Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341300 | XP_003609619.1 | 99.579 | 475 | 2 | 0 | 1 | 475 | 1 | 475 | 0.0 | 985 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341300 | sp|Q9FEE2|TON2_ARATH | 89.462 | 465 | 48 | 1 | 3 | 467 | 6 | 469 | 0.0 | 867 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341300 | G7JK96 | 99.579 | 475 | 2 | 0 | 1 | 475 | 1 | 475 | 0.0 | 985 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000880 | Msa1341300 | 0.809772 | 1.604298e-50 | -8.615850e-47 |
| Msa0024400 | Msa1341300 | 0.825298 | 5.058518e-54 | -8.615850e-47 |
| Msa0047640 | Msa1341300 | 0.815463 | 9.126390e-52 | -8.615850e-47 |
| Msa0077340 | Msa1341300 | 0.815471 | 9.089558e-52 | -8.615850e-47 |
| Msa0089980 | Msa1341300 | 0.855686 | 5.339502e-62 | -8.615850e-47 |
| Msa0090010 | Msa1341300 | 0.854612 | 1.096081e-61 | -8.615850e-47 |
| Msa0104670 | Msa1341300 | 0.803885 | 2.815262e-49 | -8.615850e-47 |
| Msa0106620 | Msa1341300 | 0.800959 | 1.128219e-48 | -8.615850e-47 |
| Msa0607320 | Msa1341300 | 0.821097 | 4.839903e-53 | -8.615850e-47 |
| Msa0608270 | Msa1341300 | 0.821544 | 3.816730e-53 | -8.615850e-47 |
| Msa0618950 | Msa1341300 | 0.824705 | 6.983703e-54 | -8.615850e-47 |
| Msa0618970 | Msa1341300 | 0.820333 | 7.248474e-53 | -8.615850e-47 |
| Msa0620230 | Msa1341300 | 0.805629 | 1.217083e-49 | -8.615850e-47 |
| Msa0623990 | Msa1341300 | 0.817872 | 2.631603e-52 | -8.615850e-47 |
| Msa0624060 | Msa1341300 | 0.819278 | 1.263116e-52 | -8.615850e-47 |
| Msa0626460 | Msa1341300 | 0.810158 | 1.324465e-50 | -8.615850e-47 |
| Msa0628420 | Msa1341300 | 0.825133 | 5.533911e-54 | -8.615850e-47 |
| Msa0648830 | Msa1341300 | 0.826211 | 3.071782e-54 | -8.615850e-47 |
| Msa0651560 | Msa1341300 | 0.821765 | 3.391936e-53 | -8.615850e-47 |
| Msa0652690 | Msa1341300 | 0.825046 | 5.801795e-54 | -8.615850e-47 |
| Msa0674480 | Msa1341300 | 0.819539 | 1.101565e-52 | -8.615850e-47 |
| Msa0676130 | Msa1341300 | 0.813859 | 2.068271e-51 | -8.615850e-47 |
| Msa0676180 | Msa1341300 | 0.816537 | 5.253658e-52 | -8.615850e-47 |
| Msa0690310 | Msa1341300 | 0.826835 | 2.181493e-54 | -8.615850e-47 |
| Msa0698100 | Msa1341300 | 0.809092 | 2.245158e-50 | -8.615850e-47 |
| Msa0702720 | Msa1341300 | 0.815332 | 9.759633e-52 | -8.615850e-47 |
| Msa0705390 | Msa1341300 | 0.812605 | 3.896923e-51 | -8.615850e-47 |
| Msa0741440 | Msa1341300 | 0.802508 | 5.425932e-49 | -8.615850e-47 |
| Msa0752700 | Msa1341300 | 0.800357 | 1.496877e-48 | -8.615850e-47 |
| Msa0774580 | Msa1341300 | 0.800182 | 1.624664e-48 | -8.615850e-47 |
| Msa0786750 | Msa1341300 | 0.827258 | 1.727912e-54 | -8.615850e-47 |
| Msa0794970 | Msa1341300 | 0.815866 | 7.421792e-52 | -8.615850e-47 |
| Msa0795750 | Msa1341300 | 0.811642 | 6.321784e-51 | -8.615850e-47 |
| Msa0822500 | Msa1341300 | 0.812155 | 4.888801e-51 | -8.615850e-47 |
| Msa0830660 | Msa1341300 | 0.800335 | 1.512871e-48 | -8.615850e-47 |
| Msa0831100 | Msa1341300 | 0.812450 | 4.212960e-51 | -8.615850e-47 |
| Msa0833530 | Msa1341300 | 0.828114 | 1.075973e-54 | -8.615850e-47 |
| Msa0138360 | Msa1341300 | 0.830221 | 3.317304e-55 | -8.615850e-47 |
| Msa0141400 | Msa1341300 | 0.820155 | 7.965790e-53 | -8.615850e-47 |
| Msa0147980 | Msa1341300 | 0.832972 | 6.966277e-56 | -8.615850e-47 |
| Msa0163510 | Msa1341300 | 0.819986 | 8.706839e-53 | -8.615850e-47 |
| Msa0173800 | Msa1341300 | 0.821691 | 3.528856e-53 | -8.615850e-47 |
| Msa0202490 | Msa1341300 | 0.805187 | 1.506553e-49 | -8.615850e-47 |
| Msa0206630 | Msa1341300 | -0.803939 | 2.743669e-49 | -8.615850e-47 |
| Msa0217670 | Msa1341300 | 0.804006 | 2.657391e-49 | -8.615850e-47 |
| Msa0219850 | Msa1341300 | 0.802764 | 4.805440e-49 | -8.615850e-47 |
| Msa0225480 | Msa1341300 | 0.838302 | 3.117331e-57 | -8.615850e-47 |
| Msa0237200 | Msa1341300 | 0.809967 | 1.456397e-50 | -8.615850e-47 |
| Msa0237210 | Msa1341300 | 0.834068 | 3.711545e-56 | -8.615850e-47 |
| Msa0237300 | Msa1341300 | 0.817463 | 3.254893e-52 | -8.615850e-47 |
| Msa1225860 | Msa1341300 | -0.806016 | 1.009430e-49 | -8.615850e-47 |
| Msa1228040 | Msa1341300 | 0.811061 | 8.450390e-51 | -8.615850e-47 |
| Msa1252970 | Msa1341300 | 0.812106 | 5.008660e-51 | -8.615850e-47 |
| Msa1258030 | Msa1341300 | -0.828355 | 9.414844e-55 | -8.615850e-47 |
| Msa1260220 | Msa1341300 | 0.821502 | 3.902040e-53 | -8.615850e-47 |
| Msa1276150 | Msa1341300 | 0.802765 | 4.802564e-49 | -8.615850e-47 |
| Msa1292020 | Msa1341300 | 0.813731 | 2.206116e-51 | -8.615850e-47 |
| Msa1302200 | Msa1341300 | 0.872630 | 2.744094e-67 | -8.615850e-47 |
| Msa1325410 | Msa1341300 | -0.816047 | 6.761317e-52 | -8.615850e-47 |
| Msa1340200 | Msa1341300 | 0.860844 | 1.555556e-63 | -8.615850e-47 |
| Msa1341300 | Msa1341840 | 0.800390 | 1.474069e-48 | -8.615850e-47 |
| Msa1341300 | Msa1346840 | 0.803891 | 2.807226e-49 | -8.615850e-47 |
| Msa1341300 | Msa1356610 | 0.811588 | 6.495525e-51 | -8.615850e-47 |
| Msa1341300 | Msa1359560 | 0.801332 | 9.465488e-49 | -8.615850e-47 |
| Msa1341300 | Msa1363820 | -0.824379 | 8.334519e-54 | -8.615850e-47 |
| Msa1341300 | Msa1364350 | -0.807544 | 4.800338e-50 | -8.615850e-47 |
| Msa1341300 | Msa1371520 | 0.827020 | 1.970147e-54 | -8.615850e-47 |
| Msa1341300 | Msa1378410 | 0.823321 | 1.475216e-53 | -8.615850e-47 |
| Msa1341300 | Msa1393820 | 0.844491 | 7.315535e-59 | -8.615850e-47 |
| Msa1341300 | Msa1407190 | 0.802445 | 5.591530e-49 | -8.615850e-47 |
| Msa1341300 | Msa1411950 | 0.813711 | 2.228771e-51 | -8.615850e-47 |
| Msa1341300 | Msa1414820 | 0.808103 | 3.650820e-50 | -8.615850e-47 |
| Msa1341300 | Msa1432130 | 0.805681 | 1.187081e-49 | -8.615850e-47 |
| Msa1341300 | Msa1433700 | 0.801294 | 9.635594e-49 | -8.615850e-47 |
| Msa1341300 | Msa1438520 | 0.812564 | 3.979338e-51 | -8.615850e-47 |
| Msa1341300 | Msa1452710 | 0.825190 | 5.365828e-54 | -8.615850e-47 |
| Msa1341300 | Msa1464090 | 0.859090 | 5.261046e-63 | -8.615850e-47 |
| Msa0369420 | Msa1341300 | 0.822933 | 1.817044e-53 | -8.615850e-47 |
| Msa0378970 | Msa1341300 | 0.837025 | 6.629593e-57 | -8.615850e-47 |
| Msa0379650 | Msa1341300 | 0.819658 | 1.034432e-52 | -8.615850e-47 |
| Msa0395980 | Msa1341300 | 0.823386 | 1.424140e-53 | -8.615850e-47 |
| Msa0428580 | Msa1341300 | 0.844601 | 6.835295e-59 | -8.615850e-47 |
| Msa0437270 | Msa1341300 | 0.804289 | 2.319997e-49 | -8.615850e-47 |
| Msa0439960 | Msa1341300 | 0.806381 | 8.455961e-50 | -8.615850e-47 |
| Msa0440510 | Msa1341300 | 0.828171 | 1.042671e-54 | -8.615850e-47 |
| Msa0468250 | Msa1341300 | 0.810782 | 9.714402e-51 | -8.615850e-47 |
| Msa0472930 | Msa1341300 | 0.804974 | 1.669229e-49 | -8.615850e-47 |
| Msa0474940 | Msa1341300 | 0.840015 | 1.121377e-57 | -8.615850e-47 |
| Msa0480780 | Msa1341300 | 0.821405 | 4.108495e-53 | -8.615850e-47 |
| Msa0980540 | Msa1341300 | 0.803086 | 4.122034e-49 | -8.615850e-47 |
| Msa0992510 | Msa1341300 | 0.813940 | 1.984097e-51 | -8.615850e-47 |
| Msa0995370 | Msa1341300 | 0.828603 | 8.201792e-55 | -8.615850e-47 |
| Msa1002960 | Msa1341300 | 0.813215 | 2.865210e-51 | -8.615850e-47 |
| Msa1034500 | Msa1341300 | 0.809452 | 1.879379e-50 | -8.615850e-47 |
| Msa1070460 | Msa1341300 | 0.810170 | 1.317035e-50 | -8.615850e-47 |
| Msa1089450 | Msa1341300 | 0.811161 | 8.040984e-51 | -8.615850e-47 |
| Msa0240900 | Msa1341300 | 0.821749 | 3.421646e-53 | -8.615850e-47 |
| Msa0274720 | Msa1341300 | 0.811342 | 7.344516e-51 | -8.615850e-47 |
| Msa0274970 | Msa1341300 | 0.810908 | 9.123439e-51 | -8.615850e-47 |
| Msa0274980 | Msa1341300 | 0.843661 | 1.221455e-58 | -8.615850e-47 |
| Msa0284180 | Msa1341300 | 0.806091 | 9.731427e-50 | -8.615850e-47 |
| Msa0288010 | Msa1341300 | -0.840686 | 7.486878e-58 | -8.615850e-47 |
| Msa0302570 | Msa1341300 | 0.801074 | 1.068978e-48 | -8.615850e-47 |
| Msa0315520 | Msa1341300 | 0.819574 | 1.081343e-52 | -8.615850e-47 |
| Msa0315680 | Msa1341300 | 0.809581 | 1.762623e-50 | -8.615850e-47 |
| Msa0315690 | Msa1341300 | 0.843980 | 1.003598e-58 | -8.615850e-47 |
| Msa0317970 | Msa1341300 | 0.806585 | 7.658192e-50 | -8.615850e-47 |
| Msa0321620 | Msa1341300 | 0.807744 | 4.351764e-50 | -8.615850e-47 |
| Msa0349470 | Msa1341300 | 0.824124 | 9.564545e-54 | -8.615850e-47 |
| Msa0358400 | Msa1341300 | 0.815053 | 1.126022e-51 | -8.615850e-47 |
| Msa0362890 | Msa1341300 | 0.816429 | 5.555378e-52 | -8.615850e-47 |
| Msa1128270 | Msa1341300 | 0.803352 | 3.631682e-49 | -8.615850e-47 |
| Msa1161810 | Msa1341300 | 0.820209 | 7.741471e-53 | -8.615850e-47 |
| Msa1190100 | Msa1341300 | -0.827769 | 1.302660e-54 | -8.615850e-47 |
| Msa1213040 | Msa1341300 | 0.817786 | 2.753209e-52 | -8.615850e-47 |
| Msa1217420 | Msa1341300 | 0.980380 | 4.369319e-150 | -8.615850e-47 |
| Msa0491000 | Msa1341300 | 0.824616 | 7.330835e-54 | -8.615850e-47 |
| Msa0527190 | Msa1341300 | 0.833051 | 6.656811e-56 | -8.615850e-47 |
| Msa0527540 | Msa1341300 | 0.801795 | 7.605341e-49 | -8.615850e-47 |
| Msa0531250 | Msa1341300 | 0.823026 | 1.728382e-53 | -8.615850e-47 |
| Msa0534980 | Msa1341300 | 0.823618 | 1.257054e-53 | -8.615850e-47 |
| Msa0544730 | Msa1341300 | 0.830700 | 2.533576e-55 | -8.615850e-47 |
| Msa0549450 | Msa1341300 | 0.813065 | 3.090589e-51 | -8.615850e-47 |
| Msa0560500 | Msa1341300 | 0.802141 | 6.459562e-49 | -8.615850e-47 |
| Msa0572550 | Msa1341300 | -0.815506 | 8.928310e-52 | -8.615850e-47 |
| Msa0572750 | Msa1341300 | 0.820653 | 6.121057e-53 | -8.615850e-47 |
| Msa0583360 | Msa1341300 | -0.807542 | 4.803293e-50 | -8.615850e-47 |
| Msa0588090 | Msa1341300 | 0.830349 | 3.088232e-55 | -8.615850e-47 |
| Msa0880450 | Msa1341300 | 0.829061 | 6.352853e-55 | -8.615850e-47 |
| Msa0894400 | Msa1341300 | 0.809797 | 1.584410e-50 | -8.615850e-47 |
| Msa0910960 | Msa1341300 | 0.827817 | 1.268607e-54 | -8.615850e-47 |
| Msa0921000 | Msa1341300 | 0.816206 | 6.231273e-52 | -8.615850e-47 |
| Msa0945240 | Msa1341300 | 0.827581 | 1.445922e-54 | -8.615850e-47 |
| Msa0959520 | Msa1341300 | 0.825376 | 4.847823e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341300 | MtrunA17_Chr4g0066911 | 99.579 | 475 | 2 | 0 | 1 | 475 | 1 | 475 | 0.0 | 985 |
| Msa1341300 | MtrunA17_Chr1g0187531 | 25.982 | 331 | 228 | 8 | 150 | 472 | 177 | 498 | 1.67e-22 | 100 |
| Msa1341300 | MtrunA17_Chr1g0190151 | 25.982 | 331 | 227 | 9 | 150 | 472 | 176 | 496 | 1.45e-20 | 94.7 |
| Msa1341300 | MtrunA17_Chr7g0274671 | 26.446 | 242 | 167 | 5 | 234 | 472 | 265 | 498 | 4.99e-19 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341300 | AT5G18580.1 | 89.462 | 465 | 48 | 1 | 3 | 467 | 6 | 469 | 0.0 | 867 |
| Msa1341300 | AT5G28850.2 | 25.602 | 332 | 228 | 9 | 150 | 472 | 173 | 494 | 1.38e-21 | 98.2 |
| Msa1341300 | AT5G28900.1 | 25.301 | 332 | 229 | 9 | 150 | 472 | 173 | 494 | 2.66e-21 | 97.4 |
| Msa1341300 | AT1G03960.7 | 27.132 | 258 | 176 | 5 | 218 | 472 | 39 | 287 | 1.01e-20 | 93.6 |
| Msa1341300 | AT5G44090.1 | 28.077 | 260 | 171 | 7 | 218 | 472 | 249 | 497 | 1.45e-20 | 95.1 |
| Msa1341300 | AT5G28850.1 | 26.829 | 246 | 169 | 5 | 230 | 472 | 45 | 282 | 1.70e-20 | 92.8 |
| Msa1341300 | AT1G03960.4 | 25.071 | 351 | 243 | 9 | 132 | 472 | 8 | 348 | 1.71e-20 | 93.6 |
| Msa1341300 | AT1G03960.2 | 25.071 | 351 | 243 | 9 | 132 | 472 | 8 | 348 | 1.71e-20 | 93.6 |
| Msa1341300 | AT1G03960.3 | 25.071 | 351 | 243 | 9 | 132 | 472 | 8 | 348 | 1.71e-20 | 93.6 |
| Msa1341300 | AT5G44090.2 | 29.457 | 258 | 170 | 7 | 218 | 472 | 284 | 532 | 2.26e-20 | 94.7 |
| Msa1341300 | AT1G03960.6 | 25.071 | 351 | 243 | 9 | 132 | 472 | 86 | 426 | 2.45e-20 | 94.0 |
| Msa1341300 | AT1G54450.1 | 24.847 | 326 | 232 | 6 | 150 | 470 | 173 | 490 | 2.58e-20 | 94.4 |
| Msa1341300 | AT1G03960.1 | 25.071 | 351 | 243 | 9 | 132 | 472 | 148 | 488 | 2.92e-20 | 94.0 |
| Msa1341300 | AT1G03960.5 | 24.490 | 343 | 241 | 8 | 132 | 466 | 148 | 480 | 5.43e-19 | 90.1 |
Find 143 sgRNAs with CRISPR-Local
Find 502 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATAGATGTGCGGGGTTTC+TGG | 0.015632 | tig0004809:-46561 | Msa1341300:CDS |
| GTTGAAATGTATTAAATTTA+AGG | 0.146417 | tig0004809:+46447 | None:intergenic |
| TGCCACCATCAATCCATTTA+TGG | 0.164869 | tig0004809:+46710 | None:intergenic |
| AACAAATATGTCAAGCCTTC+TGG | 0.172392 | tig0004809:+47173 | None:intergenic |
| ACAGAGACGTACACCATAAA+TGG | 0.257192 | tig0004809:-46723 | Msa1341300:intron |
| AGAATATAAGCTAATAATAT+TGG | 0.268539 | tig0004809:-46262 | Msa1341300:three_prime_UTR |
| ACATGCCTTCTTGTAGAAAC+TGG | 0.282567 | tig0004809:+52934 | None:intergenic |
| CGCGGGTTTCGATTAGAGTT+AGG | 0.286178 | tig0004809:-53292 | Msa1341300:five_prime_UTR |
| TGACTGATTGATCCCTCTTC+AGG | 0.291840 | tig0004809:+52403 | None:intergenic |
| TACAGTACCACCTTGTTTGC+AGG | 0.300753 | tig0004809:+46594 | None:intergenic |
| CATAGATGTGCGGGGTTTCT+GGG | 0.302117 | tig0004809:-46560 | Msa1341300:CDS |
| TTACAACATTTGAGAATTCT+AGG | 0.308577 | tig0004809:+46425 | None:intergenic |
| AAGATGTACGGGATGAAATC+TGG | 0.319681 | tig0004809:-46669 | Msa1341300:CDS |
| CTAAAGAATCGTCGGCATTT+AGG | 0.331185 | tig0004809:+50330 | None:intergenic |
| TCTCGGATCCGAAGCTTTGA+TGG | 0.336437 | tig0004809:-53127 | Msa1341300:CDS |
| GAGTTTCTTGGACTTTAATC+TGG | 0.338671 | tig0004809:-47216 | Msa1341300:CDS |
| CGCATCACGTAAAGGTAAAA+TGG | 0.341167 | tig0004809:+50252 | None:intergenic |
| TCAAACTTCATAAAGTTAGA+AGG | 0.342405 | tig0004809:+50306 | None:intergenic |
| CTTGGCACAATTACGTACTA+TGG | 0.343771 | tig0004809:-49248 | Msa1341300:CDS |
| ACAAATATGTCAAGCCTTCT+GGG | 0.348319 | tig0004809:+47174 | None:intergenic |
| TTTGTTGAATGCCGATGATT+TGG | 0.354002 | tig0004809:-52243 | Msa1341300:CDS |
| ATCGGATCCGGTGCCGGTCT+CGG | 0.355652 | tig0004809:-53144 | Msa1341300:CDS |
| ATAATCTGATTAGGACAAAT+AGG | 0.356488 | tig0004809:-53448 | None:intergenic |
| TCAATCACATTACAAACATT+TGG | 0.360452 | tig0004809:+46284 | None:intergenic |
| ACGGGATGAAATCTGGGATA+TGG | 0.389280 | tig0004809:-46662 | Msa1341300:CDS |
| GCTGCTGAGTAATTGTCTTC+AGG | 0.399176 | tig0004809:-48255 | Msa1341300:CDS |
| TTTCGTTGCCTTGATCTTCA+AGG | 0.399828 | tig0004809:-47152 | Msa1341300:CDS |
| AACGATACTTGGCCAATCTC+TGG | 0.409291 | tig0004809:+52374 | None:intergenic |
| GAAGTTTGAGAAGGATGAGC+AGG | 0.413563 | tig0004809:-50292 | Msa1341300:CDS |
| CCCTGCATCCTCCATGCTGT+GGG | 0.419674 | tig0004809:-53187 | Msa1341300:CDS |
| AACTTTGTATTGAAGATGTA+CGG | 0.423478 | tig0004809:-46681 | Msa1341300:CDS |
| GATCACATTGGCTGATCTAC+TGG | 0.423557 | tig0004809:-46617 | Msa1341300:CDS |
| TAATTGTCTTCAGGAACTAA+TGG | 0.427270 | tig0004809:-48246 | Msa1341300:CDS |
| ACCCACAGCATGGAGGATGC+AGG | 0.431811 | tig0004809:+53186 | None:intergenic |
| CTGGGTTTGAGGAGCGTCAT+GGG | 0.441576 | tig0004809:+53221 | None:intergenic |
| TGCCTTGATCTTCAAGGGAG+GGG | 0.443199 | tig0004809:-47146 | Msa1341300:CDS |
| TAATATTGGTTTGTTGTCGA+TGG | 0.445687 | tig0004809:-46248 | Msa1341300:three_prime_UTR |
| CGCAATCTCCGTCGTTTCAT+CGG | 0.447105 | tig0004809:-53162 | Msa1341300:CDS |
| GCGGGTTTCGATTAGAGTTA+GGG | 0.450924 | tig0004809:-53291 | Msa1341300:five_prime_UTR |
| CAGTCAGAGAGTCCAGAGAT+TGG | 0.451193 | tig0004809:-52386 | Msa1341300:CDS |
| ACACAGAACAGGCTGAAAAC+TGG | 0.454575 | tig0004809:-47924 | Msa1341300:CDS |
| CCCCTGCATCCTCCATGCTG+TGG | 0.459542 | tig0004809:-53188 | Msa1341300:CDS |
| GAGCAGATCTATTCTTCCTC+TGG | 0.459652 | tig0004809:+46496 | None:intergenic |
| GAGGAAGAATAGATCTGCTC+CGG | 0.459739 | tig0004809:-46493 | Msa1341300:exon |
| AAGTTTGAGAAGGATGAGCA+GGG | 0.462952 | tig0004809:-50291 | Msa1341300:CDS |
| AGAAGTCACAGACACAGAAC+AGG | 0.463244 | tig0004809:-47935 | Msa1341300:CDS |
| GGAACTAATGGAGCTTCATC+AGG | 0.467348 | tig0004809:-48234 | Msa1341300:intron |
| CGTTTCATCGGATCCGGTGC+CGG | 0.473905 | tig0004809:-53150 | Msa1341300:CDS |
| TCTGTATGTACAGAACAAAT+AGG | 0.473976 | tig0004809:-50354 | Msa1341300:CDS |
| CTCCGTCGTTTCATCGGATC+CGG | 0.475832 | tig0004809:-53156 | Msa1341300:CDS |
| TCTGGGTTTGAGGAGCGTCA+TGG | 0.475855 | tig0004809:+53220 | None:intergenic |
| TTCGGATCCGAGACCGGCAC+CGG | 0.480160 | tig0004809:+53137 | None:intergenic |
| TAGCATGCTCATAGATGTGC+GGG | 0.483960 | tig0004809:-46569 | Msa1341300:CDS |
| TTGCCTTGATCTTCAAGGGA+GGG | 0.497256 | tig0004809:-47147 | Msa1341300:CDS |
| AGTACGTAATTGTGCCAAGT+TGG | 0.498410 | tig0004809:+49252 | None:intergenic |
| GTACACCATAAATGGATTGA+TGG | 0.499781 | tig0004809:-46715 | Msa1341300:CDS |
| TGATGCTACTGGTGCAGAAA+AGG | 0.502959 | tig0004809:-52180 | Msa1341300:intron |
| GACAAATAGGTGTAGGAGGT+TGG | 0.504888 | tig0004809:-53435 | Msa1341300:five_prime_UTR |
| TTCGTTGCCTTGATCTTCAA+GGG | 0.506827 | tig0004809:-47151 | Msa1341300:CDS |
| AGTGAATATCTGCTGTAGTA+AGG | 0.507664 | tig0004809:+47120 | None:intergenic |
| CCCACAGCATGGAGGATGCA+GGG | 0.507937 | tig0004809:+53187 | None:intergenic |
| GTTATTGTATATCTAGCCAT+TGG | 0.508151 | tig0004809:-46339 | Msa1341300:three_prime_UTR |
| CAGAAGAAAAGCGCTGAAGC+TGG | 0.509459 | tig0004809:-52965 | Msa1341300:CDS |
| GATCTACTGGCCTGCAAACA+AGG | 0.510356 | tig0004809:-46604 | Msa1341300:CDS |
| CTCGGATCCGAAGCTTTGAT+GGG | 0.511430 | tig0004809:-53126 | Msa1341300:intron |
| GTACGTAATTGTGCCAAGTT+GGG | 0.518298 | tig0004809:+49253 | None:intergenic |
| CAAAGCTTCGGATCCGAGAC+CGG | 0.518896 | tig0004809:+53131 | None:intergenic |
| TAACTTTATGAAGTTTGAGA+AGG | 0.521882 | tig0004809:-50301 | Msa1341300:CDS |
| AATTCCCAGTTTCTACAAGA+AGG | 0.521965 | tig0004809:-52939 | Msa1341300:intron |
| TCATCCAAACCTCGTCTATG+AGG | 0.526337 | tig0004809:+49163 | None:intergenic |
| TGGTGGAAAGACAAGGGAGA+TGG | 0.526463 | tig0004809:-47246 | Msa1341300:CDS |
| ACCCGCGAGAGATATATGAT+TGG | 0.528013 | tig0004809:+53308 | None:intergenic |
| AAGAAAGAAAGAAAGAACAG+TGG | 0.528863 | tig0004809:-53390 | Msa1341300:five_prime_UTR |
| AGAGTTGTGGTGGAAAGACA+AGG | 0.529670 | tig0004809:-47253 | Msa1341300:CDS |
| CGTTGGCTCCGATAAGCAAC+CGG | 0.536263 | tig0004809:+53342 | None:intergenic |
| CATGCCTTCTTGTAGAAACT+GGG | 0.536301 | tig0004809:+52935 | None:intergenic |
| GTAAAGGTAAAATGGTAGAA+TGG | 0.536646 | tig0004809:+50260 | None:intergenic |
| CAACAGAGAAAATCTTCTAC+AGG | 0.537600 | tig0004809:-46530 | Msa1341300:CDS |
| ATACGAACCCATCAAAGCTT+CGG | 0.541549 | tig0004809:+53119 | None:intergenic |
| CTACCGTGCGCATCACGTAA+AGG | 0.541937 | tig0004809:+50244 | None:intergenic |
| AACCCCTCCCTTGAAGATCA+AGG | 0.541976 | tig0004809:+47144 | None:intergenic |
| GTGATCTTGAGGTCATCTGC+TGG | 0.549058 | tig0004809:+46634 | None:intergenic |
| TGATTAGGACAAATAGGTGT+AGG | 0.549565 | tig0004809:-53442 | Msa1341300:five_prime_UTR |
| AGCTTTCTGTTAGCATGACC+CGG | 0.552985 | tig0004809:+46474 | None:intergenic |
| AGATGTACGGGATGAAATCT+GGG | 0.554056 | tig0004809:-46668 | Msa1341300:CDS |
| ACTTCTGCCCGACGTGTATG+TGG | 0.559250 | tig0004809:-47892 | Msa1341300:intron |
| CAATTACGTACTATGGATGC+AGG | 0.560142 | tig0004809:-49241 | Msa1341300:CDS |
| CCACAGCATGGAGGATGCAG+GGG | 0.560303 | tig0004809:+53188 | None:intergenic |
| ATACCCACCACATACACGTC+GGG | 0.570402 | tig0004809:+47885 | None:intergenic |
| TTGTATATCTAGCCATTGGT+TGG | 0.574289 | tig0004809:-46335 | Msa1341300:three_prime_UTR |
| CACAGCATGGAGGATGCAGG+GGG | 0.579017 | tig0004809:+53189 | None:intergenic |
| GAGCTGCGAGAATATGCAGA+TGG | 0.579437 | tig0004809:-47573 | Msa1341300:CDS |
| CGATGATTTGGATGCAATGT+GGG | 0.583046 | tig0004809:-52231 | Msa1341300:CDS |
| ACGAGGTCTTATACCCAACT+TGG | 0.584602 | tig0004809:-49266 | Msa1341300:CDS |
| ATCCAATCATATATCTCTCG+CGG | 0.585624 | tig0004809:-53310 | Msa1341300:five_prime_UTR |
| TAGAAGGACTAAAGAATCGT+CGG | 0.586744 | tig0004809:+50322 | None:intergenic |
| CGCCGCGGAAAGAGTTGTGG+TGG | 0.589233 | tig0004809:-47263 | Msa1341300:CDS |
| CCACATTGCATCCAAATCAT+CGG | 0.595437 | tig0004809:+52232 | None:intergenic |
| TCCAATCATATATCTCTCGC+GGG | 0.596990 | tig0004809:-53309 | Msa1341300:five_prime_UTR |
| CGATGAAACGACGGAGATTG+CGG | 0.597769 | tig0004809:+53163 | None:intergenic |
| CTTCTTCTAGAAACCTGAAG+AGG | 0.597788 | tig0004809:-52416 | Msa1341300:intron |
| GAGCTTGATGAGGATTCTGA+TGG | 0.600586 | tig0004809:-49998 | Msa1341300:CDS |
| GAGATTGCGGACCCACAGCA+TGG | 0.604791 | tig0004809:+53176 | None:intergenic |
| ACTTTGTATTGAAGATGTAC+GGG | 0.606242 | tig0004809:-46680 | Msa1341300:CDS |
| GCTCTTGATAAAGATTCAAG+CGG | 0.606728 | tig0004809:-47612 | Msa1341300:CDS |
| GTTGCCTTGATCTTCAAGGG+AGG | 0.607519 | tig0004809:-47148 | Msa1341300:CDS |
| AGGAAGAATAGATCTGCTCC+GGG | 0.608456 | tig0004809:-46492 | Msa1341300:exon |
| AGCTGCGAGAATATGCAGAT+GGG | 0.609717 | tig0004809:-47572 | Msa1341300:CDS |
| TTCTTCTAGAAACCTGAAGA+GGG | 0.610376 | tig0004809:-52415 | Msa1341300:intron |
| GTAACCCGTGTCATTGTATG+TGG | 0.611821 | tig0004809:-46406 | Msa1341300:three_prime_UTR |
| GATTGGATCTGAGATACCGT+TGG | 0.612954 | tig0004809:+53325 | None:intergenic |
| GAGTTGTGGTGGAAAGACAA+GGG | 0.614206 | tig0004809:-47252 | Msa1341300:CDS |
| GTTCGCCGCGGAAAGAGTTG+TGG | 0.614666 | tig0004809:-47266 | Msa1341300:CDS |
| ACAGGAAGAAGAAGAACCAG+AGG | 0.614776 | tig0004809:-46512 | Msa1341300:CDS |
| GATCAGCCAATGTGATCTTG+AGG | 0.615588 | tig0004809:+46623 | None:intergenic |
| TTAGGACAAATAGGTGTAGG+AGG | 0.617452 | tig0004809:-53439 | Msa1341300:five_prime_UTR |
| GCTAGATATACAATAACCTA+CGG | 0.621194 | tig0004809:+46345 | None:intergenic |
| TTCCACCACAACTCTTTCCG+CGG | 0.622417 | tig0004809:+47261 | None:intergenic |
| CACCATAAATGGATTGATGG+TGG | 0.628066 | tig0004809:-46712 | Msa1341300:CDS |
| CACCGGATCCGATGAAACGA+CGG | 0.631083 | tig0004809:+53154 | None:intergenic |
| TAATTCCACATACAATGACA+CGG | 0.637601 | tig0004809:+46401 | None:intergenic |
| CGGTTGCTTATCGGAGCCAA+CGG | 0.638617 | tig0004809:-53341 | Msa1341300:five_prime_UTR |
| CAAATATGTCAAGCCTTCTG+GGG | 0.638698 | tig0004809:+47175 | None:intergenic |
| GAAAACAAAGACACCCCAGA+AGG | 0.642493 | tig0004809:-47188 | Msa1341300:CDS |
| TGATATGAGTGAGCTTGATG+AGG | 0.644452 | tig0004809:-50008 | Msa1341300:CDS |
| TGTGTGATTGATGATGCTAC+TGG | 0.649443 | tig0004809:-52191 | Msa1341300:CDS |
| TTACCTTTACGTGATGCGCA+CGG | 0.650553 | tig0004809:-50247 | Msa1341300:intron |
| CTAGCATGCTCATAGATGTG+CGG | 0.651577 | tig0004809:-46570 | Msa1341300:CDS |
| GCAGCAATACGACAATACAT+TGG | 0.652854 | tig0004809:+49211 | None:intergenic |
| AATTCCACATACAATGACAC+GGG | 0.655214 | tig0004809:+46402 | None:intergenic |
| AGATGACCTCAAGATCACAT+TGG | 0.674350 | tig0004809:-46629 | Msa1341300:CDS |
| CCGATGATTTGGATGCAATG+TGG | 0.676057 | tig0004809:-52232 | Msa1341300:CDS |
| CAACCGGCGATGTACAGCGA+CGG | 0.677187 | tig0004809:-53249 | Msa1341300:exon |
| TATTTGTTCTGTACATACAG+AGG | 0.679593 | tig0004809:+50356 | None:intergenic |
| CTGTACATACAGAGGCAATG+TGG | 0.681429 | tig0004809:+50364 | None:intergenic |
| ACAGCATGGAGGATGCAGGG+GGG | 0.693428 | tig0004809:+53190 | None:intergenic |
| GATACCCACCACATACACGT+CGG | 0.704023 | tig0004809:+47884 | None:intergenic |
| ATTGCGGACCCACAGCATGG+AGG | 0.723040 | tig0004809:+53179 | None:intergenic |
| CTACTGGCCTGCAAACAAGG+TGG | 0.734069 | tig0004809:-46601 | Msa1341300:CDS |
| TTCGACGAACATGTTCGCCG+CGG | 0.749858 | tig0004809:-47278 | Msa1341300:CDS |
| GAAATGGAAGCGTATATACG+AGG | 0.750462 | tig0004809:-49283 | Msa1341300:CDS |
| ATGACGCTCCTCAAACCCAG+AGG | 0.752891 | tig0004809:-53218 | Msa1341300:CDS |
| AGCATGCTCATAGATGTGCG+GGG | 0.760397 | tig0004809:-46568 | Msa1341300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTATTTATTTAATTT+TGG | + | tig0004809:52366-52385 | None:intergenic | 0.0% |
| !! | ATGCATAATAATAAAATTAA+TGG | + | tig0004809:46776-46795 | None:intergenic | 10.0% |
| !!! | TATATATATATTACAACTTT+TGG | + | tig0004809:47599-47618 | None:intergenic | 10.0% |
| !! | TTTAGTATGAAATATATATT+AGG | + | tig0004809:48577-48596 | None:intergenic | 10.0% |
| !! | CAAATTAGTATATTAAATTA+TGG | - | tig0004809:52821-52840 | Msa1341300:intron | 10.0% |
| !!! | GCCTATATTTTAATTTATAT+AGG | - | tig0004809:47778-47797 | Msa1341300:intron | 15.0% |
| !! | GCCTATATAAATTAAAATAT+AGG | + | tig0004809:47782-47801 | None:intergenic | 15.0% |
| !! | TTAATTGTAATAATAAGTGT+TGG | + | tig0004809:48003-48022 | None:intergenic | 15.0% |
| !! | ATAAAATATTTCCTGTTAAA+TGG | - | tig0004809:49082-49101 | Msa1341300:intron | 15.0% |
| !! | TAAAATATTTCCTGTTAAAT+GGG | - | tig0004809:49083-49102 | Msa1341300:intron | 15.0% |
| !!! | TCTTTTATTGAATTGTTAAT+TGG | - | tig0004809:49204-49223 | Msa1341300:CDS | 15.0% |
| !! | TGCAAAATATTCAAAATAAA+TGG | + | tig0004809:50734-50753 | None:intergenic | 15.0% |
| !! | GAAAAAATAAATAAATAGCA+TGG | + | tig0004809:51843-51862 | None:intergenic | 15.0% |
| !! | GTTGAAATGTATTAAATTTA+AGG | + | tig0004809:53236-53255 | None:intergenic | 15.0% |
| !! | AGAATATAAGCTAATAATAT+TGG | - | tig0004809:53418-53437 | Msa1341300:five_prime_UTR | 15.0% |
| !! | ATAAAAGGCTAAAACAATAT+TGG | + | tig0004809:46834-46853 | None:intergenic | 20.0% |
| !!! | GTTTGTTTTTTCATTTGTTA+CGG | - | tig0004809:46986-47005 | Msa1341300:intron | 20.0% |
| !! | CTAATATATGTTTGAAGATT+AGG | - | tig0004809:47176-47195 | Msa1341300:CDS | 20.0% |
| !! | TATTTGAATTGCATATAGAT+AGG | + | tig0004809:47230-47249 | None:intergenic | 20.0% |
| !!! | TTTTTGAAGGTATTATTTCT+TGG | - | tig0004809:47328-47347 | Msa1341300:intron | 20.0% |
| !!! | AAAGTGCTATTTTCAAAATA+GGG | + | tig0004809:48500-48519 | None:intergenic | 20.0% |
| !!! | TAAAGTGCTATTTTCAAAAT+AGG | + | tig0004809:48499-48518 | None:intergenic | 20.0% |
| !!! | AATTTTAATAATATCCAGCA+TGG | + | tig0004809:47971-47990 | None:intergenic | 20.0% |
| !!! | TCTTTTATTTTGTCTTAATC+TGG | - | tig0004809:48223-48242 | Msa1341300:intron | 20.0% |
| !!! | TTTTTTTCAAAAATCCACAT+AGG | - | tig0004809:48377-48396 | Msa1341300:intron | 20.0% |
| !!! | TAAAGTGCTATTTTCAAAAT+AGG | - | tig0004809:48499-48518 | Msa1341300:intron | 20.0% |
| !!! | AAAGTGCTATTTTCAAAATA+GGG | - | tig0004809:48500-48519 | Msa1341300:intron | 20.0% |
| !!! | AGGAAATATTTTATCTTGAT+AGG | + | tig0004809:49076-49095 | None:intergenic | 20.0% |
| !! | AAAAATAAAAAACATACGTG+TGG | + | tig0004809:49718-49737 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTTATCTCTGCT+TGG | - | tig0004809:49737-49756 | Msa1341300:intron | 20.0% |
| !! | ATTGAATTGAACTATTTGTT+AGG | - | tig0004809:49776-49795 | Msa1341300:intron | 20.0% |
| !! | TAAACAGAGATTAGATAATA+AGG | + | tig0004809:49979-49998 | None:intergenic | 20.0% |
| !! | AATAAGATAGTTGAGAATAA+AGG | + | tig0004809:50003-50022 | None:intergenic | 20.0% |
| !! | GAAAAAAAGATTAGATGATA+AGG | + | tig0004809:50127-50146 | None:intergenic | 20.0% |
| !! | ATAGTCAGAAATTTATAACA+AGG | + | tig0004809:50164-50183 | None:intergenic | 20.0% |
| !! | TATGCATGTCAATAAAATAA+AGG | + | tig0004809:50191-50210 | None:intergenic | 20.0% |
| !!! | TATTTACGAATTTGTTTTTC+AGG | - | tig0004809:50375-50394 | Msa1341300:CDS | 20.0% |
| !!! | AAACATATGTTATTTTCAAC+AGG | + | tig0004809:50765-50784 | None:intergenic | 20.0% |
| !! | TATTACAACTTAATCATGAA+GGG | - | tig0004809:50937-50956 | Msa1341300:intron | 20.0% |
| !!! | TTTTTGTTAACTATGTTAAG+AGG | - | tig0004809:51125-51144 | Msa1341300:intron | 20.0% |
| !!! | AATTATTCTTTTTACGTTAC+AGG | - | tig0004809:51381-51400 | Msa1341300:intron | 20.0% |
| !!! | TTAGAACAAAATTTTGTTCA+TGG | + | tig0004809:51657-51676 | None:intergenic | 20.0% |
| !!! | AAACAACAGTTTTTTTCTTT+AGG | + | tig0004809:52753-52772 | None:intergenic | 20.0% |
| !! | TCATTTGTTACGGATTATAT+AGG | - | tig0004809:46996-47015 | Msa1341300:intron | 25.0% |
| ! | GGATTATATAGGATAGTTAA+TGG | - | tig0004809:47007-47026 | Msa1341300:intron | 25.0% |
| ! | AAAAACAATATAGAGAGAGA+GGG | - | tig0004809:47094-47113 | Msa1341300:intron | 25.0% |
| !! | GATATTTGTACAACCATTTT+GGG | + | tig0004809:47146-47165 | None:intergenic | 25.0% |
| !! | TGATATTTGTACAACCATTT+TGG | + | tig0004809:47147-47166 | None:intergenic | 25.0% |
| ! | ATATGTTTGAAGATTAGGAT+TGG | - | tig0004809:47181-47200 | Msa1341300:CDS | 25.0% |
| ! | TATGTTTGAAGATTAGGATT+GGG | - | tig0004809:47182-47201 | Msa1341300:CDS | 25.0% |
| !!! | ATCTTTTTTCCAAAAACCAA+GGG | + | tig0004809:47697-47716 | None:intergenic | 25.0% |
| !!! | AAGTGCTATTTTCAAAATAG+GGG | + | tig0004809:48501-48520 | None:intergenic | 25.0% |
| !!! | TGTCACGTTTTTTTTTTTGT+TGG | - | tig0004809:47945-47964 | Msa1341300:CDS | 25.0% |
| ! | AACCAGATTAACACAAAATA+AGG | + | tig0004809:48178-48197 | None:intergenic | 25.0% |
| !! | TATTTTGTGCTATCTAAATG+TGG | - | tig0004809:48268-48287 | Msa1341300:CDS | 25.0% |
| !!! | AAGTGCTATTTTCAAAATAG+GGG | - | tig0004809:48501-48520 | Msa1341300:intron | 25.0% |
| ! | TCTATTTCACTAGACATATT+TGG | - | tig0004809:48930-48949 | Msa1341300:intron | 25.0% |
| ! | GAACAAATTAGATTATCTCA+GGG | + | tig0004809:49010-49029 | None:intergenic | 25.0% |
| ! | TGAACAAATTAGATTATCTC+AGG | + | tig0004809:49011-49030 | None:intergenic | 25.0% |
| ! | ATACATAACAAACAAAGTTG+TGG | + | tig0004809:49180-49199 | None:intergenic | 25.0% |
| ! | GAAACAAATTAAAGTACGTA+AGG | + | tig0004809:49270-49289 | None:intergenic | 25.0% |
| ! | TCAAACTTCATAAAGTTAGA+AGG | + | tig0004809:49377-49396 | None:intergenic | 25.0% |
| ! | TAACTTTATGAAGTTTGAGA+AGG | - | tig0004809:49379-49398 | Msa1341300:intron | 25.0% |
| !!! | TCCAACTTGAACTAATTTTT+TGG | - | tig0004809:49465-49484 | Msa1341300:intron | 25.0% |
| !! | TCGAAGATATCTAATGATTT+TGG | - | tig0004809:49618-49637 | Msa1341300:intron | 25.0% |
| ! | AGATTTCTCAAAAGTTCAAA+GGG | + | tig0004809:50253-50272 | None:intergenic | 25.0% |
| ! | TAGATTTCTCAAAAGTTCAA+AGG | + | tig0004809:50254-50273 | None:intergenic | 25.0% |
| ! | AACATTTCCAGTAATTTCTT+TGG | - | tig0004809:50287-50306 | Msa1341300:CDS | 25.0% |
| !! | TGGTCATATCATCTTTTATT+TGG | - | tig0004809:50571-50590 | Msa1341300:intron | 25.0% |
| !!! | GTTATTTTCAACAGGTTTTA+TGG | + | tig0004809:50757-50776 | None:intergenic | 25.0% |
| ! | AGAGAGATGAATAAGTAATA+GGG | + | tig0004809:50844-50863 | None:intergenic | 25.0% |
| ! | TAGAGAGATGAATAAGTAAT+AGG | + | tig0004809:50845-50864 | None:intergenic | 25.0% |
| ! | ATTACTTATTCATCTCTCTA+AGG | - | tig0004809:50845-50864 | Msa1341300:intron | 25.0% |
| ! | TTACTTATTCATCTCTCTAA+GGG | - | tig0004809:50846-50865 | Msa1341300:intron | 25.0% |
| ! | GTATTACAACTTAATCATGA+AGG | - | tig0004809:50936-50955 | Msa1341300:intron | 25.0% |
| !! | CTTAAGGGTATGAATATTAT+TGG | - | tig0004809:50967-50986 | Msa1341300:intron | 25.0% |
| !! | GTGGAGATGAAAAATTATTT+TGG | - | tig0004809:51147-51166 | Msa1341300:intron | 25.0% |
| !!! | GAGATGAAAAATTATTTTGG+TGG | - | tig0004809:51150-51169 | Msa1341300:intron | 25.0% |
| !!! | AAAATTATTTTGGTGGTTTG+AGG | - | tig0004809:51157-51176 | Msa1341300:intron | 25.0% |
| !!! | TTGGCTGTATACTTTTTAAA+TGG | - | tig0004809:51272-51291 | Msa1341300:intron | 25.0% |
| !! | TAGACTTTGATAATACTAGA+TGG | + | tig0004809:51358-51377 | None:intergenic | 25.0% |
| ! | GCATCAAATTAAAGCTTAAA+AGG | + | tig0004809:51683-51702 | None:intergenic | 25.0% |
| ! | TATTACCATTCTACTATTCT+AGG | - | tig0004809:52167-52186 | Msa1341300:intron | 25.0% |
| ! | ATTACCATTCTACTATTCTA+GGG | - | tig0004809:52168-52187 | Msa1341300:intron | 25.0% |
| ! | TATATTAAATTATGGGATCC+TGG | - | tig0004809:52829-52848 | Msa1341300:intron | 25.0% |
| ! | AACTTTGTATTGAAGATGTA+CGG | - | tig0004809:52999-53018 | Msa1341300:CDS | 25.0% |
| ! | TTACAACATTTGAGAATTCT+AGG | + | tig0004809:53258-53277 | None:intergenic | 25.0% |
| ! | TCAATCACATTACAAACATT+TGG | + | tig0004809:53399-53418 | None:intergenic | 25.0% |
| AAGAAAGAAAGAAAGAACAG+TGG | - | tig0004809:46290-46309 | Msa1341300:three_prime_UTR | 30.0% | |
| !! | GTTTTTCAATTTCACTCAAC+CGG | - | tig0004809:46415-46434 | Msa1341300:three_prime_UTR | 30.0% |
| TATCACAAAACTGAAAGAGA+TGG | + | tig0004809:46597-46616 | None:intergenic | 30.0% | |
| !! | TTGTTTCAAGTTCTGCAAAA+CGG | + | tig0004809:46663-46682 | None:intergenic | 30.0% |
| GGCTAAAACAATATTGGATT+TGG | + | tig0004809:46828-46847 | None:intergenic | 30.0% | |
| !!! | TGTTTTAGCCTTTTATCCAT+TGG | - | tig0004809:46838-46857 | Msa1341300:intron | 30.0% |
| TTTATCGTCGAATTTAAACC+TGG | - | tig0004809:46877-46896 | Msa1341300:intron | 30.0% | |
| TTATCGTCGAATTTAAACCT+GGG | - | tig0004809:46878-46897 | Msa1341300:intron | 30.0% | |
| ! | ATACAGCATGTAACTTGTAA+TGG | + | tig0004809:46954-46973 | None:intergenic | 30.0% |
| CAAAAACAATATAGAGAGAG+AGG | - | tig0004809:47093-47112 | Msa1341300:intron | 30.0% | |
| TACCTTCAAAAAACGATACT+TGG | + | tig0004809:47320-47339 | None:intergenic | 30.0% | |
| !!! | TCTTTTTTCCAAAAACCAAG+GGG | + | tig0004809:47696-47715 | None:intergenic | 30.0% |
| !!! | CATCTTTTTTCCAAAAACCA+AGG | + | tig0004809:47698-47717 | None:intergenic | 30.0% |
| ! | TATAGGCTAAAATGCACTTT+TGG | - | tig0004809:47795-47814 | Msa1341300:intron | 30.0% |
| !!! | AGTGCTATTTTCAAAATAGG+GGG | + | tig0004809:48502-48521 | None:intergenic | 30.0% |
| ! | GTGAGAAATCTCACATTTTA+TGG | + | tig0004809:48040-48059 | None:intergenic | 30.0% |
| !!! | CAATTGGATTTTGGTTTGTA+CGG | + | tig0004809:48088-48107 | None:intergenic | 30.0% |
| GTACAAACCAAAATCCAATT+GGG | - | tig0004809:48087-48106 | Msa1341300:intron | 30.0% | |
| CAAAATCCAATTGGGAATTA+GGG | - | tig0004809:48095-48114 | Msa1341300:intron | 30.0% | |
| !!! | CTCCTTATTTTGTGTTAATC+TGG | - | tig0004809:48173-48192 | Msa1341300:intron | 30.0% |
| GTCTTAATCTGGTTGTTAAA+TGG | - | tig0004809:48234-48253 | Msa1341300:intron | 30.0% | |
| !!! | AGTGCTATTTTCAAAATAGG+GGG | - | tig0004809:48502-48521 | Msa1341300:intron | 30.0% |
| !! | AATCGCAACTTTTGAAAACT+TGG | - | tig0004809:48530-48549 | Msa1341300:intron | 30.0% |
| !! | ATCGCAACTTTTGAAAACTT+GGG | - | tig0004809:48531-48550 | Msa1341300:intron | 30.0% |
| ! | ATTAGGCTAAAATGCACTTT+TGG | + | tig0004809:48560-48579 | None:intergenic | 30.0% |
| GAAGGATTTAATACAGATTG+AGG | + | tig0004809:48884-48903 | None:intergenic | 30.0% | |
| ! | CTGATCTTTAAAGGTATAGA+AGG | + | tig0004809:48902-48921 | None:intergenic | 30.0% |
| ATTGAGTCTCTGATCTTTAA+AGG | + | tig0004809:48911-48930 | None:intergenic | 30.0% | |
| TGCTCTATTTATCCTTTAAC+TGG | - | tig0004809:48957-48976 | Msa1341300:intron | 30.0% | |
| TTTATCCTTTAACTGGAGTT+TGG | - | tig0004809:48964-48983 | Msa1341300:intron | 30.0% | |
| ATTTGTATCACCCATTTAAC+AGG | + | tig0004809:49096-49115 | None:intergenic | 30.0% | |
| TATTTGTTCTGTACATACAG+AGG | + | tig0004809:49327-49346 | None:intergenic | 30.0% | |
| TCTGTATGTACAGAACAAAT+AGG | - | tig0004809:49326-49345 | Msa1341300:intron | 30.0% | |
| GTAAAGGTAAAATGGTAGAA+TGG | + | tig0004809:49423-49442 | None:intergenic | 30.0% | |
| GCCAAAAAATTAGTTCAAGT+TGG | + | tig0004809:49469-49488 | None:intergenic | 30.0% | |
| AGAGATTAGATAATAAGGAG+TGG | + | tig0004809:49974-49993 | None:intergenic | 30.0% | |
| GATGAAATATTGATATGCAG+GGG | + | tig0004809:50064-50083 | None:intergenic | 30.0% | |
| GGATGAAATATTGATATGCA+GGG | + | tig0004809:50065-50084 | None:intergenic | 30.0% | |
| CTGCATATCAATATTTCATC+CGG | - | tig0004809:50064-50083 | Msa1341300:intron | 30.0% | |
| AAAGATTAGATGATAAGGAG+TGG | + | tig0004809:50122-50141 | None:intergenic | 30.0% | |
| AAACACACCAAAGAAATTAC+TGG | + | tig0004809:50297-50316 | None:intergenic | 30.0% | |
| ! | CTAATCTTTTTCCAAGAAAC+TGG | + | tig0004809:50345-50364 | None:intergenic | 30.0% |
| CAGTTTCTTGGAAAAAGATT+AGG | - | tig0004809:50343-50362 | Msa1341300:CDS | 30.0% | |
| !!! | CGAATTTGTTTTTCAGGAAA+TGG | - | tig0004809:50381-50400 | Msa1341300:CDS | 30.0% |
| GATCAACTTTGACAATAAGT+TGG | + | tig0004809:50710-50729 | None:intergenic | 30.0% | |
| ATAAGTAATAGGGAACAAAC+AGG | + | tig0004809:50834-50853 | None:intergenic | 30.0% | |
| TATAGTCGAGTAATCATGAA+AGG | + | tig0004809:51012-51031 | None:intergenic | 30.0% | |
| CAAACAATTTACAACTGATG+AGG | - | tig0004809:51042-51061 | Msa1341300:intron | 30.0% | |
| TTGTTAACTATGTTAAGAGG+TGG | - | tig0004809:51128-51147 | Msa1341300:intron | 30.0% | |
| GAGAATAATGGCTTAGTTAT+AGG | - | tig0004809:51241-51260 | Msa1341300:intron | 30.0% | |
| TTAGTTATAGGCTTATAGCT+TGG | - | tig0004809:51253-51272 | Msa1341300:intron | 30.0% | |
| TAATTGTCTTCAGGAACTAA+TGG | - | tig0004809:51434-51453 | Msa1341300:intron | 30.0% | |
| AGTATTGTAATACGTGTTTC+AGG | - | tig0004809:51712-51731 | Msa1341300:intron | 30.0% | |
| AATAAATAGCATGGACATTC+AGG | + | tig0004809:51834-51853 | None:intergenic | 30.0% | |
| CTGTGAAGTGTGAATTATTA+TGG | - | tig0004809:51926-51945 | Msa1341300:intron | 30.0% | |
| CAAAGTAAACTAGTAGAAAC+TGG | + | tig0004809:51981-52000 | None:intergenic | 30.0% | |
| CTCAATAAAAATCTCAGTCA+GGG | + | tig0004809:52135-52154 | None:intergenic | 30.0% | |
| TCTCAATAAAAATCTCAGTC+AGG | + | tig0004809:52136-52155 | None:intergenic | 30.0% | |
| ! | ACTGAGATTTTTATTGAGAG+AGG | - | tig0004809:52137-52156 | Msa1341300:intron | 30.0% |
| TTTACCCTAGAATAGTAGAA+TGG | + | tig0004809:52175-52194 | None:intergenic | 30.0% | |
| AATAGCACAAACAAGAAGAA+AGG | + | tig0004809:52255-52274 | None:intergenic | 30.0% | |
| GAGTACTAAACTGTAAATGA+AGG | + | tig0004809:52335-52354 | None:intergenic | 30.0% | |
| ACATATGTTGTATGTACAAC+AGG | - | tig0004809:52616-52635 | Msa1341300:intron | 30.0% | |
| AAGATGCAAAGAAAATTTCC+AGG | + | tig0004809:52850-52869 | None:intergenic | 30.0% | |
| ACTTTGTATTGAAGATGTAC+GGG | - | tig0004809:53000-53019 | Msa1341300:CDS | 30.0% | |
| TAATTCCACATACAATGACA+CGG | + | tig0004809:53282-53301 | None:intergenic | 30.0% | |
| ATTAACTGTAAAAACACCGT+AGG | - | tig0004809:53319-53338 | Msa1341300:five_prime_UTR | 30.0% | |
| GCTAGATATACAATAACCTA+CGG | + | tig0004809:53338-53357 | None:intergenic | 30.0% | |
| GTTATTGTATATCTAGCCAT+TGG | - | tig0004809:53341-53360 | Msa1341300:five_prime_UTR | 30.0% | |
| !!! | AAATTTTAACTGCCAACCAA+TGG | + | tig0004809:53360-53379 | None:intergenic | 30.0% |
| !! | TAATATTGGTTTGTTGTCGA+TGG | - | tig0004809:53432-53451 | Msa1341300:five_prime_UTR | 30.0% |
| ATCCAATCATATATCTCTCG+CGG | - | tig0004809:46370-46389 | Msa1341300:three_prime_UTR | 35.0% | |
| AATTCCCAGTTTCTACAAGA+AGG | - | tig0004809:46741-46760 | Msa1341300:intron | 35.0% | |
| ACTACATGCCAATGGATAAA+AGG | + | tig0004809:46849-46868 | None:intergenic | 35.0% | |
| TTTGTCAAACTACATGCCAA+TGG | + | tig0004809:46857-46876 | None:intergenic | 35.0% | |
| ! | TTCTTCTCTCCTCTTCTTTT+GGG | - | tig0004809:47069-47088 | Msa1341300:intron | 35.0% |
| !! | TGTTTTTGTCCCAAAAGAAG+AGG | + | tig0004809:47081-47100 | None:intergenic | 35.0% |
| GAGTATGAATTGTCCCAAAA+TGG | - | tig0004809:47130-47149 | Msa1341300:CDS | 35.0% | |
| ! | TTCTTCTAGAAACCTGAAGA+GGG | - | tig0004809:47265-47284 | Msa1341300:CDS | 35.0% |
| TTTGTTGAATGCCGATGATT+TGG | - | tig0004809:47437-47456 | Msa1341300:intron | 35.0% | |
| ATATGCACCACAAAGTTCAT+GGG | - | tig0004809:47661-47680 | Msa1341300:intron | 35.0% | |
| !! | ATCGCAACTTTTGGAAACTT+GGG | + | tig0004809:47824-47843 | None:intergenic | 35.0% |
| !! | AATCGCAACTTTTGGAAACT+TGG | + | tig0004809:47825-47844 | None:intergenic | 35.0% |
| !!! | GTGCTATTTTCAAAATAGGG+GGG | + | tig0004809:48503-48522 | None:intergenic | 35.0% |
| TTTGACCGAGTCAAAATCAA+GGG | + | tig0004809:48440-48459 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTGTTGGCCATGC+TGG | - | tig0004809:47954-47973 | Msa1341300:intron | 35.0% |
| ! | GGTTTCTAATCTGGAATGAA+GGG | + | tig0004809:48067-48086 | None:intergenic | 35.0% |
| CGTACAAACCAAAATCCAAT+TGG | - | tig0004809:48086-48105 | Msa1341300:intron | 35.0% | |
| ! | CCTAATTCCCAATTGGATTT+TGG | + | tig0004809:48097-48116 | None:intergenic | 35.0% |
| CCAAAATCCAATTGGGAATT+AGG | - | tig0004809:48094-48113 | Msa1341300:intron | 35.0% | |
| ACTTAACCCTAATTCCCAAT+TGG | + | tig0004809:48104-48123 | None:intergenic | 35.0% | |
| ! | TTTGAAATGAGAGTGGGATT+TGG | + | tig0004809:48134-48153 | None:intergenic | 35.0% |
| TTTGACCGAGTCAAAATCAA+GGG | - | tig0004809:48440-48459 | Msa1341300:intron | 35.0% | |
| !!! | GTGCTATTTTCAAAATAGGG+GGG | - | tig0004809:48503-48522 | Msa1341300:intron | 35.0% |
| !! | TCGCAACTTTTGAAAACTTG+GGG | - | tig0004809:48532-48551 | Msa1341300:intron | 35.0% |
| TGAATGTAAGAGTCTCTAGT+GGG | + | tig0004809:48726-48745 | None:intergenic | 35.0% | |
| ATGAATGTAAGAGTCTCTAG+TGG | + | tig0004809:48727-48746 | None:intergenic | 35.0% | |
| TTACATTCATGCGAGCTTTA+TGG | - | tig0004809:48737-48756 | Msa1341300:intron | 35.0% | |
| ! | TACATTCATGCGAGCTTTAT+GGG | - | tig0004809:48738-48757 | Msa1341300:intron | 35.0% |
| ! | GGGATGGATATTGACTATTA+GGG | + | tig0004809:48778-48797 | None:intergenic | 35.0% |
| GAATTACCGAACTAAAAGCA+TGG | + | tig0004809:48805-48824 | None:intergenic | 35.0% | |
| !! | TGTGGTAAATTTTGAGAACG+AGG | + | tig0004809:49162-49181 | None:intergenic | 35.0% |
| TAGAAGGACTAAAGAATCGT+CGG | + | tig0004809:49361-49380 | None:intergenic | 35.0% | |
| TTAATTCTCATCGATACCTG+TGG | - | tig0004809:49497-49516 | Msa1341300:intron | 35.0% | |
| ATACATTCATCAAGCTCAGA+TGG | + | tig0004809:49575-49594 | None:intergenic | 35.0% | |
| !!! | TCTAATGATTTTGGCTGTAC+AGG | - | tig0004809:49627-49646 | Msa1341300:intron | 35.0% |
| CGGATGAAATATTGATATGC+AGG | + | tig0004809:50066-50085 | None:intergenic | 35.0% | |
| GATCAATCCACATAGATTGT+TGG | + | tig0004809:50090-50109 | None:intergenic | 35.0% | |
| AAGTTCAAAGGGACCAAAAA+GGG | + | tig0004809:50242-50261 | None:intergenic | 35.0% | |
| AAAGTTCAAAGGGACCAAAA+AGG | + | tig0004809:50243-50262 | None:intergenic | 35.0% | |
| AAGTTGCATTTCCAGTTTCT+TGG | - | tig0004809:50331-50350 | Msa1341300:CDS | 35.0% | |
| ! | GACTGATTCATATAGATGCT+AGG | - | tig0004809:50538-50557 | Msa1341300:intron | 35.0% |
| TTTATTCGAAAGCTGCAATC+TGG | + | tig0004809:50662-50681 | None:intergenic | 35.0% | |
| ATGAAGGGCTTGTATCTTAA+GGG | - | tig0004809:50952-50971 | Msa1341300:intron | 35.0% | |
| GTCAAGTTAATGTGTGATAG+AGG | + | tig0004809:51102-51121 | None:intergenic | 35.0% | |
| TGGCTTAGCTGAAATTGATT+GGG | + | tig0004809:51323-51342 | None:intergenic | 35.0% | |
| TTGGCTTAGCTGAAATTGAT+TGG | + | tig0004809:51324-51343 | None:intergenic | 35.0% | |
| CTAGATGGATGAACATATGT+TGG | + | tig0004809:51343-51362 | None:intergenic | 35.0% | |
| GAGTTGAATACTATGATGCT+TGG | + | tig0004809:51511-51530 | None:intergenic | 35.0% | |
| AACTGTGAAATATGAGCAAC+AGG | + | tig0004809:51611-51630 | None:intergenic | 35.0% | |
| TGTTGCTCATATTTCACAGT+TGG | - | tig0004809:51610-51629 | Msa1341300:intron | 35.0% | |
| AATCAGTGTGATAGTAGCAA+TGG | + | tig0004809:51895-51914 | None:intergenic | 35.0% | |
| TAAACATGTCTGCGGAAAAA+TGG | + | tig0004809:52046-52065 | None:intergenic | 35.0% | |
| AAGAGCAATAAACATGTCTG+CGG | + | tig0004809:52054-52073 | None:intergenic | 35.0% | |
| GCTCTTGATAAAGATTCAAG+CGG | - | tig0004809:52068-52087 | Msa1341300:intron | 35.0% | |
| GTTATTACTAACAGTAGCCA+TGG | - | tig0004809:52209-52228 | Msa1341300:CDS | 35.0% | |
| !! | GTGCTATTATTTTTCACTGC+TGG | - | tig0004809:52267-52286 | Msa1341300:intron | 35.0% |
| ATTGCAACATATTTCAAGCC+AGG | - | tig0004809:52290-52309 | Msa1341300:intron | 35.0% | |
| TTGCAACATATTTCAAGCCA+GGG | - | tig0004809:52291-52310 | Msa1341300:intron | 35.0% | |
| !! | GATGGATTTTGAGAGTTTCT+TGG | - | tig0004809:52452-52471 | Msa1341300:intron | 35.0% |
| GAGTTTCTTGGACTTTAATC+TGG | - | tig0004809:52464-52483 | Msa1341300:intron | 35.0% | |
| ACAAATATGTCAAGCCTTCT+GGG | + | tig0004809:52509-52528 | None:intergenic | 35.0% | |
| AACAAATATGTCAAGCCTTC+TGG | + | tig0004809:52510-52529 | None:intergenic | 35.0% | |
| AGTGAATATCTGCTGTAGTA+AGG | + | tig0004809:52563-52582 | None:intergenic | 35.0% | |
| ! | CAGATATTCACTCTCTTTTC+AGG | - | tig0004809:52571-52590 | Msa1341300:intron | 35.0% |
| ! | TTCTTTAGGAAGACTGTATC+AGG | + | tig0004809:52739-52758 | None:intergenic | 35.0% |
| ! | ACTGTTTATTTGAGACTTGC+AGG | + | tig0004809:52799-52818 | None:intergenic | 35.0% |
| !! | GTACACCATAAATGGATTGA+TGG | - | tig0004809:52965-52984 | Msa1341300:CDS | 35.0% |
| CAACAGAGAAAATCTTCTAC+AGG | - | tig0004809:53150-53169 | Msa1341300:CDS | 35.0% | |
| AATTCCACATACAATGACAC+GGG | + | tig0004809:53281-53300 | None:intergenic | 35.0% | |
| TTGTATATCTAGCCATTGGT+TGG | - | tig0004809:53345-53364 | Msa1341300:five_prime_UTR | 35.0% | |
| TTAGGACAAATAGGTGTAGG+AGG | - | tig0004809:46241-46260 | Msa1341300:three_prime_UTR | 40.0% | |
| TCCAATCATATATCTCTCGC+GGG | - | tig0004809:46371-46390 | Msa1341300:three_prime_UTR | 40.0% | |
| ATACGAACCCATCAAAGCTT+CGG | + | tig0004809:46564-46583 | None:intergenic | 40.0% | |
| CATGCCTTCTTGTAGAAACT+GGG | + | tig0004809:46748-46767 | None:intergenic | 40.0% | |
| ACATGCCTTCTTGTAGAAAC+TGG | + | tig0004809:46749-46768 | None:intergenic | 40.0% | |
| ! | CTTTTCTTATCAACGAACCC+AGG | + | tig0004809:46898-46917 | None:intergenic | 40.0% |
| ! | AATGGTCTGCTCTAGATATC+AGG | + | tig0004809:46936-46955 | None:intergenic | 40.0% |
| CAAAAGAAGAGGAGAGAAGA+AGG | + | tig0004809:47070-47089 | None:intergenic | 40.0% | |
| ! | CTTCTTCTCTCCTCTTCTTT+TGG | - | tig0004809:47068-47087 | Msa1341300:intron | 40.0% |
| AACAATATAGAGAGAGAGGG+AGG | - | tig0004809:47097-47116 | Msa1341300:intron | 40.0% | |
| ACAATATAGAGAGAGAGGGA+GGG | - | tig0004809:47098-47117 | Msa1341300:intron | 40.0% | |
| AGATTAGGATTGGGTTACTG+TGG | - | tig0004809:47191-47210 | Msa1341300:CDS | 40.0% | |
| ! | CTTCTTCTAGAAACCTGAAG+AGG | - | tig0004809:47264-47283 | Msa1341300:CDS | 40.0% |
| !!! | GGCCAAGTATCGTTTTTTGA+AGG | - | tig0004809:47315-47334 | Msa1341300:intron | 40.0% |
| CTCTATCTTTGCTTAGACAG+TGG | - | tig0004809:47356-47375 | Msa1341300:intron | 40.0% | |
| TTCTCAATTAGTGACGTTGC+TGG | - | tig0004809:47388-47407 | Msa1341300:intron | 40.0% | |
| CCACATTGCATCCAAATCAT+CGG | + | tig0004809:47451-47470 | None:intergenic | 40.0% | |
| ! | CGATGATTTGGATGCAATGT+GGG | - | tig0004809:47449-47468 | Msa1341300:intron | 40.0% |
| !! | TGTGTGATTGATGATGCTAC+TGG | - | tig0004809:47489-47508 | Msa1341300:intron | 40.0% |
| GATATGCACCACAAAGTTCA+TGG | - | tig0004809:47660-47679 | Msa1341300:intron | 40.0% | |
| ! | TTTTCCAAAAACCAAGGGGT+TGG | + | tig0004809:47692-47711 | None:intergenic | 40.0% |
| AGATGAACACCTAGACTCTT+AGG | - | tig0004809:47713-47732 | Msa1341300:intron | 40.0% | |
| GATGAACACCTAGACTCTTA+GGG | - | tig0004809:47714-47733 | Msa1341300:intron | 40.0% | |
| TAGACTCTTAGGGTCTGTTT+GGG | - | tig0004809:47724-47743 | Msa1341300:intron | 40.0% | |
| !!! | TGATTTTGGAGGGCTTTAGA+GGG | - | tig0004809:47751-47770 | Msa1341300:intron | 40.0% |
| !! | TCGCAACTTTTGGAAACTTG+GGG | + | tig0004809:47823-47842 | None:intergenic | 40.0% |
| TTGCAAAAGGGCTGAAACTT+GGG | + | tig0004809:47884-47903 | None:intergenic | 40.0% | |
| TTTGCAAAAGGGCTGAAACT+TGG | + | tig0004809:47885-47904 | None:intergenic | 40.0% | |
| TTGACCGAGTCAAAATCAAG+GGG | + | tig0004809:48441-48460 | None:intergenic | 40.0% | |
| CTTTGACCGAGTCAAAATCA+AGG | + | tig0004809:48439-48458 | None:intergenic | 40.0% | |
| ! | CGGTTTCTAATCTGGAATGA+AGG | + | tig0004809:48068-48087 | None:intergenic | 40.0% |
| GGTTTGTACGGTTTCTAATC+TGG | + | tig0004809:48076-48095 | None:intergenic | 40.0% | |
| !! | ACGTGCTTTGAAATGAGAGT+GGG | + | tig0004809:48140-48159 | None:intergenic | 40.0% |
| !! | TACGTGCTTTGAAATGAGAG+TGG | + | tig0004809:48141-48160 | None:intergenic | 40.0% |
| ATCCACATAGGCTGTCTATA+TGG | - | tig0004809:48389-48408 | Msa1341300:intron | 40.0% | |
| CTTTGACCGAGTCAAAATCA+AGG | - | tig0004809:48439-48458 | Msa1341300:intron | 40.0% | |
| !!! | CATGACCCTTGATTTTGACT+CGG | + | tig0004809:48448-48467 | None:intergenic | 40.0% |
| !! | AAGGGTCATGGTTTTGCAAA+GGG | - | tig0004809:48458-48477 | Msa1341300:intron | 40.0% |
| !! | CGCAACTTTTGAAAACTTGG+GGG | - | tig0004809:48533-48552 | Msa1341300:intron | 40.0% |
| !! | GCAACTTTTGAAAACTTGGG+GGG | - | tig0004809:48534-48553 | Msa1341300:intron | 40.0% |
| ! | AAGAGTCTCTAGTGGGATTT+TGG | + | tig0004809:48719-48738 | None:intergenic | 40.0% |
| ! | GGGGATGGATATTGACTATT+AGG | + | tig0004809:48779-48798 | None:intergenic | 40.0% |
| ! | CGAACTAAAAGCATGGAATG+GGG | + | tig0004809:48798-48817 | None:intergenic | 40.0% |
| ! | CCGAACTAAAAGCATGGAAT+GGG | + | tig0004809:48799-48818 | None:intergenic | 40.0% |
| !! | CCCATTCCATGCTTTTAGTT+CGG | - | tig0004809:48796-48815 | Msa1341300:intron | 40.0% |
| ! | ACCGAACTAAAAGCATGGAA+TGG | + | tig0004809:48800-48819 | None:intergenic | 40.0% |
| ACACACCAAACTCCAGTTAA+AGG | + | tig0004809:48972-48991 | None:intergenic | 40.0% | |
| !! | GGTAAATTTTGAGAACGAGG+TGG | + | tig0004809:49159-49178 | None:intergenic | 40.0% |
| CTAAAGAATCGTCGGCATTT+AGG | + | tig0004809:49353-49372 | None:intergenic | 40.0% | |
| AAGTTTGAGAAGGATGAGCA+GGG | - | tig0004809:49389-49408 | Msa1341300:intron | 40.0% | |
| CGCATCACGTAAAGGTAAAA+TGG | + | tig0004809:49431-49450 | None:intergenic | 40.0% | |
| CAAAACAAACACAGAACCAC+AGG | + | tig0004809:49516-49535 | None:intergenic | 40.0% | |
| TGATATGAGTGAGCTTGATG+AGG | - | tig0004809:49672-49691 | Msa1341300:intron | 40.0% | |
| AAAAACATACGTGTGGCTGA+AGG | + | tig0004809:49711-49730 | None:intergenic | 40.0% | |
| GAGATGTTATGCAGGGAAAA+TGG | + | tig0004809:49913-49932 | None:intergenic | 40.0% | |
| AATCCACATAGATAGTTGGC+CGG | + | tig0004809:49938-49957 | None:intergenic | 40.0% | |
| GACCAATCCACATAGATAGT+TGG | + | tig0004809:49942-49961 | None:intergenic | 40.0% | |
| AATCCACATAGATTGTTGGC+CGG | + | tig0004809:50086-50105 | None:intergenic | 40.0% | |
| AGTTCAAAGGGACCAAAAAG+GGG | + | tig0004809:50241-50260 | None:intergenic | 40.0% | |
| !!! | TCTTTGGTGTGTTTTGAAGC+TGG | - | tig0004809:50303-50322 | Msa1341300:CDS | 40.0% |
| !!! | CTTTGGTGTGTTTTGAAGCT+GGG | - | tig0004809:50304-50323 | Msa1341300:CDS | 40.0% |
| ! | GAAATGGAAGCGTATATACG+AGG | - | tig0004809:50397-50416 | Msa1341300:intron | 40.0% |
| GTACGTAATTGTGCCAAGTT+GGG | + | tig0004809:50430-50449 | None:intergenic | 40.0% | |
| AGTACGTAATTGTGCCAAGT+TGG | + | tig0004809:50431-50450 | None:intergenic | 40.0% | |
| CTTGGCACAATTACGTACTA+TGG | - | tig0004809:50432-50451 | Msa1341300:intron | 40.0% | |
| CAATTACGTACTATGGATGC+AGG | - | tig0004809:50439-50458 | Msa1341300:intron | 40.0% | |
| GCAGCAATACGACAATACAT+TGG | + | tig0004809:50472-50491 | None:intergenic | 40.0% | |
| ! | TTTTGTGATCCTCATAGACG+AGG | - | tig0004809:50508-50527 | Msa1341300:intron | 40.0% |
| !!! | AGATGCTAGGTGCTGTTTTA+TGG | - | tig0004809:50551-50570 | Msa1341300:intron | 40.0% |
| !! | ATTTTAATCGACAGCAGCAG+TGG | - | tig0004809:50879-50898 | Msa1341300:intron | 40.0% |
| CATGAAGGGCTTGTATCTTA+AGG | - | tig0004809:50951-50970 | Msa1341300:intron | 40.0% | |
| !! | TTTTGGTGGTTTGAGGTTGA+CGG | - | tig0004809:51164-51183 | Msa1341300:intron | 40.0% |
| CATTTAGTCATTGCACTAGC+CGG | - | tig0004809:51211-51230 | Msa1341300:intron | 40.0% | |
| ATTTAGTCATTGCACTAGCC+GGG | - | tig0004809:51212-51231 | Msa1341300:intron | 40.0% | |
| GGCTTAGCTGAAATTGATTG+GGG | + | tig0004809:51322-51341 | None:intergenic | 40.0% | |
| TGTGAAATATGAGCAACAGG+AGG | + | tig0004809:51608-51627 | None:intergenic | 40.0% | |
| !! | ATGTGGTGGGTATCTTACAT+TGG | - | tig0004809:51805-51824 | Msa1341300:intron | 40.0% |
| AAATAGCATGGACATTCAGG+AGG | + | tig0004809:51831-51850 | None:intergenic | 40.0% | |
| GAAGAAAGGAGAACAGACAA+GGG | + | tig0004809:52241-52260 | None:intergenic | 40.0% | |
| AGAAGAAAGGAGAACAGACA+AGG | + | tig0004809:52242-52261 | None:intergenic | 40.0% | |
| CAAATATGTCAAGCCTTCTG+GGG | + | tig0004809:52508-52527 | None:intergenic | 40.0% | |
| TTTCGTTGCCTTGATCTTCA+AGG | - | tig0004809:52528-52547 | Msa1341300:intron | 40.0% | |
| TTCGTTGCCTTGATCTTCAA+GGG | - | tig0004809:52529-52548 | Msa1341300:intron | 40.0% | |
| ! | GAATATTTTACCACGACTGC+TGG | - | tig0004809:52676-52695 | Msa1341300:intron | 40.0% |
| ACAGAGACGTACACCATAAA+TGG | - | tig0004809:52957-52976 | Msa1341300:CDS | 40.0% | |
| !! | CACCATAAATGGATTGATGG+TGG | - | tig0004809:52968-52987 | Msa1341300:CDS | 40.0% |
| TGCCACCATCAATCCATTTA+TGG | + | tig0004809:52973-52992 | None:intergenic | 40.0% | |
| AAGATGTACGGGATGAAATC+TGG | - | tig0004809:53011-53030 | Msa1341300:CDS | 40.0% | |
| AGATGTACGGGATGAAATCT+GGG | - | tig0004809:53012-53031 | Msa1341300:CDS | 40.0% | |
| AGATGACCTCAAGATCACAT+TGG | - | tig0004809:53051-53070 | Msa1341300:intron | 40.0% | |
| GACAAATAGGTGTAGGAGGT+TGG | - | tig0004809:46245-46264 | Msa1341300:three_prime_UTR | 45.0% | |
| TAAGCAACCGGACGCAAAAA+CGG | + | tig0004809:46329-46348 | None:intergenic | 45.0% | |
| ! | TTTTGCGTCCGGTTGCTTAT+CGG | - | tig0004809:46330-46349 | Msa1341300:three_prime_UTR | 45.0% |
| ! | GATTGGATCTGAGATACCGT+TGG | + | tig0004809:46358-46377 | None:intergenic | 45.0% |
| ACCCGCGAGAGATATATGAT+TGG | + | tig0004809:46375-46394 | None:intergenic | 45.0% | |
| GCGGGTTTCGATTAGAGTTA+GGG | - | tig0004809:46389-46408 | Msa1341300:three_prime_UTR | 45.0% | |
| ! | GAAGGTTGGTTGTCACAACA+TGG | + | tig0004809:47052-47071 | None:intergenic | 45.0% |
| AGAAGAGGAGAGAAGAAGGT+TGG | + | tig0004809:47066-47085 | None:intergenic | 45.0% | |
| TGACTGATTGATCCCTCTTC+AGG | + | tig0004809:47280-47299 | None:intergenic | 45.0% | |
| AACGATACTTGGCCAATCTC+TGG | + | tig0004809:47309-47328 | None:intergenic | 45.0% | |
| ! | CCGATGATTTGGATGCAATG+TGG | - | tig0004809:47448-47467 | Msa1341300:intron | 45.0% |
| TGATGCTACTGGTGCAGAAA+AGG | - | tig0004809:47500-47519 | Msa1341300:intron | 45.0% | |
| GAAGCAAACACGCAAACACA+TGG | + | tig0004809:47539-47558 | None:intergenic | 45.0% | |
| !! | GTAACCAACCCCTTGGTTTT+TGG | - | tig0004809:47685-47704 | Msa1341300:intron | 45.0% |
| CAAACAGACCCTAAGAGTCT+AGG | + | tig0004809:47725-47744 | None:intergenic | 45.0% | |
| CTAGACTCTTAGGGTCTGTT+TGG | - | tig0004809:47723-47742 | Msa1341300:intron | 45.0% | |
| ! | TCTGTTTGGGAGGGTGATTT+TGG | - | tig0004809:47737-47756 | Msa1341300:intron | 45.0% |
| ! | TTTGGGAGGGTGATTTTGGA+GGG | - | tig0004809:47741-47760 | Msa1341300:intron | 45.0% |
| !! | GTGATTTTGGAGGGCTTTAG+AGG | - | tig0004809:47750-47769 | Msa1341300:intron | 45.0% |
| !! | CGCAACTTTTGGAAACTTGG+GGG | + | tig0004809:47822-47841 | None:intergenic | 45.0% |
| ! | GGGGCAAAAATCGCAACTTT+TGG | + | tig0004809:48522-48541 | None:intergenic | 45.0% |
| TGCAAAAGGGCTGAAACTTG+GGG | + | tig0004809:47883-47902 | None:intergenic | 45.0% | |
| ! | GGGGTCAAGGTTTTGCAAAA+GGG | + | tig0004809:47896-47915 | None:intergenic | 45.0% |
| TGACCGAGTCAAAATCAAGG+GGG | + | tig0004809:48442-48461 | None:intergenic | 45.0% | |
| ! | TGAGAGTGGGATTTGGAGTT+TGG | + | tig0004809:48127-48146 | None:intergenic | 45.0% |
| TGCCATATAGACAGCCTATG+TGG | + | tig0004809:48394-48413 | None:intergenic | 45.0% | |
| CGAGTCAAAATCAAGGGTCA+TGG | - | tig0004809:48446-48465 | Msa1341300:intron | 45.0% | |
| !! | CAAGGGTCATGGTTTTGCAA+AGG | - | tig0004809:48457-48476 | Msa1341300:intron | 45.0% |
| !! | AGGGTCATGGTTTTGCAAAG+GGG | - | tig0004809:48459-48478 | Msa1341300:intron | 45.0% |
| TTTGCAAAGGGGCTGAAACT+TGG | - | tig0004809:48470-48489 | Msa1341300:intron | 45.0% | |
| TTGCAAAGGGGCTGAAACTT+GGG | - | tig0004809:48471-48490 | Msa1341300:intron | 45.0% | |
| !! | TCTCTAGTGGGATTTTGGAG+GGG | + | tig0004809:48714-48733 | None:intergenic | 45.0% |
| ! | GTCTCTAGTGGGATTTTGGA+GGG | + | tig0004809:48715-48734 | None:intergenic | 45.0% |
| ! | AGTCTCTAGTGGGATTTTGG+AGG | + | tig0004809:48716-48735 | None:intergenic | 45.0% |
| ! | CTAAAAGCATGGAATGGGGA+TGG | + | tig0004809:48794-48813 | None:intergenic | 45.0% |
| !! | GAGTTTGGTGTGTCATGCAA+TGG | - | tig0004809:48979-48998 | Msa1341300:intron | 45.0% |
| GATTTCAACACGCTCCTTCA+AGG | - | tig0004809:49038-49057 | Msa1341300:intron | 45.0% | |
| GGCAAAATCAGCATCCTTGA+AGG | + | tig0004809:49055-49074 | None:intergenic | 45.0% | |
| CTGTACATACAGAGGCAATG+TGG | + | tig0004809:49319-49338 | None:intergenic | 45.0% | |
| GAAGTTTGAGAAGGATGAGC+AGG | - | tig0004809:49388-49407 | Msa1341300:intron | 45.0% | |
| TTACCTTTACGTGATGCGCA+CGG | - | tig0004809:49433-49452 | Msa1341300:intron | 45.0% | |
| GAGCTTGATGAGGATTCTGA+TGG | - | tig0004809:49682-49701 | Msa1341300:intron | 45.0% | |
| TCCCTGCATAACATCTCATC+CGG | - | tig0004809:49916-49935 | Msa1341300:intron | 45.0% | |
| GGCCAACTATCTATGTGGAT+TGG | - | tig0004809:49937-49956 | Msa1341300:intron | 45.0% | |
| ! | TCGCAAGTCAATCCCCTTTT+TGG | - | tig0004809:50226-50245 | Msa1341300:intron | 45.0% |
| ! | ACGAGGTCTTATACCCAACT+TGG | - | tig0004809:50414-50433 | Msa1341300:intron | 45.0% |
| TGATCCTCATAGACGAGGTT+TGG | - | tig0004809:50513-50532 | Msa1341300:intron | 45.0% | |
| TCATCCAAACCTCGTCTATG+AGG | + | tig0004809:50520-50539 | None:intergenic | 45.0% | |
| ! | TTTGGTGGTTTGAGGTTGAC+GGG | - | tig0004809:51165-51184 | Msa1341300:intron | 45.0% |
| CGGCTAGTGCAATGACTAAA+TGG | + | tig0004809:51213-51232 | None:intergenic | 45.0% | |
| TTTAGTCATTGCACTAGCCG+GGG | - | tig0004809:51213-51232 | Msa1341300:intron | 45.0% | |
| GCTGCTGAGTAATTGTCTTC+AGG | - | tig0004809:51425-51444 | Msa1341300:intron | 45.0% | |
| GGAACTAATGGAGCTTCATC+AGG | - | tig0004809:51446-51465 | Msa1341300:intron | 45.0% | |
| CTAATGGAGCTTCATCAGGT+AGG | - | tig0004809:51450-51469 | Msa1341300:intron | 45.0% | |
| AGAAGTCACAGACACAGAAC+AGG | - | tig0004809:51745-51764 | Msa1341300:intron | 45.0% | |
| ACACAGAACAGGCTGAAAAC+TGG | - | tig0004809:51756-51775 | Msa1341300:intron | 45.0% | |
| CCAGCTAACACAGAATGGTA+AGG | + | tig0004809:51957-51976 | None:intergenic | 45.0% | |
| CCTTACCATTCTGTGTTAGC+TGG | - | tig0004809:51954-51973 | Msa1341300:intron | 45.0% | |
| AGCTGCGAGAATATGCAGAT+GGG | - | tig0004809:52108-52127 | Msa1341300:intron | 45.0% | |
| ! | AGAGTTGTGGTGGAAAGACA+AGG | - | tig0004809:52427-52446 | Msa1341300:intron | 45.0% |
| ! | GAGTTGTGGTGGAAAGACAA+GGG | - | tig0004809:52428-52447 | Msa1341300:intron | 45.0% |
| GAAAACAAAGACACCCCAGA+AGG | - | tig0004809:52492-52511 | Msa1341300:intron | 45.0% | |
| TTGCCTTGATCTTCAAGGGA+GGG | - | tig0004809:52533-52552 | Msa1341300:intron | 45.0% | |
| TTCTATACTTCCAGCAGTCG+TGG | + | tig0004809:52689-52708 | None:intergenic | 45.0% | |
| ! | ACGACTGCTGGAAGTATAGA+AGG | - | tig0004809:52688-52707 | Msa1341300:intron | 45.0% |
| ! | CGACTGCTGGAAGTATAGAA+GGG | - | tig0004809:52689-52708 | Msa1341300:intron | 45.0% |
| ! | GACTGCTGGAAGTATAGAAG+GGG | - | tig0004809:52690-52709 | Msa1341300:intron | 45.0% |
| GACTGTATCAGGCAACATCT+CGG | + | tig0004809:52728-52747 | None:intergenic | 45.0% | |
| CTTGCTCAAGCACTACAAGT+AGG | + | tig0004809:52776-52795 | None:intergenic | 45.0% | |
| ! | ACGGGATGAAATCTGGGATA+TGG | - | tig0004809:53018-53037 | Msa1341300:intron | 45.0% |
| GATCAGCCAATGTGATCTTG+AGG | + | tig0004809:53060-53079 | None:intergenic | 45.0% | |
| ! | GATCACATTGGCTGATCTAC+TGG | - | tig0004809:53063-53082 | Msa1341300:intron | 45.0% |
| ! | TACAGTACCACCTTGTTTGC+AGG | + | tig0004809:53089-53108 | None:intergenic | 45.0% |
| CTAGCATGCTCATAGATGTG+CGG | - | tig0004809:53110-53129 | Msa1341300:intron | 45.0% | |
| TAGCATGCTCATAGATGTGC+GGG | - | tig0004809:53111-53130 | Msa1341300:intron | 45.0% | |
| ACAGGAAGAAGAAGAACCAG+AGG | - | tig0004809:53168-53187 | Msa1341300:CDS | 45.0% | |
| GAGCAGATCTATTCTTCCTC+TGG | + | tig0004809:53187-53206 | None:intergenic | 45.0% | |
| GAGGAAGAATAGATCTGCTC+CGG | - | tig0004809:53187-53206 | Msa1341300:CDS | 45.0% | |
| AGGAAGAATAGATCTGCTCC+GGG | - | tig0004809:53188-53207 | Msa1341300:CDS | 45.0% | |
| AGCTTTCTGTTAGCATGACC+CGG | + | tig0004809:53209-53228 | None:intergenic | 45.0% | |
| ! | GTAACCCGTGTCATTGTATG+TGG | - | tig0004809:53274-53293 | Msa1341300:five_prime_UTR | 45.0% |
| !! | AAATTAGTATATTAAATTAT+GGG | - | tig0004809:52822-52841 | Msa1341300:intron | 5.0% |
| !! | GCTTTCACCGTTTTTGCGTC+CGG | - | tig0004809:46319-46338 | Msa1341300:three_prime_UTR | 50.0% |
| CGCGGGTTTCGATTAGAGTT+AGG | - | tig0004809:46388-46407 | Msa1341300:three_prime_UTR | 50.0% | |
| ! | GGGATTTTCCTCTGGGTTTG+AGG | + | tig0004809:46473-46492 | None:intergenic | 50.0% |
| CGATGAAACGACGGAGATTG+CGG | + | tig0004809:46520-46539 | None:intergenic | 50.0% | |
| CGCAATCTCCGTCGTTTCAT+CGG | - | tig0004809:46518-46537 | Msa1341300:CDS | 50.0% | |
| ! | TCTCGGATCCGAAGCTTTGA+TGG | - | tig0004809:46553-46572 | Msa1341300:CDS | 50.0% |
| ! | CTCGGATCCGAAGCTTTGAT+GGG | - | tig0004809:46554-46573 | Msa1341300:CDS | 50.0% |
| !! | CAGAAGAAAAGCGCTGAAGC+TGG | - | tig0004809:46715-46734 | Msa1341300:CDS | 50.0% |
| CAGTCAGAGAGTCCAGAGAT+TGG | - | tig0004809:47294-47313 | Msa1341300:intron | 50.0% | |
| GGTTACGCCCATGAACTTTG+TGG | + | tig0004809:47671-47690 | None:intergenic | 50.0% | |
| ACTCTTAGGGTCTGTTTGGG+AGG | - | tig0004809:47727-47746 | Msa1341300:intron | 50.0% | |
| CTCTTAGGGTCTGTTTGGGA+GGG | - | tig0004809:47728-47747 | Msa1341300:intron | 50.0% | |
| ! | GTTTGGGAGGGTGATTTTGG+AGG | - | tig0004809:47740-47759 | Msa1341300:intron | 50.0% |
| CAAAAGGGCTGAAACTTGGG+GGG | + | tig0004809:47881-47900 | None:intergenic | 50.0% | |
| GCAAAAGGGCTGAAACTTGG+GGG | + | tig0004809:47882-47901 | None:intergenic | 50.0% | |
| ! | GGGGGTCAAGGTTTTGCAAA+AGG | + | tig0004809:47897-47916 | None:intergenic | 50.0% |
| GTCAAAATCAAGGGGGGTCA+AGG | + | tig0004809:47909-47928 | None:intergenic | 50.0% | |
| !!! | GACCCCCCTTGATTTTGACT+CGG | - | tig0004809:47910-47929 | Msa1341300:CDS | 50.0% |
| GACCGAGTCAAAATCAAGGG+GGG | + | tig0004809:48443-48462 | None:intergenic | 50.0% | |
| TGCAAAGGGGCTGAAACTTG+GGG | - | tig0004809:48472-48491 | Msa1341300:intron | 50.0% | |
| TGATCCCACGTAGTGCGATA+CGG | + | tig0004809:48847-48866 | None:intergenic | 50.0% | |
| ACTACGTGGGATCAGCAGTT+TGG | - | tig0004809:48853-48872 | Msa1341300:intron | 50.0% | |
| AGAATAGCACTCGAGGGCAA+AGG | + | tig0004809:49238-49257 | None:intergenic | 50.0% | |
| CCGTCAAGAATAGCACTCGA+GGG | + | tig0004809:49244-49263 | None:intergenic | 50.0% | |
| ! | CCCTCGAGTGCTATTCTTGA+CGG | - | tig0004809:49241-49260 | Msa1341300:CDS | 50.0% |
| TCCGTCAAGAATAGCACTCG+AGG | + | tig0004809:49245-49264 | None:intergenic | 50.0% | |
| GCCGGATGAGATGTTATGCA+GGG | + | tig0004809:49920-49939 | None:intergenic | 50.0% | |
| CATCCGGCCAACTATCTATG+TGG | - | tig0004809:49932-49951 | Msa1341300:intron | 50.0% | |
| CATCCGGCCAACAATCTATG+TGG | - | tig0004809:50080-50099 | Msa1341300:intron | 50.0% | |
| !! | CTGATGAGGCTTTGAGCGTT+AGG | - | tig0004809:51056-51075 | Msa1341300:intron | 50.0% |
| ! | TTGGTGGTTTGAGGTTGACG+GGG | - | tig0004809:51166-51185 | Msa1341300:intron | 50.0% |
| ATATGAGCAACAGGAGGACC+TGG | + | tig0004809:51602-51621 | None:intergenic | 50.0% | |
| ATACCCACCACATACACGTC+GGG | + | tig0004809:51798-51817 | None:intergenic | 50.0% | |
| GATACCCACCACATACACGT+CGG | + | tig0004809:51799-51818 | None:intergenic | 50.0% | |
| CTGGACCAGCTAACACAGAA+TGG | + | tig0004809:51962-51981 | None:intergenic | 50.0% | |
| GAGCTGCGAGAATATGCAGA+TGG | - | tig0004809:52107-52126 | Msa1341300:intron | 50.0% | |
| ACAGACAAGGGCAGTAACCA+TGG | + | tig0004809:52229-52248 | None:intergenic | 50.0% | |
| CACAATGCACATTGACACCC+TGG | + | tig0004809:52311-52330 | None:intergenic | 50.0% | |
| ACATGTTCGTCGAACACTGC+AGG | + | tig0004809:52396-52415 | None:intergenic | 50.0% | |
| TTCCACCACAACTCTTTCCG+CGG | + | tig0004809:52422-52441 | None:intergenic | 50.0% | |
| TGGTGGAAAGACAAGGGAGA+TGG | - | tig0004809:52434-52453 | Msa1341300:intron | 50.0% | |
| GTTGCCTTGATCTTCAAGGG+AGG | - | tig0004809:52532-52551 | Msa1341300:intron | 50.0% | |
| TGCCTTGATCTTCAAGGGAG+GGG | - | tig0004809:52534-52553 | Msa1341300:intron | 50.0% | |
| AACCCCTCCCTTGAAGATCA+AGG | + | tig0004809:52539-52558 | None:intergenic | 50.0% | |
| TCAGGCAACATCTCGGCATA+TGG | + | tig0004809:52721-52740 | None:intergenic | 50.0% | |
| GTGATCTTGAGGTCATCTGC+TGG | + | tig0004809:53049-53068 | None:intergenic | 50.0% | |
| ! | GATCTACTGGCCTGCAAACA+AGG | - | tig0004809:53076-53095 | Msa1341300:intron | 50.0% |
| AGCATGCTCATAGATGTGCG+GGG | - | tig0004809:53112-53131 | Msa1341300:intron | 50.0% | |
| TCATAGATGTGCGGGGTTTC+TGG | - | tig0004809:53119-53138 | Msa1341300:intron | 50.0% | |
| CATAGATGTGCGGGGTTTCT+GGG | - | tig0004809:53120-53139 | Msa1341300:intron | 50.0% | |
| !! | CGTTGGCTCCGATAAGCAAC+CGG | + | tig0004809:46341-46360 | None:intergenic | 55.0% |
| CGGTTGCTTATCGGAGCCAA+CGG | - | tig0004809:46339-46358 | Msa1341300:three_prime_UTR | 55.0% | |
| !! | CTGGGTTTGAGGAGCGTCAT+GGG | + | tig0004809:46462-46481 | None:intergenic | 55.0% |
| !! | TCTGGGTTTGAGGAGCGTCA+TGG | + | tig0004809:46463-46482 | None:intergenic | 55.0% |
| ATGACGCTCCTCAAACCCAG+AGG | - | tig0004809:46462-46481 | Msa1341300:three_prime_UTR | 55.0% | |
| ! | TGCAGGGGGGATTTTCCTCT+GGG | + | tig0004809:46480-46499 | None:intergenic | 55.0% |
| ! | ATGCAGGGGGGATTTTCCTC+TGG | + | tig0004809:46481-46500 | None:intergenic | 55.0% |
| CTCCGTCGTTTCATCGGATC+CGG | - | tig0004809:46524-46543 | Msa1341300:CDS | 55.0% | |
| CACCGGATCCGATGAAACGA+CGG | + | tig0004809:46529-46548 | None:intergenic | 55.0% | |
| CAAAGCTTCGGATCCGAGAC+CGG | + | tig0004809:46552-46571 | None:intergenic | 55.0% | |
| !! | TTGGAGGGCTTTAGAGGGCT+AGG | - | tig0004809:47756-47775 | Msa1341300:intron | 55.0% |
| GCAAAGGGGCTGAAACTTGG+GGG | - | tig0004809:48473-48492 | Msa1341300:intron | 55.0% | |
| CAAAGGGGCTGAAACTTGGG+GGG | - | tig0004809:48474-48493 | Msa1341300:intron | 55.0% | |
| !! | CGGCTTGGTGGTTGTTGTTG+AGG | + | tig0004809:48827-48846 | None:intergenic | 55.0% |
| CAAGCCGTATCGCACTACGT+GGG | - | tig0004809:48840-48859 | Msa1341300:intron | 55.0% | |
| CTACCGTGCGCATCACGTAA+AGG | + | tig0004809:49439-49458 | None:intergenic | 55.0% | |
| CTTTACGTGATGCGCACGGT+AGG | - | tig0004809:49437-49456 | Msa1341300:intron | 55.0% | |
| GGCCGGATGAGATGTTATGC+AGG | + | tig0004809:49921-49940 | None:intergenic | 55.0% | |
| TTGAGGTTGACGGGGTAGCA+AGG | - | tig0004809:51174-51193 | Msa1341300:intron | 55.0% | |
| TGAGGTTGACGGGGTAGCAA+GGG | - | tig0004809:51175-51194 | Msa1341300:intron | 55.0% | |
| ! | TGTGGTTGGTCCTCTTGTCC+AGG | - | tig0004809:51581-51600 | Msa1341300:intron | 55.0% |
| AACAGGAGGACCTGGACAAG+AGG | + | tig0004809:51594-51613 | None:intergenic | 55.0% | |
| ACTTCTGCCCGACGTGTATG+TGG | - | tig0004809:51788-51807 | Msa1341300:intron | 55.0% | |
| TTCGACGAACATGTTCGCCG+CGG | - | tig0004809:52402-52421 | Msa1341300:CDS | 55.0% | |
| ! | CTACTGGCCTGCAAACAAGG+TGG | - | tig0004809:53079-53098 | Msa1341300:intron | 55.0% |
| CAACCGGCGATGTACAGCGA+CGG | - | tig0004809:46431-46450 | Msa1341300:three_prime_UTR | 60.0% | |
| ACAGCATGGAGGATGCAGGG+GGG | + | tig0004809:46493-46512 | None:intergenic | 60.0% | |
| CACAGCATGGAGGATGCAGG+GGG | + | tig0004809:46494-46513 | None:intergenic | 60.0% | |
| CCACAGCATGGAGGATGCAG+GGG | + | tig0004809:46495-46514 | None:intergenic | 60.0% | |
| CCCACAGCATGGAGGATGCA+GGG | + | tig0004809:46496-46515 | None:intergenic | 60.0% | |
| CCCTGCATCCTCCATGCTGT+GGG | - | tig0004809:46493-46512 | Msa1341300:exon | 60.0% | |
| ACCCACAGCATGGAGGATGC+AGG | + | tig0004809:46497-46516 | None:intergenic | 60.0% | |
| ATTGCGGACCCACAGCATGG+AGG | + | tig0004809:46504-46523 | None:intergenic | 60.0% | |
| GAGATTGCGGACCCACAGCA+TGG | + | tig0004809:46507-46526 | None:intergenic | 60.0% | |
| CGTTTCATCGGATCCGGTGC+CGG | - | tig0004809:46530-46549 | Msa1341300:CDS | 60.0% | |
| CATGGGCGTAACCAACCCCT+TGG | - | tig0004809:47678-47697 | Msa1341300:intron | 60.0% | |
| ! | CGTAGTGCGATACGGCTTGG+TGG | + | tig0004809:48839-48858 | None:intergenic | 60.0% |
| CCACGTAGTGCGATACGGCT+TGG | + | tig0004809:48842-48861 | None:intergenic | 60.0% | |
| CCAAGCCGTATCGCACTACG+TGG | - | tig0004809:48839-48858 | Msa1341300:intron | 60.0% | |
| TCTGCCCGACGTGTATGTGG+TGG | - | tig0004809:51791-51810 | Msa1341300:intron | 60.0% | |
| CTGCCCGACGTGTATGTGGT+GGG | - | tig0004809:51792-51811 | Msa1341300:intron | 60.0% | |
| GTTCGCCGCGGAAAGAGTTG+TGG | - | tig0004809:52414-52433 | Msa1341300:intron | 60.0% | |
| TCGCCGTCGCTGTACATCGC+CGG | + | tig0004809:46437-46456 | None:intergenic | 65.0% | |
| CCCCTGCATCCTCCATGCTG+TGG | - | tig0004809:46492-46511 | Msa1341300:exon | 65.0% | |
| !! | ATCGGATCCGGTGCCGGTCT+CGG | - | tig0004809:46536-46555 | Msa1341300:CDS | 65.0% |
| TTCGGATCCGAGACCGGCAC+CGG | + | tig0004809:46546-46565 | None:intergenic | 65.0% | |
| CGCCGCGGAAAGAGTTGTGG+TGG | - | tig0004809:52417-52436 | Msa1341300:intron | 65.0% | |
| TGTGTGTGCGTGCGCGCGCG+CGG | - | tig0004809:51557-51576 | Msa1341300:intron | 75.0% | |
| ! | GTGTGTGCGTGCGCGCGCGC+GGG | - | tig0004809:51558-51577 | Msa1341300:intron | 80.0% |
| ! | TGCGCGCGCGCGGGTGTGGT+TGG | - | tig0004809:51567-51586 | Msa1341300:intron | 80.0% |
| ! | TGCGTGCGCGCGCGCGGGTG+TGG | - | tig0004809:51563-51582 | Msa1341300:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0004809 | gene | 46239 | 53463 | 46239 | ID=Msa1341300;Name=Msa1341300 |
| tig0004809 | mRNA | 46239 | 53463 | 46239 | ID=Msa1341300-mRNA-1;Parent=Msa1341300;Name=Msa1341300-mRNA-1;_AED=0.11;_eAED=0.11;_QI=201|1|1|1|1|1|12|265|475 |
| tig0004809 | exon | 46239 | 46741 | 46239 | ID=Msa1341300-mRNA-1:exon:3096;Parent=Msa1341300-mRNA-1 |
| tig0004809 | exon | 47110 | 47302 | 47110 | ID=Msa1341300-mRNA-1:exon:3095;Parent=Msa1341300-mRNA-1 |
| tig0004809 | exon | 47544 | 47645 | 47544 | ID=Msa1341300-mRNA-1:exon:3094;Parent=Msa1341300-mRNA-1 |
| tig0004809 | exon | 47893 | 47968 | 47893 | ID=Msa1341300-mRNA-1:exon:3093;Parent=Msa1341300-mRNA-1 |
| tig0004809 | exon | 48235 | 48299 | 48235 | ID=Msa1341300-mRNA-1:exon:3092;Parent=Msa1341300-mRNA-1 |
| tig0004809 | exon | 49173 | 49305 | 49173 | ID=Msa1341300-mRNA-1:exon:3091;Parent=Msa1341300-mRNA-1 |
| tig0004809 | exon | 49982 | 50053 | 49982 | ID=Msa1341300-mRNA-1:exon:3090;Parent=Msa1341300-mRNA-1 |
| tig0004809 | exon | 50248 | 50406 | 50248 | ID=Msa1341300-mRNA-1:exon:3089;Parent=Msa1341300-mRNA-1 |
| tig0004809 | exon | 52181 | 52279 | 52181 | ID=Msa1341300-mRNA-1:exon:3088;Parent=Msa1341300-mRNA-1 |
| tig0004809 | exon | 52366 | 52428 | 52366 | ID=Msa1341300-mRNA-1:exon:3087;Parent=Msa1341300-mRNA-1 |
| tig0004809 | exon | 52940 | 53031 | 52940 | ID=Msa1341300-mRNA-1:exon:3086;Parent=Msa1341300-mRNA-1 |
| tig0004809 | exon | 53127 | 53463 | 53127 | ID=Msa1341300-mRNA-1:exon:3085;Parent=Msa1341300-mRNA-1 |
| tig0004809 | five_prime_UTR | 53263 | 53463 | 53263 | ID=Msa1341300-mRNA-1:five_prime_utr;Parent=Msa1341300-mRNA-1 |
| tig0004809 | CDS | 53127 | 53262 | 53127 | ID=Msa1341300-mRNA-1:cds;Parent=Msa1341300-mRNA-1 |
| tig0004809 | CDS | 52940 | 53031 | 52940 | ID=Msa1341300-mRNA-1:cds;Parent=Msa1341300-mRNA-1 |
| tig0004809 | CDS | 52366 | 52428 | 52366 | ID=Msa1341300-mRNA-1:cds;Parent=Msa1341300-mRNA-1 |
| tig0004809 | CDS | 52181 | 52279 | 52181 | ID=Msa1341300-mRNA-1:cds;Parent=Msa1341300-mRNA-1 |
| tig0004809 | CDS | 50248 | 50406 | 50248 | ID=Msa1341300-mRNA-1:cds;Parent=Msa1341300-mRNA-1 |
| tig0004809 | CDS | 49982 | 50053 | 49982 | ID=Msa1341300-mRNA-1:cds;Parent=Msa1341300-mRNA-1 |
| tig0004809 | CDS | 49173 | 49305 | 49173 | ID=Msa1341300-mRNA-1:cds;Parent=Msa1341300-mRNA-1 |
| tig0004809 | CDS | 48235 | 48299 | 48235 | ID=Msa1341300-mRNA-1:cds;Parent=Msa1341300-mRNA-1 |
| tig0004809 | CDS | 47893 | 47968 | 47893 | ID=Msa1341300-mRNA-1:cds;Parent=Msa1341300-mRNA-1 |
| tig0004809 | CDS | 47544 | 47645 | 47544 | ID=Msa1341300-mRNA-1:cds;Parent=Msa1341300-mRNA-1 |
| tig0004809 | CDS | 47110 | 47302 | 47110 | ID=Msa1341300-mRNA-1:cds;Parent=Msa1341300-mRNA-1 |
| tig0004809 | CDS | 46504 | 46741 | 46504 | ID=Msa1341300-mRNA-1:cds;Parent=Msa1341300-mRNA-1 |
| tig0004809 | three_prime_UTR | 46239 | 46503 | 46239 | ID=Msa1341300-mRNA-1:three_prime_utr;Parent=Msa1341300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
