Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777340 | XP_003616019.1 | 93.333 | 150 | 2 | 1 | 1 | 142 | 1 | 150 | 2.65e-93 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777340 | sp|Q9SCU5|WNK5_ARATH | 69.403 | 134 | 33 | 1 | 17 | 142 | 15 | 148 | 9.22e-63 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777340 | G7K0S2 | 93.333 | 150 | 2 | 1 | 1 | 142 | 1 | 150 | 1.27e-93 | 291 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0100090 | Msa0777340 | 0.800349 | 1.502879e-48 | -8.615850e-47 |
| Msa0715410 | Msa0777340 | 0.807487 | 4.934266e-50 | -8.615850e-47 |
| Msa0735400 | Msa0777340 | 0.808426 | 3.116060e-50 | -8.615850e-47 |
| Msa0777340 | Msa0780280 | 0.806197 | 9.244593e-50 | -8.615850e-47 |
| Msa0777340 | Msa0821800 | 0.806436 | 8.235598e-50 | -8.615850e-47 |
| Msa0777340 | Msa0861830 | 0.809707 | 1.656296e-50 | -8.615850e-47 |
| Msa0393200 | Msa0777340 | 0.804151 | 2.479203e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777340 | MtrunA17_Chr5g0432541 | 93.333 | 150 | 2 | 1 | 1 | 142 | 1 | 150 | 2.44e-97 | 291 |
| Msa0777340 | MtrunA17_Chr6g0455931 | 66.887 | 151 | 39 | 3 | 2 | 142 | 3 | 152 | 3.56e-67 | 213 |
| Msa0777340 | MtrunA17_Chr7g0244601 | 67.910 | 134 | 35 | 1 | 17 | 142 | 18 | 151 | 2.06e-60 | 196 |
| Msa0777340 | MtrunA17_Chr4g0013051 | 65.672 | 134 | 38 | 1 | 17 | 142 | 14 | 147 | 7.89e-60 | 194 |
| Msa0777340 | MtrunA17_Chr1g0205471 | 60.870 | 138 | 46 | 1 | 13 | 142 | 10 | 147 | 4.99e-57 | 188 |
| Msa0777340 | MtrunA17_Chr7g0273851 | 60.870 | 138 | 46 | 1 | 13 | 142 | 10 | 147 | 7.82e-57 | 188 |
| Msa0777340 | MtrunA17_Chr1g0190951 | 60.432 | 139 | 47 | 1 | 12 | 142 | 9 | 147 | 1.38e-56 | 187 |
| Msa0777340 | MtrunA17_Chr3g0116811 | 58.209 | 134 | 48 | 1 | 17 | 142 | 16 | 149 | 5.23e-54 | 178 |
| Msa0777340 | MtrunA17_Chr3g0129771 | 61.654 | 133 | 43 | 1 | 18 | 142 | 24 | 156 | 2.15e-53 | 177 |
| Msa0777340 | MtrunA17_Chr8g0346511 | 55.333 | 150 | 56 | 3 | 1 | 142 | 15 | 161 | 4.85e-52 | 174 |
| Msa0777340 | MtrunA17_Chr3g0119911 | 55.639 | 133 | 51 | 1 | 18 | 142 | 11 | 143 | 3.97e-50 | 168 |
| Msa0777340 | MtrunA17_Chr8g0384001 | 54.887 | 133 | 52 | 1 | 18 | 142 | 19 | 151 | 1.94e-47 | 161 |
| Msa0777340 | MtrunA17_Chr7g0225201 | 52.899 | 138 | 57 | 1 | 12 | 141 | 12 | 149 | 2.07e-46 | 152 |
| Msa0777340 | MtrunA17_Chr3g0101111 | 51.449 | 138 | 59 | 1 | 12 | 141 | 11 | 148 | 5.63e-45 | 148 |
| Msa0777340 | MtrunA17_Chr3g0101091 | 51.449 | 138 | 59 | 1 | 12 | 141 | 11 | 148 | 7.06e-45 | 148 |
| Msa0777340 | MtrunA17_Chr3g0101081 | 51.449 | 138 | 59 | 1 | 12 | 141 | 11 | 148 | 7.06e-45 | 148 |
| Msa0777340 | MtrunA17_Chr5g0445271 | 49.275 | 138 | 62 | 1 | 12 | 141 | 12 | 149 | 2.87e-44 | 147 |
| Msa0777340 | MtrunA17_Chr3g0132681 | 51.079 | 139 | 59 | 2 | 12 | 141 | 11 | 149 | 1.13e-42 | 142 |
| Msa0777340 | MtrunA17_Chr5g0447731 | 48.872 | 133 | 60 | 1 | 17 | 141 | 13 | 145 | 5.09e-41 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777340 | AT3G51630.1 | 69.403 | 134 | 33 | 1 | 17 | 142 | 15 | 148 | 9.37e-64 | 203 |
| Msa0777340 | AT3G51630.2 | 69.403 | 134 | 33 | 1 | 17 | 142 | 15 | 148 | 9.37e-64 | 203 |
| Msa0777340 | AT5G58350.1 | 68.056 | 144 | 35 | 2 | 7 | 142 | 2 | 142 | 1.11e-63 | 204 |
| Msa0777340 | AT5G28080.2 | 63.433 | 134 | 41 | 1 | 17 | 142 | 15 | 148 | 3.33e-58 | 188 |
| Msa0777340 | AT3G04910.1 | 62.687 | 134 | 42 | 1 | 17 | 142 | 14 | 147 | 5.40e-56 | 186 |
| Msa0777340 | AT3G48260.1 | 58.451 | 142 | 51 | 1 | 9 | 142 | 4 | 145 | 5.25e-54 | 177 |
| Msa0777340 | AT3G18750.6 | 59.398 | 133 | 46 | 1 | 18 | 142 | 19 | 151 | 1.31e-51 | 171 |
| Msa0777340 | AT3G18750.2 | 59.398 | 133 | 46 | 1 | 18 | 142 | 19 | 151 | 1.31e-51 | 171 |
| Msa0777340 | AT3G18750.1 | 59.398 | 133 | 46 | 1 | 18 | 142 | 19 | 151 | 3.65e-51 | 171 |
| Msa0777340 | AT3G18750.3 | 59.398 | 133 | 46 | 1 | 18 | 142 | 19 | 151 | 3.65e-51 | 171 |
| Msa0777340 | AT3G18750.5 | 59.398 | 133 | 46 | 1 | 18 | 142 | 19 | 151 | 3.65e-51 | 171 |
| Msa0777340 | AT1G49160.2 | 57.895 | 133 | 48 | 1 | 18 | 142 | 19 | 151 | 9.94e-51 | 169 |
| Msa0777340 | AT3G22420.1 | 51.748 | 143 | 60 | 2 | 9 | 142 | 5 | 147 | 4.55e-49 | 165 |
| Msa0777340 | AT3G22420.4 | 49.673 | 153 | 64 | 3 | 3 | 142 | 66 | 218 | 5.18e-49 | 166 |
| Msa0777340 | AT3G22420.3 | 49.673 | 153 | 64 | 3 | 3 | 142 | 66 | 218 | 5.87e-49 | 166 |
| Msa0777340 | AT3G22420.6 | 51.748 | 143 | 60 | 2 | 9 | 142 | 5 | 147 | 7.08e-49 | 165 |
| Msa0777340 | AT3G22420.5 | 51.748 | 143 | 60 | 2 | 9 | 142 | 5 | 147 | 7.46e-49 | 165 |
| Msa0777340 | AT3G22420.2 | 51.748 | 143 | 60 | 2 | 9 | 142 | 5 | 147 | 9.65e-49 | 165 |
| Msa0777340 | AT5G41990.1 | 55.072 | 138 | 54 | 1 | 13 | 142 | 15 | 152 | 2.85e-48 | 163 |
| Msa0777340 | AT1G64630.1 | 55.072 | 138 | 54 | 1 | 13 | 142 | 2 | 139 | 4.83e-48 | 162 |
| Msa0777340 | AT3G18750.4 | 58.537 | 123 | 43 | 1 | 28 | 142 | 11 | 133 | 2.67e-46 | 157 |
| Msa0777340 | AT5G55560.1 | 50.355 | 141 | 62 | 1 | 9 | 141 | 13 | 153 | 3.67e-44 | 147 |
| Msa0777340 | AT1G49160.3 | 43.333 | 180 | 47 | 2 | 18 | 142 | 19 | 198 | 5.20e-43 | 148 |
| Msa0777340 | AT1G49160.5 | 43.333 | 180 | 47 | 2 | 18 | 142 | 19 | 198 | 1.28e-42 | 148 |
| Msa0777340 | AT3G04910.2 | 57.522 | 113 | 40 | 1 | 38 | 142 | 12 | 124 | 2.05e-41 | 145 |
| Msa0777340 | AT1G49160.1 | 56.881 | 109 | 39 | 1 | 42 | 142 | 25 | 133 | 3.32e-39 | 138 |
| Msa0777340 | AT5G28080.8 | 47.015 | 134 | 26 | 2 | 17 | 142 | 15 | 111 | 1.92e-34 | 124 |
| Msa0777340 | AT5G28080.4 | 59.677 | 62 | 17 | 1 | 89 | 142 | 1 | 62 | 5.53e-20 | 84.7 |
| Msa0777340 | AT5G28080.3 | 59.677 | 62 | 17 | 1 | 89 | 142 | 1 | 62 | 5.53e-20 | 84.7 |
| Msa0777340 | AT5G28080.5 | 59.677 | 62 | 17 | 1 | 89 | 142 | 1 | 62 | 5.53e-20 | 84.7 |
| Msa0777340 | AT5G28080.6 | 59.677 | 62 | 17 | 1 | 89 | 142 | 1 | 62 | 5.53e-20 | 84.7 |
| Msa0777340 | AT5G28080.7 | 59.677 | 62 | 17 | 1 | 89 | 142 | 1 | 62 | 5.53e-20 | 84.7 |
| Msa0777340 | AT3G48260.2 | 54.167 | 48 | 14 | 1 | 103 | 142 | 3 | 50 | 7.34e-11 | 58.9 |
Find 43 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTAGTTTGGAGATGTTCT+TGG | 0.334635 | 5_2:+56242677 | Msa0777340:intron |
| TTGGAGATGTTCTTGGAAAA+GGG | 0.391885 | 5_2:+56242684 | Msa0777340:CDS |
| ATAGAAGATTATTGTTAACT+TGG | 0.406966 | 5_2:+56242125 | Msa0777340:five_prime_UTR |
| TTTGGAGATGTTCTTGGAAA+AGG | 0.410735 | 5_2:+56242683 | Msa0777340:CDS |
| CAAGGGCTAGTTTATTTACA+TGG | 0.427944 | 5_2:+56243187 | Msa0777340:CDS |
| TTTACAAGCAATAAAGAGTT+GGG | 0.428509 | 5_2:+56243150 | Msa0777340:CDS |
| AGAGAACATGGAGGAATTCA+AGG | 0.433143 | 5_2:+56242186 | Msa0777340:CDS |
| TCATGCGATTCTACACATCT+TGG | 0.453238 | 5_2:+56242861 | Msa0777340:CDS |
| CTTATTATAAGCACATAACT+TGG | 0.466566 | 5_2:+56241828 | Msa0777340:five_prime_UTR |
| TGATGAGGTCCTTGGAATAG+AGG | 0.477115 | 5_2:+56242733 | Msa0777340:CDS |
| TTATATGAAATTATTGAAGA+AGG | 0.477443 | 5_2:-56241940 | None:intergenic |
| GTTTACAAGCAATAAAGAGT+TGG | 0.484722 | 5_2:+56243149 | Msa0777340:CDS |
| AAAGCAATTGATGAGGTCCT+TGG | 0.488731 | 5_2:+56242725 | Msa0777340:CDS |
| TTATAAGCACATAACTTGGT+TGG | 0.491282 | 5_2:+56241832 | Msa0777340:five_prime_UTR |
| CGATTTGCAGCGCCTTTACT+CGG | 0.491821 | 5_2:+56242802 | Msa0777340:CDS |
| TAAAGGCGCTGCAAATCGTC+TGG | 0.503614 | 5_2:-56242797 | None:intergenic |
| TGTAGAATCGCATGATCGAC+CGG | 0.507532 | 5_2:-56242853 | None:intergenic |
| CAAGGAAGAGAATCTTTATG+TGG | 0.517454 | 5_2:+56242204 | Msa0777340:CDS |
| ACTGATCCAACTGGTCGCTA+TGG | 0.521244 | 5_2:+56242229 | Msa0777340:CDS |
| GTACCTCGTTGAGTCTGACT+TGG | 0.527156 | 5_2:-56242766 | None:intergenic |
| TTACTCGCTTATATTTCCTC+CGG | 0.533153 | 5_2:-56243126 | None:intergenic |
| ACCCTACCATAGCGACCAGT+TGG | 0.534664 | 5_2:-56242235 | None:intergenic |
| ACCGGTGCTTGAGTGTGCTT+AGG | 0.539236 | 5_2:-56242835 | None:intergenic |
| TGGGCGCGGCAAATCTTACA+AGG | 0.541962 | 5_2:+56243169 | Msa0777340:CDS |
| GGAGATGAACCTCCGAGTAA+AGG | 0.544456 | 5_2:-56242814 | None:intergenic |
| TATGGATTACAGGTGGATCA+TGG | 0.548652 | 5_2:-56243210 | None:intergenic |
| TGGAGATGTTCTTGGAAAAG+GGG | 0.559106 | 5_2:+56242685 | Msa0777340:CDS |
| ATCCAACTGGTCGCTATGGT+AGG | 0.561180 | 5_2:+56242233 | Msa0777340:CDS |
| TCCTTGGAATAGAGGTAGCA+TGG | 0.561516 | 5_2:+56242741 | Msa0777340:CDS |
| TCTTAATGCGACCGAGATTG+AGG | 0.564550 | 5_2:+56242049 | Msa0777340:five_prime_UTR |
| TCCTAAGCACACTCAAGCAC+CGG | 0.573140 | 5_2:+56242834 | Msa0777340:CDS |
| AGTTGATGCAGCCTCAATCT+CGG | 0.573412 | 5_2:-56242060 | None:intergenic |
| TCCAACTGGTCGCTATGGTA+GGG | 0.573989 | 5_2:+56242234 | Msa0777340:CDS |
| TATGTGGAAACTGATCCAAC+TGG | 0.588601 | 5_2:+56242220 | Msa0777340:CDS |
| TATTGAAGAAGGTAGAGTCA+TGG | 0.596813 | 5_2:-56241929 | None:intergenic |
| TCCATGCTACCTCTATTCCA+AGG | 0.626468 | 5_2:-56242742 | None:intergenic |
| AAGCAATAAAGAGTTGGGCG+CGG | 0.643559 | 5_2:+56243155 | Msa0777340:CDS |
| TTTGCAGCGCCTTTACTCGG+AGG | 0.654127 | 5_2:+56242805 | Msa0777340:CDS |
| CGAACACGTCCAGGTACCGG+AGG | 0.688050 | 5_2:+56243110 | Msa0777340:intron |
| AGTGTACAAAGCAATTGATG+AGG | 0.697283 | 5_2:+56242718 | Msa0777340:CDS |
| TTGTAAGAGAGAGAACATGG+AGG | 0.701184 | 5_2:+56242177 | Msa0777340:CDS |
| GGGCGCGGCAAATCTTACAA+GGG | 0.725844 | 5_2:+56243170 | Msa0777340:CDS |
| GAACCAAGTCAGACTCAACG+AGG | 0.753629 | 5_2:+56242763 | Msa0777340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATGAAATTATTGAAGA+AGG | - | chr5_2:56241943-56241962 | None:intergenic | 15.0% |
| !! | TTATATGAAATTATTGAAGA+AGG | - | chr5_2:56241943-56241962 | None:intergenic | 15.0% |
| !! | ATAGAAGATTATTGTTAACT+TGG | + | chr5_2:56242125-56242144 | Msa0777340:five_prime_UTR | 20.0% |
| !!! | CAATTTGCTATATTGTTATT+AGG | + | chr5_2:56242436-56242455 | Msa0777340:intron | 20.0% |
| !!! | AAATATTTCACGTTTTCATA+AGG | - | chr5_2:56242990-56243009 | None:intergenic | 20.0% |
| !! | ATAGAAGATTATTGTTAACT+TGG | + | chr5_2:56242125-56242144 | Msa0777340:five_prime_UTR | 20.0% |
| !!! | CAATTTGCTATATTGTTATT+AGG | + | chr5_2:56242436-56242455 | Msa0777340:intron | 20.0% |
| !!! | AAATATTTCACGTTTTCATA+AGG | - | chr5_2:56242990-56243009 | None:intergenic | 20.0% |
| ! | CTTATTATAAGCACATAACT+TGG | + | chr5_2:56241828-56241847 | Msa0777340:five_prime_UTR | 25.0% |
| ! | AAAGAAACTGTCTCATATAA+CGG | + | chr5_2:56242618-56242637 | Msa0777340:intron | 25.0% |
| ! | TTTACAAGCAATAAAGAGTT+GGG | + | chr5_2:56243150-56243169 | Msa0777340:CDS | 25.0% |
| ! | CTTATTATAAGCACATAACT+TGG | + | chr5_2:56241828-56241847 | Msa0777340:five_prime_UTR | 25.0% |
| ! | AAAGAAACTGTCTCATATAA+CGG | + | chr5_2:56242618-56242637 | Msa0777340:intron | 25.0% |
| ! | TTTACAAGCAATAAAGAGTT+GGG | + | chr5_2:56243150-56243169 | Msa0777340:CDS | 25.0% |
| TTATAAGCACATAACTTGGT+TGG | + | chr5_2:56241832-56241851 | Msa0777340:five_prime_UTR | 30.0% | |
| ! | AGATACTAGAAATTTTGCAG+TGG | - | chr5_2:56242012-56242031 | None:intergenic | 30.0% |
| !! | TCTTTTCATTTTTGTGCACA+TGG | + | chr5_2:56242390-56242409 | Msa0777340:intron | 30.0% |
| !! | CAATCATGGTTCTAAACAAA+CGG | - | chr5_2:56242598-56242617 | None:intergenic | 30.0% |
| ! | TTCTGTGTGATTGATTAGTT+TGG | + | chr5_2:56242665-56242684 | Msa0777340:intron | 30.0% |
| GTTTACAAGCAATAAAGAGT+TGG | + | chr5_2:56243149-56243168 | Msa0777340:CDS | 30.0% | |
| TATTTAGAAACGAAAGCAAC+AGG | - | chr5_2:56241754-56241773 | None:intergenic | 30.0% | |
| TTATAAGCACATAACTTGGT+TGG | + | chr5_2:56241832-56241851 | Msa0777340:five_prime_UTR | 30.0% | |
| ! | AGATACTAGAAATTTTGCAG+TGG | - | chr5_2:56242012-56242031 | None:intergenic | 30.0% |
| !! | TCTTTTCATTTTTGTGCACA+TGG | + | chr5_2:56242390-56242409 | Msa0777340:intron | 30.0% |
| !! | CAATCATGGTTCTAAACAAA+CGG | - | chr5_2:56242598-56242617 | None:intergenic | 30.0% |
| ! | TTCTGTGTGATTGATTAGTT+TGG | + | chr5_2:56242665-56242684 | Msa0777340:intron | 30.0% |
| GTTTACAAGCAATAAAGAGT+TGG | + | chr5_2:56243149-56243168 | Msa0777340:CDS | 30.0% | |
| TATTGAAGAAGGTAGAGTCA+TGG | - | chr5_2:56241932-56241951 | None:intergenic | 35.0% | |
| ! | GTTTTGTAAGAGAGAGAACA+TGG | + | chr5_2:56242174-56242193 | Msa0777340:CDS | 35.0% |
| CAAGGAAGAGAATCTTTATG+TGG | + | chr5_2:56242204-56242223 | Msa0777340:CDS | 35.0% | |
| TAATATCAAAGATCGCGACA+CGG | - | chr5_2:56242487-56242506 | None:intergenic | 35.0% | |
| ACGGTATGTAATCAGTATCA+CGG | - | chr5_2:56242579-56242598 | None:intergenic | 35.0% | |
| GAGACAGTTTCTTTCAATCA+TGG | - | chr5_2:56242612-56242631 | None:intergenic | 35.0% | |
| !! | GATTAGTTTGGAGATGTTCT+TGG | + | chr5_2:56242677-56242696 | Msa0777340:intron | 35.0% |
| TTTGGAGATGTTCTTGGAAA+AGG | + | chr5_2:56242683-56242702 | Msa0777340:CDS | 35.0% | |
| TTGGAGATGTTCTTGGAAAA+GGG | + | chr5_2:56242684-56242703 | Msa0777340:CDS | 35.0% | |
| AGTGTACAAAGCAATTGATG+AGG | + | chr5_2:56242718-56242737 | Msa0777340:CDS | 35.0% | |
| GTTACAGAAATGTTCACATC+AGG | + | chr5_2:56242914-56242933 | Msa0777340:intron | 35.0% | |
| TTACTCGCTTATATTTCCTC+CGG | - | chr5_2:56243129-56243148 | None:intergenic | 35.0% | |
| !! | CAAGGGCTAGTTTATTTACA+TGG | + | chr5_2:56243187-56243206 | Msa0777340:CDS | 35.0% |
| TATTGAAGAAGGTAGAGTCA+TGG | - | chr5_2:56241932-56241951 | None:intergenic | 35.0% | |
| ! | GTTTTGTAAGAGAGAGAACA+TGG | + | chr5_2:56242174-56242193 | Msa0777340:CDS | 35.0% |
| CAAGGAAGAGAATCTTTATG+TGG | + | chr5_2:56242204-56242223 | Msa0777340:CDS | 35.0% | |
| TAATATCAAAGATCGCGACA+CGG | - | chr5_2:56242487-56242506 | None:intergenic | 35.0% | |
| ACGGTATGTAATCAGTATCA+CGG | - | chr5_2:56242579-56242598 | None:intergenic | 35.0% | |
| GAGACAGTTTCTTTCAATCA+TGG | - | chr5_2:56242612-56242631 | None:intergenic | 35.0% | |
| !! | GATTAGTTTGGAGATGTTCT+TGG | + | chr5_2:56242677-56242696 | Msa0777340:intron | 35.0% |
| TTTGGAGATGTTCTTGGAAA+AGG | + | chr5_2:56242683-56242702 | Msa0777340:CDS | 35.0% | |
| TTGGAGATGTTCTTGGAAAA+GGG | + | chr5_2:56242684-56242703 | Msa0777340:CDS | 35.0% | |
| AGTGTACAAAGCAATTGATG+AGG | + | chr5_2:56242718-56242737 | Msa0777340:CDS | 35.0% | |
| GTTACAGAAATGTTCACATC+AGG | + | chr5_2:56242914-56242933 | Msa0777340:intron | 35.0% | |
| TTACTCGCTTATATTTCCTC+CGG | - | chr5_2:56243129-56243148 | None:intergenic | 35.0% | |
| !! | CAAGGGCTAGTTTATTTACA+TGG | + | chr5_2:56243187-56243206 | Msa0777340:CDS | 35.0% |
| TTGTAAGAGAGAGAACATGG+AGG | + | chr5_2:56242177-56242196 | Msa0777340:CDS | 40.0% | |
| AGAGAACATGGAGGAATTCA+AGG | + | chr5_2:56242186-56242205 | Msa0777340:CDS | 40.0% | |
| TATGTGGAAACTGATCCAAC+TGG | + | chr5_2:56242220-56242239 | Msa0777340:CDS | 40.0% | |
| ACACATGTCACAAGAAACAG+AGG | - | chr5_2:56242295-56242314 | None:intergenic | 40.0% | |
| TAATGTGACCGTCTTAACAG+CGG | + | chr5_2:56242528-56242547 | Msa0777340:intron | 40.0% | |
| TGGAGATGTTCTTGGAAAAG+GGG | + | chr5_2:56242685-56242704 | Msa0777340:CDS | 40.0% | |
| AAAGCAATTGATGAGGTCCT+TGG | + | chr5_2:56242725-56242744 | Msa0777340:CDS | 40.0% | |
| TCATGCGATTCTACACATCT+TGG | + | chr5_2:56242861-56242880 | Msa0777340:CDS | 40.0% | |
| TTGTAAGAGAGAGAACATGG+AGG | + | chr5_2:56242177-56242196 | Msa0777340:CDS | 40.0% | |
| AGAGAACATGGAGGAATTCA+AGG | + | chr5_2:56242186-56242205 | Msa0777340:CDS | 40.0% | |
| TATGTGGAAACTGATCCAAC+TGG | + | chr5_2:56242220-56242239 | Msa0777340:CDS | 40.0% | |
| ACACATGTCACAAGAAACAG+AGG | - | chr5_2:56242295-56242314 | None:intergenic | 40.0% | |
| TAATGTGACCGTCTTAACAG+CGG | + | chr5_2:56242528-56242547 | Msa0777340:intron | 40.0% | |
| TGGAGATGTTCTTGGAAAAG+GGG | + | chr5_2:56242685-56242704 | Msa0777340:CDS | 40.0% | |
| AAAGCAATTGATGAGGTCCT+TGG | + | chr5_2:56242725-56242744 | Msa0777340:CDS | 40.0% | |
| TCATGCGATTCTACACATCT+TGG | + | chr5_2:56242861-56242880 | Msa0777340:CDS | 40.0% | |
| TCTTAATGCGACCGAGATTG+AGG | + | chr5_2:56242049-56242068 | Msa0777340:five_prime_UTR | 45.0% | |
| ! | AGTTGATGCAGCCTCAATCT+CGG | - | chr5_2:56242063-56242082 | None:intergenic | 45.0% |
| TGATGAGGTCCTTGGAATAG+AGG | + | chr5_2:56242733-56242752 | Msa0777340:CDS | 45.0% | |
| TCCTTGGAATAGAGGTAGCA+TGG | + | chr5_2:56242741-56242760 | Msa0777340:CDS | 45.0% | |
| TCCATGCTACCTCTATTCCA+AGG | - | chr5_2:56242745-56242764 | None:intergenic | 45.0% | |
| TGTAGAATCGCATGATCGAC+CGG | - | chr5_2:56242856-56242875 | None:intergenic | 45.0% | |
| ! | GACAATTTTCGAACACGTCC+AGG | + | chr5_2:56243101-56243120 | Msa0777340:intron | 45.0% |
| CTTATATTTCCTCCGGTACC+TGG | - | chr5_2:56243122-56243141 | None:intergenic | 45.0% | |
| AAGCAATAAAGAGTTGGGCG+CGG | + | chr5_2:56243155-56243174 | Msa0777340:CDS | 45.0% | |
| TCTTAATGCGACCGAGATTG+AGG | + | chr5_2:56242049-56242068 | Msa0777340:five_prime_UTR | 45.0% | |
| ! | AGTTGATGCAGCCTCAATCT+CGG | - | chr5_2:56242063-56242082 | None:intergenic | 45.0% |
| TGATGAGGTCCTTGGAATAG+AGG | + | chr5_2:56242733-56242752 | Msa0777340:CDS | 45.0% | |
| TCCTTGGAATAGAGGTAGCA+TGG | + | chr5_2:56242741-56242760 | Msa0777340:CDS | 45.0% | |
| TCCATGCTACCTCTATTCCA+AGG | - | chr5_2:56242745-56242764 | None:intergenic | 45.0% | |
| TGTAGAATCGCATGATCGAC+CGG | - | chr5_2:56242856-56242875 | None:intergenic | 45.0% | |
| ! | GACAATTTTCGAACACGTCC+AGG | + | chr5_2:56243101-56243120 | Msa0777340:intron | 45.0% |
| CTTATATTTCCTCCGGTACC+TGG | - | chr5_2:56243122-56243141 | None:intergenic | 45.0% | |
| AAGCAATAAAGAGTTGGGCG+CGG | + | chr5_2:56243155-56243174 | Msa0777340:CDS | 45.0% | |
| !!! | TTATTAAGATAATTTTAAAT+TGG | + | chr5_2:56242460-56242479 | Msa0777340:intron | 5.0% |
| !!! | TTATTAAGATAATTTTAAAT+TGG | + | chr5_2:56242460-56242479 | Msa0777340:intron | 5.0% |
| ACTGATCCAACTGGTCGCTA+TGG | + | chr5_2:56242229-56242248 | Msa0777340:CDS | 50.0% | |
| ATCCAACTGGTCGCTATGGT+AGG | + | chr5_2:56242233-56242252 | Msa0777340:CDS | 50.0% | |
| TCCAACTGGTCGCTATGGTA+GGG | + | chr5_2:56242234-56242253 | Msa0777340:CDS | 50.0% | |
| CTCTGCAACCGCTGTTAAGA+CGG | - | chr5_2:56242539-56242558 | None:intergenic | 50.0% | |
| GAACCAAGTCAGACTCAACG+AGG | + | chr5_2:56242763-56242782 | Msa0777340:CDS | 50.0% | |
| GTACCTCGTTGAGTCTGACT+TGG | - | chr5_2:56242769-56242788 | None:intergenic | 50.0% | |
| !! | TAAAGGCGCTGCAAATCGTC+TGG | - | chr5_2:56242800-56242819 | None:intergenic | 50.0% |
| CGATTTGCAGCGCCTTTACT+CGG | + | chr5_2:56242802-56242821 | Msa0777340:CDS | 50.0% | |
| GGAGATGAACCTCCGAGTAA+AGG | - | chr5_2:56242817-56242836 | None:intergenic | 50.0% | |
| TCCTAAGCACACTCAAGCAC+CGG | + | chr5_2:56242834-56242853 | Msa0777340:CDS | 50.0% | |
| TTTCGAACACGTCCAGGTAC+CGG | + | chr5_2:56243107-56243126 | Msa0777340:intron | 50.0% | |
| ACTGATCCAACTGGTCGCTA+TGG | + | chr5_2:56242229-56242248 | Msa0777340:CDS | 50.0% | |
| ATCCAACTGGTCGCTATGGT+AGG | + | chr5_2:56242233-56242252 | Msa0777340:CDS | 50.0% | |
| TCCAACTGGTCGCTATGGTA+GGG | + | chr5_2:56242234-56242253 | Msa0777340:CDS | 50.0% | |
| CTCTGCAACCGCTGTTAAGA+CGG | - | chr5_2:56242539-56242558 | None:intergenic | 50.0% | |
| GAACCAAGTCAGACTCAACG+AGG | + | chr5_2:56242763-56242782 | Msa0777340:CDS | 50.0% | |
| GTACCTCGTTGAGTCTGACT+TGG | - | chr5_2:56242769-56242788 | None:intergenic | 50.0% | |
| !! | TAAAGGCGCTGCAAATCGTC+TGG | - | chr5_2:56242800-56242819 | None:intergenic | 50.0% |
| CGATTTGCAGCGCCTTTACT+CGG | + | chr5_2:56242802-56242821 | Msa0777340:CDS | 50.0% | |
| GGAGATGAACCTCCGAGTAA+AGG | - | chr5_2:56242817-56242836 | None:intergenic | 50.0% | |
| TCCTAAGCACACTCAAGCAC+CGG | + | chr5_2:56242834-56242853 | Msa0777340:CDS | 50.0% | |
| TTTCGAACACGTCCAGGTAC+CGG | + | chr5_2:56243107-56243126 | Msa0777340:intron | 50.0% | |
| ACCCTACCATAGCGACCAGT+TGG | - | chr5_2:56242238-56242257 | None:intergenic | 55.0% | |
| TTTGCAGCGCCTTTACTCGG+AGG | + | chr5_2:56242805-56242824 | Msa0777340:CDS | 55.0% | |
| ACCGGTGCTTGAGTGTGCTT+AGG | - | chr5_2:56242838-56242857 | None:intergenic | 55.0% | |
| TGGGCGCGGCAAATCTTACA+AGG | + | chr5_2:56243169-56243188 | Msa0777340:CDS | 55.0% | |
| GGGCGCGGCAAATCTTACAA+GGG | + | chr5_2:56243170-56243189 | Msa0777340:CDS | 55.0% | |
| ACCCTACCATAGCGACCAGT+TGG | - | chr5_2:56242238-56242257 | None:intergenic | 55.0% | |
| TTTGCAGCGCCTTTACTCGG+AGG | + | chr5_2:56242805-56242824 | Msa0777340:CDS | 55.0% | |
| ACCGGTGCTTGAGTGTGCTT+AGG | - | chr5_2:56242838-56242857 | None:intergenic | 55.0% | |
| TGGGCGCGGCAAATCTTACA+AGG | + | chr5_2:56243169-56243188 | Msa0777340:CDS | 55.0% | |
| GGGCGCGGCAAATCTTACAA+GGG | + | chr5_2:56243170-56243189 | Msa0777340:CDS | 55.0% | |
| !! | CGAACACGTCCAGGTACCGG+AGG | + | chr5_2:56243110-56243129 | Msa0777340:intron | 65.0% |
| !! | CGAACACGTCCAGGTACCGG+AGG | + | chr5_2:56243110-56243129 | Msa0777340:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 56241754 | 56243222 | 56241754 | ID=Msa0777340;Name=Msa0777340 |
| chr5_2 | mRNA | 56241754 | 56243222 | 56241754 | ID=Msa0777340-mRNA-1;Parent=Msa0777340;Name=Msa0777340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=418|0.5|0.33|1|0.5|0.33|3|0|142 |
| chr5_2 | exon | 56241754 | 56242255 | 56241754 | ID=Msa0777340-mRNA-1:exon:16624;Parent=Msa0777340-mRNA-1 |
| chr5_2 | exon | 56242683 | 56242924 | 56242683 | ID=Msa0777340-mRNA-1:exon:16625;Parent=Msa0777340-mRNA-1 |
| chr5_2 | exon | 56243123 | 56243222 | 56243123 | ID=Msa0777340-mRNA-1:exon:16626;Parent=Msa0777340-mRNA-1 |
| chr5_2 | five_prime_UTR | 56241754 | 56242171 | 56241754 | ID=Msa0777340-mRNA-1:five_prime_utr;Parent=Msa0777340-mRNA-1 |
| chr5_2 | CDS | 56242172 | 56242255 | 56242172 | ID=Msa0777340-mRNA-1:cds;Parent=Msa0777340-mRNA-1 |
| chr5_2 | CDS | 56242683 | 56242924 | 56242683 | ID=Msa0777340-mRNA-1:cds;Parent=Msa0777340-mRNA-1 |
| chr5_2 | CDS | 56243123 | 56243222 | 56243123 | ID=Msa0777340-mRNA-1:cds;Parent=Msa0777340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
