AlfalfaGEDB | Msa1360410

M. sativa cultivar zhongmu-4 / Msa1360410

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901700
PFAM: PF01657.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1360410	XP_013466037.1	60.687	262	98	5	4	263	8	266	6.41e-89	305
Msa1360410	XP_013466037.1	75.641	624	25	6	298	794	55	678	0.0	848

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1360410	sp\|Q8S9L6\|CRK29_ARATH	37.223	677	257	19	272	794	17	679	1.60e-114	365
Msa1360410	sp\|Q8S9L6\|CRK29_ARATH	36.721	305	179	9	21	319	6	302	1.90e-43	171

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1360410	A0A072VEN8	60.687	262	98	5	4	263	8	266	3.06e-89	305
Msa1360410	A0A072VEN8	75.641	624	25	6	298	794	55	678	0.0	848

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0028320	Msa1360410	0.978325	1.367857e-145	-8.615850e-47
Msa0051060	Msa1360410	0.809600	1.746527e-50	-8.615850e-47
Msa0085290	Msa1360410	0.817414	3.338678e-52	-8.615850e-47
Msa0101620	Msa1360410	0.883535	4.131667e-71	-8.615850e-47
Msa0545150	Msa1360410	0.819665	1.030733e-52	-8.615850e-47
Msa0569370	Msa1360410	0.806772	6.994472e-50	-8.615850e-47
Msa0577060	Msa1360410	0.805390	1.366164e-49	-8.615850e-47
Msa0580920	Msa1360410	0.840475	8.504003e-58	-8.615850e-47
Msa0600780	Msa1360410	0.807893	4.046965e-50	-8.615850e-47
Msa0659510	Msa1360410	0.804376	2.225250e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1360410	MtrunA17_Chr1g0154371	75.641	624	25	6	298	794	55	678	0.0	848
Msa1360410	MtrunA17_Chr1g0154371	60.687	262	98	5	4	263	8	266	5.89e-93	305
Msa1360410	MtrunA17_Chr1g0154311	50.158	634	176	15	297	794	41	670	1.53e-179	530
Msa1360410	MtrunA17_Chr1g0154311	60.569	246	94	3	20	264	10	253	1.02e-88	294
Msa1360410	MtrunA17_Chr1g0154361	91.228	285	25	0	13	297	2	286	2.31e-171	496
Msa1360410	MtrunA17_Chr1g0154361	66.507	209	67	3	298	504	40	247	1.23e-83	269
Msa1360410	MtrunA17_Chr1g0206461	47.106	622	193	11	298	794	41	651	2.96e-165	493
Msa1360410	MtrunA17_Chr1g0206461	52.045	269	115	5	10	275	3	260	1.98e-75	258
Msa1360410	MtrunA17_Chr1g0154321	49.103	613	156	13	298	755	40	651	3.27e-165	497
Msa1360410	MtrunA17_Chr1g0154321	72.297	296	72	3	13	298	2	297	1.32e-133	415

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1360410	AT4G21410.3	37.223	677	257	19	272	794	17	679	1.62e-115	365
Msa1360410	AT4G21410.3	36.721	305	179	9	21	319	6	302	1.93e-44	171
Msa1360410	AT4G23280.3	39.765	596	256	15	292	794	31	616	2.02e-112	355
Msa1360410	AT4G23280.3	37.118	229	130	9	53	277	39	257	1.42e-26	115
Msa1360410	AT4G05200.1	35.814	645	257	15	299	794	39	675	2.53e-108	346
Msa1360410	AT4G05200.1	36.014	286	157	10	11	282	1	274	1.79e-36	147
Msa1360410	AT4G05200.2	35.659	645	258	15	299	794	57	693	2.71e-107	344
Msa1360410	AT4G05200.2	36.014	286	157	10	11	282	19	292	1.86e-36	147
Msa1360410	AT4G23280.2	37.112	644	254	16	292	794	31	664	3.16e-106	340
Msa1360410	AT4G23280.2	37.118	229	130	9	53	277	39	257	1.89e-26	115

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Find 131 sgRNAs with CRISPR-Local

Find 527 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGGACAAGGTGGATT+TGG	0.248913	tig0017060:+45584	Msa1360410:CDS
AAAGTGTCTTAAGGTTTGTT+TGG	0.409201	tig0017060:-43468	None:intergenic
AACAGGCACCGGTGATGGTG+CGG	0.519897	tig0017060:-39510	None:intergenic
AACATTGTGTGATAATTGTT+TGG	0.411916	tig0017060:+39361	Msa1360410:CDS
AACGCAATTGGTCTTTGCAG+AGG	0.600173	tig0017060:+43568	Msa1360410:CDS
AACGCGATTGGACTGTGCAG+AGG	0.639334	tig0017060:+38975	Msa1360410:CDS
AACTTGGACAAGGTGGATTT+GGG	0.379973	tig0017060:+45585	Msa1360410:CDS
AATAATAATCAAACCATATA+TGG	0.327034	tig0017060:+39308	Msa1360410:CDS
AATATTATAAATACCTTGAG+AGG	0.516625	tig0017060:-39582	None:intergenic
AATCCTAAGATAGCAGATTT+TGG	0.247835	tig0017060:+46175	Msa1360410:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCCAACAAAGAAATCAACTA+CGG	+	tig0017060:38912-38931	Msa1360410:CDS	30.0%
TACTCAAACCGTTCAATATT+TGG	+	tig0017060:39119-39138	Msa1360410:CDS	30.0%
ATATTTGGTCTCGATGAAAT+TGG	+	tig0017060:39134-39153	Msa1360410:CDS	30.0%
GTATTCCAAACAAAATAAGC+AGG	-	tig0017060:39161-39180	None:intergenic	30.0%
CAAAGTGGTGAAAAAATTGT+TGG	+	tig0017060:39211-39230	Msa1360410:CDS	30.0%
TGTTTGATAGAAGAGTGAAT+TGG	-	tig0017060:39474-39493	None:intergenic	30.0%
AAACATTCATCCTAACGTAA+AGG	+	tig0017060:39972-39991	Msa1360410:intron	30.0%
CGAAACCAAAAAGTAACTTA+AGG	+	tig0017060:40094-40113	Msa1360410:intron	30.0%
ATTAAGAACAAGGAAATCCA+AGG	+	tig0017060:40330-40349	Msa1360410:intron	30.0%
TGCATATTAAAGGAAACACA+AGG	+	tig0017060:40380-40399	Msa1360410:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0017060	gene	38699	47114	38699	ID=Msa1360410;Name=Msa1360410
tig0017060	mRNA	38699	47114	38699	ID=Msa1360410-mRNA-1;Parent=Msa1360410;Name=Msa1360410-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0.33\|0.57\|1\|0.66\|0.71\|7\|142\|794
tig0017060	exon	38699	39590	38699	ID=Msa1360410-mRNA-1:exon:11879;Parent=Msa1360410-mRNA-1
tig0017060	exon	43443	44063	43443	ID=Msa1360410-mRNA-1:exon:11880;Parent=Msa1360410-mRNA-1
tig0017060	exon	45227	45343	45227	ID=Msa1360410-mRNA-1:exon:11881;Parent=Msa1360410-mRNA-1
tig0017060	exon	45477	45653	45477	ID=Msa1360410-mRNA-1:exon:11882;Parent=Msa1360410-mRNA-1
tig0017060	exon	46023	46260	46023	ID=Msa1360410-mRNA-1:exon:11883;Parent=Msa1360410-mRNA-1
tig0017060	exon	46492	46513	46492	ID=Msa1360410-mRNA-1:exon:11884;Parent=Msa1360410-mRNA-1
tig0017060	exon	46655	47114	46655	ID=Msa1360410-mRNA-1:exon:11885;Parent=Msa1360410-mRNA-1
tig0017060	CDS	38699	39590	38699	ID=Msa1360410-mRNA-1:cds;Parent=Msa1360410-mRNA-1
tig0017060	CDS	43443	44063	43443	ID=Msa1360410-mRNA-1:cds;Parent=Msa1360410-mRNA-1
tig0017060	CDS	45227	45343	45227	ID=Msa1360410-mRNA-1:cds;Parent=Msa1360410-mRNA-1
tig0017060	CDS	45477	45653	45477	ID=Msa1360410-mRNA-1:cds;Parent=Msa1360410-mRNA-1
tig0017060	CDS	46023	46260	46023	ID=Msa1360410-mRNA-1:cds;Parent=Msa1360410-mRNA-1
tig0017060	CDS	46492	46513	46492	ID=Msa1360410-mRNA-1:cds;Parent=Msa1360410-mRNA-1
tig0017060	CDS	46655	46972	46655	ID=Msa1360410-mRNA-1:cds;Parent=Msa1360410-mRNA-1
tig0017060	three_prime_UTR	46973	47114	46973	ID=Msa1360410-mRNA-1:three_prime_utr;Parent=Msa1360410-mRNA-1

Gene Sequence

>Msa1360410

TCACAATTATTGTCTGTTATTTCTTATACAATGTCGTCTTCATTTCTCTATTCTCTCCTTCTCATATTCATTTTCACATCTCAACTCACCACAGCTACCACTGACACTGCAAACAAATTCCAATACTTCTGTGATCAAAATAATAATGGTGGTAACTACACAACCAACAGCACCTACCACAAAAACCTTAACACCCTTCTATCCACTCTCACTTCCAACAAAGAAATCAACTACGGCTTCTATAATTCCTCTTATGGCAACAACAGTGACAAAGTAAACGCGATTGGACTGTGCAGAGGAGATATCAAACCAAATGATTGTCAAAATTGCCTCAAAAATTCAACTGTTCTTCTAACACAACATTGTCAAAACCGAAAAGAAGCAATTGGATGGTACGATGATGAAAAATGCATGTTGCGTTACTCAAACCGTTCAATATTTGGTCTCGATGAAATTGGACCTGCTTATTTTGTTTGGAATACAAACAACGCAACAAATGAGGTTGAGTTTAACAAAGTGGTGAAAAAATTGTTGGATAGTTTAAGAAGCAGAGCTGCATCTGGTGACAGTGACCTTAAATATGCTGTAGGAAGTGACCTGGTTGGTCCAAATAATAATCAAACCATATATGGTCTTGTTCAATGCACACCTGATTTGTCTAAAACATTGTGTGATAATTGTTTGGTTCAATCTATCAAAGAAATTTCAAATTGTTGTAACAATAGGTTAGGTGTTAGAATTGTTAGACCAAGTTGTAATTTGAGATATGAAACCAATTCACTCTTCTATCAAACAACGTCATCAGATTCACCCGCACCATCACCGGTGCCTGTTCCAGTGCCATCATTCTCAACACCTCCTCCGATTGCACAAAACAATACTTCCTCTCAAGGTACCTACACAACCAACAGCATCTACCAAACAAACCTTAAGACACTTTTGTCCACTCTTACTTCCAACACACAAATCAACTACGGTTTCTACAATTTCTCACACGGTGAAAACACAAACAAAGTAAACGCAATTGGTCTTTGCAGAGGCGATGTTAAGACTAACGAGTGTCTTAGTTGCCTCAACGGTTCAAGTAACAATCTCACACAGCTTTGTCCAAACCAAAAAGAAGCAATTGGTTGGTATGAAGATGAAAAATGCATGTTGCGTTATTCAGACCGTTCCATATTCCGGTTAATGGAAATAGGACCTGCATATTATGCAAACAACATGGTAAATGCAACAGATTTGAATGAGTTCAATCAAGTTGTTAGAGACTTGCTTGATAACTTGACTAGTAGAGCTGCATCTGGTGATTCTCGTTTAAAATATGCAGCGTCTAGGGCTCGTGGTCCTAATGATCAAAGCATATATGGACTTGTTCAGTGTACACCTGATTTATCCGAGTCAGATTGTAATTCGTGTTTGGTTCAGTCCATTGACCGTATACCTATTGATTGTTGTAAAGATAAGAAAGGTGGAAGAGTTGTTAGGCCTAGTTGTAACATGAGATTTGAAACCGGAAATAGCAACACTACTACTGTTGTCATTGCCGTAGTAGTACCAGTTGTTGCTGTTGTGGTGCTCATTTTTATCTGCATCTATGTAAGAGTAAGGAAGCCAAGGAAAAAGTTTAAAATTCAAGAAGGAGAAGAAGATGAAGATGTTGAAATTGAAATTTCAGAGTCATTGCAATTCACTTTTGACACAATAAGAGATGCAACAGATGACTTTTCTGCCTCTAATAAACTTGGACAAGGTGGATTTGGGACGGTTTACAAAGTAAGCAACGCTGTTAAATATCACTTACTACTCAATCAAACCAAGAGAACACAATTAAACTGGAACAGAAGGTATAAAATCATTGTAGGTACTGCTCGAGGAATTCTATACCTTCATGAGGATTCTCGGCTGCGTATTATTCATCGTGATCTCAAAGCAAGCAATATTCTCTTAGATGAAGAGATGAATCCTAAGATAGCAGATTTTGGCATGGCTAGACTGTTTGATGTGGACCAAACTCAGGAAAATACAAGCAGAATTGTGGGAACCTATACGGAGTATTTACTCAGCTTTGTATGGAGAAATTGGAGAGATGGGTCACCAACAAATATTATAGATCCCGCATTAAACAATGATTCAGTGAATGAAATAATGAGATGCATCCACATTGGGTTACTTTGTGTTCAAGAAAATGCAGCTAGCAGGCCAACTATGGCTTCTATTGTACTAATGCTTAATAGTCATTCTCTCACTCTCTCGAGACCTTCCGAACCTGCATTTTATGTAGATAGTGGAGCTGGAGACTTTCAAGACATGATGCAATCATGGGAGTCTAGTTCAGTTCAAGAATCAGTAAACGAGGCTTCGATTACAGAGCCATATCCTCGCTAG

Protein sequence

>Msa1360410

SQLLSVISYTMSSSFLYSLLLIFIFTSQLTTATTDTANKFQYFCDQNNNGGNYTTNSTYHKNLNTLLSTLTSNKEINYGFYNSSYGNNSDKVNAIGLCRGDIKPNDCQNCLKNSTVLLTQHCQNRKEAIGWYDDEKCMLRYSNRSIFGLDEIGPAYFVWNTNNATNEVEFNKVVKKLLDSLRSRAASGDSDLKYAVGSDLVGPNNNQTIYGLVQCTPDLSKTLCDNCLVQSIKEISNCCNNRLGVRIVRPSCNLRYETNSLFYQTTSSDSPAPSPVPVPVPSFSTPPPIAQNNTSSQGTYTTNSIYQTNLKTLLSTLTSNTQINYGFYNFSHGENTNKVNAIGLCRGDVKTNECLSCLNGSSNNLTQLCPNQKEAIGWYEDEKCMLRYSDRSIFRLMEIGPAYYANNMVNATDLNEFNQVVRDLLDNLTSRAASGDSRLKYAASRARGPNDQSIYGLVQCTPDLSESDCNSCLVQSIDRIPIDCCKDKKGGRVVRPSCNMRFETGNSNTTTVVIAVVVPVVAVVVLIFICIYVRVRKPRKKFKIQEGEEDEDVEIEISESLQFTFDTIRDATDDFSASNKLGQGGFGTVYKVSNAVKYHLLLNQTKRTQLNWNRRYKIIVGTARGILYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFDVDQTQENTSRIVGTYTEYLLSFVWRNWRDGSPTNIIDPALNNDSVNEIMRCIHIGLLCVQENAASRPTMASIVLMLNSHSLTLSRPSEPAFYVDSGAGDFQDMMQSWESSSVQESVNEASITEPYPR*