Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737500 | XP_003616408.2 | 97.484 | 159 | 3 | 1 | 1 | 158 | 1 | 159 | 4.10e-110 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737500 | sp|Q0JHU5|ERG1_ORYSJ | 44.079 | 152 | 83 | 1 | 4 | 153 | 5 | 156 | 9.49e-46 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737500 | G7KBR3 | 97.484 | 159 | 3 | 1 | 1 | 158 | 1 | 159 | 1.96e-110 | 320 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054310 | Msa0737500 | 0.800787 | 1.223362e-48 | -8.615850e-47 |
| Msa0737500 | Msa0737520 | 0.866028 | 3.844920e-65 | -8.615850e-47 |
| Msa0737500 | Msa0779270 | 0.817854 | 2.656347e-52 | -8.615850e-47 |
| Msa0737500 | Msa0779280 | 0.832281 | 1.033828e-55 | -8.615850e-47 |
| Msa0737500 | Msa0816670 | 0.835652 | 1.481133e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737500 | MtrunA17_Chr5g0435261 | 97.484 | 159 | 3 | 1 | 1 | 158 | 1 | 159 | 3.77e-114 | 320 |
| Msa0737500 | MtrunA17_Chr5g0435251 | 60.645 | 155 | 59 | 2 | 1 | 155 | 1 | 153 | 1.56e-59 | 181 |
| Msa0737500 | MtrunA17_Chr8g0350031 | 42.038 | 157 | 76 | 5 | 1 | 154 | 1 | 145 | 4.70e-35 | 119 |
| Msa0737500 | MtrunA17_Chr8g0350021 | 40.127 | 157 | 79 | 5 | 1 | 154 | 1 | 145 | 1.15e-32 | 113 |
| Msa0737500 | MtrunA17_Chr8g0348941 | 31.944 | 144 | 96 | 2 | 1 | 143 | 1 | 143 | 4.71e-19 | 79.3 |
| Msa0737500 | MtrunA17_Chr1g0147471 | 43.750 | 64 | 32 | 1 | 27 | 90 | 2 | 61 | 3.33e-15 | 66.2 |
| Msa0737500 | MtrunA17_Chr2g0290721 | 29.365 | 126 | 82 | 3 | 24 | 149 | 20 | 138 | 5.62e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737500 | AT3G55470.2 | 45.098 | 153 | 83 | 1 | 1 | 153 | 1 | 152 | 6.01e-44 | 142 |
| Msa0737500 | AT3G55470.1 | 44.805 | 154 | 83 | 2 | 1 | 153 | 1 | 153 | 4.16e-42 | 138 |
| Msa0737500 | AT1G63220.1 | 39.623 | 159 | 80 | 6 | 1 | 155 | 1 | 147 | 8.05e-28 | 101 |
| Msa0737500 | AT1G63220.2 | 35.849 | 159 | 72 | 6 | 1 | 155 | 1 | 133 | 5.51e-21 | 83.6 |
| Msa0737500 | AT4G00467.2 | 32.353 | 136 | 87 | 2 | 1 | 134 | 1 | 133 | 7.06e-20 | 82.0 |
| Msa0737500 | AT4G00467.1 | 32.353 | 136 | 87 | 2 | 1 | 134 | 1 | 133 | 1.08e-19 | 82.0 |
| Msa0737500 | AT4G34150.1 | 34.694 | 98 | 57 | 3 | 5 | 101 | 11 | 102 | 1.33e-12 | 63.9 |
Find 35 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTATTGTAAAGATTTAT+TGG | 0.151708 | 5_1:+54745475 | Msa0737500:CDS |
| CTCAATAACACTTGTTTCTT+TGG | 0.179953 | 5_1:+54745041 | Msa0737500:CDS |
| TTCTTTCTAGCAAGCATTAA+AGG | 0.192764 | 5_1:+54745887 | Msa0737500:three_prime_UTR |
| TTGGCTCAAGGTGTTCAAAA+TGG | 0.301303 | 5_1:+54745494 | Msa0737500:CDS |
| AGATATGGCAATTGGGATAA+TGG | 0.328865 | 5_1:+54744992 | Msa0737500:exon |
| CAAAGTCATTCTCAAAATAA+TGG | 0.344213 | 5_1:+54745300 | Msa0737500:CDS |
| ACACTTAAAGATATGGCAAT+TGG | 0.360757 | 5_1:+54744984 | Msa0737500:exon |
| TTCTCATACACTTAAAGATA+TGG | 0.438648 | 5_1:+54744977 | Msa0737500:exon |
| CACTTAAAGATATGGCAATT+GGG | 0.452310 | 5_1:+54744985 | Msa0737500:exon |
| GCATAGGAGCCGTGTGGCTA+AGG | 0.463549 | 5_1:+54745204 | Msa0737500:CDS |
| CATAAATGTATGTTGTTACA+TGG | 0.468329 | 5_1:+54745910 | Msa0737500:three_prime_UTR |
| CAATCTCTCCACGATAAGAT+TGG | 0.475600 | 5_1:-54745562 | None:intergenic |
| GTACATCTTGTGAAAGCAAA+AGG | 0.483814 | 5_1:+54745017 | Msa0737500:CDS |
| TTGGTATTGTATCAAAACAT+AGG | 0.499452 | 5_1:-54745173 | None:intergenic |
| GTAGAGGCAGAAATCATGTA+TGG | 0.500046 | 5_1:+54745227 | Msa0737500:CDS |
| AGCCGTGTGGCTAAGGGTAG+AGG | 0.500839 | 5_1:+54745211 | Msa0737500:CDS |
| CAAAGAAACAAGTGTTATTG+AGG | 0.514718 | 5_1:-54745040 | None:intergenic |
| TGTAAAGATTTATTGGCTCA+AGG | 0.515900 | 5_1:+54745482 | Msa0737500:CDS |
| AATTCATTCACAGGTGGAAG+AGG | 0.517863 | 5_1:+54745720 | Msa0737500:intron |
| GGCTCCTATGCTCTTGACCT+TGG | 0.540922 | 5_1:-54745192 | None:intergenic |
| ATATTAATATATAGGTGGAA+TGG | 0.546882 | 5_1:+54745144 | Msa0737500:intron |
| TGGTATTGTATCAAAACATA+GGG | 0.548025 | 5_1:-54745172 | None:intergenic |
| TTGAAGAAGACATAGGAGGA+TGG | 0.550578 | 5_1:+54745749 | Msa0737500:CDS |
| CATAGGAGCCGTGTGGCTAA+GGG | 0.562336 | 5_1:+54745205 | Msa0737500:CDS |
| GAATTAATTGAAGAAGACAT+AGG | 0.564791 | 5_1:+54745742 | Msa0737500:CDS |
| ACAGAAAACAAGCATCATAG+AGG | 0.582943 | 5_1:-54745935 | None:intergenic |
| ATGTTCAAAGTAGAAAACAT+TGG | 0.586845 | 5_1:+54745262 | Msa0737500:CDS |
| AATACCAAGGTCAAGAGCAT+AGG | 0.590229 | 5_1:+54745188 | Msa0737500:CDS |
| TGCCTCTACCCTTAGCCACA+CGG | 0.590713 | 5_1:-54745213 | None:intergenic |
| CGAACAACTCTATACTTGAG+AGG | 0.601631 | 5_1:-54745533 | None:intergenic |
| TTAATTGAAGAAGACATAGG+AGG | 0.621683 | 5_1:+54745745 | Msa0737500:CDS |
| TAGAGGCAGAAATCATGTAT+GGG | 0.623868 | 5_1:+54745228 | Msa0737500:CDS |
| CGTGCAGACCAATCTTATCG+TGG | 0.690565 | 5_1:+54745554 | Msa0737500:CDS |
| ACAACTCTATACTTGAGAGG+TGG | 0.693150 | 5_1:-54745530 | None:intergenic |
| TCAAGAGCATAGGAGCCGTG+TGG | 0.747555 | 5_1:+54745198 | Msa0737500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTAATTAATTACCTT+TGG | - | chr5_1:54745608-54745627 | None:intergenic | 10.0% |
| !! | ATATATTAATTAATTACCTT+TGG | - | chr5_1:54745608-54745627 | None:intergenic | 10.0% |
| !!! | TTTTTTGAATTTAAATCTTC+AGG | + | chr5_1:54744938-54744957 | Msa0737500:five_prime_UTR | 15.0% |
| !!! | TTTTTGAATTTAAATCTTCA+GGG | + | chr5_1:54744939-54744958 | Msa0737500:five_prime_UTR | 15.0% |
| !! | TTACTATATTAATATATAGG+TGG | + | chr5_1:54745139-54745158 | Msa0737500:intron | 15.0% |
| !! | AATCTATTGTAAAGATTTAT+TGG | + | chr5_1:54745475-54745494 | Msa0737500:CDS | 15.0% |
| !!! | TTCACATTTTATTTTTGTTA+AGG | + | chr5_1:54745627-54745646 | Msa0737500:intron | 15.0% |
| !!! | TTTTTTGAATTTAAATCTTC+AGG | + | chr5_1:54744938-54744957 | Msa0737500:five_prime_UTR | 15.0% |
| !!! | TTTTTGAATTTAAATCTTCA+GGG | + | chr5_1:54744939-54744958 | Msa0737500:five_prime_UTR | 15.0% |
| !! | TTACTATATTAATATATAGG+TGG | + | chr5_1:54745139-54745158 | Msa0737500:intron | 15.0% |
| !! | AATCTATTGTAAAGATTTAT+TGG | + | chr5_1:54745475-54745494 | Msa0737500:CDS | 15.0% |
| !!! | TTCACATTTTATTTTTGTTA+AGG | + | chr5_1:54745627-54745646 | Msa0737500:intron | 15.0% |
| !! | TATGATATGATATGATACAA+GGG | - | chr5_1:54745107-54745126 | None:intergenic | 20.0% |
| !! | ATATGATATGATATGATACA+AGG | - | chr5_1:54745108-54745127 | None:intergenic | 20.0% |
| !! | ATATTAATATATAGGTGGAA+TGG | + | chr5_1:54745144-54745163 | Msa0737500:intron | 20.0% |
| !! | AAAAATGAGACATTATTGTT+AGG | - | chr5_1:54745398-54745417 | None:intergenic | 20.0% |
| !! | TTTACAATAGATTCTGTTTA+AGG | - | chr5_1:54745468-54745487 | None:intergenic | 20.0% |
| !! | CATGTAACAATATATAGTTA+TGG | + | chr5_1:54745650-54745669 | Msa0737500:intron | 20.0% |
| !!! | AGTTGATTATTTTTCTTTGT+TGG | + | chr5_1:54745697-54745716 | Msa0737500:intron | 20.0% |
| !!! | ACTACTTTTAGTTTACAAAT+GGG | - | chr5_1:54745817-54745836 | None:intergenic | 20.0% |
| !!! | AACTACTTTTAGTTTACAAA+TGG | - | chr5_1:54745818-54745837 | None:intergenic | 20.0% |
| !! | TATGATATGATATGATACAA+GGG | - | chr5_1:54745107-54745126 | None:intergenic | 20.0% |
| !! | ATATGATATGATATGATACA+AGG | - | chr5_1:54745108-54745127 | None:intergenic | 20.0% |
| !! | ATATTAATATATAGGTGGAA+TGG | + | chr5_1:54745144-54745163 | Msa0737500:intron | 20.0% |
| !! | AAAAATGAGACATTATTGTT+AGG | - | chr5_1:54745398-54745417 | None:intergenic | 20.0% |
| !! | TTTACAATAGATTCTGTTTA+AGG | - | chr5_1:54745468-54745487 | None:intergenic | 20.0% |
| !! | CATGTAACAATATATAGTTA+TGG | + | chr5_1:54745650-54745669 | Msa0737500:intron | 20.0% |
| !!! | AGTTGATTATTTTTCTTTGT+TGG | + | chr5_1:54745697-54745716 | Msa0737500:intron | 20.0% |
| !!! | ACTACTTTTAGTTTACAAAT+GGG | - | chr5_1:54745817-54745836 | None:intergenic | 20.0% |
| !!! | AACTACTTTTAGTTTACAAA+TGG | - | chr5_1:54745818-54745837 | None:intergenic | 20.0% |
| ! | TTCTCATACACTTAAAGATA+TGG | + | chr5_1:54744977-54744996 | Msa0737500:exon | 25.0% |
| ! | GGCAAAATATATGAATGTAA+GGG | - | chr5_1:54745086-54745105 | None:intergenic | 25.0% |
| ! | TGGTATTGTATCAAAACATA+GGG | - | chr5_1:54745175-54745194 | None:intergenic | 25.0% |
| ! | TTGGTATTGTATCAAAACAT+AGG | - | chr5_1:54745176-54745195 | None:intergenic | 25.0% |
| !!! | TATGTTTTGATACAATACCA+AGG | + | chr5_1:54745175-54745194 | Msa0737500:CDS | 25.0% |
| ! | ATGTTCAAAGTAGAAAACAT+TGG | + | chr5_1:54745262-54745281 | Msa0737500:CDS | 25.0% |
| ! | CAAAGTCATTCTCAAAATAA+TGG | + | chr5_1:54745300-54745319 | Msa0737500:CDS | 25.0% |
| !! | TATTGTTAGGAGTATATATG+TGG | - | chr5_1:54745385-54745404 | None:intergenic | 25.0% |
| ! | GAATTAATTGAAGAAGACAT+AGG | + | chr5_1:54745742-54745761 | Msa0737500:CDS | 25.0% |
| ! | CATAAATGTATGTTGTTACA+TGG | + | chr5_1:54745910-54745929 | Msa0737500:three_prime_UTR | 25.0% |
| ! | TTCTCATACACTTAAAGATA+TGG | + | chr5_1:54744977-54744996 | Msa0737500:exon | 25.0% |
| ! | GGCAAAATATATGAATGTAA+GGG | - | chr5_1:54745086-54745105 | None:intergenic | 25.0% |
| ! | TGGTATTGTATCAAAACATA+GGG | - | chr5_1:54745175-54745194 | None:intergenic | 25.0% |
| ! | TTGGTATTGTATCAAAACAT+AGG | - | chr5_1:54745176-54745195 | None:intergenic | 25.0% |
| !!! | TATGTTTTGATACAATACCA+AGG | + | chr5_1:54745175-54745194 | Msa0737500:CDS | 25.0% |
| ! | ATGTTCAAAGTAGAAAACAT+TGG | + | chr5_1:54745262-54745281 | Msa0737500:CDS | 25.0% |
| ! | CAAAGTCATTCTCAAAATAA+TGG | + | chr5_1:54745300-54745319 | Msa0737500:CDS | 25.0% |
| !! | TATTGTTAGGAGTATATATG+TGG | - | chr5_1:54745385-54745404 | None:intergenic | 25.0% |
| ! | GAATTAATTGAAGAAGACAT+AGG | + | chr5_1:54745742-54745761 | Msa0737500:CDS | 25.0% |
| ! | CATAAATGTATGTTGTTACA+TGG | + | chr5_1:54745910-54745929 | Msa0737500:three_prime_UTR | 25.0% |
| ACACTTAAAGATATGGCAAT+TGG | + | chr5_1:54744984-54745003 | Msa0737500:exon | 30.0% | |
| CACTTAAAGATATGGCAATT+GGG | + | chr5_1:54744985-54745004 | Msa0737500:exon | 30.0% | |
| ! | CAAAGAAACAAGTGTTATTG+AGG | - | chr5_1:54745043-54745062 | None:intergenic | 30.0% |
| ! | CTCAATAACACTTGTTTCTT+TGG | + | chr5_1:54745041-54745060 | Msa0737500:CDS | 30.0% |
| GGGCAAAATATATGAATGTA+AGG | - | chr5_1:54745087-54745106 | None:intergenic | 30.0% | |
| !! | TGTAAAGATTTATTGGCTCA+AGG | + | chr5_1:54745482-54745501 | Msa0737500:CDS | 30.0% |
| !! | TGCTATTACTTTTACTCCAA+AGG | + | chr5_1:54745589-54745608 | Msa0737500:CDS | 30.0% |
| TTAATTGAAGAAGACATAGG+AGG | + | chr5_1:54745745-54745764 | Msa0737500:CDS | 30.0% | |
| ! | TTCTTTCTAGCAAGCATTAA+AGG | + | chr5_1:54745887-54745906 | Msa0737500:three_prime_UTR | 30.0% |
| ACACTTAAAGATATGGCAAT+TGG | + | chr5_1:54744984-54745003 | Msa0737500:exon | 30.0% | |
| CACTTAAAGATATGGCAATT+GGG | + | chr5_1:54744985-54745004 | Msa0737500:exon | 30.0% | |
| ! | CAAAGAAACAAGTGTTATTG+AGG | - | chr5_1:54745043-54745062 | None:intergenic | 30.0% |
| ! | CTCAATAACACTTGTTTCTT+TGG | + | chr5_1:54745041-54745060 | Msa0737500:CDS | 30.0% |
| GGGCAAAATATATGAATGTA+AGG | - | chr5_1:54745087-54745106 | None:intergenic | 30.0% | |
| !! | TGTAAAGATTTATTGGCTCA+AGG | + | chr5_1:54745482-54745501 | Msa0737500:CDS | 30.0% |
| !! | TGCTATTACTTTTACTCCAA+AGG | + | chr5_1:54745589-54745608 | Msa0737500:CDS | 30.0% |
| TTAATTGAAGAAGACATAGG+AGG | + | chr5_1:54745745-54745764 | Msa0737500:CDS | 30.0% | |
| ! | TTCTTTCTAGCAAGCATTAA+AGG | + | chr5_1:54745887-54745906 | Msa0737500:three_prime_UTR | 30.0% |
| AGATATGGCAATTGGGATAA+TGG | + | chr5_1:54744992-54745011 | Msa0737500:exon | 35.0% | |
| GTACATCTTGTGAAAGCAAA+AGG | + | chr5_1:54745017-54745036 | Msa0737500:CDS | 35.0% | |
| TAGAGGCAGAAATCATGTAT+GGG | + | chr5_1:54745228-54745247 | Msa0737500:CDS | 35.0% | |
| ! | TTTTCTGCTGATGACTTCAT+TGG | + | chr5_1:54745334-54745353 | Msa0737500:CDS | 35.0% |
| ! | GTTAGGAGTATATATGTGGA+AGG | - | chr5_1:54745381-54745400 | None:intergenic | 35.0% |
| CTTTGTTGGAATTCATTCAC+AGG | + | chr5_1:54745711-54745730 | Msa0737500:intron | 35.0% | |
| ACAGAAAACAAGCATCATAG+AGG | - | chr5_1:54745938-54745957 | None:intergenic | 35.0% | |
| AGATATGGCAATTGGGATAA+TGG | + | chr5_1:54744992-54745011 | Msa0737500:exon | 35.0% | |
| GTACATCTTGTGAAAGCAAA+AGG | + | chr5_1:54745017-54745036 | Msa0737500:CDS | 35.0% | |
| TAGAGGCAGAAATCATGTAT+GGG | + | chr5_1:54745228-54745247 | Msa0737500:CDS | 35.0% | |
| ! | TTTTCTGCTGATGACTTCAT+TGG | + | chr5_1:54745334-54745353 | Msa0737500:CDS | 35.0% |
| ! | GTTAGGAGTATATATGTGGA+AGG | - | chr5_1:54745381-54745400 | None:intergenic | 35.0% |
| CTTTGTTGGAATTCATTCAC+AGG | + | chr5_1:54745711-54745730 | Msa0737500:intron | 35.0% | |
| ACAGAAAACAAGCATCATAG+AGG | - | chr5_1:54745938-54745957 | None:intergenic | 35.0% | |
| ! | AATACCAAGGTCAAGAGCAT+AGG | + | chr5_1:54745188-54745207 | Msa0737500:CDS | 40.0% |
| GTAGAGGCAGAAATCATGTA+TGG | + | chr5_1:54745227-54745246 | Msa0737500:CDS | 40.0% | |
| ! | TTGGCTCAAGGTGTTCAAAA+TGG | + | chr5_1:54745494-54745513 | Msa0737500:CDS | 40.0% |
| ACAACTCTATACTTGAGAGG+TGG | - | chr5_1:54745533-54745552 | None:intergenic | 40.0% | |
| CGAACAACTCTATACTTGAG+AGG | - | chr5_1:54745536-54745555 | None:intergenic | 40.0% | |
| CAATCTCTCCACGATAAGAT+TGG | - | chr5_1:54745565-54745584 | None:intergenic | 40.0% | |
| TGTTGGAATTCATTCACAGG+TGG | + | chr5_1:54745714-54745733 | Msa0737500:intron | 40.0% | |
| AATTCATTCACAGGTGGAAG+AGG | + | chr5_1:54745720-54745739 | Msa0737500:intron | 40.0% | |
| TTGAAGAAGACATAGGAGGA+TGG | + | chr5_1:54745749-54745768 | Msa0737500:CDS | 40.0% | |
| ! | AATACCAAGGTCAAGAGCAT+AGG | + | chr5_1:54745188-54745207 | Msa0737500:CDS | 40.0% |
| GTAGAGGCAGAAATCATGTA+TGG | + | chr5_1:54745227-54745246 | Msa0737500:CDS | 40.0% | |
| ! | TTGGCTCAAGGTGTTCAAAA+TGG | + | chr5_1:54745494-54745513 | Msa0737500:CDS | 40.0% |
| ACAACTCTATACTTGAGAGG+TGG | - | chr5_1:54745533-54745552 | None:intergenic | 40.0% | |
| CGAACAACTCTATACTTGAG+AGG | - | chr5_1:54745536-54745555 | None:intergenic | 40.0% | |
| CAATCTCTCCACGATAAGAT+TGG | - | chr5_1:54745565-54745584 | None:intergenic | 40.0% | |
| TGTTGGAATTCATTCACAGG+TGG | + | chr5_1:54745714-54745733 | Msa0737500:intron | 40.0% | |
| AATTCATTCACAGGTGGAAG+AGG | + | chr5_1:54745720-54745739 | Msa0737500:intron | 40.0% | |
| TTGAAGAAGACATAGGAGGA+TGG | + | chr5_1:54745749-54745768 | Msa0737500:CDS | 40.0% | |
| !! | TGGAAGGCATTAGTCTTACG+TGG | - | chr5_1:54745365-54745384 | None:intergenic | 45.0% |
| !! | TGGAAGGCATTAGTCTTACG+TGG | - | chr5_1:54745365-54745384 | None:intergenic | 45.0% |
| !!! | TTTTTACTATATTAATATAT+AGG | + | chr5_1:54745136-54745155 | Msa0737500:intron | 5.0% |
| !!! | TTTTTACTATATTAATATAT+AGG | + | chr5_1:54745136-54745155 | Msa0737500:intron | 5.0% |
| CGTGCAGACCAATCTTATCG+TGG | + | chr5_1:54745554-54745573 | Msa0737500:CDS | 50.0% | |
| CGTGCAGACCAATCTTATCG+TGG | + | chr5_1:54745554-54745573 | Msa0737500:CDS | 50.0% | |
| GGCTCCTATGCTCTTGACCT+TGG | - | chr5_1:54745195-54745214 | None:intergenic | 55.0% | |
| ! | TCAAGAGCATAGGAGCCGTG+TGG | + | chr5_1:54745198-54745217 | Msa0737500:CDS | 55.0% |
| CATAGGAGCCGTGTGGCTAA+GGG | + | chr5_1:54745205-54745224 | Msa0737500:CDS | 55.0% | |
| TGCCTCTACCCTTAGCCACA+CGG | - | chr5_1:54745216-54745235 | None:intergenic | 55.0% | |
| GGCTCCTATGCTCTTGACCT+TGG | - | chr5_1:54745195-54745214 | None:intergenic | 55.0% | |
| ! | TCAAGAGCATAGGAGCCGTG+TGG | + | chr5_1:54745198-54745217 | Msa0737500:CDS | 55.0% |
| CATAGGAGCCGTGTGGCTAA+GGG | + | chr5_1:54745205-54745224 | Msa0737500:CDS | 55.0% | |
| TGCCTCTACCCTTAGCCACA+CGG | - | chr5_1:54745216-54745235 | None:intergenic | 55.0% | |
| GCATAGGAGCCGTGTGGCTA+AGG | + | chr5_1:54745204-54745223 | Msa0737500:CDS | 60.0% | |
| AGCCGTGTGGCTAAGGGTAG+AGG | + | chr5_1:54745211-54745230 | Msa0737500:CDS | 60.0% | |
| GCATAGGAGCCGTGTGGCTA+AGG | + | chr5_1:54745204-54745223 | Msa0737500:CDS | 60.0% | |
| AGCCGTGTGGCTAAGGGTAG+AGG | + | chr5_1:54745211-54745230 | Msa0737500:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 54744910 | 54746001 | 54744910 | ID=Msa0737500;Name=Msa0737500 |
| chr5_1 | mRNA | 54744910 | 54746001 | 54744910 | ID=Msa0737500-mRNA-1;Parent=Msa0737500;Name=Msa0737500-mRNA-1;_AED=0.05;_eAED=0.05;_QI=86|1|1|1|1|1|4|203|158 |
| chr5_1 | exon | 54744910 | 54745062 | 54744910 | ID=Msa0737500-mRNA-1:exon:15353;Parent=Msa0737500-mRNA-1 |
| chr5_1 | exon | 54745158 | 54745365 | 54745158 | ID=Msa0737500-mRNA-1:exon:15354;Parent=Msa0737500-mRNA-1 |
| chr5_1 | exon | 54745475 | 54745610 | 54745475 | ID=Msa0737500-mRNA-1:exon:15355;Parent=Msa0737500-mRNA-1 |
| chr5_1 | exon | 54745733 | 54746001 | 54745733 | ID=Msa0737500-mRNA-1:exon:15356;Parent=Msa0737500-mRNA-1 |
| chr5_1 | five_prime_UTR | 54744910 | 54744995 | 54744910 | ID=Msa0737500-mRNA-1:five_prime_utr;Parent=Msa0737500-mRNA-1 |
| chr5_1 | CDS | 54744996 | 54745062 | 54744996 | ID=Msa0737500-mRNA-1:cds;Parent=Msa0737500-mRNA-1 |
| chr5_1 | CDS | 54745158 | 54745365 | 54745158 | ID=Msa0737500-mRNA-1:cds;Parent=Msa0737500-mRNA-1 |
| chr5_1 | CDS | 54745475 | 54745610 | 54745475 | ID=Msa0737500-mRNA-1:cds;Parent=Msa0737500-mRNA-1 |
| chr5_1 | CDS | 54745733 | 54745798 | 54745733 | ID=Msa0737500-mRNA-1:cds;Parent=Msa0737500-mRNA-1 |
| chr5_1 | three_prime_UTR | 54745799 | 54746001 | 54745799 | ID=Msa0737500-mRNA-1:three_prime_utr;Parent=Msa0737500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
