AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0776910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0776910 MtrunA17_Chr5g0432211 84.680 359 40 2 1 358 1 345 0.0 611
Msa0776910 MtrunA17_Chr5g0432301 82.730 359 60 2 1 357 1 359 0.0 608
Msa0776910 MtrunA17_Chr5g0432251 81.894 359 64 1 1 358 1 359 0.0 605
Msa0776910 MtrunA17_Chr5g0432241 80.556 360 68 2 1 358 1 360 0.0 591
Msa0776910 MtrunA17_Chr5g0432261 69.429 350 78 3 10 358 6 327 7.91e-178 496
Msa0776910 MtrunA17_Chr4g0040621 61.944 360 130 5 1 358 15 369 4.51e-158 447
Msa0776910 MtrunA17_Chr4g0046361 49.292 353 172 6 11 358 11 361 1.36e-115 339
Msa0776910 MtrunA17_Chr4g0014681 50.137 365 173 6 1 358 1 363 3.15e-115 338
Msa0776910 MtrunA17_Chr4g0014561 49.589 365 175 6 1 358 1 363 2.40e-113 334
Msa0776910 MtrunA17_Chr4g0046341 49.719 356 169 6 11 358 11 364 3.69e-108 321
Msa0776910 MtrunA17_Chr4g0014641 48.451 355 174 6 11 358 11 363 1.54e-107 319
Msa0776910 MtrunA17_Chr7g0219141 43.646 362 195 6 1 358 1 357 4.01e-106 315
Msa0776910 MtrunA17_Chr7g0223231 43.678 348 187 5 10 356 9 348 2.02e-102 305
Msa0776910 MtrunA17_Chr7g0223241 44.253 348 185 5 10 356 9 348 3.09e-102 305
Msa0776910 MtrunA17_Chr7g0219161 44.000 350 187 6 1 346 1 345 3.14e-101 303
Msa0776910 MtrunA17_Chr4g0014661 47.578 351 177 4 11 358 11 357 4.51e-100 300
Msa0776910 MtrunA17_Chr4g0046531 44.444 360 194 5 1 358 363 718 7.30e-99 308
Msa0776910 MtrunA17_Chr4g0046531 44.847 359 192 5 1 357 1 355 6.35e-98 305
Msa0776910 MtrunA17_Chr1g0188391 43.132 364 198 7 1 358 1 361 5.34e-98 295
Msa0776910 MtrunA17_Chr4g0014591 47.009 351 179 4 11 358 11 357 1.84e-96 290
Msa0776910 MtrunA17_Chr1g0188371 42.342 333 186 5 10 338 10 340 4.43e-85 262
Msa0776910 MtrunA17_Chr3g0121301 38.393 336 201 4 20 354 27 357 3.26e-74 234
Msa0776910 MtrunA17_Chr4g0014601 44.094 254 135 4 11 261 11 260 3.67e-71 223
Msa0776910 MtrunA17_Chr4g0021981 37.822 349 208 7 14 358 25 368 2.12e-70 224
Msa0776910 MtrunA17_Chr4g0022021 36.963 349 211 6 14 358 25 368 2.78e-65 211
Msa0776910 MtrunA17_Chr7g0276411 32.308 325 202 10 30 343 30 347 2.30e-45 159
Msa0776910 MtrunA17_Chr1g0200491 29.240 342 228 8 26 357 34 371 9.35e-45 157
Msa0776910 MtrunA17_Chr7g0276401 33.542 319 201 8 31 343 47 360 1.27e-44 157
Msa0776910 MtrunA17_Chr8g0367441 33.333 318 198 8 31 339 46 358 1.20e-43 154
Msa0776910 MtrunA17_Chr3g0128011 30.556 324 207 11 31 344 88 403 9.89e-42 150
Msa0776910 MtrunA17_Chr7g0219171 54.478 134 58 3 226 358 117 248 1.11e-41 146
Msa0776910 MtrunA17_Chr7g0219171 45.000 120 62 2 1 120 1 116 1.25e-21 92.4
Msa0776910 MtrunA17_Chr8g0367491 30.887 327 210 7 29 343 39 361 1.12e-41 149
Msa0776910 MtrunA17_Chr8g0367451 31.269 323 206 8 29 339 39 357 1.41e-41 149
Msa0776910 MtrunA17_Chr7g0218261 29.448 326 220 7 26 345 33 354 2.38e-41 148
Msa0776910 MtrunA17_Chr8g0367501 30.030 333 221 7 19 343 20 348 4.54e-41 149
Msa0776910 MtrunA17_Chr8g0345851 33.813 278 168 8 85 357 23 289 1.08e-40 144
Msa0776910 MtrunA17_Chr2g0307521 35.185 216 130 4 131 343 139 347 1.47e-40 146
Msa0776910 MtrunA17_Chr1g0163601 32.132 333 191 10 33 345 38 355 1.57e-40 146
Msa0776910 MtrunA17_Chr1g0163611 38.500 200 119 3 146 345 160 355 1.63e-39 144
Msa0776910 MtrunA17_Chr7g0218301 28.228 333 221 7 26 345 34 361 2.17e-39 143
Msa0776910 MtrunA17_Chr7g0218271 32.127 221 146 3 125 345 145 361 5.13e-39 142
Msa0776910 MtrunA17_Chr7g0218131 28.135 327 224 6 26 345 34 356 6.82e-39 142
Msa0776910 MtrunA17_Chr5g0448091 30.793 328 204 10 31 345 33 350 7.13e-39 142
Msa0776910 MtrunA17_Chr7g0218181 32.579 221 145 3 125 345 137 353 1.37e-38 141
Msa0776910 MtrunA17_Chr1g0163621 38.500 200 119 3 146 345 174 369 5.37e-38 140
Msa0776910 MtrunA17_Chr3g0085201 29.395 347 224 10 7 344 8 342 2.46e-37 137
Msa0776910 MtrunA17_Chr7g0218211 28.049 328 221 8 26 344 33 354 4.21e-37 137
Msa0776910 MtrunA17_Chr3g0085211 33.790 219 140 3 127 345 143 356 1.75e-36 135
Msa0776910 MtrunA17_Chr8g0367381 39.779 181 104 4 146 325 149 325 5.94e-35 130
Msa0776910 MtrunA17_Chr2g0314271 29.375 320 212 9 31 343 27 339 1.07e-30 119
Msa0776910 MtrunA17_Chr3g0130061 26.959 319 220 9 32 343 31 343 2.43e-27 110
Msa0776910 MtrunA17_Chr3g0130011 27.964 329 204 13 32 343 31 343 5.42e-27 109
Msa0776910 MtrunA17_Chr6g0482291 35.632 174 97 6 172 343 1 161 2.32e-22 92.8
Msa0776910 MtrunA17_Chr8g0367401 38.182 110 67 1 149 258 2 110 1.72e-20 86.7
Msa0776910 MtrunA17_Chr4g0014611 56.566 99 43 0 260 358 9 107 1.88e-19 82.8
Msa0776910 MtrunA17_Chr8g0367461 46.465 99 45 5 245 340 1 94 4.32e-19 82.0
Msa0776910 MtrunA17_Chr4g0014671 55.238 105 47 0 254 358 30 134 5.30e-17 76.6
Msa0776910 MtrunA17_Chr8g0367421 32.727 110 56 2 149 258 2 93 2.30e-14 69.3
Msa0776910 MtrunA17_Chr4g0011691 42.708 96 51 4 260 354 140 232 5.93e-14 70.9
Msa0776910 MtrunA17_Chr4g0011691 29.008 131 76 4 15 142 22 138 3.41e-12 65.5
Msa0776910 MtrunA17_Chr8g0367391 39.604 101 57 3 258 357 36 133 1.99e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0776910 AT4G35160.1 35.754 358 210 9 15 357 28 380 1.00e-61 202
Msa0776910 AT4G35150.1 34.262 359 185 10 8 357 7 323 2.24e-57 189
Msa0776910 AT5G54160.1 31.562 320 207 8 31 344 34 347 8.03e-45 158
Msa0776910 AT1G51990.2 31.193 327 211 6 43 358 39 362 9.97e-44 155
Msa0776910 AT1G51990.1 31.193 327 211 6 43 358 39 362 1.18e-43 155
Msa0776910 AT1G77520.1 30.636 346 212 9 31 357 44 380 7.11e-40 145
Msa0776910 AT5G53810.1 31.686 344 212 11 31 357 40 377 2.64e-37 138
Msa0776910 AT3G53140.1 30.675 326 205 11 31 343 27 344 2.63e-36 135
Msa0776910 AT1G63140.2 32.527 372 222 14 2 357 22 380 7.95e-36 134
Msa0776910 AT1G63140.4 32.527 372 222 14 2 357 42 400 1.11e-35 134
Msa0776910 AT1G33030.1 31.988 322 201 11 33 344 23 336 1.92e-35 132
Msa0776910 AT1G77530.1 29.942 344 217 9 31 357 44 380 1.05e-32 126
Msa0776910 AT1G21130.1 28.788 330 209 11 31 344 40 359 4.72e-31 121
Msa0776910 AT1G62900.1 39.423 208 120 4 152 357 1 204 1.56e-30 115
Msa0776910 AT5G37170.2 34.171 199 126 4 161 357 38 233 6.40e-30 115
Msa0776910 AT5G37170.1 34.171 199 126 4 161 357 138 333 2.63e-29 115
Msa0776910 AT1G21110.1 28.221 326 208 11 31 340 40 355 3.08e-29 116
Msa0776910 AT1G21120.1 28.182 330 211 11 31 344 40 359 4.85e-29 115
Msa0776910 AT1G21120.2 28.182 330 211 11 31 344 88 407 1.31e-28 115
Msa0776910 AT1G21100.1 26.970 330 215 9 31 344 40 359 5.41e-28 113
Msa0776910 AT5G37170.3 34.043 188 119 4 172 357 1 185 9.04e-27 105
Msa0776910 AT1G76790.1 25.305 328 215 9 31 339 30 346 3.20e-25 105
Msa0776910 AT1G33030.2 29.915 234 152 7 33 258 23 252 4.58e-17 80.5
Msa0776910 AT1G33030.3 29.915 234 152 7 33 258 23 252 8.43e-17 80.1
Msa0776910 AT1G63140.1 28.413 271 170 10 2 258 42 302 2.18e-16 79.3

Find 98 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTCAGTCACACAATATT+TGG 0.159363 5_2:+55638715 Msa0776910:three_prime_UTR
GTTAAATGAGTTGTTAAATT+TGG 0.170908 5_2:-55637689 None:intergenic
ATAATTAATTGAATGTATTT+TGG 0.181853 5_2:+55638802 Msa0776910:three_prime_UTR
CAACACATGGGATGTCGTTT+TGG 0.213169 5_2:+55637647 Msa0776910:CDS
ATAGACCTTGATCCTAAAAT+TGG 0.254900 5_2:-55638473 None:intergenic
TTTGTCTTAAGAGGATGATT+TGG 0.260141 5_2:+55638682 Msa0776910:three_prime_UTR
CCATGGTTGTGTATGATATC+TGG 0.301298 5_2:-55637328 None:intergenic
GATCTCCCACATGTTGTTGA+TGG 0.310559 5_2:+55637874 Msa0776910:CDS
ATTATATAACACTTGCTAAC+TGG 0.321090 5_2:-55637125 None:intergenic
TGCCATGGATCTATCATATC+TGG 0.330412 5_2:-55637577 None:intergenic
TACAGTCGATATTGCATGAT+TGG 0.335498 5_2:+55638207 Msa0776910:intron
TTGTCTTAAGAGGATGATTT+GGG 0.336204 5_2:+55638683 Msa0776910:three_prime_UTR
AAGTAGCTAGCTAGCAAGTA+TGG 0.339857 5_2:+55637186 Msa0776910:exon
AGACAAGGAAAATACTTATA+TGG 0.355177 5_2:-55638867 None:intergenic
TTTGGACATATGCACTTAAT+CGG 0.359680 5_2:+55638733 Msa0776910:three_prime_UTR
TCAAAGCTCAAAGCCACTTA+TGG 0.367540 5_2:+55637245 Msa0776910:CDS
TCGATCAACAAGATTTGAAC+TGG 0.372789 5_2:-55637159 None:intergenic
CAACCAATGACTCAACTTCA+TGG 0.372843 5_2:-55637777 None:intergenic
TCGATTAGTTTCCGATTTGT+TGG 0.382710 5_2:+55637732 Msa0776910:CDS
TGCCAAATCATTCCCACAAA+TGG 0.391775 5_2:+55637837 Msa0776910:CDS
TGAAAATGTGATTCCATAAG+TGG 0.393208 5_2:-55637258 None:intergenic
TTCCATTTGTGGGAATGATT+TGG 0.394430 5_2:-55637839 None:intergenic
GCTTTGAGCTTTGAGCAAAT+TGG 0.396268 5_2:-55637236 None:intergenic
ACAATGCAGAGGGATGGTTT+TGG 0.409425 5_2:-55638651 None:intergenic
GTTGATGTTGGAGGAGGTAC+GGG 0.411565 5_2:+55637796 Msa0776910:CDS
AAGAGAGAAACGAGAAAGAA+TGG 0.424421 5_2:+55638405 Msa0776910:CDS
AACAAAATTGCATCTGTTGG+CGG 0.431252 5_2:-55637952 None:intergenic
AACACAATGCATTCCATTTG+TGG 0.431379 5_2:-55637850 None:intergenic
ATGGATTAAGTTGATTTCCT+TGG 0.431482 5_2:+55638424 Msa0776910:CDS
GTTCCATGAAGTTGAGTCAT+TGG 0.432542 5_2:+55637774 Msa0776910:CDS
CAACTCATTTAACGAATCAA+TGG 0.437712 5_2:+55637699 Msa0776910:CDS
AGCAACATTATCTCCATGTT+GGG 0.440877 5_2:-55637212 None:intergenic
CTTAAATGTGTAGTTGACTT+AGG 0.449531 5_2:+55637301 Msa0776910:CDS
GCAATATCAAAGAAAGGTAA+AGG 0.460727 5_2:+55638272 Msa0776910:CDS
CTTATATGGTCACAATAGCT+TGG 0.463243 5_2:-55638853 None:intergenic
GCACTTCTCAACCAACAAAT+CGG 0.467046 5_2:-55637743 None:intergenic
TTCTTCCTCATCCATGGTAG+AGG 0.467272 5_2:+55638604 Msa0776910:three_prime_UTR
CATGGCATCAATTCTCTGCT+TGG 0.468036 5_2:+55637593 Msa0776910:CDS
GTTGAGTCATTGGTTGATGT+TGG 0.468409 5_2:+55637784 Msa0776910:CDS
ATTAAGTTGATTTCCTTGGC+TGG 0.468848 5_2:+55638428 Msa0776910:CDS
TATTCCTTCTTCCTCATCCA+TGG 0.473581 5_2:+55638598 Msa0776910:three_prime_UTR
GGTTGATGTTGGAGGAGGTA+CGG 0.474379 5_2:+55637795 Msa0776910:CDS
CCAAATATTGTGTGACTGAA+TGG 0.482917 5_2:-55638715 None:intergenic
GCACTTAATCGGAAAATAAG+TGG 0.490088 5_2:+55638744 Msa0776910:three_prime_UTR
TTCAACAAAATTGCATCTGT+TGG 0.490404 5_2:-55637955 None:intergenic
ACACAATGCATTCCATTTGT+GGG 0.501519 5_2:-55637849 None:intergenic
AAAGATATTAAAGAATTGTA+AGG 0.505831 5_2:+55638247 Msa0776910:CDS
TTATATGGTCACAATAGCTT+GGG 0.511873 5_2:-55638852 None:intergenic
GGAATAGAGATGTAGAGAAA+CGG 0.514416 5_2:-55638581 None:intergenic
AACATTGTGATGATGACAAA+TGG 0.517874 5_2:-55638536 None:intergenic
AAGCAACATTATCTCCATGT+TGG 0.524077 5_2:-55637213 None:intergenic
ACATGTGGTGCCACACTCAT+TGG 0.525895 5_2:-55637538 None:intergenic
AGTGAAAACTTAAACTATGT+TGG 0.531848 5_2:+55637907 Msa0776910:CDS
CAATATCAAAGAAAGGTAAA+GGG 0.532814 5_2:+55638273 Msa0776910:CDS
TCTACCATGGATGAGGAAGA+AGG 0.534760 5_2:-55638602 None:intergenic
TTGATGATGGTAGTATTCGC+AGG 0.543043 5_2:+55638380 Msa0776910:CDS
CGATCAACAAGATTTGAACT+GGG 0.544734 5_2:-55637158 None:intergenic
TCATCCTCTTAAGACAAAAG+AGG 0.545554 5_2:-55638677 None:intergenic
AAGGATGCAATATCAAAGAA+AGG 0.545671 5_2:+55638266 Msa0776910:CDS
GAAAACTTAAACTATGTTGG+TGG 0.548643 5_2:+55637910 Msa0776910:CDS
CTTCTATGACATGTTGATGA+TGG 0.553245 5_2:+55638367 Msa0776910:CDS
CATGTTGTTGATGGTTTGCA+AGG 0.557883 5_2:+55637883 Msa0776910:CDS
CGCATCAAGCGATAGATGCA+AGG 0.562811 5_2:-55637409 None:intergenic
ACGGTGTTAGACAAAGAGAA+TGG 0.563271 5_2:+55638314 Msa0776910:CDS
CCATGGTAGAGGAGTGATTG+TGG 0.569196 5_2:+55638615 Msa0776910:three_prime_UTR
GAGTCATTGGTTGATGTTGG+AGG 0.570761 5_2:+55637787 Msa0776910:CDS
TGCAAACCATCAACAACATG+TGG 0.573332 5_2:-55637880 None:intergenic
ATGCGAATCATGACTCACTC+TGG 0.576549 5_2:+55637427 Msa0776910:CDS
AAAGAAAGGTAAAGGGAAGG+TGG 0.580286 5_2:+55638280 Msa0776910:CDS
TGGAGGAGGTACGGGGACCA+TGG 0.588947 5_2:+55637804 Msa0776910:CDS
CAAGCAGAGAATTGATGCCA+TGG 0.591666 5_2:-55637592 None:intergenic
CTGAGTATCCCGTGCACATG+TGG 0.594919 5_2:-55637553 None:intergenic
GTAGTCACTAAAACCAGCCA+AGG 0.595683 5_2:-55638441 None:intergenic
TTGTTGGTTGAGAAGTGCAA+GGG 0.598365 5_2:+55637748 Msa0776910:CDS
TTTGTTGGTTGAGAAGTGCA+AGG 0.604264 5_2:+55637747 Msa0776910:CDS
TCACTCCTCTACCATGGATG+AGG 0.605925 5_2:-55638609 None:intergenic
GTCCAGATATGATAGATCCA+TGG 0.611089 5_2:+55637575 Msa0776910:CDS
ATCAAAGAAAGGTAAAGGGA+AGG 0.618639 5_2:+55638277 Msa0776910:CDS
TCATTGGTTGATGTTGGAGG+AGG 0.622074 5_2:+55637790 Msa0776910:CDS
TCTTAAGAGGATGATTTGGG+TGG 0.624562 5_2:+55638686 Msa0776910:three_prime_UTR
AGGAAGACAATGCAGAGGGA+TGG 0.628535 5_2:-55638657 None:intergenic
CCACAATCACTCCTCTACCA+TGG 0.628604 5_2:-55638615 None:intergenic
ATCAACAAGATTTGAACTGG+GGG 0.636051 5_2:-55637156 None:intergenic
TTGATGTTGGAGGAGGTACG+GGG 0.638274 5_2:+55637797 Msa0776910:CDS
GCAAGTATGGAATCCCAACA+TGG 0.639120 5_2:+55637199 Msa0776910:exon
GAAAATCACTTATTTAGACA+AGG 0.642671 5_2:-55638882 None:intergenic
GTGTGGCACCACATGTGCAC+GGG 0.643351 5_2:+55637545 Msa0776910:CDS
AAAAGAGGAAGACAATGCAG+AGG 0.643495 5_2:-55638662 None:intergenic
CCAGATATCATACACAACCA+TGG 0.643900 5_2:+55637328 Msa0776910:CDS
ACAGCATTTGAAACAACACA+TGG 0.644519 5_2:+55637634 Msa0776910:CDS
AGTGTGGCACCACATGTGCA+CGG 0.654606 5_2:+55637544 Msa0776910:CDS
GATCAACAAGATTTGAACTG+GGG 0.663002 5_2:-55637157 None:intergenic
AAAGAGGAAGACAATGCAGA+GGG 0.666805 5_2:-55638661 None:intergenic
TAAGAACAGTCCAATGAGTG+TGG 0.672166 5_2:+55637528 Msa0776910:CDS
GCAAACCATCAACAACATGT+GGG 0.690290 5_2:-55637879 None:intergenic
GAAGGTGGTTATCATTGACA+CGG 0.700974 5_2:+55638295 Msa0776910:CDS
ATTGCATGATTGGAATGACG+AGG 0.708926 5_2:+55638217 Msa0776910:CDS
CAGCATTTGAAACAACACAT+GGG 0.716263 5_2:+55637635 Msa0776910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTGATTTTTTTTTCT+TGG + chr5_2:55638029-55638048 Msa0776910:intron 10.0%
!!! ATAATTAATTGAATGTATTT+TGG + chr5_2:55638802-55638821 Msa0776910:three_prime_UTR 10.0%
!!! TTAATTTGATTTTTTTTTCT+TGG + chr5_2:55638029-55638048 Msa0776910:intron 10.0%
!!! ATAATTAATTGAATGTATTT+TGG + chr5_2:55638802-55638821 Msa0776910:three_prime_UTR 10.0%
!!! TATATTAGTTTACACATTAT+AGG + chr5_2:55638005-55638024 Msa0776910:intron 15.0%
!!! ATATTAGTTTACACATTATA+GGG + chr5_2:55638006-55638025 Msa0776910:intron 15.0%
!! AAGGAAAAATATTATCTAAT+TGG - chr5_2:55638109-55638128 None:intergenic 15.0%
!! AAAGATATTAAAGAATTGTA+AGG + chr5_2:55638247-55638266 Msa0776910:CDS 15.0%
!!! TATATTAGTTTACACATTAT+AGG + chr5_2:55638005-55638024 Msa0776910:intron 15.0%
!!! ATATTAGTTTACACATTATA+GGG + chr5_2:55638006-55638025 Msa0776910:intron 15.0%
!! AAGGAAAAATATTATCTAAT+TGG - chr5_2:55638109-55638128 None:intergenic 15.0%
!! AAAGATATTAAAGAATTGTA+AGG + chr5_2:55638247-55638266 Msa0776910:CDS 15.0%
!! GTTAAATGAGTTGTTAAATT+TGG - chr5_2:55637692-55637711 None:intergenic 20.0%
!!! ATTTTATAGATTATGGATCA+TGG - chr5_2:55638512-55638531 None:intergenic 20.0%
!! GTTAAATGAGTTGTTAAATT+TGG - chr5_2:55637692-55637711 None:intergenic 20.0%
!!! ATTTTATAGATTATGGATCA+TGG - chr5_2:55638512-55638531 None:intergenic 20.0%
!! ATTATATAACACTTGCTAAC+TGG - chr5_2:55637128-55637147 None:intergenic 25.0%
! AGTGAAAACTTAAACTATGT+TGG + chr5_2:55637907-55637926 Msa0776910:CDS 25.0%
!!! TTTTTTTCTTGGTACAAAAG+AGG + chr5_2:55638040-55638059 Msa0776910:intron 25.0%
!!! TTTTTTCTTGGTACAAAAGA+GGG + chr5_2:55638041-55638060 Msa0776910:intron 25.0%
!! CCATATTTTTCTACTAATGA+CGG + chr5_2:55638083-55638102 Msa0776910:intron 25.0%
! AGTGGAAAAAATAGAAAACA+AGG - chr5_2:55638128-55638147 None:intergenic 25.0%
! CAATATCAAAGAAAGGTAAA+GGG + chr5_2:55638273-55638292 Msa0776910:CDS 25.0%
!! TACAAGATTACTCCAATTTT+AGG + chr5_2:55638461-55638480 Msa0776910:CDS 25.0%
!! TGGCTAGATTTTATAGATTA+TGG - chr5_2:55638519-55638538 None:intergenic 25.0%
! AGACAAGGAAAATACTTATA+TGG - chr5_2:55638870-55638889 None:intergenic 25.0%
! GAAAATCACTTATTTAGACA+AGG - chr5_2:55638885-55638904 None:intergenic 25.0%
!! ATTATATAACACTTGCTAAC+TGG - chr5_2:55637128-55637147 None:intergenic 25.0%
! AGTGAAAACTTAAACTATGT+TGG + chr5_2:55637907-55637926 Msa0776910:CDS 25.0%
!!! TTTTTTTCTTGGTACAAAAG+AGG + chr5_2:55638040-55638059 Msa0776910:intron 25.0%
!!! TTTTTTCTTGGTACAAAAGA+GGG + chr5_2:55638041-55638060 Msa0776910:intron 25.0%
!! CCATATTTTTCTACTAATGA+CGG + chr5_2:55638083-55638102 Msa0776910:intron 25.0%
! AGTGGAAAAAATAGAAAACA+AGG - chr5_2:55638128-55638147 None:intergenic 25.0%
! CAATATCAAAGAAAGGTAAA+GGG + chr5_2:55638273-55638292 Msa0776910:CDS 25.0%
!! TACAAGATTACTCCAATTTT+AGG + chr5_2:55638461-55638480 Msa0776910:CDS 25.0%
!! TGGCTAGATTTTATAGATTA+TGG - chr5_2:55638519-55638538 None:intergenic 25.0%
! AGACAAGGAAAATACTTATA+TGG - chr5_2:55638870-55638889 None:intergenic 25.0%
! GAAAATCACTTATTTAGACA+AGG - chr5_2:55638885-55638904 None:intergenic 25.0%
TGAAAATGTGATTCCATAAG+TGG - chr5_2:55637261-55637280 None:intergenic 30.0%
! CTTAAATGTGTAGTTGACTT+AGG + chr5_2:55637301-55637320 Msa0776910:CDS 30.0%
CAACTCATTTAACGAATCAA+TGG + chr5_2:55637699-55637718 Msa0776910:CDS 30.0%
GAAAACTTAAACTATGTTGG+TGG + chr5_2:55637910-55637929 Msa0776910:CDS 30.0%
TTCAACAAAATTGCATCTGT+TGG - chr5_2:55637958-55637977 None:intergenic 30.0%
! AACAGATGCAATTTTGTTGA+AGG + chr5_2:55637957-55637976 Msa0776910:CDS 30.0%
! TTTTTCTTGGTACAAAAGAG+GGG + chr5_2:55638042-55638061 Msa0776910:intron 30.0%
CCGTCATTAGTAGAAAAATA+TGG - chr5_2:55638086-55638105 None:intergenic 30.0%
GAAAAGAGAACAAACTAAAG+TGG - chr5_2:55638146-55638165 None:intergenic 30.0%
! TATGTTTGAGTTACGAAAGA+AGG - chr5_2:55638174-55638193 None:intergenic 30.0%
AAGGATGCAATATCAAAGAA+AGG + chr5_2:55638266-55638285 Msa0776910:CDS 30.0%
GCAATATCAAAGAAAGGTAA+AGG + chr5_2:55638272-55638291 Msa0776910:CDS 30.0%
!! ATGGATTAAGTTGATTTCCT+TGG + chr5_2:55638424-55638443 Msa0776910:CDS 30.0%
!!! TTACTCCAATTTTAGGATCA+AGG + chr5_2:55638468-55638487 Msa0776910:CDS 30.0%
ATAGACCTTGATCCTAAAAT+TGG - chr5_2:55638476-55638495 None:intergenic 30.0%
! AACATTGTGATGATGACAAA+TGG - chr5_2:55638539-55638558 None:intergenic 30.0%
TTTGTCTTAAGAGGATGATT+TGG + chr5_2:55638682-55638701 Msa0776910:three_prime_UTR 30.0%
TTGTCTTAAGAGGATGATTT+GGG + chr5_2:55638683-55638702 Msa0776910:three_prime_UTR 30.0%
TTTGGACATATGCACTTAAT+CGG + chr5_2:55638733-55638752 Msa0776910:three_prime_UTR 30.0%
TTATATGGTCACAATAGCTT+GGG - chr5_2:55638855-55638874 None:intergenic 30.0%
TGAAAATGTGATTCCATAAG+TGG - chr5_2:55637261-55637280 None:intergenic 30.0%
! CTTAAATGTGTAGTTGACTT+AGG + chr5_2:55637301-55637320 Msa0776910:CDS 30.0%
CAACTCATTTAACGAATCAA+TGG + chr5_2:55637699-55637718 Msa0776910:CDS 30.0%
GAAAACTTAAACTATGTTGG+TGG + chr5_2:55637910-55637929 Msa0776910:CDS 30.0%
TTCAACAAAATTGCATCTGT+TGG - chr5_2:55637958-55637977 None:intergenic 30.0%
! AACAGATGCAATTTTGTTGA+AGG + chr5_2:55637957-55637976 Msa0776910:CDS 30.0%
! TTTTTCTTGGTACAAAAGAG+GGG + chr5_2:55638042-55638061 Msa0776910:intron 30.0%
CCGTCATTAGTAGAAAAATA+TGG - chr5_2:55638086-55638105 None:intergenic 30.0%
GAAAAGAGAACAAACTAAAG+TGG - chr5_2:55638146-55638165 None:intergenic 30.0%
! TATGTTTGAGTTACGAAAGA+AGG - chr5_2:55638174-55638193 None:intergenic 30.0%
AAGGATGCAATATCAAAGAA+AGG + chr5_2:55638266-55638285 Msa0776910:CDS 30.0%
GCAATATCAAAGAAAGGTAA+AGG + chr5_2:55638272-55638291 Msa0776910:CDS 30.0%
!! ATGGATTAAGTTGATTTCCT+TGG + chr5_2:55638424-55638443 Msa0776910:CDS 30.0%
!!! TTACTCCAATTTTAGGATCA+AGG + chr5_2:55638468-55638487 Msa0776910:CDS 30.0%
ATAGACCTTGATCCTAAAAT+TGG - chr5_2:55638476-55638495 None:intergenic 30.0%
! AACATTGTGATGATGACAAA+TGG - chr5_2:55638539-55638558 None:intergenic 30.0%
TTTGTCTTAAGAGGATGATT+TGG + chr5_2:55638682-55638701 Msa0776910:three_prime_UTR 30.0%
TTGTCTTAAGAGGATGATTT+GGG + chr5_2:55638683-55638702 Msa0776910:three_prime_UTR 30.0%
TTTGGACATATGCACTTAAT+CGG + chr5_2:55638733-55638752 Msa0776910:three_prime_UTR 30.0%
TTATATGGTCACAATAGCTT+GGG - chr5_2:55638855-55638874 None:intergenic 30.0%
ATCAACAAGATTTGAACTGG+GGG - chr5_2:55637159-55637178 None:intergenic 35.0%
GATCAACAAGATTTGAACTG+GGG - chr5_2:55637160-55637179 None:intergenic 35.0%
CGATCAACAAGATTTGAACT+GGG - chr5_2:55637161-55637180 None:intergenic 35.0%
TCGATCAACAAGATTTGAAC+TGG - chr5_2:55637162-55637181 None:intergenic 35.0%
AGCAACATTATCTCCATGTT+GGG - chr5_2:55637215-55637234 None:intergenic 35.0%
AAGCAACATTATCTCCATGT+TGG - chr5_2:55637216-55637235 None:intergenic 35.0%
!!! GAAGAAATGAGTTTTGAGAG+TGG - chr5_2:55637364-55637383 None:intergenic 35.0%
!!! AGATGCAAGGCTTTTTTGAA+GGG - chr5_2:55637399-55637418 None:intergenic 35.0%
!!! TAGATGCAAGGCTTTTTTGA+AGG - chr5_2:55637400-55637419 None:intergenic 35.0%
! ACAGCATTTGAAACAACACA+TGG + chr5_2:55637634-55637653 Msa0776910:CDS 35.0%
! CAGCATTTGAAACAACACAT+GGG + chr5_2:55637635-55637654 Msa0776910:CDS 35.0%
!! TCGATTAGTTTCCGATTTGT+TGG + chr5_2:55637732-55637751 Msa0776910:CDS 35.0%
TTCCATTTGTGGGAATGATT+TGG - chr5_2:55637842-55637861 None:intergenic 35.0%
ACACAATGCATTCCATTTGT+GGG - chr5_2:55637852-55637871 None:intergenic 35.0%
AACACAATGCATTCCATTTG+TGG - chr5_2:55637853-55637872 None:intergenic 35.0%
AACAAAATTGCATCTGTTGG+CGG - chr5_2:55637955-55637974 None:intergenic 35.0%
TACAGTCGATATTGCATGAT+TGG + chr5_2:55638207-55638226 Msa0776910:intron 35.0%
ATCAAAGAAAGGTAAAGGGA+AGG + chr5_2:55638277-55638296 Msa0776910:CDS 35.0%
! CTTCTATGACATGTTGATGA+TGG + chr5_2:55638367-55638386 Msa0776910:CDS 35.0%
AAGAGAGAAACGAGAAAGAA+TGG + chr5_2:55638405-55638424 Msa0776910:CDS 35.0%
!! ATTAAGTTGATTTCCTTGGC+TGG + chr5_2:55638428-55638447 Msa0776910:CDS 35.0%
GGAATAGAGATGTAGAGAAA+CGG - chr5_2:55638584-55638603 None:intergenic 35.0%
! TCTTCCTCTTTTGTCTTAAG+AGG + chr5_2:55638673-55638692 Msa0776910:three_prime_UTR 35.0%
TCATCCTCTTAAGACAAAAG+AGG - chr5_2:55638680-55638699 None:intergenic 35.0%
CCAAATATTGTGTGACTGAA+TGG - chr5_2:55638718-55638737 None:intergenic 35.0%
CCATTCAGTCACACAATATT+TGG + chr5_2:55638715-55638734 Msa0776910:three_prime_UTR 35.0%
GCACTTAATCGGAAAATAAG+TGG + chr5_2:55638744-55638763 Msa0776910:three_prime_UTR 35.0%
CTTATATGGTCACAATAGCT+TGG - chr5_2:55638856-55638875 None:intergenic 35.0%
ATCAACAAGATTTGAACTGG+GGG - chr5_2:55637159-55637178 None:intergenic 35.0%
GATCAACAAGATTTGAACTG+GGG - chr5_2:55637160-55637179 None:intergenic 35.0%
CGATCAACAAGATTTGAACT+GGG - chr5_2:55637161-55637180 None:intergenic 35.0%
TCGATCAACAAGATTTGAAC+TGG - chr5_2:55637162-55637181 None:intergenic 35.0%
AGCAACATTATCTCCATGTT+GGG - chr5_2:55637215-55637234 None:intergenic 35.0%
AAGCAACATTATCTCCATGT+TGG - chr5_2:55637216-55637235 None:intergenic 35.0%
!!! GAAGAAATGAGTTTTGAGAG+TGG - chr5_2:55637364-55637383 None:intergenic 35.0%
!!! AGATGCAAGGCTTTTTTGAA+GGG - chr5_2:55637399-55637418 None:intergenic 35.0%
!!! TAGATGCAAGGCTTTTTTGA+AGG - chr5_2:55637400-55637419 None:intergenic 35.0%
! ACAGCATTTGAAACAACACA+TGG + chr5_2:55637634-55637653 Msa0776910:CDS 35.0%
! CAGCATTTGAAACAACACAT+GGG + chr5_2:55637635-55637654 Msa0776910:CDS 35.0%
!! TCGATTAGTTTCCGATTTGT+TGG + chr5_2:55637732-55637751 Msa0776910:CDS 35.0%
TTCCATTTGTGGGAATGATT+TGG - chr5_2:55637842-55637861 None:intergenic 35.0%
ACACAATGCATTCCATTTGT+GGG - chr5_2:55637852-55637871 None:intergenic 35.0%
AACACAATGCATTCCATTTG+TGG - chr5_2:55637853-55637872 None:intergenic 35.0%
AACAAAATTGCATCTGTTGG+CGG - chr5_2:55637955-55637974 None:intergenic 35.0%
TACAGTCGATATTGCATGAT+TGG + chr5_2:55638207-55638226 Msa0776910:intron 35.0%
ATCAAAGAAAGGTAAAGGGA+AGG + chr5_2:55638277-55638296 Msa0776910:CDS 35.0%
! CTTCTATGACATGTTGATGA+TGG + chr5_2:55638367-55638386 Msa0776910:CDS 35.0%
AAGAGAGAAACGAGAAAGAA+TGG + chr5_2:55638405-55638424 Msa0776910:CDS 35.0%
!! ATTAAGTTGATTTCCTTGGC+TGG + chr5_2:55638428-55638447 Msa0776910:CDS 35.0%
GGAATAGAGATGTAGAGAAA+CGG - chr5_2:55638584-55638603 None:intergenic 35.0%
! TCTTCCTCTTTTGTCTTAAG+AGG + chr5_2:55638673-55638692 Msa0776910:three_prime_UTR 35.0%
TCATCCTCTTAAGACAAAAG+AGG - chr5_2:55638680-55638699 None:intergenic 35.0%
CCAAATATTGTGTGACTGAA+TGG - chr5_2:55638718-55638737 None:intergenic 35.0%
CCATTCAGTCACACAATATT+TGG + chr5_2:55638715-55638734 Msa0776910:three_prime_UTR 35.0%
GCACTTAATCGGAAAATAAG+TGG + chr5_2:55638744-55638763 Msa0776910:three_prime_UTR 35.0%
CTTATATGGTCACAATAGCT+TGG - chr5_2:55638856-55638875 None:intergenic 35.0%
AAGTAGCTAGCTAGCAAGTA+TGG + chr5_2:55637186-55637205 Msa0776910:exon 40.0%
!! GCTTTGAGCTTTGAGCAAAT+TGG - chr5_2:55637239-55637258 None:intergenic 40.0%
TCAAAGCTCAAAGCCACTTA+TGG + chr5_2:55637245-55637264 Msa0776910:CDS 40.0%
CCATGGTTGTGTATGATATC+TGG - chr5_2:55637331-55637350 None:intergenic 40.0%
CCAGATATCATACACAACCA+TGG + chr5_2:55637328-55637347 Msa0776910:CDS 40.0%
!!! AATGAGTTTTGAGAGTGGCA+TGG - chr5_2:55637359-55637378 None:intergenic 40.0%
TAAGAACAGTCCAATGAGTG+TGG + chr5_2:55637528-55637547 Msa0776910:CDS 40.0%
GTCCAGATATGATAGATCCA+TGG + chr5_2:55637575-55637594 Msa0776910:CDS 40.0%
TGCCATGGATCTATCATATC+TGG - chr5_2:55637580-55637599 None:intergenic 40.0%
!!! AACACATGGGATGTCGTTTT+GGG + chr5_2:55637648-55637667 Msa0776910:CDS 40.0%
GCACTTCTCAACCAACAAAT+CGG - chr5_2:55637746-55637765 None:intergenic 40.0%
! TTTGTTGGTTGAGAAGTGCA+AGG + chr5_2:55637747-55637766 Msa0776910:CDS 40.0%
! TTGTTGGTTGAGAAGTGCAA+GGG + chr5_2:55637748-55637767 Msa0776910:CDS 40.0%
GTTCCATGAAGTTGAGTCAT+TGG + chr5_2:55637774-55637793 Msa0776910:CDS 40.0%
CAACCAATGACTCAACTTCA+TGG - chr5_2:55637780-55637799 None:intergenic 40.0%
! GTTGAGTCATTGGTTGATGT+TGG + chr5_2:55637784-55637803 Msa0776910:CDS 40.0%
! TTTGGCAAGAGTTTTTGCCA+TGG - chr5_2:55637824-55637843 None:intergenic 40.0%
TGCCAAATCATTCCCACAAA+TGG + chr5_2:55637837-55637856 Msa0776910:CDS 40.0%
GCAAACCATCAACAACATGT+GGG - chr5_2:55637882-55637901 None:intergenic 40.0%
TGCAAACCATCAACAACATG+TGG - chr5_2:55637883-55637902 None:intergenic 40.0%
!! CATGTTGTTGATGGTTTGCA+AGG + chr5_2:55637883-55637902 Msa0776910:CDS 40.0%
ATTGCATGATTGGAATGACG+AGG + chr5_2:55638217-55638236 Msa0776910:CDS 40.0%
AAAGAAAGGTAAAGGGAAGG+TGG + chr5_2:55638280-55638299 Msa0776910:CDS 40.0%
GAAGGTGGTTATCATTGACA+CGG + chr5_2:55638295-55638314 Msa0776910:CDS 40.0%
! ACGGTGTTAGACAAAGAGAA+TGG + chr5_2:55638314-55638333 Msa0776910:CDS 40.0%
!! TTGATGATGGTAGTATTCGC+AGG + chr5_2:55638380-55638399 Msa0776910:CDS 40.0%
TATTCCTTCTTCCTCATCCA+TGG + chr5_2:55638598-55638617 Msa0776910:three_prime_UTR 40.0%
AAAGAGGAAGACAATGCAGA+GGG - chr5_2:55638664-55638683 None:intergenic 40.0%
AAAAGAGGAAGACAATGCAG+AGG - chr5_2:55638665-55638684 None:intergenic 40.0%
! TCTTAAGAGGATGATTTGGG+TGG + chr5_2:55638686-55638705 Msa0776910:three_prime_UTR 40.0%
AAGTAGCTAGCTAGCAAGTA+TGG + chr5_2:55637186-55637205 Msa0776910:exon 40.0%
!! GCTTTGAGCTTTGAGCAAAT+TGG - chr5_2:55637239-55637258 None:intergenic 40.0%
TCAAAGCTCAAAGCCACTTA+TGG + chr5_2:55637245-55637264 Msa0776910:CDS 40.0%
CCATGGTTGTGTATGATATC+TGG - chr5_2:55637331-55637350 None:intergenic 40.0%
CCAGATATCATACACAACCA+TGG + chr5_2:55637328-55637347 Msa0776910:CDS 40.0%
!!! AATGAGTTTTGAGAGTGGCA+TGG - chr5_2:55637359-55637378 None:intergenic 40.0%
TAAGAACAGTCCAATGAGTG+TGG + chr5_2:55637528-55637547 Msa0776910:CDS 40.0%
GTCCAGATATGATAGATCCA+TGG + chr5_2:55637575-55637594 Msa0776910:CDS 40.0%
TGCCATGGATCTATCATATC+TGG - chr5_2:55637580-55637599 None:intergenic 40.0%
!!! AACACATGGGATGTCGTTTT+GGG + chr5_2:55637648-55637667 Msa0776910:CDS 40.0%
GCACTTCTCAACCAACAAAT+CGG - chr5_2:55637746-55637765 None:intergenic 40.0%
! TTTGTTGGTTGAGAAGTGCA+AGG + chr5_2:55637747-55637766 Msa0776910:CDS 40.0%
! TTGTTGGTTGAGAAGTGCAA+GGG + chr5_2:55637748-55637767 Msa0776910:CDS 40.0%
GTTCCATGAAGTTGAGTCAT+TGG + chr5_2:55637774-55637793 Msa0776910:CDS 40.0%
CAACCAATGACTCAACTTCA+TGG - chr5_2:55637780-55637799 None:intergenic 40.0%
! GTTGAGTCATTGGTTGATGT+TGG + chr5_2:55637784-55637803 Msa0776910:CDS 40.0%
! TTTGGCAAGAGTTTTTGCCA+TGG - chr5_2:55637824-55637843 None:intergenic 40.0%
TGCCAAATCATTCCCACAAA+TGG + chr5_2:55637837-55637856 Msa0776910:CDS 40.0%
GCAAACCATCAACAACATGT+GGG - chr5_2:55637882-55637901 None:intergenic 40.0%
TGCAAACCATCAACAACATG+TGG - chr5_2:55637883-55637902 None:intergenic 40.0%
!! CATGTTGTTGATGGTTTGCA+AGG + chr5_2:55637883-55637902 Msa0776910:CDS 40.0%
ATTGCATGATTGGAATGACG+AGG + chr5_2:55638217-55638236 Msa0776910:CDS 40.0%
AAAGAAAGGTAAAGGGAAGG+TGG + chr5_2:55638280-55638299 Msa0776910:CDS 40.0%
GAAGGTGGTTATCATTGACA+CGG + chr5_2:55638295-55638314 Msa0776910:CDS 40.0%
! ACGGTGTTAGACAAAGAGAA+TGG + chr5_2:55638314-55638333 Msa0776910:CDS 40.0%
!! TTGATGATGGTAGTATTCGC+AGG + chr5_2:55638380-55638399 Msa0776910:CDS 40.0%
TATTCCTTCTTCCTCATCCA+TGG + chr5_2:55638598-55638617 Msa0776910:three_prime_UTR 40.0%
AAAGAGGAAGACAATGCAGA+GGG - chr5_2:55638664-55638683 None:intergenic 40.0%
AAAAGAGGAAGACAATGCAG+AGG - chr5_2:55638665-55638684 None:intergenic 40.0%
! TCTTAAGAGGATGATTTGGG+TGG + chr5_2:55638686-55638705 Msa0776910:three_prime_UTR 40.0%
GCAAGTATGGAATCCCAACA+TGG + chr5_2:55637199-55637218 Msa0776910:exon 45.0%
! AGAGTGGCATGGATTTTCCA+TGG - chr5_2:55637348-55637367 None:intergenic 45.0%
!!! GGCTTTTTTGAAGGGTGGAT+TGG - chr5_2:55637391-55637410 None:intergenic 45.0%
!!! TGCAAGGCTTTTTTGAAGGG+TGG - chr5_2:55637396-55637415 None:intergenic 45.0%
ATGCGAATCATGACTCACTC+TGG + chr5_2:55637427-55637446 Msa0776910:CDS 45.0%
CAAGCAGAGAATTGATGCCA+TGG - chr5_2:55637595-55637614 None:intergenic 45.0%
CATGGCATCAATTCTCTGCT+TGG + chr5_2:55637593-55637612 Msa0776910:CDS 45.0%
!! CAACACATGGGATGTCGTTT+TGG + chr5_2:55637647-55637666 Msa0776910:CDS 45.0%
! GAGTCATTGGTTGATGTTGG+AGG + chr5_2:55637787-55637806 Msa0776910:CDS 45.0%
! TCATTGGTTGATGTTGGAGG+AGG + chr5_2:55637790-55637809 Msa0776910:CDS 45.0%
GATCTCCCACATGTTGTTGA+TGG + chr5_2:55637874-55637893 Msa0776910:CDS 45.0%
GTAGTCACTAAAACCAGCCA+AGG - chr5_2:55638444-55638463 None:intergenic 45.0%
TCTACCATGGATGAGGAAGA+AGG - chr5_2:55638605-55638624 None:intergenic 45.0%
TTCTTCCTCATCCATGGTAG+AGG + chr5_2:55638604-55638623 Msa0776910:three_prime_UTR 45.0%
! ACAATGCAGAGGGATGGTTT+TGG - chr5_2:55638654-55638673 None:intergenic 45.0%
GCAAGTATGGAATCCCAACA+TGG + chr5_2:55637199-55637218 Msa0776910:exon 45.0%
! AGAGTGGCATGGATTTTCCA+TGG - chr5_2:55637348-55637367 None:intergenic 45.0%
!!! GGCTTTTTTGAAGGGTGGAT+TGG - chr5_2:55637391-55637410 None:intergenic 45.0%
!!! TGCAAGGCTTTTTTGAAGGG+TGG - chr5_2:55637396-55637415 None:intergenic 45.0%
ATGCGAATCATGACTCACTC+TGG + chr5_2:55637427-55637446 Msa0776910:CDS 45.0%
CAAGCAGAGAATTGATGCCA+TGG - chr5_2:55637595-55637614 None:intergenic 45.0%
CATGGCATCAATTCTCTGCT+TGG + chr5_2:55637593-55637612 Msa0776910:CDS 45.0%
!! CAACACATGGGATGTCGTTT+TGG + chr5_2:55637647-55637666 Msa0776910:CDS 45.0%
! GAGTCATTGGTTGATGTTGG+AGG + chr5_2:55637787-55637806 Msa0776910:CDS 45.0%
! TCATTGGTTGATGTTGGAGG+AGG + chr5_2:55637790-55637809 Msa0776910:CDS 45.0%
GATCTCCCACATGTTGTTGA+TGG + chr5_2:55637874-55637893 Msa0776910:CDS 45.0%
GTAGTCACTAAAACCAGCCA+AGG - chr5_2:55638444-55638463 None:intergenic 45.0%
TCTACCATGGATGAGGAAGA+AGG - chr5_2:55638605-55638624 None:intergenic 45.0%
TTCTTCCTCATCCATGGTAG+AGG + chr5_2:55638604-55638623 Msa0776910:three_prime_UTR 45.0%
! ACAATGCAGAGGGATGGTTT+TGG - chr5_2:55638654-55638673 None:intergenic 45.0%
CGCATCAAGCGATAGATGCA+AGG - chr5_2:55637412-55637431 None:intergenic 50.0%
!! ACATGTGGTGCCACACTCAT+TGG - chr5_2:55637541-55637560 None:intergenic 50.0%
! GGTTGATGTTGGAGGAGGTA+CGG + chr5_2:55637795-55637814 Msa0776910:CDS 50.0%
! GTTGATGTTGGAGGAGGTAC+GGG + chr5_2:55637796-55637815 Msa0776910:CDS 50.0%
! TTGATGTTGGAGGAGGTACG+GGG + chr5_2:55637797-55637816 Msa0776910:CDS 50.0%
TCACTCCTCTACCATGGATG+AGG - chr5_2:55638612-55638631 None:intergenic 50.0%
CCACAATCACTCCTCTACCA+TGG - chr5_2:55638618-55638637 None:intergenic 50.0%
CCATGGTAGAGGAGTGATTG+TGG + chr5_2:55638615-55638634 Msa0776910:three_prime_UTR 50.0%
AGGAAGACAATGCAGAGGGA+TGG - chr5_2:55638660-55638679 None:intergenic 50.0%
CGCATCAAGCGATAGATGCA+AGG - chr5_2:55637412-55637431 None:intergenic 50.0%
!! ACATGTGGTGCCACACTCAT+TGG - chr5_2:55637541-55637560 None:intergenic 50.0%
! GGTTGATGTTGGAGGAGGTA+CGG + chr5_2:55637795-55637814 Msa0776910:CDS 50.0%
! GTTGATGTTGGAGGAGGTAC+GGG + chr5_2:55637796-55637815 Msa0776910:CDS 50.0%
! TTGATGTTGGAGGAGGTACG+GGG + chr5_2:55637797-55637816 Msa0776910:CDS 50.0%
TCACTCCTCTACCATGGATG+AGG - chr5_2:55638612-55638631 None:intergenic 50.0%
CCACAATCACTCCTCTACCA+TGG - chr5_2:55638618-55638637 None:intergenic 50.0%
CCATGGTAGAGGAGTGATTG+TGG + chr5_2:55638615-55638634 Msa0776910:three_prime_UTR 50.0%
AGGAAGACAATGCAGAGGGA+TGG - chr5_2:55638660-55638679 None:intergenic 50.0%
AGTGTGGCACCACATGTGCA+CGG + chr5_2:55637544-55637563 Msa0776910:CDS 55.0%
CTGAGTATCCCGTGCACATG+TGG - chr5_2:55637556-55637575 None:intergenic 55.0%
AGTGTGGCACCACATGTGCA+CGG + chr5_2:55637544-55637563 Msa0776910:CDS 55.0%
CTGAGTATCCCGTGCACATG+TGG - chr5_2:55637556-55637575 None:intergenic 55.0%
GTGTGGCACCACATGTGCAC+GGG + chr5_2:55637545-55637564 Msa0776910:CDS 60.0%
GTGTGGCACCACATGTGCAC+GGG + chr5_2:55637545-55637564 Msa0776910:CDS 60.0%
! TGGAGGAGGTACGGGGACCA+TGG + chr5_2:55637804-55637823 Msa0776910:CDS 65.0%
! TGGAGGAGGTACGGGGACCA+TGG + chr5_2:55637804-55637823 Msa0776910:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 55637088 55638970 55637088 ID=Msa0776910;Name=Msa0776910
chr5_2 mRNA 55637088 55638970 55637088 ID=Msa0776910-mRNA-1;Parent=Msa0776910;Name=Msa0776910-mRNA-1;_AED=0.01;_eAED=0.01;_QI=117|1|1|1|1|1|2|456|358
chr5_2 exon 55637088 55637978 55637088 ID=Msa0776910-mRNA-1:exon:16427;Parent=Msa0776910-mRNA-1
chr5_2 exon 55638212 55638970 55638212 ID=Msa0776910-mRNA-1:exon:16428;Parent=Msa0776910-mRNA-1
chr5_2 five_prime_UTR 55637088 55637204 55637088 ID=Msa0776910-mRNA-1:five_prime_utr;Parent=Msa0776910-mRNA-1
chr5_2 CDS 55637205 55637978 55637205 ID=Msa0776910-mRNA-1:cds;Parent=Msa0776910-mRNA-1
chr5_2 CDS 55638212 55638514 55638212 ID=Msa0776910-mRNA-1:cds;Parent=Msa0776910-mRNA-1
chr5_2 three_prime_UTR 55638515 55638970 55638515 ID=Msa0776910-mRNA-1:three_prime_utr;Parent=Msa0776910-mRNA-1
Gene Sequence

>Msa0776910

ATGGAATCCCAACATGGAGATAATGTTGCTTCCAATTTGCTCAAAGCTCAAAGCCACTTATGGAATCACATTTTCAACTTCATAAATTCTCTGTCACTTAAATGTGTAGTTGACTTAGGCATACCAGATATCATACACAACCATGGAAAATCCATGCCACTCTCAAAACTCATTTCTTCACTACCAATCCACCCTTCAAAAAAGCCTTGCATCTATCGCTTGATGCGAATCATGACTCACTCTGGCTTCTTCTCTCAACAAAATATTACTGAGAATGAGCTAGAGATTGAGTACATGTTAACTGATGTATCTCTATTACTACTTAAGAACAGTCCAATGAGTGTGGCACCACATGTGCACGGGATACTCAGTCCAGATATGATAGATCCATGGCATCAATTCTCTGCTTGGTTAAAAAATGATGATATTACAGCATTTGAAACAACACATGGGATGTCGTTTTGGGATTATCTTGCTCGTGACTCCAAATTTAACAACTCATTTAACGAATCAATGGCAAAAGATACTCGATTAGTTTCCGATTTGTTGGTTGAGAAGTGCAAGGGAGTGTTCCATGAAGTTGAGTCATTGGTTGATGTTGGAGGAGGTACGGGGACCATGGCAAAAACTCTTGCCAAATCATTCCCACAAATGGAATGCATTGTGTTTGATCTCCCACATGTTGTTGATGGTTTGCAAGGAAGTGAAAACTTAAACTATGTTGGTGGAGACATGTTTAAAGAAATTCCGCCAACAGATGCAATTTTGTTGAAGTCGATATTGCATGATTGGAATGACGAGGAATGTGTAAAGATATTAAAGAATTGTAAGGATGCAATATCAAAGAAAGGTAAAGGGAAGGTGGTTATCATTGACACGGTGTTAGACAAAGAGAATGGAAACATTAATGAATCAGTTGAAACACAACTCTTCTATGACATGTTGATGATGGTAGTATTCGCAGGAAAAGAGAGAAACGAGAAAGAATGGATTAAGTTGATTTCCTTGGCTGGTTTTAGTGACTACAAGATTACTCCAATTTTAGGATCAAGGTCTATGATTGAGATCTATCCATGA
Protein sequence

>Msa0776910

MESQHGDNVASNLLKAQSHLWNHIFNFINSLSLKCVVDLGIPDIIHNHGKSMPLSKLISSLPIHPSKKPCIYRLMRIMTHSGFFSQQNITENELEIEYMLTDVSLLLLKNSPMSVAPHVHGILSPDMIDPWHQFSAWLKNDDITAFETTHGMSFWDYLARDSKFNNSFNESMAKDTRLVSDLLVEKCKGVFHEVESLVDVGGGTGTMAKTLAKSFPQMECIVFDLPHVVDGLQGSENLNYVGGDMFKEIPPTDAILLKSILHDWNDEECVKILKNCKDAISKKGKGKVVIIDTVLDKENGNINESVETQLFYDMLMMVVFAGKERNEKEWIKLISLAGFSDYKITPILGSRSMIEIYP*