AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0734980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0734980 MtrunA17_Chr5g0432211 85.515 359 37 2 1 358 1 345 0.0 617
Msa0734980 MtrunA17_Chr5g0432301 83.008 359 59 2 1 357 1 359 0.0 609
Msa0734980 MtrunA17_Chr5g0432251 82.173 359 63 1 1 358 1 359 0.0 607
Msa0734980 MtrunA17_Chr5g0432241 80.833 360 67 2 1 358 1 360 0.0 594
Msa0734980 MtrunA17_Chr5g0432261 70.000 350 76 3 10 358 6 327 4.54e-179 499
Msa0734980 MtrunA17_Chr4g0040621 62.222 360 129 5 1 358 15 369 6.87e-159 450
Msa0734980 MtrunA17_Chr4g0046361 49.575 353 171 6 11 358 11 361 1.02e-116 342
Msa0734980 MtrunA17_Chr4g0014681 50.411 365 172 6 1 358 1 363 3.06e-116 341
Msa0734980 MtrunA17_Chr4g0014561 49.863 365 174 6 1 358 1 363 1.96e-114 337
Msa0734980 MtrunA17_Chr4g0046341 50.000 356 168 6 11 358 11 364 2.69e-109 323
Msa0734980 MtrunA17_Chr4g0014641 48.732 355 173 6 11 358 11 363 1.00e-108 322
Msa0734980 MtrunA17_Chr7g0219141 43.923 362 194 6 1 358 1 357 5.98e-107 317
Msa0734980 MtrunA17_Chr7g0223231 43.678 348 187 5 10 356 9 348 7.94e-103 306
Msa0734980 MtrunA17_Chr7g0223241 44.253 348 185 5 10 356 9 348 1.43e-102 306
Msa0734980 MtrunA17_Chr7g0219161 44.286 350 186 6 1 346 1 345 4.49e-102 305
Msa0734980 MtrunA17_Chr4g0014661 47.863 351 176 4 11 358 11 357 4.76e-101 302
Msa0734980 MtrunA17_Chr1g0188391 43.407 364 197 7 1 358 1 361 8.16e-99 296
Msa0734980 MtrunA17_Chr4g0046531 45.143 350 186 5 11 358 373 718 3.85e-98 306
Msa0734980 MtrunA17_Chr4g0046531 45.559 349 184 5 11 357 11 355 3.27e-97 303
Msa0734980 MtrunA17_Chr4g0014591 47.293 351 178 4 11 358 11 357 2.40e-97 293
Msa0734980 MtrunA17_Chr1g0188371 42.643 333 185 5 10 338 10 340 4.11e-86 265
Msa0734980 MtrunA17_Chr3g0121301 38.393 336 201 4 20 354 27 357 1.15e-74 235
Msa0734980 MtrunA17_Chr4g0014601 44.488 254 134 4 11 261 11 260 4.13e-72 225
Msa0734980 MtrunA17_Chr4g0021981 38.109 349 207 7 14 358 25 368 2.40e-71 226
Msa0734980 MtrunA17_Chr4g0022021 37.249 349 210 6 14 358 25 368 3.26e-66 213
Msa0734980 MtrunA17_Chr7g0276411 32.615 325 201 10 30 343 30 347 9.43e-46 160
Msa0734980 MtrunA17_Chr1g0200491 30.117 342 225 9 26 357 34 371 8.07e-45 157
Msa0734980 MtrunA17_Chr8g0367441 33.648 318 197 8 31 339 46 358 5.57e-44 155
Msa0734980 MtrunA17_Chr7g0276401 32.915 319 203 8 31 343 47 360 2.88e-43 154
Msa0734980 MtrunA17_Chr3g0128011 30.864 324 206 11 31 344 88 403 5.31e-42 151
Msa0734980 MtrunA17_Chr8g0367491 31.193 327 209 7 29 343 39 361 7.64e-42 150
Msa0734980 MtrunA17_Chr8g0367451 31.230 317 206 7 31 339 45 357 8.93e-42 150
Msa0734980 MtrunA17_Chr7g0219171 54.478 134 58 3 226 358 117 248 1.37e-41 145
Msa0734980 MtrunA17_Chr7g0219171 45.833 120 61 2 1 120 1 116 1.85e-22 94.7
Msa0734980 MtrunA17_Chr8g0367501 30.330 333 220 7 19 343 20 348 2.41e-41 149
Msa0734980 MtrunA17_Chr7g0218261 29.448 326 220 7 26 345 33 354 4.83e-41 147
Msa0734980 MtrunA17_Chr8g0345851 33.813 278 168 8 85 357 23 289 1.06e-40 144
Msa0734980 MtrunA17_Chr2g0307521 35.185 216 130 4 131 343 139 347 2.35e-40 145
Msa0734980 MtrunA17_Chr1g0163601 31.056 322 209 8 33 345 38 355 8.72e-40 144
Msa0734980 MtrunA17_Chr1g0163611 38.500 200 119 3 146 345 160 355 1.71e-39 143
Msa0734980 MtrunA17_Chr7g0218301 33.484 221 143 3 125 345 145 361 2.48e-39 143
Msa0734980 MtrunA17_Chr7g0218271 32.127 221 146 3 125 345 145 361 6.93e-39 142
Msa0734980 MtrunA17_Chr5g0448091 31.098 328 203 10 31 345 33 350 9.94e-39 141
Msa0734980 MtrunA17_Chr7g0218131 28.135 327 224 7 26 345 34 356 1.79e-38 140
Msa0734980 MtrunA17_Chr7g0218181 32.579 221 145 3 125 345 137 353 1.83e-38 140
Msa0734980 MtrunA17_Chr1g0163621 38.500 200 119 3 146 345 174 369 6.08e-38 139
Msa0734980 MtrunA17_Chr3g0085211 29.141 326 206 7 33 345 43 356 4.47e-37 137
Msa0734980 MtrunA17_Chr3g0085201 29.395 347 224 10 7 344 8 342 5.69e-37 136
Msa0734980 MtrunA17_Chr7g0218211 28.049 328 221 8 26 344 33 354 1.01e-36 136
Msa0734980 MtrunA17_Chr8g0367381 39.779 181 104 4 146 325 149 325 6.59e-35 130
Msa0734980 MtrunA17_Chr2g0314271 29.688 320 211 9 31 343 27 339 1.17e-30 119
Msa0734980 MtrunA17_Chr3g0130061 26.437 348 239 10 7 343 2 343 2.91e-27 110
Msa0734980 MtrunA17_Chr3g0130011 27.374 358 223 14 7 343 2 343 1.36e-26 108
Msa0734980 MtrunA17_Chr6g0482291 35.632 174 97 6 172 343 1 161 2.36e-22 92.8
Msa0734980 MtrunA17_Chr8g0367401 38.182 110 67 1 149 258 2 110 1.64e-20 86.7
Msa0734980 MtrunA17_Chr4g0014611 56.566 99 43 0 260 358 9 107 1.88e-19 82.8
Msa0734980 MtrunA17_Chr8g0367461 46.465 99 45 5 245 340 1 94 4.78e-19 81.6
Msa0734980 MtrunA17_Chr4g0014671 55.238 105 47 0 254 358 30 134 5.30e-17 76.6
Msa0734980 MtrunA17_Chr8g0367421 32.727 110 56 2 149 258 2 93 2.32e-14 69.3
Msa0734980 MtrunA17_Chr4g0011691 42.708 96 51 4 260 354 140 232 6.52e-14 70.5
Msa0734980 MtrunA17_Chr4g0011691 29.008 131 76 4 15 142 22 138 1.23e-12 67.0
Msa0734980 MtrunA17_Chr8g0367391 39.604 101 57 3 258 357 36 133 1.82e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0734980 AT4G35160.1 35.196 358 212 9 15 357 28 380 1.13e-60 200
Msa0734980 AT4G35150.1 33.705 359 187 10 8 357 7 323 1.32e-56 187
Msa0734980 AT5G54160.1 32.188 320 205 8 31 344 34 347 2.07e-46 162
Msa0734980 AT1G51990.2 31.193 327 211 6 43 358 39 362 1.79e-43 154
Msa0734980 AT1G51990.1 31.193 327 211 6 43 358 39 362 3.33e-43 153
Msa0734980 AT1G77520.1 30.636 346 212 10 31 357 44 380 5.38e-40 145
Msa0734980 AT1G63140.2 33.065 372 220 14 2 357 22 380 5.70e-37 137
Msa0734980 AT1G63140.4 33.065 372 220 14 2 357 42 400 7.17e-37 137
Msa0734980 AT5G53810.1 29.942 344 218 8 31 357 40 377 1.36e-36 136
Msa0734980 AT1G33030.1 31.889 323 204 11 31 344 21 336 2.49e-36 135
Msa0734980 AT3G53140.1 30.982 326 204 10 31 343 27 344 2.92e-36 135
Msa0734980 AT1G77530.1 30.233 344 216 9 31 357 44 380 6.85e-33 126
Msa0734980 AT1G21130.1 28.182 330 211 9 31 344 40 359 1.11e-31 123
Msa0734980 AT1G62900.1 39.423 208 120 4 152 357 1 204 1.41e-30 115
Msa0734980 AT1G21110.1 27.607 326 210 9 31 340 40 355 4.80e-30 118
Msa0734980 AT5G37170.2 34.171 199 126 4 161 357 38 233 8.20e-30 114
Msa0734980 AT1G21120.1 27.576 330 213 9 31 344 40 359 8.55e-30 117
Msa0734980 AT1G21120.2 27.576 330 213 9 31 344 88 407 1.70e-29 117
Msa0734980 AT1G21100.1 27.576 330 213 9 31 344 40 359 1.88e-29 117
Msa0734980 AT5G37170.1 34.171 199 126 4 161 357 138 333 2.88e-29 115
Msa0734980 AT5G37170.3 34.043 188 119 4 172 357 1 185 9.51e-27 105
Msa0734980 AT1G76790.1 24.695 328 217 7 31 339 30 346 8.54e-26 107
Msa0734980 AT1G33030.2 29.787 235 155 7 31 258 21 252 5.18e-18 83.2
Msa0734980 AT1G33030.3 29.787 235 155 7 31 258 21 252 7.94e-18 82.8
Msa0734980 AT1G63140.1 29.520 271 167 11 2 258 42 302 2.09e-17 82.0

Find 99 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTCAGTCACACAATATT+TGG 0.159363 5_1:+49981969 Msa0734980:three_prime_UTR
GTTAAATGAGTTGTTAAATT+TGG 0.170908 5_1:-49980942 None:intergenic
ATAATTAATTGAATGTATTT+TGG 0.181853 5_1:+49982056 Msa0734980:three_prime_UTR
CAACACATGGGATGTCGTTT+TGG 0.213169 5_1:+49980900 Msa0734980:CDS
ATAGACCTTGATCCTAAAAT+TGG 0.254900 5_1:-49981727 None:intergenic
TTTGTCTTAAGAGGATGATT+TGG 0.260141 5_1:+49981936 Msa0734980:three_prime_UTR
CCATGGTTGTGTATGATATC+TGG 0.301298 5_1:-49980581 None:intergenic
GATCTCCCACATGTTGTTGA+TGG 0.310559 5_1:+49981127 Msa0734980:CDS
ATTATATAACACTTGCTAAC+TGG 0.321090 5_1:-49980375 None:intergenic
TGCCATGGATCTATCATATC+TGG 0.330412 5_1:-49980830 None:intergenic
ATGCGAATCATGACTTATTC+CGG 0.334688 5_1:+49980680 Msa0734980:CDS
TACAGTCGATATTGCATGAT+TGG 0.335498 5_1:+49981461 Msa0734980:intron
TTGTCTTAAGAGGATGATTT+GGG 0.336204 5_1:+49981937 Msa0734980:three_prime_UTR
AAGTAGCTAGCTAGCAAGTA+TGG 0.339857 5_1:+49980439 Msa0734980:exon
TTTGGACATACGCACTTAAT+CGG 0.352771 5_1:+49981987 Msa0734980:three_prime_UTR
AGACAAGGAAAATACTTATA+TGG 0.355177 5_1:-49982121 None:intergenic
TCAAAGCTCAAAGCCACTTA+TGG 0.367540 5_1:+49980498 Msa0734980:CDS
TCGATCAACAAGATTTGAAC+TGG 0.372789 5_1:-49980412 None:intergenic
CAACCAATGACTCAACTTCA+TGG 0.372843 5_1:-49981030 None:intergenic
ACAATGCAGAGGGATGGTTT+TGG 0.380712 5_1:-49981905 None:intergenic
TCGATTAGTTTCCGATTTGT+TGG 0.382710 5_1:+49980985 Msa0734980:CDS
TGCCAAATCATTCCCACAAA+TGG 0.391775 5_1:+49981090 Msa0734980:CDS
TGAAAATGTGATTCCATAAG+TGG 0.393208 5_1:-49980511 None:intergenic
TTCCATTTGTGGGAATGATT+TGG 0.394430 5_1:-49981092 None:intergenic
GCTTTGAGCTTTGAGCAAAT+TGG 0.396268 5_1:-49980489 None:intergenic
GTTGATGTTGGAGGAGGTAC+GGG 0.411565 5_1:+49981049 Msa0734980:CDS
AAGAGAGAAACGAGAAAGAA+TGG 0.424421 5_1:+49981659 Msa0734980:CDS
AACAAAATTGCATCTGTTGG+CGG 0.431252 5_1:-49981205 None:intergenic
AACACAATGCATTCCATTTG+TGG 0.431379 5_1:-49981103 None:intergenic
ATGGATTAAGTTGATTTCCT+TGG 0.431482 5_1:+49981678 Msa0734980:CDS
GTTCCATGAAGTTGAGTCAT+TGG 0.432542 5_1:+49981027 Msa0734980:CDS
CAACTCATTTAACGAATCAA+TGG 0.437712 5_1:+49980952 Msa0734980:CDS
AGCAACATTATCTCCATGTT+GGG 0.440877 5_1:-49980465 None:intergenic
CTTAAATGTGTAGTTGACTT+AGG 0.449531 5_1:+49980554 Msa0734980:CDS
GCAATATCAAAGAAAGGTAA+AGG 0.460727 5_1:+49981526 Msa0734980:CDS
CTTATATGGTCACAATAGCT+TGG 0.463243 5_1:-49982107 None:intergenic
GCACTTCTCAACCAACAAAT+CGG 0.467046 5_1:-49980996 None:intergenic
TTCTTCCTCATCCACGGTAG+AGG 0.467948 5_1:+49981858 Msa0734980:three_prime_UTR
CATGGCATCAATTCTCTGCT+TGG 0.468036 5_1:+49980846 Msa0734980:CDS
GTTGAGTCATTGGTTGATGT+TGG 0.468409 5_1:+49981037 Msa0734980:CDS
ATTAAGTTGATTTCCTTGGC+TGG 0.468848 5_1:+49981682 Msa0734980:CDS
GGTTGATGTTGGAGGAGGTA+CGG 0.474379 5_1:+49981048 Msa0734980:CDS
CCAAATATTGTGTGACTGAA+TGG 0.482917 5_1:-49981969 None:intergenic
TTCAACAAAATTGCATCTGT+TGG 0.490404 5_1:-49981208 None:intergenic
GCACTTAATCGGAAAATAAG+TGG 0.499566 5_1:+49981998 Msa0734980:three_prime_UTR
ACACAATGCATTCCATTTGT+GGG 0.501519 5_1:-49981102 None:intergenic
AAAGATATTAAAGAATTGTA+AGG 0.505831 5_1:+49981501 Msa0734980:CDS
TTATATGGTCACAATAGCTT+GGG 0.511873 5_1:-49982106 None:intergenic
GGAATAGAGATGTAGAGAAA+CGG 0.514416 5_1:-49981835 None:intergenic
AACATTGTGATGATGACAAA+TGG 0.517874 5_1:-49981790 None:intergenic
AAGCAACATTATCTCCATGT+TGG 0.524077 5_1:-49980466 None:intergenic
ACATGTGGTGCCACACTCAT+TGG 0.525895 5_1:-49980791 None:intergenic
AGTGAAAACTTAAACTATGT+TGG 0.531848 5_1:+49981160 Msa0734980:CDS
CAATATCAAAGAAAGGTAAA+GGG 0.532814 5_1:+49981527 Msa0734980:CDS
TCACTCCTCTACCGTGGATG+AGG 0.542925 5_1:-49981863 None:intergenic
TTGATGATGGTAGTATTCGC+AGG 0.543043 5_1:+49981634 Msa0734980:CDS
CGATCAACAAGATTTGAACT+GGG 0.544734 5_1:-49980411 None:intergenic
AAGGATGCAATATCAAAGAA+AGG 0.545671 5_1:+49981520 Msa0734980:CDS
TCATCCTCTTAAGACAAAAG+AGG 0.545757 5_1:-49981931 None:intergenic
GAAAACTTAAACTATGTTGG+TGG 0.548643 5_1:+49981163 Msa0734980:CDS
CATCCTCTTAAGACAAAAGA+GGG 0.549685 5_1:-49981930 None:intergenic
CTTCTATGACATGTTGATGA+TGG 0.553245 5_1:+49981621 Msa0734980:CDS
TCTACCGTGGATGAGGAAGA+AGG 0.556802 5_1:-49981856 None:intergenic
CATGTTGTTGATGGTTTGCA+AGG 0.557883 5_1:+49981136 Msa0734980:CDS
TATTCCTTCTTCCTCATCCA+CGG 0.561235 5_1:+49981852 Msa0734980:three_prime_UTR
CGCATCAAGCGATAGATGCA+AGG 0.562811 5_1:-49980662 None:intergenic
ACGGTGTTAGACAAAGAGAA+TGG 0.563271 5_1:+49981568 Msa0734980:CDS
GAGTCATTGGTTGATGTTGG+AGG 0.570761 5_1:+49981040 Msa0734980:CDS
TGCAAACCATCAACAACATG+TGG 0.573332 5_1:-49981133 None:intergenic
AAAGAAAGGTAAAGGGAAGG+TGG 0.580286 5_1:+49981534 Msa0734980:CDS
CCACGGTAGAGGAGTGATTG+TGG 0.581604 5_1:+49981869 Msa0734980:three_prime_UTR
TGGAGGAGGTACGGGGACCA+TGG 0.588947 5_1:+49981057 Msa0734980:CDS
CAAGCAGAGAATTGATGCCA+TGG 0.591666 5_1:-49980845 None:intergenic
CTGAGTATCCCGTGCACATG+TGG 0.594919 5_1:-49980806 None:intergenic
GTAGTCACTAAAACCAGCCA+AGG 0.595683 5_1:-49981695 None:intergenic
TTGTTGGTTGAGAAGTGCAA+GGG 0.598365 5_1:+49981001 Msa0734980:CDS
TTTGTTGGTTGAGAAGTGCA+AGG 0.604264 5_1:+49981000 Msa0734980:CDS
GTCCAGATATGATAGATCCA+TGG 0.611089 5_1:+49980828 Msa0734980:CDS
ATCAAAGAAAGGTAAAGGGA+AGG 0.618639 5_1:+49981531 Msa0734980:CDS
TCATTGGTTGATGTTGGAGG+AGG 0.622074 5_1:+49981043 Msa0734980:CDS
TCTTAAGAGGATGATTTGGG+TGG 0.624562 5_1:+49981940 Msa0734980:three_prime_UTR
AGGGAGACAATGCAGAGGGA+TGG 0.628535 5_1:-49981911 None:intergenic
ATCAACAAGATTTGAACTGG+GGG 0.636051 5_1:-49980409 None:intergenic
TTGATGTTGGAGGAGGTACG+GGG 0.638274 5_1:+49981050 Msa0734980:CDS
GCAAGTATGGAATCCCAACA+TGG 0.639120 5_1:+49980452 Msa0734980:exon
GAAAATCACTTATTTAGACA+AGG 0.642671 5_1:-49982136 None:intergenic
GTGTGGCACCACATGTGCAC+GGG 0.643351 5_1:+49980798 Msa0734980:CDS
CCAGATATCATACACAACCA+TGG 0.643900 5_1:+49980581 Msa0734980:CDS
ACAGCATTTGAAACAACACA+TGG 0.644519 5_1:+49980887 Msa0734980:CDS
AGTGTGGCACCACATGTGCA+CGG 0.654606 5_1:+49980797 Msa0734980:CDS
AAAGAGGGAGACAATGCAGA+GGG 0.658598 5_1:-49981915 None:intergenic
GATCAACAAGATTTGAACTG+GGG 0.663002 5_1:-49980410 None:intergenic
AAAAGAGGGAGACAATGCAG+AGG 0.667854 5_1:-49981916 None:intergenic
TAAGAACAGTCCAATGAGTG+TGG 0.672166 5_1:+49980781 Msa0734980:CDS
CCACAATCACTCCTCTACCG+TGG 0.683105 5_1:-49981869 None:intergenic
GCAAACCATCAACAACATGT+GGG 0.690290 5_1:-49981132 None:intergenic
GAAGGTGGTTATCATTGACA+CGG 0.700974 5_1:+49981549 Msa0734980:CDS
ATTGCATGATTGGAATGACG+AGG 0.708926 5_1:+49981471 Msa0734980:CDS
CAGCATTTGAAACAACACAT+GGG 0.716263 5_1:+49980888 Msa0734980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTGATTTTTTTTTTCT+TGG + chr5_1:49981283-49981302 Msa0734980:intron 10.0%
!!! ATAATTAATTGAATGTATTT+TGG + chr5_1:49982056-49982075 Msa0734980:three_prime_UTR 10.0%
!!! TAATTTGATTTTTTTTTTCT+TGG + chr5_1:49981283-49981302 Msa0734980:intron 10.0%
!!! ATAATTAATTGAATGTATTT+TGG + chr5_1:49982056-49982075 Msa0734980:three_prime_UTR 10.0%
!!! TATATTAGTTTACACATTAT+AGG + chr5_1:49981258-49981277 Msa0734980:intron 15.0%
!!! ATATTAGTTTACACATTATA+GGG + chr5_1:49981259-49981278 Msa0734980:intron 15.0%
!! AAGGAAAAATATTATCTAAT+TGG - chr5_1:49981363-49981382 None:intergenic 15.0%
!! AAAGATATTAAAGAATTGTA+AGG + chr5_1:49981501-49981520 Msa0734980:CDS 15.0%
!!! TATATTAGTTTACACATTAT+AGG + chr5_1:49981258-49981277 Msa0734980:intron 15.0%
!!! ATATTAGTTTACACATTATA+GGG + chr5_1:49981259-49981278 Msa0734980:intron 15.0%
!! AAGGAAAAATATTATCTAAT+TGG - chr5_1:49981363-49981382 None:intergenic 15.0%
!! AAAGATATTAAAGAATTGTA+AGG + chr5_1:49981501-49981520 Msa0734980:CDS 15.0%
!! GTTAAATGAGTTGTTAAATT+TGG - chr5_1:49980945-49980964 None:intergenic 20.0%
!!! ATTTTATAGATTATGGATCA+TGG - chr5_1:49981766-49981785 None:intergenic 20.0%
!! GTTAAATGAGTTGTTAAATT+TGG - chr5_1:49980945-49980964 None:intergenic 20.0%
!!! ATTTTATAGATTATGGATCA+TGG - chr5_1:49981766-49981785 None:intergenic 20.0%
!! ATTATATAACACTTGCTAAC+TGG - chr5_1:49980378-49980397 None:intergenic 25.0%
! AGTGAAAACTTAAACTATGT+TGG + chr5_1:49981160-49981179 Msa0734980:CDS 25.0%
!!! TTTTTTTCTTGGTACAAAAG+AGG + chr5_1:49981294-49981313 Msa0734980:intron 25.0%
!!! TTTTTTCTTGGTACAAAAGA+GGG + chr5_1:49981295-49981314 Msa0734980:intron 25.0%
!! CCATATTTTTCTACTAATGA+CGG + chr5_1:49981337-49981356 Msa0734980:intron 25.0%
! AGTGGAAAAAATAGAAAACA+AGG - chr5_1:49981382-49981401 None:intergenic 25.0%
! CAATATCAAAGAAAGGTAAA+GGG + chr5_1:49981527-49981546 Msa0734980:CDS 25.0%
!! TACAAGATTACTCCAATTTT+AGG + chr5_1:49981715-49981734 Msa0734980:CDS 25.0%
!! TGGCTAGATTTTATAGATTA+TGG - chr5_1:49981773-49981792 None:intergenic 25.0%
! AGACAAGGAAAATACTTATA+TGG - chr5_1:49982124-49982143 None:intergenic 25.0%
! GAAAATCACTTATTTAGACA+AGG - chr5_1:49982139-49982158 None:intergenic 25.0%
!! ATTATATAACACTTGCTAAC+TGG - chr5_1:49980378-49980397 None:intergenic 25.0%
! AGTGAAAACTTAAACTATGT+TGG + chr5_1:49981160-49981179 Msa0734980:CDS 25.0%
!!! TTTTTTTCTTGGTACAAAAG+AGG + chr5_1:49981294-49981313 Msa0734980:intron 25.0%
!!! TTTTTTCTTGGTACAAAAGA+GGG + chr5_1:49981295-49981314 Msa0734980:intron 25.0%
!! CCATATTTTTCTACTAATGA+CGG + chr5_1:49981337-49981356 Msa0734980:intron 25.0%
! AGTGGAAAAAATAGAAAACA+AGG - chr5_1:49981382-49981401 None:intergenic 25.0%
! CAATATCAAAGAAAGGTAAA+GGG + chr5_1:49981527-49981546 Msa0734980:CDS 25.0%
!! TACAAGATTACTCCAATTTT+AGG + chr5_1:49981715-49981734 Msa0734980:CDS 25.0%
!! TGGCTAGATTTTATAGATTA+TGG - chr5_1:49981773-49981792 None:intergenic 25.0%
! AGACAAGGAAAATACTTATA+TGG - chr5_1:49982124-49982143 None:intergenic 25.0%
! GAAAATCACTTATTTAGACA+AGG - chr5_1:49982139-49982158 None:intergenic 25.0%
TGAAAATGTGATTCCATAAG+TGG - chr5_1:49980514-49980533 None:intergenic 30.0%
! CTTAAATGTGTAGTTGACTT+AGG + chr5_1:49980554-49980573 Msa0734980:CDS 30.0%
CAACTCATTTAACGAATCAA+TGG + chr5_1:49980952-49980971 Msa0734980:CDS 30.0%
GAAAACTTAAACTATGTTGG+TGG + chr5_1:49981163-49981182 Msa0734980:CDS 30.0%
TTCAACAAAATTGCATCTGT+TGG - chr5_1:49981211-49981230 None:intergenic 30.0%
! AACAGATGCAATTTTGTTGA+AGG + chr5_1:49981210-49981229 Msa0734980:CDS 30.0%
! TTTTTCTTGGTACAAAAGAG+GGG + chr5_1:49981296-49981315 Msa0734980:intron 30.0%
CCGTCATTAGTAGAAAAATA+TGG - chr5_1:49981340-49981359 None:intergenic 30.0%
GAAAAGAGAACAAACTAAAG+TGG - chr5_1:49981400-49981419 None:intergenic 30.0%
! TATGTTTGAGTTACGAAAGA+AGG - chr5_1:49981428-49981447 None:intergenic 30.0%
AAGGATGCAATATCAAAGAA+AGG + chr5_1:49981520-49981539 Msa0734980:CDS 30.0%
GCAATATCAAAGAAAGGTAA+AGG + chr5_1:49981526-49981545 Msa0734980:CDS 30.0%
!! ATGGATTAAGTTGATTTCCT+TGG + chr5_1:49981678-49981697 Msa0734980:CDS 30.0%
!!! TTACTCCAATTTTAGGATCA+AGG + chr5_1:49981722-49981741 Msa0734980:CDS 30.0%
ATAGACCTTGATCCTAAAAT+TGG - chr5_1:49981730-49981749 None:intergenic 30.0%
! AACATTGTGATGATGACAAA+TGG - chr5_1:49981793-49981812 None:intergenic 30.0%
TTTGTCTTAAGAGGATGATT+TGG + chr5_1:49981936-49981955 Msa0734980:three_prime_UTR 30.0%
TTGTCTTAAGAGGATGATTT+GGG + chr5_1:49981937-49981956 Msa0734980:three_prime_UTR 30.0%
TTATATGGTCACAATAGCTT+GGG - chr5_1:49982109-49982128 None:intergenic 30.0%
TGAAAATGTGATTCCATAAG+TGG - chr5_1:49980514-49980533 None:intergenic 30.0%
! CTTAAATGTGTAGTTGACTT+AGG + chr5_1:49980554-49980573 Msa0734980:CDS 30.0%
CAACTCATTTAACGAATCAA+TGG + chr5_1:49980952-49980971 Msa0734980:CDS 30.0%
GAAAACTTAAACTATGTTGG+TGG + chr5_1:49981163-49981182 Msa0734980:CDS 30.0%
TTCAACAAAATTGCATCTGT+TGG - chr5_1:49981211-49981230 None:intergenic 30.0%
! AACAGATGCAATTTTGTTGA+AGG + chr5_1:49981210-49981229 Msa0734980:CDS 30.0%
! TTTTTCTTGGTACAAAAGAG+GGG + chr5_1:49981296-49981315 Msa0734980:intron 30.0%
CCGTCATTAGTAGAAAAATA+TGG - chr5_1:49981340-49981359 None:intergenic 30.0%
GAAAAGAGAACAAACTAAAG+TGG - chr5_1:49981400-49981419 None:intergenic 30.0%
! TATGTTTGAGTTACGAAAGA+AGG - chr5_1:49981428-49981447 None:intergenic 30.0%
AAGGATGCAATATCAAAGAA+AGG + chr5_1:49981520-49981539 Msa0734980:CDS 30.0%
GCAATATCAAAGAAAGGTAA+AGG + chr5_1:49981526-49981545 Msa0734980:CDS 30.0%
!! ATGGATTAAGTTGATTTCCT+TGG + chr5_1:49981678-49981697 Msa0734980:CDS 30.0%
!!! TTACTCCAATTTTAGGATCA+AGG + chr5_1:49981722-49981741 Msa0734980:CDS 30.0%
ATAGACCTTGATCCTAAAAT+TGG - chr5_1:49981730-49981749 None:intergenic 30.0%
! AACATTGTGATGATGACAAA+TGG - chr5_1:49981793-49981812 None:intergenic 30.0%
TTTGTCTTAAGAGGATGATT+TGG + chr5_1:49981936-49981955 Msa0734980:three_prime_UTR 30.0%
TTGTCTTAAGAGGATGATTT+GGG + chr5_1:49981937-49981956 Msa0734980:three_prime_UTR 30.0%
TTATATGGTCACAATAGCTT+GGG - chr5_1:49982109-49982128 None:intergenic 30.0%
ATCAACAAGATTTGAACTGG+GGG - chr5_1:49980412-49980431 None:intergenic 35.0%
GATCAACAAGATTTGAACTG+GGG - chr5_1:49980413-49980432 None:intergenic 35.0%
CGATCAACAAGATTTGAACT+GGG - chr5_1:49980414-49980433 None:intergenic 35.0%
TCGATCAACAAGATTTGAAC+TGG - chr5_1:49980415-49980434 None:intergenic 35.0%
AGCAACATTATCTCCATGTT+GGG - chr5_1:49980468-49980487 None:intergenic 35.0%
AAGCAACATTATCTCCATGT+TGG - chr5_1:49980469-49980488 None:intergenic 35.0%
!!! GAAGAAATGAGTTTTGAGAG+TGG - chr5_1:49980617-49980636 None:intergenic 35.0%
!!! AGATGCAAGGCTTTTTTGAA+GGG - chr5_1:49980652-49980671 None:intergenic 35.0%
!!! TAGATGCAAGGCTTTTTTGA+AGG - chr5_1:49980653-49980672 None:intergenic 35.0%
ATGCGAATCATGACTTATTC+CGG + chr5_1:49980680-49980699 Msa0734980:CDS 35.0%
! ATTTTGTTGAGAGAAGAAGC+CGG - chr5_1:49980702-49980721 None:intergenic 35.0%
! ACAGCATTTGAAACAACACA+TGG + chr5_1:49980887-49980906 Msa0734980:CDS 35.0%
! CAGCATTTGAAACAACACAT+GGG + chr5_1:49980888-49980907 Msa0734980:CDS 35.0%
!! TCGATTAGTTTCCGATTTGT+TGG + chr5_1:49980985-49981004 Msa0734980:CDS 35.0%
TTCCATTTGTGGGAATGATT+TGG - chr5_1:49981095-49981114 None:intergenic 35.0%
ACACAATGCATTCCATTTGT+GGG - chr5_1:49981105-49981124 None:intergenic 35.0%
AACACAATGCATTCCATTTG+TGG - chr5_1:49981106-49981125 None:intergenic 35.0%
AACAAAATTGCATCTGTTGG+CGG - chr5_1:49981208-49981227 None:intergenic 35.0%
TACAGTCGATATTGCATGAT+TGG + chr5_1:49981461-49981480 Msa0734980:intron 35.0%
ATCAAAGAAAGGTAAAGGGA+AGG + chr5_1:49981531-49981550 Msa0734980:CDS 35.0%
! CTTCTATGACATGTTGATGA+TGG + chr5_1:49981621-49981640 Msa0734980:CDS 35.0%
AAGAGAGAAACGAGAAAGAA+TGG + chr5_1:49981659-49981678 Msa0734980:CDS 35.0%
!! ATTAAGTTGATTTCCTTGGC+TGG + chr5_1:49981682-49981701 Msa0734980:CDS 35.0%
GGAATAGAGATGTAGAGAAA+CGG - chr5_1:49981838-49981857 None:intergenic 35.0%
CATCCTCTTAAGACAAAAGA+GGG - chr5_1:49981933-49981952 None:intergenic 35.0%
TCATCCTCTTAAGACAAAAG+AGG - chr5_1:49981934-49981953 None:intergenic 35.0%
CCAAATATTGTGTGACTGAA+TGG - chr5_1:49981972-49981991 None:intergenic 35.0%
CCATTCAGTCACACAATATT+TGG + chr5_1:49981969-49981988 Msa0734980:three_prime_UTR 35.0%
TTTGGACATACGCACTTAAT+CGG + chr5_1:49981987-49982006 Msa0734980:three_prime_UTR 35.0%
GCACTTAATCGGAAAATAAG+TGG + chr5_1:49981998-49982017 Msa0734980:three_prime_UTR 35.0%
CTTATATGGTCACAATAGCT+TGG - chr5_1:49982110-49982129 None:intergenic 35.0%
ATCAACAAGATTTGAACTGG+GGG - chr5_1:49980412-49980431 None:intergenic 35.0%
GATCAACAAGATTTGAACTG+GGG - chr5_1:49980413-49980432 None:intergenic 35.0%
CGATCAACAAGATTTGAACT+GGG - chr5_1:49980414-49980433 None:intergenic 35.0%
TCGATCAACAAGATTTGAAC+TGG - chr5_1:49980415-49980434 None:intergenic 35.0%
AGCAACATTATCTCCATGTT+GGG - chr5_1:49980468-49980487 None:intergenic 35.0%
AAGCAACATTATCTCCATGT+TGG - chr5_1:49980469-49980488 None:intergenic 35.0%
!!! GAAGAAATGAGTTTTGAGAG+TGG - chr5_1:49980617-49980636 None:intergenic 35.0%
!!! AGATGCAAGGCTTTTTTGAA+GGG - chr5_1:49980652-49980671 None:intergenic 35.0%
!!! TAGATGCAAGGCTTTTTTGA+AGG - chr5_1:49980653-49980672 None:intergenic 35.0%
ATGCGAATCATGACTTATTC+CGG + chr5_1:49980680-49980699 Msa0734980:CDS 35.0%
! ATTTTGTTGAGAGAAGAAGC+CGG - chr5_1:49980702-49980721 None:intergenic 35.0%
! ACAGCATTTGAAACAACACA+TGG + chr5_1:49980887-49980906 Msa0734980:CDS 35.0%
! CAGCATTTGAAACAACACAT+GGG + chr5_1:49980888-49980907 Msa0734980:CDS 35.0%
!! TCGATTAGTTTCCGATTTGT+TGG + chr5_1:49980985-49981004 Msa0734980:CDS 35.0%
TTCCATTTGTGGGAATGATT+TGG - chr5_1:49981095-49981114 None:intergenic 35.0%
ACACAATGCATTCCATTTGT+GGG - chr5_1:49981105-49981124 None:intergenic 35.0%
AACACAATGCATTCCATTTG+TGG - chr5_1:49981106-49981125 None:intergenic 35.0%
AACAAAATTGCATCTGTTGG+CGG - chr5_1:49981208-49981227 None:intergenic 35.0%
TACAGTCGATATTGCATGAT+TGG + chr5_1:49981461-49981480 Msa0734980:intron 35.0%
ATCAAAGAAAGGTAAAGGGA+AGG + chr5_1:49981531-49981550 Msa0734980:CDS 35.0%
! CTTCTATGACATGTTGATGA+TGG + chr5_1:49981621-49981640 Msa0734980:CDS 35.0%
AAGAGAGAAACGAGAAAGAA+TGG + chr5_1:49981659-49981678 Msa0734980:CDS 35.0%
!! ATTAAGTTGATTTCCTTGGC+TGG + chr5_1:49981682-49981701 Msa0734980:CDS 35.0%
GGAATAGAGATGTAGAGAAA+CGG - chr5_1:49981838-49981857 None:intergenic 35.0%
CATCCTCTTAAGACAAAAGA+GGG - chr5_1:49981933-49981952 None:intergenic 35.0%
TCATCCTCTTAAGACAAAAG+AGG - chr5_1:49981934-49981953 None:intergenic 35.0%
CCAAATATTGTGTGACTGAA+TGG - chr5_1:49981972-49981991 None:intergenic 35.0%
CCATTCAGTCACACAATATT+TGG + chr5_1:49981969-49981988 Msa0734980:three_prime_UTR 35.0%
TTTGGACATACGCACTTAAT+CGG + chr5_1:49981987-49982006 Msa0734980:three_prime_UTR 35.0%
GCACTTAATCGGAAAATAAG+TGG + chr5_1:49981998-49982017 Msa0734980:three_prime_UTR 35.0%
CTTATATGGTCACAATAGCT+TGG - chr5_1:49982110-49982129 None:intergenic 35.0%
AAGTAGCTAGCTAGCAAGTA+TGG + chr5_1:49980439-49980458 Msa0734980:exon 40.0%
!! GCTTTGAGCTTTGAGCAAAT+TGG - chr5_1:49980492-49980511 None:intergenic 40.0%
TCAAAGCTCAAAGCCACTTA+TGG + chr5_1:49980498-49980517 Msa0734980:CDS 40.0%
CCATGGTTGTGTATGATATC+TGG - chr5_1:49980584-49980603 None:intergenic 40.0%
CCAGATATCATACACAACCA+TGG + chr5_1:49980581-49980600 Msa0734980:CDS 40.0%
!!! ATGAGTTTTGAGAGTGGCAT+GGG - chr5_1:49980611-49980630 None:intergenic 40.0%
!!! AATGAGTTTTGAGAGTGGCA+TGG - chr5_1:49980612-49980631 None:intergenic 40.0%
TAAGAACAGTCCAATGAGTG+TGG + chr5_1:49980781-49980800 Msa0734980:CDS 40.0%
GTCCAGATATGATAGATCCA+TGG + chr5_1:49980828-49980847 Msa0734980:CDS 40.0%
TGCCATGGATCTATCATATC+TGG - chr5_1:49980833-49980852 None:intergenic 40.0%
!!! AACACATGGGATGTCGTTTT+GGG + chr5_1:49980901-49980920 Msa0734980:CDS 40.0%
GCACTTCTCAACCAACAAAT+CGG - chr5_1:49980999-49981018 None:intergenic 40.0%
! TTTGTTGGTTGAGAAGTGCA+AGG + chr5_1:49981000-49981019 Msa0734980:CDS 40.0%
! TTGTTGGTTGAGAAGTGCAA+GGG + chr5_1:49981001-49981020 Msa0734980:CDS 40.0%
GTTCCATGAAGTTGAGTCAT+TGG + chr5_1:49981027-49981046 Msa0734980:CDS 40.0%
CAACCAATGACTCAACTTCA+TGG - chr5_1:49981033-49981052 None:intergenic 40.0%
! GTTGAGTCATTGGTTGATGT+TGG + chr5_1:49981037-49981056 Msa0734980:CDS 40.0%
! TTTGGCAAGAGTTTTTGCCA+TGG - chr5_1:49981077-49981096 None:intergenic 40.0%
TGCCAAATCATTCCCACAAA+TGG + chr5_1:49981090-49981109 Msa0734980:CDS 40.0%
GCAAACCATCAACAACATGT+GGG - chr5_1:49981135-49981154 None:intergenic 40.0%
TGCAAACCATCAACAACATG+TGG - chr5_1:49981136-49981155 None:intergenic 40.0%
!! CATGTTGTTGATGGTTTGCA+AGG + chr5_1:49981136-49981155 Msa0734980:CDS 40.0%
ATTGCATGATTGGAATGACG+AGG + chr5_1:49981471-49981490 Msa0734980:CDS 40.0%
AAAGAAAGGTAAAGGGAAGG+TGG + chr5_1:49981534-49981553 Msa0734980:CDS 40.0%
GAAGGTGGTTATCATTGACA+CGG + chr5_1:49981549-49981568 Msa0734980:CDS 40.0%
! ACGGTGTTAGACAAAGAGAA+TGG + chr5_1:49981568-49981587 Msa0734980:CDS 40.0%
!! TTGATGATGGTAGTATTCGC+AGG + chr5_1:49981634-49981653 Msa0734980:CDS 40.0%
TATTCCTTCTTCCTCATCCA+CGG + chr5_1:49981852-49981871 Msa0734980:three_prime_UTR 40.0%
! TCTCCCTCTTTTGTCTTAAG+AGG + chr5_1:49981927-49981946 Msa0734980:three_prime_UTR 40.0%
! TCTTAAGAGGATGATTTGGG+TGG + chr5_1:49981940-49981959 Msa0734980:three_prime_UTR 40.0%
AAGTAGCTAGCTAGCAAGTA+TGG + chr5_1:49980439-49980458 Msa0734980:exon 40.0%
!! GCTTTGAGCTTTGAGCAAAT+TGG - chr5_1:49980492-49980511 None:intergenic 40.0%
TCAAAGCTCAAAGCCACTTA+TGG + chr5_1:49980498-49980517 Msa0734980:CDS 40.0%
CCATGGTTGTGTATGATATC+TGG - chr5_1:49980584-49980603 None:intergenic 40.0%
CCAGATATCATACACAACCA+TGG + chr5_1:49980581-49980600 Msa0734980:CDS 40.0%
!!! ATGAGTTTTGAGAGTGGCAT+GGG - chr5_1:49980611-49980630 None:intergenic 40.0%
!!! AATGAGTTTTGAGAGTGGCA+TGG - chr5_1:49980612-49980631 None:intergenic 40.0%
TAAGAACAGTCCAATGAGTG+TGG + chr5_1:49980781-49980800 Msa0734980:CDS 40.0%
GTCCAGATATGATAGATCCA+TGG + chr5_1:49980828-49980847 Msa0734980:CDS 40.0%
TGCCATGGATCTATCATATC+TGG - chr5_1:49980833-49980852 None:intergenic 40.0%
!!! AACACATGGGATGTCGTTTT+GGG + chr5_1:49980901-49980920 Msa0734980:CDS 40.0%
GCACTTCTCAACCAACAAAT+CGG - chr5_1:49980999-49981018 None:intergenic 40.0%
! TTTGTTGGTTGAGAAGTGCA+AGG + chr5_1:49981000-49981019 Msa0734980:CDS 40.0%
! TTGTTGGTTGAGAAGTGCAA+GGG + chr5_1:49981001-49981020 Msa0734980:CDS 40.0%
GTTCCATGAAGTTGAGTCAT+TGG + chr5_1:49981027-49981046 Msa0734980:CDS 40.0%
CAACCAATGACTCAACTTCA+TGG - chr5_1:49981033-49981052 None:intergenic 40.0%
! GTTGAGTCATTGGTTGATGT+TGG + chr5_1:49981037-49981056 Msa0734980:CDS 40.0%
! TTTGGCAAGAGTTTTTGCCA+TGG - chr5_1:49981077-49981096 None:intergenic 40.0%
TGCCAAATCATTCCCACAAA+TGG + chr5_1:49981090-49981109 Msa0734980:CDS 40.0%
GCAAACCATCAACAACATGT+GGG - chr5_1:49981135-49981154 None:intergenic 40.0%
TGCAAACCATCAACAACATG+TGG - chr5_1:49981136-49981155 None:intergenic 40.0%
!! CATGTTGTTGATGGTTTGCA+AGG + chr5_1:49981136-49981155 Msa0734980:CDS 40.0%
ATTGCATGATTGGAATGACG+AGG + chr5_1:49981471-49981490 Msa0734980:CDS 40.0%
AAAGAAAGGTAAAGGGAAGG+TGG + chr5_1:49981534-49981553 Msa0734980:CDS 40.0%
GAAGGTGGTTATCATTGACA+CGG + chr5_1:49981549-49981568 Msa0734980:CDS 40.0%
! ACGGTGTTAGACAAAGAGAA+TGG + chr5_1:49981568-49981587 Msa0734980:CDS 40.0%
!! TTGATGATGGTAGTATTCGC+AGG + chr5_1:49981634-49981653 Msa0734980:CDS 40.0%
TATTCCTTCTTCCTCATCCA+CGG + chr5_1:49981852-49981871 Msa0734980:three_prime_UTR 40.0%
! TCTCCCTCTTTTGTCTTAAG+AGG + chr5_1:49981927-49981946 Msa0734980:three_prime_UTR 40.0%
! TCTTAAGAGGATGATTTGGG+TGG + chr5_1:49981940-49981959 Msa0734980:three_prime_UTR 40.0%
GCAAGTATGGAATCCCAACA+TGG + chr5_1:49980452-49980471 Msa0734980:exon 45.0%
!!! GGCTTTTTTGAAGGGTGGAT+TGG - chr5_1:49980644-49980663 None:intergenic 45.0%
!!! TGCAAGGCTTTTTTGAAGGG+TGG - chr5_1:49980649-49980668 None:intergenic 45.0%
CAAGCAGAGAATTGATGCCA+TGG - chr5_1:49980848-49980867 None:intergenic 45.0%
CATGGCATCAATTCTCTGCT+TGG + chr5_1:49980846-49980865 Msa0734980:CDS 45.0%
!! CAACACATGGGATGTCGTTT+TGG + chr5_1:49980900-49980919 Msa0734980:CDS 45.0%
! GAGTCATTGGTTGATGTTGG+AGG + chr5_1:49981040-49981059 Msa0734980:CDS 45.0%
! TCATTGGTTGATGTTGGAGG+AGG + chr5_1:49981043-49981062 Msa0734980:CDS 45.0%
GATCTCCCACATGTTGTTGA+TGG + chr5_1:49981127-49981146 Msa0734980:CDS 45.0%
GTAGTCACTAAAACCAGCCA+AGG - chr5_1:49981698-49981717 None:intergenic 45.0%
! ACAATGCAGAGGGATGGTTT+TGG - chr5_1:49981908-49981927 None:intergenic 45.0%
AAAGAGGGAGACAATGCAGA+GGG - chr5_1:49981918-49981937 None:intergenic 45.0%
AAAAGAGGGAGACAATGCAG+AGG - chr5_1:49981919-49981938 None:intergenic 45.0%
GCAAGTATGGAATCCCAACA+TGG + chr5_1:49980452-49980471 Msa0734980:exon 45.0%
!!! GGCTTTTTTGAAGGGTGGAT+TGG - chr5_1:49980644-49980663 None:intergenic 45.0%
!!! TGCAAGGCTTTTTTGAAGGG+TGG - chr5_1:49980649-49980668 None:intergenic 45.0%
CAAGCAGAGAATTGATGCCA+TGG - chr5_1:49980848-49980867 None:intergenic 45.0%
CATGGCATCAATTCTCTGCT+TGG + chr5_1:49980846-49980865 Msa0734980:CDS 45.0%
!! CAACACATGGGATGTCGTTT+TGG + chr5_1:49980900-49980919 Msa0734980:CDS 45.0%
! GAGTCATTGGTTGATGTTGG+AGG + chr5_1:49981040-49981059 Msa0734980:CDS 45.0%
! TCATTGGTTGATGTTGGAGG+AGG + chr5_1:49981043-49981062 Msa0734980:CDS 45.0%
GATCTCCCACATGTTGTTGA+TGG + chr5_1:49981127-49981146 Msa0734980:CDS 45.0%
GTAGTCACTAAAACCAGCCA+AGG - chr5_1:49981698-49981717 None:intergenic 45.0%
! ACAATGCAGAGGGATGGTTT+TGG - chr5_1:49981908-49981927 None:intergenic 45.0%
AAAGAGGGAGACAATGCAGA+GGG - chr5_1:49981918-49981937 None:intergenic 45.0%
AAAAGAGGGAGACAATGCAG+AGG - chr5_1:49981919-49981938 None:intergenic 45.0%
! AGAGTGGCATGGGTTTTCCA+TGG - chr5_1:49980601-49980620 None:intergenic 50.0%
CGCATCAAGCGATAGATGCA+AGG - chr5_1:49980665-49980684 None:intergenic 50.0%
!! ACATGTGGTGCCACACTCAT+TGG - chr5_1:49980794-49980813 None:intergenic 50.0%
! GGTTGATGTTGGAGGAGGTA+CGG + chr5_1:49981048-49981067 Msa0734980:CDS 50.0%
! GTTGATGTTGGAGGAGGTAC+GGG + chr5_1:49981049-49981068 Msa0734980:CDS 50.0%
! TTGATGTTGGAGGAGGTACG+GGG + chr5_1:49981050-49981069 Msa0734980:CDS 50.0%
TCTACCGTGGATGAGGAAGA+AGG - chr5_1:49981859-49981878 None:intergenic 50.0%
TTCTTCCTCATCCACGGTAG+AGG + chr5_1:49981858-49981877 Msa0734980:three_prime_UTR 50.0%
! AGAGTGGCATGGGTTTTCCA+TGG - chr5_1:49980601-49980620 None:intergenic 50.0%
CGCATCAAGCGATAGATGCA+AGG - chr5_1:49980665-49980684 None:intergenic 50.0%
!! ACATGTGGTGCCACACTCAT+TGG - chr5_1:49980794-49980813 None:intergenic 50.0%
! GGTTGATGTTGGAGGAGGTA+CGG + chr5_1:49981048-49981067 Msa0734980:CDS 50.0%
! GTTGATGTTGGAGGAGGTAC+GGG + chr5_1:49981049-49981068 Msa0734980:CDS 50.0%
! TTGATGTTGGAGGAGGTACG+GGG + chr5_1:49981050-49981069 Msa0734980:CDS 50.0%
TCTACCGTGGATGAGGAAGA+AGG - chr5_1:49981859-49981878 None:intergenic 50.0%
TTCTTCCTCATCCACGGTAG+AGG + chr5_1:49981858-49981877 Msa0734980:three_prime_UTR 50.0%
AGTGTGGCACCACATGTGCA+CGG + chr5_1:49980797-49980816 Msa0734980:CDS 55.0%
CTGAGTATCCCGTGCACATG+TGG - chr5_1:49980809-49980828 None:intergenic 55.0%
TCACTCCTCTACCGTGGATG+AGG - chr5_1:49981866-49981885 None:intergenic 55.0%
CCACAATCACTCCTCTACCG+TGG - chr5_1:49981872-49981891 None:intergenic 55.0%
CCACGGTAGAGGAGTGATTG+TGG + chr5_1:49981869-49981888 Msa0734980:three_prime_UTR 55.0%
AGGGAGACAATGCAGAGGGA+TGG - chr5_1:49981914-49981933 None:intergenic 55.0%
AGTGTGGCACCACATGTGCA+CGG + chr5_1:49980797-49980816 Msa0734980:CDS 55.0%
CTGAGTATCCCGTGCACATG+TGG - chr5_1:49980809-49980828 None:intergenic 55.0%
TCACTCCTCTACCGTGGATG+AGG - chr5_1:49981866-49981885 None:intergenic 55.0%
CCACAATCACTCCTCTACCG+TGG - chr5_1:49981872-49981891 None:intergenic 55.0%
CCACGGTAGAGGAGTGATTG+TGG + chr5_1:49981869-49981888 Msa0734980:three_prime_UTR 55.0%
AGGGAGACAATGCAGAGGGA+TGG - chr5_1:49981914-49981933 None:intergenic 55.0%
GTGTGGCACCACATGTGCAC+GGG + chr5_1:49980798-49980817 Msa0734980:CDS 60.0%
GTGTGGCACCACATGTGCAC+GGG + chr5_1:49980798-49980817 Msa0734980:CDS 60.0%
! TGGAGGAGGTACGGGGACCA+TGG + chr5_1:49981057-49981076 Msa0734980:CDS 65.0%
! TGGAGGAGGTACGGGGACCA+TGG + chr5_1:49981057-49981076 Msa0734980:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 49980338 49982224 49980338 ID=Msa0734980;Name=Msa0734980
chr5_1 mRNA 49980338 49982224 49980338 ID=Msa0734980-mRNA-1;Parent=Msa0734980;Name=Msa0734980-mRNA-1;_AED=0.05;_eAED=0.05;_QI=120|1|1|1|1|1|2|456|358
chr5_1 exon 49980338 49981231 49980338 ID=Msa0734980-mRNA-1:exon:14092;Parent=Msa0734980-mRNA-1
chr5_1 exon 49981466 49982224 49981466 ID=Msa0734980-mRNA-1:exon:14093;Parent=Msa0734980-mRNA-1
chr5_1 five_prime_UTR 49980338 49980457 49980338 ID=Msa0734980-mRNA-1:five_prime_utr;Parent=Msa0734980-mRNA-1
chr5_1 CDS 49980458 49981231 49980458 ID=Msa0734980-mRNA-1:cds;Parent=Msa0734980-mRNA-1
chr5_1 CDS 49981466 49981768 49981466 ID=Msa0734980-mRNA-1:cds;Parent=Msa0734980-mRNA-1
chr5_1 three_prime_UTR 49981769 49982224 49981769 ID=Msa0734980-mRNA-1:three_prime_utr;Parent=Msa0734980-mRNA-1
Gene Sequence

>Msa0734980

ATGGAATCCCAACATGGAGATAATGTTGCTTCCAATTTGCTCAAAGCTCAAAGCCACTTATGGAATCACATTTTCAACTTCATAAATTCAATGTCACTTAAATGTGTAGTTGACTTAGGCATACCAGATATCATACACAACCATGGAAAACCCATGCCACTCTCAAAACTCATTTCTTCACTACCAATCCACCCTTCAAAAAAGCCTTGCATCTATCGCTTGATGCGAATCATGACTTATTCCGGCTTCTTCTCTCAACAAAATATTACTGAGAATGAGCTAGAGATTGAGTACATGTTAACTGATGTATCTCTATTACTACTTAAGAACAGTCCAATGAGTGTGGCACCACATGTGCACGGGATACTCAGTCCAGATATGATAGATCCATGGCATCAATTCTCTGCTTGGTTAAAAAATGATGATATTACAGCATTTGAAACAACACATGGGATGTCGTTTTGGGATTATCTTGCTCGTGACTCCAAATTTAACAACTCATTTAACGAATCAATGGCAAAAGATACTCGATTAGTTTCCGATTTGTTGGTTGAGAAGTGCAAGGGAGTGTTCCATGAAGTTGAGTCATTGGTTGATGTTGGAGGAGGTACGGGGACCATGGCAAAAACTCTTGCCAAATCATTCCCACAAATGGAATGCATTGTGTTTGATCTCCCACATGTTGTTGATGGTTTGCAAGGAAGTGAAAACTTAAACTATGTTGGTGGAGACATGTTTAAAGAAATTCCGCCAACAGATGCAATTTTGTTGAAGTCGATATTGCATGATTGGAATGACGAGGAATGTGTAAAGATATTAAAGAATTGTAAGGATGCAATATCAAAGAAAGGTAAAGGGAAGGTGGTTATCATTGACACGGTGTTAGACAAAGAGAATGGAAACATTAATGAATCAGTTGAAACACAACTCTTCTATGACATGTTGATGATGGTAGTATTCGCAGGAAAAGAGAGAAACGAGAAAGAATGGATTAAGTTGATTTCCTTGGCTGGTTTTAGTGACTACAAGATTACTCCAATTTTAGGATCAAGGTCTATGATTGAGATCTATCCATGA
Protein sequence

>Msa0734980

MESQHGDNVASNLLKAQSHLWNHIFNFINSMSLKCVVDLGIPDIIHNHGKPMPLSKLISSLPIHPSKKPCIYRLMRIMTYSGFFSQQNITENELEIEYMLTDVSLLLLKNSPMSVAPHVHGILSPDMIDPWHQFSAWLKNDDITAFETTHGMSFWDYLARDSKFNNSFNESMAKDTRLVSDLLVEKCKGVFHEVESLVDVGGGTGTMAKTLAKSFPQMECIVFDLPHVVDGLQGSENLNYVGGDMFKEIPPTDAILLKSILHDWNDEECVKILKNCKDAISKKGKGKVVIIDTVLDKENGNINESVETQLFYDMLMMVVFAGKERNEKEWIKLISLAGFSDYKITPILGSRSMIEIYP*