Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0774130 | sp|Q850K7|EXLB1_ORYSJ | 67.442 | 172 | 54 | 1 | 2 | 171 | 82 | 253 | 3.71e-83 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0774130 | A0A072UPE6 | 97.674 | 172 | 4 | 0 | 2 | 173 | 83 | 254 | 2.15e-122 | 354 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0774130 | Msa1206080 | 0.820551 | 6.459943e-53 | -8.615850e-47 |
| Msa0774130 | Msa1234730 | 0.803731 | 3.030702e-49 | -8.615850e-47 |
| Msa0774130 | Msa1256960 | 0.818565 | 1.834305e-52 | -8.615850e-47 |
| Msa0774130 | Msa1329500 | 0.803632 | 3.177157e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0774130 | MtrunA17_Chr4g0055061 | 97.674 | 172 | 4 | 0 | 2 | 173 | 83 | 254 | 4.14e-126 | 354 |
| Msa0774130 | MtrunA17_Chr4g0055601 | 40.828 | 169 | 99 | 1 | 2 | 170 | 83 | 250 | 1.10e-42 | 142 |
| Msa0774130 | MtrunA17_Chr4g0055561 | 40.936 | 171 | 100 | 1 | 2 | 172 | 82 | 251 | 2.66e-42 | 141 |
| Msa0774130 | MtrunA17_Chr5g0399811 | 41.520 | 171 | 99 | 1 | 2 | 172 | 83 | 252 | 1.99e-41 | 139 |
| Msa0774130 | MtrunA17_Chr4g0038741 | 39.306 | 173 | 101 | 3 | 2 | 173 | 76 | 245 | 6.89e-41 | 138 |
| Msa0774130 | MtrunA17_Chr7g0231211 | 35.928 | 167 | 99 | 5 | 2 | 165 | 103 | 264 | 2.95e-23 | 92.8 |
| Msa0774130 | MtrunA17_Chr7g0231221 | 36.416 | 173 | 98 | 7 | 2 | 167 | 104 | 271 | 1.39e-21 | 88.6 |
| Msa0774130 | MtrunA17_Chr4g0012801 | 33.918 | 171 | 100 | 8 | 2 | 167 | 98 | 260 | 1.82e-19 | 82.8 |
| Msa0774130 | MtrunA17_Chr2g0324221 | 32.941 | 170 | 104 | 6 | 2 | 167 | 91 | 254 | 7.08e-19 | 80.9 |
| Msa0774130 | MtrunA17_Chr2g0324201 | 32.353 | 170 | 105 | 6 | 2 | 167 | 89 | 252 | 1.04e-18 | 80.5 |
| Msa0774130 | MtrunA17_Chr4g0021641 | 31.176 | 170 | 107 | 6 | 2 | 167 | 97 | 260 | 7.99e-16 | 72.8 |
| Msa0774130 | MtrunA17_Chr4g0055581 | 38.043 | 92 | 56 | 1 | 14 | 104 | 13 | 104 | 1.70e-15 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0774130 | AT4G38400.1 | 40.698 | 172 | 98 | 3 | 2 | 171 | 79 | 248 | 8.40e-42 | 141 |
| Msa0774130 | AT4G17030.1 | 44.048 | 168 | 92 | 2 | 2 | 169 | 82 | 247 | 6.66e-39 | 133 |
| Msa0774130 | AT3G45970.2 | 38.286 | 175 | 99 | 5 | 2 | 171 | 51 | 221 | 1.50e-36 | 127 |
| Msa0774130 | AT3G45970.1 | 38.286 | 175 | 99 | 5 | 2 | 171 | 78 | 248 | 2.53e-36 | 127 |
| Msa0774130 | AT3G45960.1 | 34.884 | 172 | 108 | 3 | 2 | 171 | 30 | 199 | 1.59e-35 | 123 |
| Msa0774130 | AT3G45960.2 | 34.884 | 172 | 108 | 3 | 2 | 171 | 78 | 247 | 6.55e-35 | 123 |
| Msa0774130 | AT1G65680.1 | 36.000 | 175 | 99 | 8 | 2 | 169 | 103 | 271 | 4.69e-19 | 82.0 |
| Msa0774130 | AT1G65681.1 | 29.885 | 174 | 107 | 7 | 2 | 167 | 52 | 218 | 4.42e-18 | 78.6 |
| Msa0774130 | AT2G45110.1 | 30.460 | 174 | 106 | 7 | 2 | 167 | 89 | 255 | 3.97e-17 | 76.6 |
| Msa0774130 | AT3G60570.2 | 27.168 | 173 | 114 | 8 | 2 | 169 | 42 | 207 | 1.15e-14 | 69.3 |
| Msa0774130 | AT3G60570.1 | 27.168 | 173 | 114 | 8 | 2 | 169 | 90 | 255 | 2.82e-14 | 68.9 |
Find 38 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGTGGACCTCTGACTTTA+AGG | 0.275810 | 5_2:-49756851 | Msa0774130:CDS |
| TTAATAACATACCAGAAAAC+TGG | 0.365399 | 5_2:-49756782 | Msa0774130:CDS |
| CAGCAGCAATCCTCATTACT+TGG | 0.386691 | 5_2:-49757349 | Msa0774130:CDS |
| GCCACTTCTCTATTAGCTCT+TGG | 0.398126 | 5_2:-49757701 | Msa0774130:CDS |
| ATCGGGATCATGGCGCAGTC+TGG | 0.433963 | 5_2:-49756890 | Msa0774130:CDS |
| TTGTCTGCAAGTTACTGAAT+CGG | 0.443111 | 5_2:-49756908 | Msa0774130:CDS |
| ACCAACAGTGTTTATTGCTC+AGG | 0.451315 | 5_2:-49757827 | Msa0774130:CDS |
| CAGTGGGATGGCTCAGAGCC+AGG | 0.466299 | 5_2:-49757729 | Msa0774130:CDS |
| TGTCTGCAAGTTACTGAATC+GGG | 0.467993 | 5_2:-49756907 | Msa0774130:CDS |
| ATGTTGTTTAGTACTGAAGA+TGG | 0.475387 | 5_2:-49756828 | Msa0774130:CDS |
| ATACCAGAAAACTGGAAGGC+TGG | 0.508235 | 5_2:-49756774 | Msa0774130:CDS |
| CTGAAGATGGAGAAGATACA+TGG | 0.511542 | 5_2:-49756815 | Msa0774130:CDS |
| GCTCTGAGCCATCCCACTGA+AGG | 0.519839 | 5_2:+49757733 | None:intergenic |
| TCTTATGGTTTCAACAAGGA+AGG | 0.526309 | 5_2:-49757320 | Msa0774130:CDS |
| AAGTTACTGAATCGGGATCA+TGG | 0.530799 | 5_2:-49756900 | Msa0774130:CDS |
| ATAGAGAAGTGGCTGCATCC+TGG | 0.546853 | 5_2:+49757711 | None:intergenic |
| AAGACAAAAGCCAAGTAATG+AGG | 0.564537 | 5_2:+49757339 | None:intergenic |
| AGTGTTTATTGCTCAGGCAA+CGG | 0.564581 | 5_2:-49757821 | Msa0774130:CDS |
| CCATCCCACTGAAGGCTCGT+TGG | 0.571650 | 5_2:+49757741 | None:intergenic |
| CTTAGCCAACGAGCCTTCAG+TGG | 0.574950 | 5_2:-49757746 | Msa0774130:CDS |
| TTGCTCAGGCAACGGTGTCA+CGG | 0.576990 | 5_2:-49757813 | Msa0774130:CDS |
| CAAGTAATGAGGATTGCTGC+TGG | 0.581784 | 5_2:+49757350 | None:intergenic |
| TATGGTTTCAACAAGGAAGG+AGG | 0.586212 | 5_2:-49757317 | Msa0774130:CDS |
| CAGAGGTCCACTCGGTGGAG+AGG | 0.586885 | 5_2:+49756860 | None:intergenic |
| GCTGGAGACACGTATGACTC+AGG | 0.595961 | 5_2:-49756756 | Msa0774130:CDS |
| ACCAAGAGCTAATAGAGAAG+TGG | 0.601542 | 5_2:+49757700 | None:intergenic |
| ATGGTTTCAACAAGGAAGGA+GGG | 0.609790 | 5_2:-49757316 | Msa0774130:CDS |
| CTTAAAGTCAGAGGTCCACT+CGG | 0.610489 | 5_2:+49756852 | None:intergenic |
| GCCTGAGCAATAAACACTGT+TGG | 0.617408 | 5_2:+49757826 | None:intergenic |
| AACAACATCCTTAAAGTCAG+AGG | 0.617433 | 5_2:+49756843 | None:intergenic |
| TTAGCCAACGAGCCTTCAGT+GGG | 0.618388 | 5_2:-49757745 | Msa0774130:CDS |
| CCAACGAGCCTTCAGTGGGA+TGG | 0.622367 | 5_2:-49757741 | Msa0774130:CDS |
| TCGTTAATATTGAATACAGA+CGG | 0.642241 | 5_2:-49757676 | Msa0774130:intron |
| AACTGCTGTGCAGCTCTGCG+AGG | 0.656781 | 5_2:-49757289 | Msa0774130:intron |
| TAACATACCAGAAAACTGGA+AGG | 0.663849 | 5_2:-49756778 | Msa0774130:CDS |
| ACTTCTACCTCTCCACCGAG+TGG | 0.678558 | 5_2:-49756867 | Msa0774130:CDS |
| AAAGTCAGAGGTCCACTCGG+TGG | 0.693232 | 5_2:+49756855 | None:intergenic |
| TTTGTCTTATGGTTTCAACA+AGG | 0.712343 | 5_2:-49757324 | Msa0774130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTCTAAATTTAATTATTT+GGG | + | chr5_2:49757620-49757639 | None:intergenic | 10.0% |
| !! | TCTTCTAAATTTAATTATTT+GGG | + | chr5_2:49757620-49757639 | None:intergenic | 10.0% |
| !!! | TAATTGTAATGTTTTTGTTT+GGG | + | chr5_2:49757346-49757365 | None:intergenic | 15.0% |
| !!! | TTAATTGTAATGTTTTTGTT+TGG | + | chr5_2:49757347-49757366 | None:intergenic | 15.0% |
| !! | CTCTTCTAAATTTAATTATT+TGG | + | chr5_2:49757621-49757640 | None:intergenic | 15.0% |
| !!! | TAATTGTAATGTTTTTGTTT+GGG | + | chr5_2:49757346-49757365 | None:intergenic | 15.0% |
| !!! | TTAATTGTAATGTTTTTGTT+TGG | + | chr5_2:49757347-49757366 | None:intergenic | 15.0% |
| !! | CTCTTCTAAATTTAATTATT+TGG | + | chr5_2:49757621-49757640 | None:intergenic | 15.0% |
| !!! | ATTTTTCATTATTCTTTGAC+AGG | - | chr5_2:49756870-49756889 | Msa0774130:CDS | 20.0% |
| !! | TTATTATGTAAACATAACCA+AGG | - | chr5_2:49757285-49757304 | Msa0774130:intron | 20.0% |
| !!! | TTCGAAAGTTTTAGTTTATT+CGG | + | chr5_2:49757517-49757536 | None:intergenic | 20.0% |
| !! | ATAAACTAAAACTTTCGAAT+AGG | - | chr5_2:49757518-49757537 | Msa0774130:intron | 20.0% |
| !!! | ATTTTTCATTATTCTTTGAC+AGG | - | chr5_2:49756870-49756889 | Msa0774130:CDS | 20.0% |
| !! | TTATTATGTAAACATAACCA+AGG | - | chr5_2:49757285-49757304 | Msa0774130:intron | 20.0% |
| !!! | TTCGAAAGTTTTAGTTTATT+CGG | + | chr5_2:49757517-49757536 | None:intergenic | 20.0% |
| !! | ATAAACTAAAACTTTCGAAT+AGG | - | chr5_2:49757518-49757537 | Msa0774130:intron | 20.0% |
| ! | TCGTTAATATTGAATACAGA+CGG | - | chr5_2:49757052-49757071 | Msa0774130:intron | 25.0% |
| ! | AGTTATTATCGTATGAAAAC+TGG | - | chr5_2:49757134-49757153 | Msa0774130:intron | 25.0% |
| ! | AAAATTGATGCATGGAAAAA+AGG | + | chr5_2:49757257-49757276 | None:intergenic | 25.0% |
| ! | AAACGTAAAAAATTGATGCA+TGG | + | chr5_2:49757265-49757284 | None:intergenic | 25.0% |
| ! | AAACTTTCGAATAGGTTATT+TGG | - | chr5_2:49757526-49757545 | Msa0774130:intron | 25.0% |
| !!! | TTAGTTTCAAGTTTCAACAT+AGG | + | chr5_2:49757587-49757606 | None:intergenic | 25.0% |
| ! | TAGAGAAAACTAAGAAAGAA+AGG | - | chr5_2:49757733-49757752 | Msa0774130:CDS | 25.0% |
| !!! | TTTTCTGGTATGTTATTAAC+AGG | + | chr5_2:49757945-49757964 | None:intergenic | 25.0% |
| ! | TTAATAACATACCAGAAAAC+TGG | - | chr5_2:49757946-49757965 | Msa0774130:intron | 25.0% |
| ! | TCGTTAATATTGAATACAGA+CGG | - | chr5_2:49757052-49757071 | Msa0774130:intron | 25.0% |
| ! | AGTTATTATCGTATGAAAAC+TGG | - | chr5_2:49757134-49757153 | Msa0774130:intron | 25.0% |
| ! | AAAATTGATGCATGGAAAAA+AGG | + | chr5_2:49757257-49757276 | None:intergenic | 25.0% |
| ! | AAACGTAAAAAATTGATGCA+TGG | + | chr5_2:49757265-49757284 | None:intergenic | 25.0% |
| ! | AAACTTTCGAATAGGTTATT+TGG | - | chr5_2:49757526-49757545 | Msa0774130:intron | 25.0% |
| !!! | TTAGTTTCAAGTTTCAACAT+AGG | + | chr5_2:49757587-49757606 | None:intergenic | 25.0% |
| ! | TAGAGAAAACTAAGAAAGAA+AGG | - | chr5_2:49757733-49757752 | Msa0774130:CDS | 25.0% |
| !!! | TTTTCTGGTATGTTATTAAC+AGG | + | chr5_2:49757945-49757964 | None:intergenic | 25.0% |
| ! | TTAATAACATACCAGAAAAC+TGG | - | chr5_2:49757946-49757965 | Msa0774130:intron | 25.0% |
| ! | GAATAGATAATCTTGTTTGC+TGG | + | chr5_2:49756834-49756853 | None:intergenic | 30.0% |
| !! | ATTACTTGGCTTTTGTCTTA+TGG | - | chr5_2:49757393-49757412 | Msa0774130:CDS | 30.0% |
| TTTGTCTTATGGTTTCAACA+AGG | - | chr5_2:49757404-49757423 | Msa0774130:intron | 30.0% | |
| ! | AAGACATTTTTCACATGTAG+TGG | + | chr5_2:49757650-49757669 | None:intergenic | 30.0% |
| ! | ATGTTGTTTAGTACTGAAGA+TGG | - | chr5_2:49757900-49757919 | Msa0774130:intron | 30.0% |
| ! | GAATAGATAATCTTGTTTGC+TGG | + | chr5_2:49756834-49756853 | None:intergenic | 30.0% |
| !! | ATTACTTGGCTTTTGTCTTA+TGG | - | chr5_2:49757393-49757412 | Msa0774130:CDS | 30.0% |
| TTTGTCTTATGGTTTCAACA+AGG | - | chr5_2:49757404-49757423 | Msa0774130:intron | 30.0% | |
| ! | AAGACATTTTTCACATGTAG+TGG | + | chr5_2:49757650-49757669 | None:intergenic | 30.0% |
| ! | ATGTTGTTTAGTACTGAAGA+TGG | - | chr5_2:49757900-49757919 | Msa0774130:intron | 30.0% |
| GAGTTCGATATGAAAGACTT+GGG | - | chr5_2:49756807-49756826 | Msa0774130:CDS | 35.0% | |
| TCATTATTCTTTGACAGGTG+AGG | - | chr5_2:49756875-49756894 | Msa0774130:CDS | 35.0% | |
| !!! | ACGGTAGTTTTAACTGATCA+AGG | - | chr5_2:49756934-49756953 | Msa0774130:intron | 35.0% |
| AAGACAAAAGCCAAGTAATG+AGG | + | chr5_2:49757392-49757411 | None:intergenic | 35.0% | |
| TCTTATGGTTTCAACAAGGA+AGG | - | chr5_2:49757408-49757427 | Msa0774130:intron | 35.0% | |
| TTGTCTGCAAGTTACTGAAT+CGG | - | chr5_2:49757820-49757839 | Msa0774130:CDS | 35.0% | |
| AACAACATCCTTAAAGTCAG+AGG | + | chr5_2:49757888-49757907 | None:intergenic | 35.0% | |
| TAACATACCAGAAAACTGGA+AGG | - | chr5_2:49757950-49757969 | Msa0774130:intron | 35.0% | |
| GAGTTCGATATGAAAGACTT+GGG | - | chr5_2:49756807-49756826 | Msa0774130:CDS | 35.0% | |
| TCATTATTCTTTGACAGGTG+AGG | - | chr5_2:49756875-49756894 | Msa0774130:CDS | 35.0% | |
| !!! | ACGGTAGTTTTAACTGATCA+AGG | - | chr5_2:49756934-49756953 | Msa0774130:intron | 35.0% |
| AAGACAAAAGCCAAGTAATG+AGG | + | chr5_2:49757392-49757411 | None:intergenic | 35.0% | |
| TCTTATGGTTTCAACAAGGA+AGG | - | chr5_2:49757408-49757427 | Msa0774130:intron | 35.0% | |
| TTGTCTGCAAGTTACTGAAT+CGG | - | chr5_2:49757820-49757839 | Msa0774130:CDS | 35.0% | |
| AACAACATCCTTAAAGTCAG+AGG | + | chr5_2:49757888-49757907 | None:intergenic | 35.0% | |
| TAACATACCAGAAAACTGGA+AGG | - | chr5_2:49757950-49757969 | Msa0774130:intron | 35.0% | |
| GGAGTTCGATATGAAAGACT+TGG | - | chr5_2:49756806-49756825 | Msa0774130:CDS | 40.0% | |
| ACCAACAGTGTTTATTGCTC+AGG | - | chr5_2:49756901-49756920 | Msa0774130:CDS | 40.0% | |
| AGTGTTTATTGCTCAGGCAA+CGG | - | chr5_2:49756907-49756926 | Msa0774130:CDS | 40.0% | |
| !!! | GTTTTAACTGATCAAGGCTC+AGG | - | chr5_2:49756940-49756959 | Msa0774130:intron | 40.0% |
| ACCAAGAGCTAATAGAGAAG+TGG | + | chr5_2:49757031-49757050 | None:intergenic | 40.0% | |
| ACTCATCGCAGATGTATCAT+CGG | + | chr5_2:49757186-49757205 | None:intergenic | 40.0% | |
| GATGCATGGAAAAAAGGACA+TGG | + | chr5_2:49757251-49757270 | None:intergenic | 40.0% | |
| TATGGTTTCAACAAGGAAGG+AGG | - | chr5_2:49757411-49757430 | Msa0774130:intron | 40.0% | |
| ATGGTTTCAACAAGGAAGGA+GGG | - | chr5_2:49757412-49757431 | Msa0774130:intron | 40.0% | |
| CACAAACTACAACTTATCGC+AGG | + | chr5_2:49757483-49757502 | None:intergenic | 40.0% | |
| TGTCTGCAAGTTACTGAATC+GGG | - | chr5_2:49757821-49757840 | Msa0774130:CDS | 40.0% | |
| AAGTTACTGAATCGGGATCA+TGG | - | chr5_2:49757828-49757847 | Msa0774130:CDS | 40.0% | |
| CTGAAGATGGAGAAGATACA+TGG | - | chr5_2:49757913-49757932 | Msa0774130:intron | 40.0% | |
| GGAGTTCGATATGAAAGACT+TGG | - | chr5_2:49756806-49756825 | Msa0774130:CDS | 40.0% | |
| ACCAACAGTGTTTATTGCTC+AGG | - | chr5_2:49756901-49756920 | Msa0774130:CDS | 40.0% | |
| AGTGTTTATTGCTCAGGCAA+CGG | - | chr5_2:49756907-49756926 | Msa0774130:CDS | 40.0% | |
| !!! | GTTTTAACTGATCAAGGCTC+AGG | - | chr5_2:49756940-49756959 | Msa0774130:intron | 40.0% |
| ACCAAGAGCTAATAGAGAAG+TGG | + | chr5_2:49757031-49757050 | None:intergenic | 40.0% | |
| ACTCATCGCAGATGTATCAT+CGG | + | chr5_2:49757186-49757205 | None:intergenic | 40.0% | |
| GATGCATGGAAAAAAGGACA+TGG | + | chr5_2:49757251-49757270 | None:intergenic | 40.0% | |
| TATGGTTTCAACAAGGAAGG+AGG | - | chr5_2:49757411-49757430 | Msa0774130:intron | 40.0% | |
| ATGGTTTCAACAAGGAAGGA+GGG | - | chr5_2:49757412-49757431 | Msa0774130:intron | 40.0% | |
| CACAAACTACAACTTATCGC+AGG | + | chr5_2:49757483-49757502 | None:intergenic | 40.0% | |
| TGTCTGCAAGTTACTGAATC+GGG | - | chr5_2:49757821-49757840 | Msa0774130:CDS | 40.0% | |
| AAGTTACTGAATCGGGATCA+TGG | - | chr5_2:49757828-49757847 | Msa0774130:CDS | 40.0% | |
| CTGAAGATGGAGAAGATACA+TGG | - | chr5_2:49757913-49757932 | Msa0774130:intron | 40.0% | |
| !! | TGGTATGACATGTTGGTGGT+AGG | - | chr5_2:49756738-49756757 | Msa0774130:CDS | 45.0% |
| TCCTGGACTCGATCTTTGTT+GGG | + | chr5_2:49756765-49756784 | None:intergenic | 45.0% | |
| TTCCTGGACTCGATCTTTGT+TGG | + | chr5_2:49756766-49756785 | None:intergenic | 45.0% | |
| AGATCGAGTCCAGGAATTGA+AGG | - | chr5_2:49756770-49756789 | Msa0774130:CDS | 45.0% | |
| ! | AATTGAAGGCACAGTTGGCT+AGG | - | chr5_2:49756784-49756803 | Msa0774130:CDS | 45.0% |
| ! | ATTGAAGGCACAGTTGGCTA+GGG | - | chr5_2:49756785-49756804 | Msa0774130:CDS | 45.0% |
| GCCTGAGCAATAAACACTGT+TGG | + | chr5_2:49756905-49756924 | None:intergenic | 45.0% | |
| ! | GCCACTTCTCTATTAGCTCT+TGG | - | chr5_2:49757027-49757046 | Msa0774130:intron | 45.0% |
| ! | CTTTTCCCTAGATCTTACCG+TGG | - | chr5_2:49757210-49757229 | Msa0774130:intron | 45.0% |
| CTTCACCACGGTAAGATCTA+GGG | + | chr5_2:49757218-49757237 | None:intergenic | 45.0% | |
| ! | GGTGCTATAATGCTTCACCA+CGG | + | chr5_2:49757230-49757249 | None:intergenic | 45.0% |
| ATGAAACCCTGGAGATAACG+AGG | + | chr5_2:49757316-49757335 | None:intergenic | 45.0% | |
| CAAGTAATGAGGATTGCTGC+TGG | + | chr5_2:49757381-49757400 | None:intergenic | 45.0% | |
| CAGCAGCAATCCTCATTACT+TGG | - | chr5_2:49757379-49757398 | Msa0774130:CDS | 45.0% | |
| CTACAACTTATCGCAGGACA+AGG | + | chr5_2:49757477-49757496 | None:intergenic | 45.0% | |
| CTTAAAGTCAGAGGTCCACT+CGG | + | chr5_2:49757879-49757898 | None:intergenic | 45.0% | |
| ATACCAGAAAACTGGAAGGC+TGG | - | chr5_2:49757954-49757973 | Msa0774130:intron | 45.0% | |
| !! | TGGTATGACATGTTGGTGGT+AGG | - | chr5_2:49756738-49756757 | Msa0774130:CDS | 45.0% |
| TCCTGGACTCGATCTTTGTT+GGG | + | chr5_2:49756765-49756784 | None:intergenic | 45.0% | |
| TTCCTGGACTCGATCTTTGT+TGG | + | chr5_2:49756766-49756785 | None:intergenic | 45.0% | |
| AGATCGAGTCCAGGAATTGA+AGG | - | chr5_2:49756770-49756789 | Msa0774130:CDS | 45.0% | |
| ! | AATTGAAGGCACAGTTGGCT+AGG | - | chr5_2:49756784-49756803 | Msa0774130:CDS | 45.0% |
| ! | ATTGAAGGCACAGTTGGCTA+GGG | - | chr5_2:49756785-49756804 | Msa0774130:CDS | 45.0% |
| GCCTGAGCAATAAACACTGT+TGG | + | chr5_2:49756905-49756924 | None:intergenic | 45.0% | |
| ! | GCCACTTCTCTATTAGCTCT+TGG | - | chr5_2:49757027-49757046 | Msa0774130:intron | 45.0% |
| ! | CTTTTCCCTAGATCTTACCG+TGG | - | chr5_2:49757210-49757229 | Msa0774130:intron | 45.0% |
| CTTCACCACGGTAAGATCTA+GGG | + | chr5_2:49757218-49757237 | None:intergenic | 45.0% | |
| ! | GGTGCTATAATGCTTCACCA+CGG | + | chr5_2:49757230-49757249 | None:intergenic | 45.0% |
| ATGAAACCCTGGAGATAACG+AGG | + | chr5_2:49757316-49757335 | None:intergenic | 45.0% | |
| CAAGTAATGAGGATTGCTGC+TGG | + | chr5_2:49757381-49757400 | None:intergenic | 45.0% | |
| CAGCAGCAATCCTCATTACT+TGG | - | chr5_2:49757379-49757398 | Msa0774130:CDS | 45.0% | |
| CTACAACTTATCGCAGGACA+AGG | + | chr5_2:49757477-49757496 | None:intergenic | 45.0% | |
| CTTAAAGTCAGAGGTCCACT+CGG | + | chr5_2:49757879-49757898 | None:intergenic | 45.0% | |
| ATACCAGAAAACTGGAAGGC+TGG | - | chr5_2:49757954-49757973 | Msa0774130:intron | 45.0% | |
| CCTGGACTCGATCTTTGTTG+GGG | + | chr5_2:49756764-49756783 | None:intergenic | 50.0% | |
| CCAACTGTGCCTTCAATTCC+TGG | + | chr5_2:49756782-49756801 | None:intergenic | 50.0% | |
| ! | CCAGGAATTGAAGGCACAGT+TGG | - | chr5_2:49756779-49756798 | Msa0774130:CDS | 50.0% |
| TTAGCCAACGAGCCTTCAGT+GGG | - | chr5_2:49756983-49757002 | Msa0774130:intron | 50.0% | |
| ATAGAGAAGTGGCTGCATCC+TGG | + | chr5_2:49757020-49757039 | None:intergenic | 50.0% | |
| GCTTCACCACGGTAAGATCT+AGG | + | chr5_2:49757219-49757238 | None:intergenic | 50.0% | |
| GAGATAACGAGGAGAGACCT+TGG | + | chr5_2:49757305-49757324 | None:intergenic | 50.0% | |
| GTCTCTCCTCGTTATCTCCA+GGG | - | chr5_2:49757307-49757326 | Msa0774130:CDS | 50.0% | |
| TGGGTAGCTACATGAAACCC+TGG | + | chr5_2:49757327-49757346 | None:intergenic | 50.0% | |
| CGAGTGGACCTCTGACTTTA+AGG | - | chr5_2:49757877-49757896 | Msa0774130:intron | 50.0% | |
| ! | TCTCCAGCCTTCCAGTTTTC+TGG | + | chr5_2:49757960-49757979 | None:intergenic | 50.0% |
| CCTGGACTCGATCTTTGTTG+GGG | + | chr5_2:49756764-49756783 | None:intergenic | 50.0% | |
| CCAACTGTGCCTTCAATTCC+TGG | + | chr5_2:49756782-49756801 | None:intergenic | 50.0% | |
| ! | CCAGGAATTGAAGGCACAGT+TGG | - | chr5_2:49756779-49756798 | Msa0774130:CDS | 50.0% |
| TTAGCCAACGAGCCTTCAGT+GGG | - | chr5_2:49756983-49757002 | Msa0774130:intron | 50.0% | |
| ATAGAGAAGTGGCTGCATCC+TGG | + | chr5_2:49757020-49757039 | None:intergenic | 50.0% | |
| GCTTCACCACGGTAAGATCT+AGG | + | chr5_2:49757219-49757238 | None:intergenic | 50.0% | |
| GAGATAACGAGGAGAGACCT+TGG | + | chr5_2:49757305-49757324 | None:intergenic | 50.0% | |
| GTCTCTCCTCGTTATCTCCA+GGG | - | chr5_2:49757307-49757326 | Msa0774130:CDS | 50.0% | |
| TGGGTAGCTACATGAAACCC+TGG | + | chr5_2:49757327-49757346 | None:intergenic | 50.0% | |
| CGAGTGGACCTCTGACTTTA+AGG | - | chr5_2:49757877-49757896 | Msa0774130:intron | 50.0% | |
| ! | TCTCCAGCCTTCCAGTTTTC+TGG | + | chr5_2:49757960-49757979 | None:intergenic | 50.0% |
| CCCCAACAAAGATCGAGTCC+AGG | - | chr5_2:49756761-49756780 | Msa0774130:CDS | 55.0% | |
| ! | TTGCTCAGGCAACGGTGTCA+CGG | - | chr5_2:49756915-49756934 | Msa0774130:CDS | 55.0% |
| CTTAGCCAACGAGCCTTCAG+TGG | - | chr5_2:49756982-49757001 | Msa0774130:intron | 55.0% | |
| GGTCTCTCCTCGTTATCTCC+AGG | - | chr5_2:49757306-49757325 | Msa0774130:CDS | 55.0% | |
| ACTTCTACCTCTCCACCGAG+TGG | - | chr5_2:49757861-49757880 | Msa0774130:intron | 55.0% | |
| AAAGTCAGAGGTCCACTCGG+TGG | + | chr5_2:49757876-49757895 | None:intergenic | 55.0% | |
| GCTGGAGACACGTATGACTC+AGG | - | chr5_2:49757972-49757991 | Msa0774130:intron | 55.0% | |
| CCCCAACAAAGATCGAGTCC+AGG | - | chr5_2:49756761-49756780 | Msa0774130:CDS | 55.0% | |
| ! | TTGCTCAGGCAACGGTGTCA+CGG | - | chr5_2:49756915-49756934 | Msa0774130:CDS | 55.0% |
| CTTAGCCAACGAGCCTTCAG+TGG | - | chr5_2:49756982-49757001 | Msa0774130:intron | 55.0% | |
| GGTCTCTCCTCGTTATCTCC+AGG | - | chr5_2:49757306-49757325 | Msa0774130:CDS | 55.0% | |
| ACTTCTACCTCTCCACCGAG+TGG | - | chr5_2:49757861-49757880 | Msa0774130:intron | 55.0% | |
| AAAGTCAGAGGTCCACTCGG+TGG | + | chr5_2:49757876-49757895 | None:intergenic | 55.0% | |
| GCTGGAGACACGTATGACTC+AGG | - | chr5_2:49757972-49757991 | Msa0774130:intron | 55.0% | |
| CCATCCCACTGAAGGCTCGT+TGG | + | chr5_2:49756990-49757009 | None:intergenic | 60.0% | |
| CCAACGAGCCTTCAGTGGGA+TGG | - | chr5_2:49756987-49757006 | Msa0774130:intron | 60.0% | |
| ! | GCTCTGAGCCATCCCACTGA+AGG | + | chr5_2:49756998-49757017 | None:intergenic | 60.0% |
| AACTGCTGTGCAGCTCTGCG+AGG | - | chr5_2:49757439-49757458 | Msa0774130:intron | 60.0% | |
| ATCGGGATCATGGCGCAGTC+TGG | - | chr5_2:49757838-49757857 | Msa0774130:CDS | 60.0% | |
| CCATCCCACTGAAGGCTCGT+TGG | + | chr5_2:49756990-49757009 | None:intergenic | 60.0% | |
| CCAACGAGCCTTCAGTGGGA+TGG | - | chr5_2:49756987-49757006 | Msa0774130:intron | 60.0% | |
| ! | GCTCTGAGCCATCCCACTGA+AGG | + | chr5_2:49756998-49757017 | None:intergenic | 60.0% |
| AACTGCTGTGCAGCTCTGCG+AGG | - | chr5_2:49757439-49757458 | Msa0774130:intron | 60.0% | |
| ATCGGGATCATGGCGCAGTC+TGG | - | chr5_2:49757838-49757857 | Msa0774130:CDS | 60.0% | |
| CAGTGGGATGGCTCAGAGCC+AGG | - | chr5_2:49756999-49757018 | Msa0774130:intron | 65.0% | |
| ! | CAGAGGTCCACTCGGTGGAG+AGG | + | chr5_2:49757871-49757890 | None:intergenic | 65.0% |
| CAGTGGGATGGCTCAGAGCC+AGG | - | chr5_2:49756999-49757018 | Msa0774130:intron | 65.0% | |
| ! | CAGAGGTCCACTCGGTGGAG+AGG | + | chr5_2:49757871-49757890 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 49756737 | 49758013 | 49756737 | ID=Msa0774130;Name=Msa0774130 |
| chr5_2 | mRNA | 49756737 | 49758013 | 49756737 | ID=Msa0774130-mRNA-1;Parent=Msa0774130;Name=Msa0774130-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|0.75|1|1|4|0|173 |
| chr5_2 | exon | 49758011 | 49758013 | 49758011 | ID=Msa0774130-mRNA-1:exon:14903;Parent=Msa0774130-mRNA-1 |
| chr5_2 | exon | 49757677 | 49757858 | 49757677 | ID=Msa0774130-mRNA-1:exon:14902;Parent=Msa0774130-mRNA-1 |
| chr5_2 | exon | 49757290 | 49757422 | 49757290 | ID=Msa0774130-mRNA-1:exon:14901;Parent=Msa0774130-mRNA-1 |
| chr5_2 | exon | 49756737 | 49756940 | 49756737 | ID=Msa0774130-mRNA-1:exon:14900;Parent=Msa0774130-mRNA-1 |
| chr5_2 | CDS | 49758011 | 49758013 | 49758011 | ID=Msa0774130-mRNA-1:cds;Parent=Msa0774130-mRNA-1 |
| chr5_2 | CDS | 49757677 | 49757858 | 49757677 | ID=Msa0774130-mRNA-1:cds;Parent=Msa0774130-mRNA-1 |
| chr5_2 | CDS | 49757290 | 49757422 | 49757290 | ID=Msa0774130-mRNA-1:cds;Parent=Msa0774130-mRNA-1 |
| chr5_2 | CDS | 49756737 | 49756940 | 49756737 | ID=Msa0774130-mRNA-1:cds;Parent=Msa0774130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
