Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779270 | sp|Q0JHU5|ERG1_ORYSJ | 43.421 | 152 | 84 | 1 | 4 | 153 | 5 | 156 | 2.95e-45 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779270 | G7KBR3 | 97.484 | 159 | 3 | 1 | 1 | 158 | 1 | 159 | 9.50e-111 | 320 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0737500 | Msa0779270 | 0.817854 | 2.656347e-52 | -8.615850e-47 |
| Msa0779270 | Msa0779280 | 0.985439 | 1.434310e-163 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779270 | MtrunA17_Chr5g0435261 | 97.484 | 159 | 3 | 1 | 1 | 158 | 1 | 159 | 1.83e-114 | 320 |
| Msa0779270 | MtrunA17_Chr5g0435251 | 60.000 | 155 | 60 | 2 | 1 | 155 | 1 | 153 | 4.49e-59 | 180 |
| Msa0779270 | MtrunA17_Chr8g0350031 | 42.038 | 157 | 76 | 5 | 1 | 154 | 1 | 145 | 4.12e-35 | 119 |
| Msa0779270 | MtrunA17_Chr8g0350021 | 39.490 | 157 | 80 | 5 | 1 | 154 | 1 | 145 | 7.11e-32 | 111 |
| Msa0779270 | MtrunA17_Chr8g0348941 | 31.250 | 144 | 97 | 2 | 1 | 143 | 1 | 143 | 8.62e-19 | 79.0 |
| Msa0779270 | MtrunA17_Chr1g0147471 | 43.750 | 64 | 32 | 1 | 27 | 90 | 2 | 61 | 4.97e-16 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779270 | AT3G55470.2 | 44.444 | 153 | 84 | 1 | 1 | 153 | 1 | 152 | 1.85e-43 | 141 |
| Msa0779270 | AT3G55470.1 | 44.156 | 154 | 84 | 2 | 1 | 153 | 1 | 153 | 1.24e-41 | 136 |
| Msa0779270 | AT1G63220.1 | 38.994 | 159 | 81 | 6 | 1 | 155 | 1 | 147 | 5.35e-27 | 99.4 |
| Msa0779270 | AT1G63220.2 | 35.220 | 159 | 73 | 6 | 1 | 155 | 1 | 133 | 3.86e-20 | 81.3 |
| Msa0779270 | AT4G00467.2 | 31.618 | 136 | 88 | 2 | 1 | 134 | 1 | 133 | 7.61e-20 | 82.0 |
| Msa0779270 | AT4G00467.1 | 31.618 | 136 | 88 | 2 | 1 | 134 | 1 | 133 | 1.49e-19 | 81.6 |
| Msa0779270 | AT4G34150.1 | 36.082 | 97 | 57 | 2 | 5 | 101 | 11 | 102 | 1.00e-12 | 63.9 |
Find 35 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTATTGTAAAGATTTAT+TGG | 0.151708 | 5_2:+60440460 | Msa0779270:CDS |
| TTCTTTCTAGCAAGTATTAA+AGG | 0.194707 | 5_2:+60440875 | Msa0779270:three_prime_UTR |
| CTCAATAGCACTTGTTTCTT+TGG | 0.198258 | 5_2:+60440025 | Msa0779270:CDS |
| GTAGCTTAGCAACTCCATTT+TGG | 0.254845 | 5_2:-60440493 | None:intergenic |
| TTGGCTCAAGGTGTCCAAAA+TGG | 0.321323 | 5_2:+60440479 | Msa0779270:CDS |
| AGATATGGCAATTGGGATAA+TGG | 0.338735 | 5_2:+60439976 | Msa0779270:exon |
| CAAAGTCATTCTCAAAATAA+TGG | 0.344213 | 5_2:+60440285 | Msa0779270:CDS |
| GGCTCCTATGCTCTTGGCCT+TGG | 0.379325 | 5_2:-60440177 | None:intergenic |
| ACACTCAAAGATATGGCAAT+TGG | 0.382620 | 5_2:+60439968 | Msa0779270:exon |
| GTAGAGGAAGAAATCATGTA+TGG | 0.444098 | 5_2:+60440212 | Msa0779270:CDS |
| TTCTCATACACTCAAAGATA+TGG | 0.452127 | 5_2:+60439961 | Msa0779270:exon |
| CACTCAAAGATATGGCAATT+GGG | 0.464148 | 5_2:+60439969 | Msa0779270:exon |
| CATAAATGTATGTTGTTACA+TGG | 0.468329 | 5_2:+60440898 | Msa0779270:three_prime_UTR |
| CAATCTCTCCACGATAAGAT+TGG | 0.475600 | 5_2:-60440547 | None:intergenic |
| CAAAGAAACAAGTGCTATTG+AGG | 0.483426 | 5_2:-60440024 | None:intergenic |
| CTATATTAATATAGGTGGAA+TGG | 0.484803 | 5_2:+60440129 | Msa0779270:intron |
| CCACACGGCTCCTATGCTCT+TGG | 0.487013 | 5_2:-60440183 | None:intergenic |
| CATAGGAGCCGTGTGGCTAA+AGG | 0.495986 | 5_2:+60440190 | Msa0779270:CDS |
| TTGGTATTGTATCAAAACAT+AGG | 0.496228 | 5_2:-60440158 | None:intergenic |
| TGTAAAGATTTATTGGCTCA+AGG | 0.515900 | 5_2:+60440467 | Msa0779270:CDS |
| AATTCATTCACAGGTGGAAG+AGG | 0.517863 | 5_2:+60440705 | Msa0779270:intron |
| AGCCGTGTGGCTAAAGGTAG+AGG | 0.518837 | 5_2:+60440196 | Msa0779270:CDS |
| TTCCTCTACCTTTAGCCACA+CGG | 0.519437 | 5_2:-60440198 | None:intergenic |
| GTACATGTTGTGAAAGCTAA+AGG | 0.526255 | 5_2:+60440001 | Msa0779270:CDS |
| TTGAAGAAGACATAGGAGGA+TGG | 0.550578 | 5_2:+60440734 | Msa0779270:CDS |
| TGGTATTGTATCAAAACATA+GGG | 0.550960 | 5_2:-60440157 | None:intergenic |
| GAATTAATTGAAGAAGACAT+AGG | 0.564791 | 5_2:+60440727 | Msa0779270:CDS |
| AATACCAAGGCCAAGAGCAT+AGG | 0.592231 | 5_2:+60440173 | Msa0779270:CDS |
| TAGAGGAAGAAATCATGTAT+GGG | 0.596604 | 5_2:+60440213 | Msa0779270:CDS |
| CGAACAACTCTATACTTGAG+AGG | 0.601631 | 5_2:-60440518 | None:intergenic |
| TTAATTGAAGAAGACATAGG+AGG | 0.621683 | 5_2:+60440730 | Msa0779270:CDS |
| ATGTTCAAAGTAGAAAACAA+TGG | 0.628110 | 5_2:+60440247 | Msa0779270:CDS |
| CGTGCAGACCAATCTTATCG+TGG | 0.690565 | 5_2:+60440539 | Msa0779270:CDS |
| ACAACTCTATACTTGAGAGG+TGG | 0.693150 | 5_2:-60440515 | None:intergenic |
| CCAAGAGCATAGGAGCCGTG+TGG | 0.728413 | 5_2:+60440183 | Msa0779270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTAATTAATTACCTT+TGG | - | chr5_2:60440593-60440612 | None:intergenic | 10.0% |
| !! | ATATATTAATTAATTACCTT+TGG | - | chr5_2:60440593-60440612 | None:intergenic | 10.0% |
| !!! | TTTTTTGAATTTGAATCTTT+AGG | + | chr5_2:60439922-60439941 | Msa0779270:five_prime_UTR | 15.0% |
| !!! | TTTTTGAATTTGAATCTTTA+GGG | + | chr5_2:60439923-60439942 | Msa0779270:five_prime_UTR | 15.0% |
| !!! | TTTTACTATATTAATATAGG+TGG | + | chr5_2:60440124-60440143 | Msa0779270:intron | 15.0% |
| !! | AATCTATTGTAAAGATTTAT+TGG | + | chr5_2:60440460-60440479 | Msa0779270:CDS | 15.0% |
| !!! | TTCATATTTCATTTTTGTTA+AGG | + | chr5_2:60440612-60440631 | Msa0779270:intron | 15.0% |
| !!! | TTTTTTGAATTTGAATCTTT+AGG | + | chr5_2:60439922-60439941 | Msa0779270:five_prime_UTR | 15.0% |
| !!! | TTTTTGAATTTGAATCTTTA+GGG | + | chr5_2:60439923-60439942 | Msa0779270:five_prime_UTR | 15.0% |
| !!! | TTTTACTATATTAATATAGG+TGG | + | chr5_2:60440124-60440143 | Msa0779270:intron | 15.0% |
| !! | AATCTATTGTAAAGATTTAT+TGG | + | chr5_2:60440460-60440479 | Msa0779270:CDS | 15.0% |
| !!! | TTCATATTTCATTTTTGTTA+AGG | + | chr5_2:60440612-60440631 | Msa0779270:intron | 15.0% |
| !! | TATGATATGATATGATACAA+GGG | - | chr5_2:60440091-60440110 | None:intergenic | 20.0% |
| !! | ATATGATATGATATGATACA+AGG | - | chr5_2:60440092-60440111 | None:intergenic | 20.0% |
| !! | TATTGTTAGGAATATATATG+TGG | - | chr5_2:60440370-60440389 | None:intergenic | 20.0% |
| !! | AAAAATGAGACATTATTGTT+AGG | - | chr5_2:60440383-60440402 | None:intergenic | 20.0% |
| !! | TTTACAATAGATTCTGTTTA+AGG | - | chr5_2:60440453-60440472 | None:intergenic | 20.0% |
| !! | CATGTAACAATATATAGTTA+TGG | + | chr5_2:60440635-60440654 | Msa0779270:intron | 20.0% |
| !!! | AGTTGATTATTTTTCTTTGT+TGG | + | chr5_2:60440682-60440701 | Msa0779270:intron | 20.0% |
| !!! | ACTACTTTTAGTTTACAAAT+GGG | - | chr5_2:60440802-60440821 | None:intergenic | 20.0% |
| !!! | AACTACTTTTAGTTTACAAA+TGG | - | chr5_2:60440803-60440822 | None:intergenic | 20.0% |
| !! | TATGATATGATATGATACAA+GGG | - | chr5_2:60440091-60440110 | None:intergenic | 20.0% |
| !! | ATATGATATGATATGATACA+AGG | - | chr5_2:60440092-60440111 | None:intergenic | 20.0% |
| !! | TATTGTTAGGAATATATATG+TGG | - | chr5_2:60440370-60440389 | None:intergenic | 20.0% |
| !! | AAAAATGAGACATTATTGTT+AGG | - | chr5_2:60440383-60440402 | None:intergenic | 20.0% |
| !! | TTTACAATAGATTCTGTTTA+AGG | - | chr5_2:60440453-60440472 | None:intergenic | 20.0% |
| !! | CATGTAACAATATATAGTTA+TGG | + | chr5_2:60440635-60440654 | Msa0779270:intron | 20.0% |
| !!! | AGTTGATTATTTTTCTTTGT+TGG | + | chr5_2:60440682-60440701 | Msa0779270:intron | 20.0% |
| !!! | ACTACTTTTAGTTTACAAAT+GGG | - | chr5_2:60440802-60440821 | None:intergenic | 20.0% |
| !!! | AACTACTTTTAGTTTACAAA+TGG | - | chr5_2:60440803-60440822 | None:intergenic | 20.0% |
| ! | GGCAAAATATATGAATGTAA+GGG | - | chr5_2:60440070-60440089 | None:intergenic | 25.0% |
| ! | CTATATTAATATAGGTGGAA+TGG | + | chr5_2:60440129-60440148 | Msa0779270:intron | 25.0% |
| ! | TGGTATTGTATCAAAACATA+GGG | - | chr5_2:60440160-60440179 | None:intergenic | 25.0% |
| ! | TTGGTATTGTATCAAAACAT+AGG | - | chr5_2:60440161-60440180 | None:intergenic | 25.0% |
| !!! | TATGTTTTGATACAATACCA+AGG | + | chr5_2:60440160-60440179 | Msa0779270:CDS | 25.0% |
| ! | ATGTTCAAAGTAGAAAACAA+TGG | + | chr5_2:60440247-60440266 | Msa0779270:CDS | 25.0% |
| ! | CAAAGTCATTCTCAAAATAA+TGG | + | chr5_2:60440285-60440304 | Msa0779270:CDS | 25.0% |
| ! | GAATTAATTGAAGAAGACAT+AGG | + | chr5_2:60440727-60440746 | Msa0779270:CDS | 25.0% |
| !! | TTCTTTCTAGCAAGTATTAA+AGG | + | chr5_2:60440875-60440894 | Msa0779270:three_prime_UTR | 25.0% |
| ! | CATAAATGTATGTTGTTACA+TGG | + | chr5_2:60440898-60440917 | Msa0779270:three_prime_UTR | 25.0% |
| ! | GGCAAAATATATGAATGTAA+GGG | - | chr5_2:60440070-60440089 | None:intergenic | 25.0% |
| ! | CTATATTAATATAGGTGGAA+TGG | + | chr5_2:60440129-60440148 | Msa0779270:intron | 25.0% |
| ! | TGGTATTGTATCAAAACATA+GGG | - | chr5_2:60440160-60440179 | None:intergenic | 25.0% |
| ! | TTGGTATTGTATCAAAACAT+AGG | - | chr5_2:60440161-60440180 | None:intergenic | 25.0% |
| !!! | TATGTTTTGATACAATACCA+AGG | + | chr5_2:60440160-60440179 | Msa0779270:CDS | 25.0% |
| ! | ATGTTCAAAGTAGAAAACAA+TGG | + | chr5_2:60440247-60440266 | Msa0779270:CDS | 25.0% |
| ! | CAAAGTCATTCTCAAAATAA+TGG | + | chr5_2:60440285-60440304 | Msa0779270:CDS | 25.0% |
| ! | GAATTAATTGAAGAAGACAT+AGG | + | chr5_2:60440727-60440746 | Msa0779270:CDS | 25.0% |
| !! | TTCTTTCTAGCAAGTATTAA+AGG | + | chr5_2:60440875-60440894 | Msa0779270:three_prime_UTR | 25.0% |
| ! | CATAAATGTATGTTGTTACA+TGG | + | chr5_2:60440898-60440917 | Msa0779270:three_prime_UTR | 25.0% |
| TTCTCATACACTCAAAGATA+TGG | + | chr5_2:60439961-60439980 | Msa0779270:exon | 30.0% | |
| GGGCAAAATATATGAATGTA+AGG | - | chr5_2:60440071-60440090 | None:intergenic | 30.0% | |
| TAGAGGAAGAAATCATGTAT+GGG | + | chr5_2:60440213-60440232 | Msa0779270:CDS | 30.0% | |
| GTTAGGAATATATATGTGGA+AGG | - | chr5_2:60440366-60440385 | None:intergenic | 30.0% | |
| !! | TGTAAAGATTTATTGGCTCA+AGG | + | chr5_2:60440467-60440486 | Msa0779270:CDS | 30.0% |
| !! | TGCTATTACTTTTACTCCAA+AGG | + | chr5_2:60440574-60440593 | Msa0779270:CDS | 30.0% |
| TTAATTGAAGAAGACATAGG+AGG | + | chr5_2:60440730-60440749 | Msa0779270:CDS | 30.0% | |
| TTCTCATACACTCAAAGATA+TGG | + | chr5_2:60439961-60439980 | Msa0779270:exon | 30.0% | |
| GGGCAAAATATATGAATGTA+AGG | - | chr5_2:60440071-60440090 | None:intergenic | 30.0% | |
| TAGAGGAAGAAATCATGTAT+GGG | + | chr5_2:60440213-60440232 | Msa0779270:CDS | 30.0% | |
| GTTAGGAATATATATGTGGA+AGG | - | chr5_2:60440366-60440385 | None:intergenic | 30.0% | |
| !! | TGTAAAGATTTATTGGCTCA+AGG | + | chr5_2:60440467-60440486 | Msa0779270:CDS | 30.0% |
| !! | TGCTATTACTTTTACTCCAA+AGG | + | chr5_2:60440574-60440593 | Msa0779270:CDS | 30.0% |
| TTAATTGAAGAAGACATAGG+AGG | + | chr5_2:60440730-60440749 | Msa0779270:CDS | 30.0% | |
| ACACTCAAAGATATGGCAAT+TGG | + | chr5_2:60439968-60439987 | Msa0779270:exon | 35.0% | |
| CACTCAAAGATATGGCAATT+GGG | + | chr5_2:60439969-60439988 | Msa0779270:exon | 35.0% | |
| AGATATGGCAATTGGGATAA+TGG | + | chr5_2:60439976-60439995 | Msa0779270:exon | 35.0% | |
| GTACATGTTGTGAAAGCTAA+AGG | + | chr5_2:60440001-60440020 | Msa0779270:CDS | 35.0% | |
| ! | CAAAGAAACAAGTGCTATTG+AGG | - | chr5_2:60440027-60440046 | None:intergenic | 35.0% |
| ! | CTCAATAGCACTTGTTTCTT+TGG | + | chr5_2:60440025-60440044 | Msa0779270:CDS | 35.0% |
| GTAGAGGAAGAAATCATGTA+TGG | + | chr5_2:60440212-60440231 | Msa0779270:CDS | 35.0% | |
| ! | TTTTCTGCTGATGACTTCAT+TGG | + | chr5_2:60440319-60440338 | Msa0779270:CDS | 35.0% |
| CTTTGTTGGAATTCATTCAC+AGG | + | chr5_2:60440696-60440715 | Msa0779270:intron | 35.0% | |
| ! | AAAAACAACAAGCATCGTAG+AGG | - | chr5_2:60440926-60440945 | None:intergenic | 35.0% |
| ACACTCAAAGATATGGCAAT+TGG | + | chr5_2:60439968-60439987 | Msa0779270:exon | 35.0% | |
| CACTCAAAGATATGGCAATT+GGG | + | chr5_2:60439969-60439988 | Msa0779270:exon | 35.0% | |
| AGATATGGCAATTGGGATAA+TGG | + | chr5_2:60439976-60439995 | Msa0779270:exon | 35.0% | |
| GTACATGTTGTGAAAGCTAA+AGG | + | chr5_2:60440001-60440020 | Msa0779270:CDS | 35.0% | |
| ! | CAAAGAAACAAGTGCTATTG+AGG | - | chr5_2:60440027-60440046 | None:intergenic | 35.0% |
| ! | CTCAATAGCACTTGTTTCTT+TGG | + | chr5_2:60440025-60440044 | Msa0779270:CDS | 35.0% |
| GTAGAGGAAGAAATCATGTA+TGG | + | chr5_2:60440212-60440231 | Msa0779270:CDS | 35.0% | |
| ! | TTTTCTGCTGATGACTTCAT+TGG | + | chr5_2:60440319-60440338 | Msa0779270:CDS | 35.0% |
| CTTTGTTGGAATTCATTCAC+AGG | + | chr5_2:60440696-60440715 | Msa0779270:intron | 35.0% | |
| ! | AAAAACAACAAGCATCGTAG+AGG | - | chr5_2:60440926-60440945 | None:intergenic | 35.0% |
| ! | GTAGCTTAGCAACTCCATTT+TGG | - | chr5_2:60440496-60440515 | None:intergenic | 40.0% |
| ACAACTCTATACTTGAGAGG+TGG | - | chr5_2:60440518-60440537 | None:intergenic | 40.0% | |
| CGAACAACTCTATACTTGAG+AGG | - | chr5_2:60440521-60440540 | None:intergenic | 40.0% | |
| CAATCTCTCCACGATAAGAT+TGG | - | chr5_2:60440550-60440569 | None:intergenic | 40.0% | |
| TGTTGGAATTCATTCACAGG+TGG | + | chr5_2:60440699-60440718 | Msa0779270:intron | 40.0% | |
| AATTCATTCACAGGTGGAAG+AGG | + | chr5_2:60440705-60440724 | Msa0779270:intron | 40.0% | |
| TTGAAGAAGACATAGGAGGA+TGG | + | chr5_2:60440734-60440753 | Msa0779270:CDS | 40.0% | |
| ! | GTAGCTTAGCAACTCCATTT+TGG | - | chr5_2:60440496-60440515 | None:intergenic | 40.0% |
| ACAACTCTATACTTGAGAGG+TGG | - | chr5_2:60440518-60440537 | None:intergenic | 40.0% | |
| CGAACAACTCTATACTTGAG+AGG | - | chr5_2:60440521-60440540 | None:intergenic | 40.0% | |
| CAATCTCTCCACGATAAGAT+TGG | - | chr5_2:60440550-60440569 | None:intergenic | 40.0% | |
| TGTTGGAATTCATTCACAGG+TGG | + | chr5_2:60440699-60440718 | Msa0779270:intron | 40.0% | |
| AATTCATTCACAGGTGGAAG+AGG | + | chr5_2:60440705-60440724 | Msa0779270:intron | 40.0% | |
| TTGAAGAAGACATAGGAGGA+TGG | + | chr5_2:60440734-60440753 | Msa0779270:CDS | 40.0% | |
| ! | AATACCAAGGCCAAGAGCAT+AGG | + | chr5_2:60440173-60440192 | Msa0779270:CDS | 45.0% |
| TTCCTCTACCTTTAGCCACA+CGG | - | chr5_2:60440201-60440220 | None:intergenic | 45.0% | |
| !! | TGGAAGGCATTAGTCTTACG+TGG | - | chr5_2:60440350-60440369 | None:intergenic | 45.0% |
| ! | TTGGCTCAAGGTGTCCAAAA+TGG | + | chr5_2:60440479-60440498 | Msa0779270:CDS | 45.0% |
| ! | AATACCAAGGCCAAGAGCAT+AGG | + | chr5_2:60440173-60440192 | Msa0779270:CDS | 45.0% |
| TTCCTCTACCTTTAGCCACA+CGG | - | chr5_2:60440201-60440220 | None:intergenic | 45.0% | |
| !! | TGGAAGGCATTAGTCTTACG+TGG | - | chr5_2:60440350-60440369 | None:intergenic | 45.0% |
| ! | TTGGCTCAAGGTGTCCAAAA+TGG | + | chr5_2:60440479-60440498 | Msa0779270:CDS | 45.0% |
| !!! | TATTTTTACTATATTAATAT+AGG | + | chr5_2:60440121-60440140 | Msa0779270:intron | 5.0% |
| !!! | TATTTTTACTATATTAATAT+AGG | + | chr5_2:60440121-60440140 | Msa0779270:intron | 5.0% |
| CGTGCAGACCAATCTTATCG+TGG | + | chr5_2:60440539-60440558 | Msa0779270:CDS | 50.0% | |
| CGTGCAGACCAATCTTATCG+TGG | + | chr5_2:60440539-60440558 | Msa0779270:CDS | 50.0% | |
| CATAGGAGCCGTGTGGCTAA+AGG | + | chr5_2:60440190-60440209 | Msa0779270:CDS | 55.0% | |
| AGCCGTGTGGCTAAAGGTAG+AGG | + | chr5_2:60440196-60440215 | Msa0779270:CDS | 55.0% | |
| CATAGGAGCCGTGTGGCTAA+AGG | + | chr5_2:60440190-60440209 | Msa0779270:CDS | 55.0% | |
| AGCCGTGTGGCTAAAGGTAG+AGG | + | chr5_2:60440196-60440215 | Msa0779270:CDS | 55.0% | |
| GGCTCCTATGCTCTTGGCCT+TGG | - | chr5_2:60440180-60440199 | None:intergenic | 60.0% | |
| CCACACGGCTCCTATGCTCT+TGG | - | chr5_2:60440186-60440205 | None:intergenic | 60.0% | |
| ! | CCAAGAGCATAGGAGCCGTG+TGG | + | chr5_2:60440183-60440202 | Msa0779270:CDS | 60.0% |
| GGCTCCTATGCTCTTGGCCT+TGG | - | chr5_2:60440180-60440199 | None:intergenic | 60.0% | |
| CCACACGGCTCCTATGCTCT+TGG | - | chr5_2:60440186-60440205 | None:intergenic | 60.0% | |
| ! | CCAAGAGCATAGGAGCCGTG+TGG | + | chr5_2:60440183-60440202 | Msa0779270:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 60439894 | 60440992 | 60439894 | ID=Msa0779270;Name=Msa0779270 |
| chr5_2 | mRNA | 60439894 | 60440992 | 60439894 | ID=Msa0779270-mRNA-1;Parent=Msa0779270;Name=Msa0779270-mRNA-1;_AED=0.30;_eAED=0.30;_QI=86|1|1|1|1|1|4|209|158 |
| chr5_2 | exon | 60439894 | 60440046 | 60439894 | ID=Msa0779270-mRNA-1:exon:17726;Parent=Msa0779270-mRNA-1 |
| chr5_2 | exon | 60440143 | 60440350 | 60440143 | ID=Msa0779270-mRNA-1:exon:17727;Parent=Msa0779270-mRNA-1 |
| chr5_2 | exon | 60440460 | 60440595 | 60440460 | ID=Msa0779270-mRNA-1:exon:17728;Parent=Msa0779270-mRNA-1 |
| chr5_2 | exon | 60440718 | 60440992 | 60440718 | ID=Msa0779270-mRNA-1:exon:17729;Parent=Msa0779270-mRNA-1 |
| chr5_2 | five_prime_UTR | 60439894 | 60439979 | 60439894 | ID=Msa0779270-mRNA-1:five_prime_utr;Parent=Msa0779270-mRNA-1 |
| chr5_2 | CDS | 60439980 | 60440046 | 60439980 | ID=Msa0779270-mRNA-1:cds;Parent=Msa0779270-mRNA-1 |
| chr5_2 | CDS | 60440143 | 60440350 | 60440143 | ID=Msa0779270-mRNA-1:cds;Parent=Msa0779270-mRNA-1 |
| chr5_2 | CDS | 60440460 | 60440595 | 60440460 | ID=Msa0779270-mRNA-1:cds;Parent=Msa0779270-mRNA-1 |
| chr5_2 | CDS | 60440718 | 60440783 | 60440718 | ID=Msa0779270-mRNA-1:cds;Parent=Msa0779270-mRNA-1 |
| chr5_2 | three_prime_UTR | 60440784 | 60440992 | 60440784 | ID=Msa0779270-mRNA-1:three_prime_utr;Parent=Msa0779270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
