exon:16789;Parent=Msa0030180-mRNA-1
chr1_1 exon 56258473 56258694 56258473 ID=Msa0030180-mRNA-1:exon:16790;Parent=Msa0030180-mRNA-1
chr1_1 exon 56258941 56259647 56258941 ID=Msa0030180-mRNA-1:exon:16791;Parent=Msa0030180-mRNA-1
chr1_1 exon 56260595 56261124 56260595 ID=Msa0030180-mRNA-1:exon:16792;Parent=Msa0030180-mRNA-1
chr1_1 exon 56261552 56262387 56261552 ID=Msa0030180-mRNA-1:exon:16793;Parent=Msa0030180-mRNA-1
chr1_1 exon 56262499 56262552 56262499 ID=Msa0030180-mRNA-1:exon:16794;Parent=Msa0030180-mRNA-1
chr1_1 five_prime_UTR 56257034 56257738 56257034 ID=Msa0030180-mRNA-1:five_prime_utr;Parent=Msa0030180-mRNA-1
chr1_1 CDS 56257739 56258048 56257739 ID=Msa0030180-mRNA-1:cds;Parent=Msa0030180-mRNA-1
chr1_1 CDS 56258473 56258694 56258473 ID=Msa0030180-mRNA-1:cds;Parent=Msa0030180-mRNA-1
chr1_1 CDS 56258941 56259647 56258941 ID=Msa0030180-mRNA-1:cds;Parent=Msa0030180-mRNA-1
chr1_1 CDS 56260595 56261124 56260595 ID=Msa0030180-mRNA-1:cds;Parent=Msa0030180-mRNA-1
chr1_1 CDS 56261552 56261636 56261552 ID=Msa0030180-mRNA-1:cds;Parent=Msa0030180-mRNA-1
chr1_1 three_prime_UTR 56261637 56262387 56261637 ID=Msa0030180-mRNA-1:three_prime_utr;Parent=Msa0030180-mRNA-1
chr1_1 three_prime_UTR 56262499 56262552 56262499 ID=Msa0030180-mRNA-1:three_prime_utr;Parent=Msa0030180-mRNA-1
Gene Sequence

>Msa0030180

ATGGGTAGCAATAGAACCATTGTTTGGTTTAGAAGGGACCTTAGAATTGAGGACAATCCAGCACTAGCTGCTGCTGCTAGGGATGGTTCTGTATTCCCTGTGTTTATATGGTGTCCTAAAGAGGAAGGACAATTTTATCCAGGAAGAGTTTCAAGGTGGTGGCTGAAGCAGTCTTTAGTTCACTTGGATCAGTCCTTGAAATCACTTGGTTCGAGACTCGTGTTGATCAAAACTGAGAGTACTCTCAATGCTCTCTTGGATTGTATAAATGCTATTCAAGCTACAAAAGTTGTGTTTAACCATCTCTATGATCCTGTTTCACTGGTTCGAGACCACAACATCAAAGAAAAGCTAGTGGAACTTGGCTTATCAGTGAAAAGCTATAATGGGGATCTGTTGTATGAGCCTTGGGAAGTATATGATGAGAAGGGACATGCTTTTACAACCTTCGATCCTTTTTGGCAGAGATGCTTGCACAAGCAAATGGAACCTGTTTCGCTTATTCCACCTTGGCAATTAATTCCTGCTGAAGGAAAAGTCAAGAAATGTTCAATAGAGGATTTAGGTCTCGAAAATGAATTAGAAAAACCAAGCAACGCGTTACTAGGACGAGCATGGTCTCCAGGTTGGAGCAATGCTGACAAGGCTTTAACAGAATTTATGGACAAGCAGCTACTTCACTACTCCAAGAATAGGCAAAAGGTTGGTGGAGACTCCACCTCGCTGTTATCCCCGTATCTCCATTTCGGAGAGTTGAGTGTGAGGAAAGTTTTTCAAATGGCTCGCATAAAGCAGATATTGTGGGGAAACGAAGGCAACAGTGTTGGAGAAGAAAGTGTAGCTCTTTTCCTTAGAGCAATTGGACTAAGAGAGTACTCGCGTTATCTTTGTTTCAATTTTCCGTTCACTCATGAGAGAGCACTTCTTGGACACTTGAGTTTTTTCCCTTGGAATGCTGATCCGTCAAACTTCAAGACTTGGAGACAAGGTAGGACTGGCTACCCTTTAGTTGATGCAGGAATGAGAGAACTTTGGGCTACAGGATGGATGCATAACCGAATCAGAGTTATAGTTTCAAGTTTTGCTGTGAAAATGTTGCTTCTACCTTGGAAATGGGGAATGAAGTATTTCTGGGACACGCTTTTGGATGCAGACCTTGAATGTGATATCCTCGGCTGGCAGTATATCTCAGGATGCTTACCAGACGGTCACGAGCTTGAGCGCTTGGATGATCCTGAGATTTTAGGATCTAGGTTTGATCCAGAAGGAGAATATGTAAGGCAATGGCTACCTGAGTTGGCGAGAATGCCAACTGAGTGGATCCATCATCCTTGGAATGCACCACTTAGTGTGCTTAGAGCATCAGGAGTCGAGCTAGGTCAAAACTATCCGAATCCAATAATTGATATAGATATGGCCAGAGAAAACCTGACTCAAGCCATATTCAAGATGTGGGAAATTCAAGCAGCATCAAAAGCTTCTGGCTCTGAAGCAAGGGATGAAGTTGTTGCTGAAAGTGAATATCTAGACATTCCAAAAGTTGTCCTCCTTAAGGAAAAAGCTCCGTCTGCTACTATTTCAGCTAATGATCAGAAAGTGCCGGCATTTCAGGATCCCAAGAATGAACTACCTATTAGGAAGAGAACAAAATGTTTTGAAGAGAAGAGAAAGAACAAGGAAAATTCCGTGAATCATGTGAAAGATAGTAATGTTTCAAGCTCTGACCATGAAGACACTTGCTCTACAGCTGACTCTTCACGTAAGAAGCAGGGCGACAGGAGGTTGATGATGTCCTTATCTATAAATCCAGTAGCAGCTGCAGTGCTCATGGAAAGAAAATGGTGCCATAAATGA
Protein sequence

>Msa0030180

MGSNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLVHLDQSLKSLGSRLVLIKTESTLNALLDCINAIQATKVVFNHLYDPVSLVRDHNIKEKLVELGLSVKSYNGDLLYEPWEVYDEKGHAFTTFDPFWQRCLHKQMEPVSLIPPWQLIPAEGKVKKCSIEDLGLENELEKPSNALLGRAWSPGWSNADKALTEFMDKQLLHYSKNRQKVGGDSTSLLSPYLHFGELSVRKVFQMARIKQILWGNEGNSVGEESVALFLRAIGLREYSRYLCFNFPFTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKMLLLPWKWGMKYFWDTLLDADLECDILGWQYISGCLPDGHELERLDDPEILGSRFDPEGEYVRQWLPELARMPTEWIHHPWNAPLSVLRASGVELGQNYPNPIIDIDMARENLTQAIFKMWEIQAASKASGSEARDEVVAESEYLDIPKVVLLKEKAPSATISANDQKVPAFQDPKNELPIRKRTKCFEEKRKNKENSVNHVKDSNVSSSDHEDTCSTADSSRKKQGDRRLMMSLSINPVAAAVLMERKWCHK*