AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0715410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715410 MtrunA17_Chr5g0402761 56.667 90 37 1 26 113 49 138 6.95e-21 84.7
Msa0715410 MtrunA17_Chr5g0402701 53.846 78 34 1 26 101 49 126 8.13e-20 83.2
Msa0715410 MtrunA17_Chr5g0402771 52.564 78 35 1 26 101 49 126 1.98e-16 73.6
Msa0715410 MtrunA17_Chr5g0402671 51.765 85 38 2 18 100 38 121 6.99e-16 72.0
Msa0715410 MtrunA17_Chr5g0402681 52.500 80 32 3 26 101 45 122 6.64e-13 63.5
Msa0715410 MtrunA17_Chr5g0402721 51.250 80 34 2 26 101 45 123 5.51e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 16 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATCTCTCTATCTCTTCTT+TGG 0.150819 5_1:+8473701 None:intergenic
TTGTTCAATTTGAGATTAAA+AGG 0.195544 5_1:-8473548 Msa0715410:CDS
TATAAAAGGAGTAATCTTTC+AGG 0.284411 5_1:+8470022 None:intergenic
GAAGCAAATTGAGAAGATTA+AGG 0.288036 5_1:-8473586 Msa0715410:CDS
TTATTACAGAATATTATAAA+AGG 0.297735 5_1:+8470008 None:intergenic
GAAAGGTTGCAATGATTCAT+TGG 0.329158 5_1:-8473730 Msa0715410:CDS
AATCTCTCTATCTCTTCTTT+GGG 0.351414 5_1:+8473702 None:intergenic
AAAGGTTGCAATGATTCATT+GGG 0.457038 5_1:-8473729 Msa0715410:CDS
TGTTCAATTTGAGATTAAAA+GGG 0.464809 5_1:-8473547 Msa0715410:CDS
TTTGCGATTGAATTGACTCT+AGG 0.479556 5_1:+8474977 None:intergenic
TGAGATTAAAAGGGATGTCA+TGG 0.522107 5_1:-8473538 Msa0715410:CDS
CTTAAGGTAGAAGAATTGAA+AGG 0.579410 5_1:-8473747 Msa0715410:intron
GAGAGATTAGAGACTCTCGT+AGG 0.640773 5_1:-8473687 Msa0715410:CDS
GATTAAAAGGGATGTCATGG+AGG 0.647456 5_1:-8473535 Msa0715410:intron
GATACAGAGGCAGACACACG+TGG 0.674332 5_1:-8475007 Msa0715410:CDS
GTATTACAAAGATGATACAG+AGG 0.723322 5_1:-8475020 Msa0715410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAATATTTATATTTTT+AGG - chr5_1:8470622-8470641 Msa0715410:intron 0.0%
!!! TTTTTATTTTTATTTTTGAC+GGG - chr5_1:8470157-8470176 Msa0715410:intron 10.0%
!!! TAGTTTGTTATATTTTTTTA+AGG + chr5_1:8470422-8470441 None:intergenic 10.0%
!!! TTTTTTATTTTATGTTTTGA+TGG + chr5_1:8470869-8470888 None:intergenic 10.0%
!! ATTCAATCTAATTAATTCAT+TGG + chr5_1:8470319-8470338 None:intergenic 15.0%
!! AATGAATTAATTAGATTGAA+TGG - chr5_1:8470318-8470337 Msa0715410:intron 15.0%
!! AAGGATAAATTAAAAGATAT+TGG + chr5_1:8470403-8470422 None:intergenic 15.0%
!! AATTGTTTAAGTGTATAATT+AGG + chr5_1:8470477-8470496 None:intergenic 15.0%
!!! AAGTAAAATATTATTAGTCT+TGG - chr5_1:8472148-8472167 Msa0715410:intron 15.0%
!! ATAGATATTTATTCTACTAT+GGG - chr5_1:8472440-8472459 Msa0715410:intron 15.0%
!! TTAAAAGATAACAATAAAGT+TGG - chr5_1:8473852-8473871 Msa0715410:intron 15.0%
!!! AATATTTAAAATCATAACCT+CGG + chr5_1:8474056-8474075 None:intergenic 15.0%
!!! AGGTTATGATTTTAAATATT+TGG - chr5_1:8474056-8474075 Msa0715410:intron 15.0%
!! AGAATTTAGAAAAGCAAAAT+CGG - chr5_1:8470096-8470115 Msa0715410:intron 20.0%
!!! CTTTCTCAACTTATTTTATA+GGG + chr5_1:8470232-8470251 None:intergenic 20.0%
!!! CTATAAAATAAGTTGAGAAA+GGG - chr5_1:8470231-8470250 Msa0715410:intron 20.0%
!!! TATAAAATAAGTTGAGAAAG+GGG - chr5_1:8470232-8470251 Msa0715410:intron 20.0%
!! ATAGATAATCATAGTTAGTT+TGG - chr5_1:8470582-8470601 Msa0715410:intron 20.0%
!!! CTTTTTATTGTACTAACATT+TGG + chr5_1:8470693-8470712 None:intergenic 20.0%
!!! TTATGTTTTGATGGATAATT+GGG + chr5_1:8470860-8470879 None:intergenic 20.0%
!!! TTTATGTTTTGATGGATAAT+TGG + chr5_1:8470861-8470880 None:intergenic 20.0%
!! ATAGAAAAAGAAAAACTTGT+TGG - chr5_1:8470966-8470985 Msa0715410:intron 20.0%
!!! AGTAATTAATGTTGTTATTG+TGG + chr5_1:8471107-8471126 None:intergenic 20.0%
!!! TTGTTCAATTTGAGATTAAA+AGG - chr5_1:8471485-8471504 Msa0715410:intron 20.0%
!!! TGTTCAATTTGAGATTAAAA+GGG - chr5_1:8471486-8471505 Msa0715410:intron 20.0%
!! AAGATTGAATTATTGAAAGA+TGG - chr5_1:8471628-8471647 Msa0715410:intron 20.0%
!! AATTACTAGTACTATTTGTT+TGG - chr5_1:8471789-8471808 Msa0715410:intron 20.0%
!! GATAGATATTTATTCTACTA+TGG - chr5_1:8472439-8472458 Msa0715410:intron 20.0%
!! ATATATCAAAACTTTGTTGA+AGG + chr5_1:8472971-8472990 None:intergenic 20.0%
!!! TCAACAAAGTTTTGATATAT+TGG - chr5_1:8472971-8472990 Msa0715410:intron 20.0%
!!! TTTTAAGTTATTTGTCTTGT+CGG - chr5_1:8473319-8473338 Msa0715410:intron 20.0%
!!! TGTTTAAACGACAATTATTT+TGG - chr5_1:8473907-8473926 Msa0715410:intron 20.0%
!! TATCAAACTTGAAAAGAATA+AGG - chr5_1:8474197-8474216 Msa0715410:intron 20.0%
!! TATAAATGGAATAACATATG+TGG + chr5_1:8474908-8474927 None:intergenic 20.0%
!!! CCTTTCTCAACTTATTTTAT+AGG + chr5_1:8470233-8470252 None:intergenic 25.0%
!! CCTATAAAATAAGTTGAGAA+AGG - chr5_1:8470230-8470249 Msa0715410:intron 25.0%
! ATTAAAAGATATTGGACATG+AGG + chr5_1:8470395-8470414 None:intergenic 25.0%
!! AGTGATCTTTTATGACATTT+TGG + chr5_1:8470659-8470678 None:intergenic 25.0%
!!! ATTATTTTTGAGCGAAAAGA+GGG + chr5_1:8470741-8470760 None:intergenic 25.0%
!!! TATTATTTTTGAGCGAAAAG+AGG + chr5_1:8470742-8470761 None:intergenic 25.0%
! AAATTAGTGTGAATGAGATA+GGG - chr5_1:8470895-8470914 Msa0715410:intron 25.0%
! TATGATCTGTAGGTATTTAT+AGG + chr5_1:8471037-8471056 None:intergenic 25.0%
! GCTCTTGAAACAATAAAAAA+TGG - chr5_1:8471208-8471227 Msa0715410:intron 25.0%
! TTGACACATATAAAAGAGAT+TGG - chr5_1:8471523-8471542 Msa0715410:intron 25.0%
! TCAATCTTCAACTTATTCAA+AGG + chr5_1:8471616-8471635 None:intergenic 25.0%
! TCAAAGTCAGTTTAGATAAA+TGG + chr5_1:8471851-8471870 None:intergenic 25.0%
! ACTTTCTAAATCAAGCATAA+TGG + chr5_1:8471948-8471967 None:intergenic 25.0%
!! ATTGCCAGATTATAAGATTT+TGG - chr5_1:8472220-8472239 Msa0715410:intron 25.0%
! GTACTTATAGATTAGTGTTT+AGG + chr5_1:8472573-8472592 None:intergenic 25.0%
!!! ACAAAGTTTTGATATATTGG+AGG - chr5_1:8472974-8472993 Msa0715410:intron 25.0%
! TATGACATCAATCAAATTTC+TGG + chr5_1:8473147-8473166 None:intergenic 25.0%
! CAACAAACATAATTTAGCAA+TGG + chr5_1:8473363-8473382 None:intergenic 25.0%
!!! CTAAATTATGTTTGTTGTAC+AGG - chr5_1:8473366-8473385 Msa0715410:intron 25.0%
!! AGTCTTTTTCTATGTTCAAA+TGG + chr5_1:8473488-8473507 None:intergenic 25.0%
!!! AAAGTTATTTCTGTAACAGA+TGG + chr5_1:8473714-8473733 None:intergenic 25.0%
!! TACAGATGACAAATTTTCTT+CGG - chr5_1:8474003-8474022 Msa0715410:intron 25.0%
!!! GTTTTGATAGTCACAAATTA+TGG - chr5_1:8474130-8474149 Msa0715410:intron 25.0%
! AAACTTGAAAAGAATAAGGT+TGG - chr5_1:8474201-8474220 Msa0715410:intron 25.0%
! GTAATGTTACAAAATTCATC+AGG + chr5_1:8474394-8474413 None:intergenic 25.0%
! AGAAATTACCGAATGATATT+GGG - chr5_1:8474599-8474618 Msa0715410:intron 25.0%
! ATCTTTAGATTAGGAATGTT+GGG + chr5_1:8474769-8474788 None:intergenic 25.0%
! TATCTTTAGATTAGGAATGT+TGG + chr5_1:8474770-8474789 None:intergenic 25.0%
!! TTTAAGTTTATCTCTGCTTT+AGG + chr5_1:8474799-8474818 None:intergenic 25.0%
! AAGCAGAGATAAACTTAAAT+TGG - chr5_1:8474800-8474819 Msa0715410:intron 25.0%
! TATAAAAGGAGTAATCTTTC+AGG + chr5_1:8475014-8475033 None:intergenic 25.0%
GTATTACAAAGATGATACAG+AGG - chr5_1:8470013-8470032 Msa0715410:CDS 30.0%
TCATATGTATCGTGATTTCT+AGG - chr5_1:8470192-8470211 Msa0715410:intron 30.0%
!!! TTATTTTTGAGCGAAAAGAG+GGG + chr5_1:8470740-8470759 None:intergenic 30.0%
GAAATTAGTGTGAATGAGAT+AGG - chr5_1:8470894-8470913 Msa0715410:intron 30.0%
! ATAGGCACTTCAAGATATTT+TGG + chr5_1:8471019-8471038 None:intergenic 30.0%
!! CATAGGAATTTTGAAAGCTT+TGG - chr5_1:8471261-8471280 Msa0715410:intron 30.0%
!! TTTGAAAGCTTTGGAACTTA+AGG - chr5_1:8471270-8471289 Msa0715410:intron 30.0%
CTTAAGGTAGAAGAATTGAA+AGG - chr5_1:8471286-8471305 Msa0715410:intron 30.0%
AAAGGTTGCAATGATTCATT+GGG - chr5_1:8471304-8471323 Msa0715410:intron 30.0%
AATCTCTCTATCTCTTCTTT+GGG + chr5_1:8471334-8471353 None:intergenic 30.0%
TAATCTCTCTATCTCTTCTT+TGG + chr5_1:8471335-8471354 None:intergenic 30.0%
GAAGCAAATTGAGAAGATTA+AGG - chr5_1:8471447-8471466 Msa0715410:intron 30.0%
ACACATATAAAAGAGATTGG+TGG - chr5_1:8471526-8471545 Msa0715410:intron 30.0%
CACATATAAAAGAGATTGGT+GGG - chr5_1:8471527-8471546 Msa0715410:intron 30.0%
TAGATAGTACCTTTGATTAG+TGG + chr5_1:8471727-8471746 None:intergenic 30.0%
! AACTGACTTTGAATTGAGAT+TGG - chr5_1:8471859-8471878 Msa0715410:intron 30.0%
GTACGGAACTTTATGTAATT+TGG - chr5_1:8471890-8471909 Msa0715410:intron 30.0%
TAACAAAGAATATGTTACCG+CGG + chr5_1:8471995-8472014 None:intergenic 30.0%
GAAGATGCAATTAACCAATT+GGG - chr5_1:8472101-8472120 Msa0715410:intron 30.0%
!! TATTAGTCTTGGATGATGTT+TGG - chr5_1:8472159-8472178 Msa0715410:intron 30.0%
TGAATTTGAACTTCTCAACA+AGG + chr5_1:8472199-8472218 None:intergenic 30.0%
GTCACCAAAATCTTATAATC+TGG + chr5_1:8472227-8472246 None:intergenic 30.0%
!! ATAAGATTTTGGTGACTTCA+AGG - chr5_1:8472231-8472250 Msa0715410:intron 30.0%
! TCATCGACAAGATTTTTATC+CGG + chr5_1:8472368-8472387 None:intergenic 30.0%
TGCAATTGTATAATGACTAC+GGG + chr5_1:8472746-8472765 None:intergenic 30.0%
GTGCAATTGTATAATGACTA+CGG + chr5_1:8472747-8472766 None:intergenic 30.0%
AAATCAGTGAGTAACATCAA+AGG + chr5_1:8472787-8472806 None:intergenic 30.0%
! ATTGCTATTAGACTCAAGAA+TGG + chr5_1:8472937-8472956 None:intergenic 30.0%
CTACATAACTTCAAAGAAGA+TGG - chr5_1:8473086-8473105 Msa0715410:intron 30.0%
ATGAAGAAGTAAAGAATGCA+TGG - chr5_1:8473244-8473263 Msa0715410:intron 30.0%
AGTAAAGAATGCATGGATTT+CGG - chr5_1:8473251-8473270 Msa0715410:intron 30.0%
!! AGACTGATCATTGACTTAAA+TGG - chr5_1:8473503-8473522 Msa0715410:intron 30.0%
! AGTTGATATAGACAATATGC+GGG + chr5_1:8473639-8473658 None:intergenic 30.0%
! CAGTTGATATAGACAATATG+CGG + chr5_1:8473640-8473659 None:intergenic 30.0%
ACTATATGCACACTTACAAA+TGG - chr5_1:8473678-8473697 Msa0715410:CDS 30.0%
!!! GACAATTATTTTGGAACAGA+TGG - chr5_1:8473916-8473935 Msa0715410:intron 30.0%
! ATGACAAATTTTCTTCGGAT+TGG - chr5_1:8474008-8474027 Msa0715410:intron 30.0%
! ATCATTTTGTCTGTGAAATC+TGG + chr5_1:8474100-8474119 None:intergenic 30.0%
CTTTGTATTGCACATATGAA+GGG + chr5_1:8474278-8474297 None:intergenic 30.0%
TCTTTGTATTGCACATATGA+AGG + chr5_1:8474279-8474298 None:intergenic 30.0%
TATTGCAAAGTTGGAGAATT+TGG - chr5_1:8474471-8474490 Msa0715410:intron 30.0%
CAGAAATTACCGAATGATAT+TGG - chr5_1:8474598-8474617 Msa0715410:intron 30.0%
GAAATTACCGAATGATATTG+GGG - chr5_1:8474600-8474619 Msa0715410:intron 30.0%
GGCATATCTATCTTTAGATT+AGG + chr5_1:8474778-8474797 None:intergenic 30.0%
GGACAAGATTATGGTATAAA+TGG + chr5_1:8474922-8474941 None:intergenic 30.0%
AACAAAGTATGAGTTTGTGT+TGG - chr5_1:8474956-8474975 Msa0715410:intron 30.0%
TAAATGTAATATACTCAGCG+TGG - chr5_1:8474988-8475007 Msa0715410:CDS 30.0%
! TTTGCGATTGAATTGACTCT+AGG + chr5_1:8470059-8470078 None:intergenic 35.0%
ACGTGGAACATAAAGTATAG+AGG + chr5_1:8470281-8470300 None:intergenic 35.0%
!!! TAAGTCTTTTGACTTACACC+TGG - chr5_1:8470354-8470373 Msa0715410:intron 35.0%
ACAAATATCTACCGCAACAA+AGG - chr5_1:8470832-8470851 Msa0715410:intron 35.0%
ATAATTGGGAACCTTTGTTG+CGG + chr5_1:8470846-8470865 None:intergenic 35.0%
GAAAGGTTGCAATGATTCAT+TGG - chr5_1:8471303-8471322 Msa0715410:intron 35.0%
!!! TGAAGCTTTTGTTGGTAATG+CGG + chr5_1:8471427-8471446 None:intergenic 35.0%
!!! TTTGCTTCTGAAGCTTTTGT+TGG + chr5_1:8471435-8471454 None:intergenic 35.0%
TGAGATTAAAAGGGATGTCA+TGG - chr5_1:8471495-8471514 Msa0715410:intron 35.0%
AGATTGGTGGGAATCAATTT+AGG - chr5_1:8471539-8471558 Msa0715410:intron 35.0%
GATTGGTGGGAATCAATTTA+GGG - chr5_1:8471540-8471559 Msa0715410:intron 35.0%
ATTGGTGGGAATCAATTTAG+GGG - chr5_1:8471541-8471560 Msa0715410:intron 35.0%
CTAGTACTATTTGTTTGGAG+TGG - chr5_1:8471794-8471813 Msa0715410:intron 35.0%
ATTAGTACTTGTGAGACTCT+GGG - chr5_1:8471819-8471838 Msa0715410:intron 35.0%
CAAAATCTATTTGAACGCTG+TGG - chr5_1:8472050-8472069 Msa0715410:intron 35.0%
TATTTGAACGCTGTGGATTT+CGG - chr5_1:8472057-8472076 Msa0715410:intron 35.0%
CGAAGATGCAATTAACCAAT+TGG - chr5_1:8472100-8472119 Msa0715410:intron 35.0%
!! ATTTTGGTGACTTCAAGGAT+TGG - chr5_1:8472236-8472255 Msa0715410:intron 35.0%
TTGAGCATAGTGACAGAAAA+GGG + chr5_1:8472321-8472340 None:intergenic 35.0%
ATTGAGCATAGTGACAGAAA+AGG + chr5_1:8472322-8472341 None:intergenic 35.0%
GGATAAAAATCTTGTCGATG+AGG - chr5_1:8472367-8472386 Msa0715410:intron 35.0%
ACAGATAGTGAAAGCTTGTA+AGG - chr5_1:8472818-8472837 Msa0715410:intron 35.0%
CAGATAGTGAAAGCTTGTAA+GGG - chr5_1:8472819-8472838 Msa0715410:intron 35.0%
! ATATTTTGCCATGTCTCACA+AGG + chr5_1:8472891-8472910 None:intergenic 35.0%
TGAGACATGGCAAAATATGA+AGG - chr5_1:8472893-8472912 Msa0715410:intron 35.0%
TATATTGGAGGACATCAAGA+AGG - chr5_1:8472986-8473005 Msa0715410:intron 35.0%
ATATCAATGAGGACAGTAAC+CGG + chr5_1:8473056-8473075 None:intergenic 35.0%
TTACTGTCCTCATTGATATG+TGG - chr5_1:8473057-8473076 Msa0715410:intron 35.0%
TACTGTCCTCATTGATATGT+GGG - chr5_1:8473058-8473077 Msa0715410:intron 35.0%
CTTCAAAGAAGATGGTACAA+AGG - chr5_1:8473094-8473113 Msa0715410:intron 35.0%
TGATTGATGTCATAGCTACA+AGG - chr5_1:8473153-8473172 Msa0715410:intron 35.0%
GTAAAGAATGCATGGATTTC+GGG - chr5_1:8473252-8473271 Msa0715410:intron 35.0%
!!! GGGTTGTCATTTTATAGCAA+AGG - chr5_1:8473272-8473291 Msa0715410:intron 35.0%
TAGCAATCCATCAAAGCAAA+GGG - chr5_1:8473459-8473478 Msa0715410:intron 35.0%
CGCATATTGTCTATATCAAC+TGG - chr5_1:8473638-8473657 Msa0715410:CDS 35.0%
!!! AAATTTTCTTCGGATTGGTG+TGG - chr5_1:8474013-8474032 Msa0715410:intron 35.0%
TTGGCATAGCATCTGATATT+TGG + chr5_1:8474324-8474343 None:intergenic 35.0%
ATGCTCAAATCCACTAGATT+TGG + chr5_1:8474343-8474362 None:intergenic 35.0%
TCCAACTTTGCAATATCTTG+AGG + chr5_1:8474466-8474485 None:intergenic 35.0%
CCAAATTTGACTACAGAATG+AGG + chr5_1:8474682-8474701 None:intergenic 35.0%
CCTCATTCTGTAGTCAAATT+TGG - chr5_1:8474679-8474698 Msa0715410:intron 35.0%
CATGTAATCTGTGATGAAGA+AGG - chr5_1:8474721-8474740 Msa0715410:intron 35.0%
! GTTGGGATATTTTTCCCATA+AGG + chr5_1:8474752-8474771 None:intergenic 35.0%
CAGTTACATGGACAAGATTA+TGG + chr5_1:8474931-8474950 None:intergenic 35.0%
CTTTGTTCACTACAGTTACA+TGG + chr5_1:8474943-8474962 None:intergenic 35.0%
AAGTATGAGTTTGTGTTGGA+CGG - chr5_1:8474960-8474979 Msa0715410:intron 35.0%
! TAAGTTGAGAAAGGGGAAAG+AGG - chr5_1:8470239-8470258 Msa0715410:intron 40.0%
GGTTCACAATGTTTCTTACG+TGG + chr5_1:8470298-8470317 None:intergenic 40.0%
! ACTTGTTGGCTAAGCTAAAG+TGG - chr5_1:8470980-8470999 Msa0715410:intron 40.0%
ACCTACAGATCATAGTTCCT+TGG - chr5_1:8471043-8471062 Msa0715410:intron 40.0%
TGAACTATGAACTCAAGCCA+AGG + chr5_1:8471063-8471082 None:intergenic 40.0%
AGACAAACACAAGAGTTCCA+TGG - chr5_1:8471141-8471160 Msa0715410:intron 40.0%
GATTAAAAGGGATGTCATGG+AGG - chr5_1:8471498-8471517 Msa0715410:intron 40.0%
AATCAATTTAGGGGTCTGTG+TGG - chr5_1:8471550-8471569 Msa0715410:intron 40.0%
!!! GTTTCTGTGCTTGTTTTGAC+TGG - chr5_1:8471652-8471671 Msa0715410:intron 40.0%
!!! TGTGCTTGTTTTGACTGGTT+TGG - chr5_1:8471657-8471676 Msa0715410:intron 40.0%
!!! GTGCTTGTTTTGACTGGTTT+GGG - chr5_1:8471658-8471677 Msa0715410:intron 40.0%
TGTTGGGATCCACTAATCAA+AGG - chr5_1:8471715-8471734 Msa0715410:intron 40.0%
CATTAGTACTTGTGAGACTC+TGG - chr5_1:8471818-8471837 Msa0715410:intron 40.0%
TGAGATTGGATAGCGTAGTA+CGG - chr5_1:8471873-8471892 Msa0715410:intron 40.0%
!! TTTTGACTAGACAAGTTCCG+CGG - chr5_1:8471975-8471994 Msa0715410:intron 40.0%
TGTACAATGTTCCTCACGTT+GGG + chr5_1:8472032-8472051 None:intergenic 40.0%
TTGTACAATGTTCCTCACGT+TGG + chr5_1:8472033-8472052 None:intergenic 40.0%
ATTTGAACGCTGTGGATTTC+GGG - chr5_1:8472058-8472077 Msa0715410:intron 40.0%
!! TCTTCGTCGCTTTGAAAATC+AGG + chr5_1:8472086-8472105 None:intergenic 40.0%
AGCTTGTAAGGGTTTACCAT+TGG - chr5_1:8472830-8472849 Msa0715410:intron 40.0%
GTAATCAACCTTGTGAGACA+TGG - chr5_1:8472880-8472899 Msa0715410:intron 40.0%
!! AAGGAGTGCTTCATGGATAT+GGG - chr5_1:8473005-8473024 Msa0715410:intron 40.0%
AGAAGATGGTACAAAGGCAA+TGG - chr5_1:8473100-8473119 Msa0715410:intron 40.0%
GGCGATGAAATCATGAACAA+TGG + chr5_1:8473126-8473145 None:intergenic 40.0%
CTAGCAATCCATCAAAGCAA+AGG - chr5_1:8473458-8473477 Msa0715410:intron 40.0%
AGCAATCCATCAAAGCAAAG+GGG - chr5_1:8473460-8473479 Msa0715410:intron 40.0%
CTGAATCAGCAAGGAATCAT+TGG - chr5_1:8473554-8473573 Msa0715410:CDS 40.0%
CGTATGTACTCATTCATTGC+CGG - chr5_1:8473578-8473597 Msa0715410:CDS 40.0%
TCTCTGTTTGACCAACATTC+CGG + chr5_1:8473600-8473619 None:intergenic 40.0%
GGTCAAACAGAGACAACTAA+AGG - chr5_1:8473607-8473626 Msa0715410:CDS 40.0%
TCCCAAGAGACTCTGATAAA+GGG - chr5_1:8473740-8473759 Msa0715410:CDS 40.0%
ACCCTTTATCAGAGTCTCTT+GGG + chr5_1:8473744-8473763 None:intergenic 40.0%
ACTTGGTTACTTCAGAACGA+TGG + chr5_1:8474159-8474178 None:intergenic 40.0%
GTAACCAAGTTTGAGCTACT+CGG - chr5_1:8474169-8474188 Msa0715410:intron 40.0%
AAAACCGAGTAGCTCAAACT+TGG + chr5_1:8474176-8474195 None:intergenic 40.0%
AGATGCTATGCCAAATCTAG+TGG - chr5_1:8474330-8474349 Msa0715410:intron 40.0%
GCCTCAAGATATTGCAAAGT+TGG - chr5_1:8474462-8474481 Msa0715410:intron 40.0%
!! TGGAGAATTTGGAAGTGCTA+AGG - chr5_1:8474482-8474501 Msa0715410:intron 40.0%
CATGTCTTCTAAGTCAGAAC+AGG + chr5_1:8474515-8474534 None:intergenic 40.0%
TGCAAGTCCCCAATATCATT+CGG + chr5_1:8474610-8474629 None:intergenic 40.0%
ACTTGAGAAGCTCTACATGA+AGG - chr5_1:8474633-8474652 Msa0715410:intron 40.0%
CTTGAGAAGCTCTACATGAA+GGG - chr5_1:8474634-8474653 Msa0715410:intron 40.0%
ATGAAGAAGGTTCTGCCTTA+TGG - chr5_1:8474734-8474753 Msa0715410:intron 40.0%
TGAAGAAGGTTCTGCCTTAT+GGG - chr5_1:8474735-8474754 Msa0715410:intron 40.0%
ATCTTCATGAACCAACACTC+AGG + chr5_1:8474842-8474861 None:intergenic 40.0%
! TGACTTACACCTGGTGTCAA+TGG - chr5_1:8470363-8470382 Msa0715410:intron 45.0%
GCCAAGGAACTATGATCTGT+AGG + chr5_1:8471047-8471066 None:intergenic 45.0%
CAAACACAAGAGTTCCATGG+TGG - chr5_1:8471144-8471163 Msa0715410:intron 45.0%
!! TCCATGGTGGATGCATTAAG+TGG - chr5_1:8471157-8471176 Msa0715410:intron 45.0%
!! CCATGGTGGATGCATTAAGT+GGG - chr5_1:8471158-8471177 Msa0715410:intron 45.0%
!! CATGGTGGATGCATTAAGTG+GGG - chr5_1:8471159-8471178 Msa0715410:intron 45.0%
GAGAGATTAGAGACTCTCGT+AGG - chr5_1:8471346-8471365 Msa0715410:intron 45.0%
!!! CTTGTTTTGACTGGTTTGGG+TGG - chr5_1:8471661-8471680 Msa0715410:intron 45.0%
TCTTGCCAAGAAGCTCTGTT+GGG - chr5_1:8471699-8471718 Msa0715410:intron 45.0%
!! CACGTTGGGAGTTTTTGAGA+AGG + chr5_1:8472018-8472037 None:intergenic 45.0%
TCTCAAAAACTCCCAACGTG+AGG - chr5_1:8472018-8472037 Msa0715410:intron 45.0%
! CATCATCAAGTGGACTCAAC+TGG + chr5_1:8472286-8472305 None:intergenic 45.0%
ACTGCAGGATCATCATCAAG+TGG + chr5_1:8472296-8472315 None:intergenic 45.0%
! TGACTACGGGCTGTTTGAAT+TGG + chr5_1:8472733-8472752 None:intergenic 45.0%
!! CATCAAGAAGGAGTGCTTCA+TGG - chr5_1:8472998-8473017 Msa0715410:intron 45.0%
!! GAAGGAGTGCTTCATGGATA+TGG - chr5_1:8473004-8473023 Msa0715410:intron 45.0%
GACTATTTCCAGAAGACCAG+AGG - chr5_1:8473027-8473046 Msa0715410:intron 45.0%
GTTCTGCCCACATATCAATG+AGG + chr5_1:8473067-8473086 None:intergenic 45.0%
!! GATGGATTGCTAGATCTCTG+AGG + chr5_1:8473451-8473470 None:intergenic 45.0%
ATGGTTCCCCTTTGCTTTGA+TGG + chr5_1:8473469-8473488 None:intergenic 45.0%
ATGGAGATACTCGTCCTGAT+TGG - chr5_1:8473522-8473541 Msa0715410:intron 45.0%
TTCAGTCCAATCCACCAATC+AGG + chr5_1:8473539-8473558 None:intergenic 45.0%
! TGGATTGGACTGAATCAGCA+AGG - chr5_1:8473545-8473564 Msa0715410:CDS 45.0%
CTCATTCATTGCCGGAATGT+TGG - chr5_1:8473586-8473605 Msa0715410:CDS 45.0%
CTCCCAAGAGACTCTGATAA+AGG - chr5_1:8473739-8473758 Msa0715410:CDS 45.0%
CACCCTTTATCAGAGTCTCT+TGG + chr5_1:8473745-8473764 None:intergenic 45.0%
CAAGAGACTCTGATAAAGGG+TGG - chr5_1:8473743-8473762 Msa0715410:CDS 45.0%
TCTCCAATCTGCATAGGCAA+GGG + chr5_1:8474240-8474259 None:intergenic 45.0%
TTCTCCAATCTGCATAGGCA+AGG + chr5_1:8474241-8474260 None:intergenic 45.0%
GCAGATTCTCCAATCTGCAT+AGG + chr5_1:8474246-8474265 None:intergenic 45.0%
GACATGCTAGAATCTGTTGC+AGG - chr5_1:8474529-8474548 Msa0715410:intron 45.0%
TGTAACTCGTTCCTGAGTGT+TGG - chr5_1:8474828-8474847 Msa0715410:intron 45.0%
!!! ATTTTTATTTTTATTTTTGA+CGG - chr5_1:8470156-8470175 Msa0715410:intron 5.0%
AGGCATGATCCATTGACACC+AGG + chr5_1:8470375-8470394 None:intergenic 50.0%
CCCACTTAATGCATCCACCA+TGG + chr5_1:8471161-8471180 None:intergenic 50.0%
TCCACTCTCGAAACGAGCAT+AGG - chr5_1:8471244-8471263 Msa0715410:intron 50.0%
TCCTATGCTCGTTTCGAGAG+TGG + chr5_1:8471248-8471267 None:intergenic 50.0%
ATGCATACAGGCTCTTGAGG+AGG + chr5_1:8471580-8471599 None:intergenic 50.0%
TCCTCAAGAGCCTGTATGCA+TGG - chr5_1:8471579-8471598 Msa0715410:intron 50.0%
CCTCAAGAGCCTGTATGCAT+GGG - chr5_1:8471580-8471599 Msa0715410:intron 50.0%
AGAGCCTGTATGCATGGGAA+TGG - chr5_1:8471585-8471604 Msa0715410:intron 50.0%
CCATCCATTCCCATGCATAC+AGG + chr5_1:8471592-8471611 None:intergenic 50.0%
CCTGTATGCATGGGAATGGA+TGG - chr5_1:8471589-8471608 Msa0715410:intron 50.0%
!! TTGACTGGTTTGGGTGGATC+TGG - chr5_1:8471667-8471686 Msa0715410:intron 50.0%
CTCTTGCCAAGAAGCTCTGT+TGG - chr5_1:8471698-8471717 Msa0715410:intron 50.0%
TGGATCCCAACAGAGCTTCT+TGG + chr5_1:8471707-8471726 None:intergenic 50.0%
GACTCAGCAGATGTCCCAAT+TGG + chr5_1:8472118-8472137 None:intergenic 50.0%
GTCTTGGATGATGTTTGGCC+TGG - chr5_1:8472164-8472183 Msa0715410:intron 50.0%
! AAGTGGACTCAACTGGCACA+GGG + chr5_1:8472279-8472298 None:intergenic 50.0%
TGACAGAAAAGGGACACTGC+AGG + chr5_1:8472311-8472330 None:intergenic 50.0%
TCACAGCAGCTCATACATGC+CGG - chr5_1:8472346-8472365 Msa0715410:intron 50.0%
TCCAGAAGACCAGAGGATTC+CGG - chr5_1:8473034-8473053 Msa0715410:intron 50.0%
GAGATACTCGTCCTGATTGG+TGG - chr5_1:8473525-8473544 Msa0715410:intron 50.0%
! ACTCGTCCTGATTGGTGGAT+TGG - chr5_1:8473530-8473549 Msa0715410:intron 50.0%
ATCATAACCTCGGCTTCACC+AGG + chr5_1:8474046-8474065 None:intergenic 50.0%
AGTCCCTTGCCTATGCAGAT+TGG - chr5_1:8474234-8474253 Msa0715410:intron 50.0%
!! GAGGCATTGCTGAAAGCTTG+TGG + chr5_1:8474447-8474466 None:intergenic 50.0%
GATACAGAGGCAGACACACG+TGG - chr5_1:8470026-8470045 Msa0715410:CDS 55.0%
!! AAAGAGGGGCACTCACGTGT+CGG + chr5_1:8470726-8470745 None:intergenic 55.0%
GGATGCATTAAGTGGGGCTG+CGG - chr5_1:8471165-8471184 Msa0715410:intron 55.0%
CATACAGGCTCTTGAGGAGG+AGG + chr5_1:8471577-8471596 None:intergenic 55.0%
CCCATGCATACAGGCTCTTG+AGG + chr5_1:8471583-8471602 None:intergenic 55.0%
GATGTTTGGCCTGGCTCAGA+AGG - chr5_1:8472173-8472192 Msa0715410:intron 55.0%
TCAACAAGGCCTTCTGAGCC+AGG + chr5_1:8472185-8472204 None:intergenic 55.0%
! CAAGTGGACTCAACTGGCAC+AGG + chr5_1:8472280-8472299 None:intergenic 55.0%
GGGTTTACCATTGGCGCTTG+AGG - chr5_1:8472839-8472858 Msa0715410:intron 55.0%
! ACCGGAATCCTCTGGTCTTC+TGG + chr5_1:8473038-8473057 None:intergenic 55.0%
GGACAGTAACCGGAATCCTC+TGG + chr5_1:8473046-8473065 None:intergenic 55.0%
GATTGGTGTGGCATGCAACC+TGG - chr5_1:8474025-8474044 Msa0715410:intron 55.0%
CGAGACAACGTAGCTCGTTG+AGG + chr5_1:8474555-8474574 None:intergenic 55.0%
TGCATTAAGTGGGGCTGCGG+CGG - chr5_1:8471168-8471187 Msa0715410:intron 60.0%
GCAACGACCTCAAGCGCCAA+TGG + chr5_1:8472849-8472868 None:intergenic 60.0%
TTGGCGCTTGAGGTCGTTGC+TGG - chr5_1:8472849-8472868 Msa0715410:intron 60.0%
CATGCAACCTGGTGAAGCCG+AGG - chr5_1:8474036-8474055 Msa0715410:intron 60.0%
GCATTAAGTGGGGCTGCGGC+GGG - chr5_1:8471169-8471188 Msa0715410:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 8470011 8475044 8470011 ID=Msa0715410;Name=Msa0715410
chr5_1 mRNA 8470011 8475044 8470011 ID=Msa0715410-mRNA-1;Parent=Msa0715410;Name=Msa0715410-mRNA-1;_AED=0.65;_eAED=0.65;_QI=0|0|0|0.33|0.5|0.33|3|0|113
chr5_1 exon 8474970 8475044 8474970 ID=Msa0715410-mRNA-1:exon:3544;Parent=Msa0715410-mRNA-1
chr5_1 exon 8473536 8473763 8473536 ID=Msa0715410-mRNA-1:exon:3543;Parent=Msa0715410-mRNA-1
chr5_1 exon 8470011 8470049 8470011 ID=Msa0715410-mRNA-1:exon:3542;Parent=Msa0715410-mRNA-1
chr5_1 CDS 8474970 8475044 8474970 ID=Msa0715410-mRNA-1:cds;Parent=Msa0715410-mRNA-1
chr5_1 CDS 8473536 8473763 8473536 ID=Msa0715410-mRNA-1:cds;Parent=Msa0715410-mRNA-1
chr5_1 CDS 8470011 8470049 8470011 ID=Msa0715410-mRNA-1:cds;Parent=Msa0715410-mRNA-1
Gene Sequence

>Msa0715410

ATGTATTACAAAGATGATACAGAGGCAGACACACGTGGACTAGAGCCTAGAGTCAATTCAATCGCAAAAGACACAGTAGAAGAATTGAAAGGTTGCAATGATTCATTGGGAAGACCCAAAGAAGAGATAGAGAGATTAGAGACTCTCGTAGGAGAACTCAAAGAGCTTGTAAGAAAGTGCAAGAAGCTTAAGAACTTTCTTTTTTTTCCGCATTACCAACAAAAGCTTCAGAAGCAAATTGAGAAGATTAAGGAACATATGTCTATTATTGTTCAATTTGAGATTAAAAGGGATGTCATGGAGCGTGGCCTGAAAGATTACTCCTTTTATAATATTCTGTAA

Protein sequence

>Msa0715410

MYYKDDTEADTRGLEPRVNSIAKDTVEELKGCNDSLGRPKEEIERLETLVGELKELVRKCKKLKNFLFFPHYQQKLQKQIEKIKEHMSIIVQFEIKRDVMERGLKDYSFYNIL*