Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779280 | XP_003616408.2 | 98.113 | 159 | 2 | 1 | 1 | 158 | 1 | 159 | 6.63e-111 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779280 | sp|Q0JHU5|ERG1_ORYSJ | 44.079 | 152 | 83 | 1 | 4 | 153 | 5 | 156 | 9.70e-46 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779280 | G7KBR3 | 98.113 | 159 | 2 | 1 | 1 | 158 | 1 | 159 | 3.17e-111 | 322 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0100070 | Msa0779280 | 0.800768 | 1.234105e-48 | -8.615850e-47 |
| Msa0737500 | Msa0779280 | 0.832281 | 1.033828e-55 | -8.615850e-47 |
| Msa0737520 | Msa0779280 | 0.825921 | 3.601424e-54 | -8.615850e-47 |
| Msa0779270 | Msa0779280 | 0.985439 | 1.434310e-163 | -8.615850e-47 |
| Msa0779280 | Msa0816670 | 0.815840 | 7.522050e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779280 | MtrunA17_Chr5g0435261 | 98.113 | 159 | 2 | 1 | 1 | 158 | 1 | 159 | 6.10e-115 | 322 |
| Msa0779280 | MtrunA17_Chr5g0435251 | 60.645 | 155 | 59 | 2 | 1 | 155 | 1 | 153 | 1.29e-59 | 182 |
| Msa0779280 | MtrunA17_Chr8g0350031 | 42.675 | 157 | 75 | 5 | 1 | 154 | 1 | 145 | 1.35e-35 | 120 |
| Msa0779280 | MtrunA17_Chr8g0350021 | 40.127 | 157 | 79 | 5 | 1 | 154 | 1 | 145 | 2.00e-32 | 112 |
| Msa0779280 | MtrunA17_Chr8g0348941 | 31.944 | 144 | 96 | 2 | 1 | 143 | 1 | 143 | 2.49e-19 | 80.1 |
| Msa0779280 | MtrunA17_Chr1g0147471 | 43.750 | 64 | 32 | 1 | 27 | 90 | 2 | 61 | 5.30e-16 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779280 | AT3G55470.2 | 45.098 | 153 | 83 | 1 | 1 | 153 | 1 | 152 | 5.88e-44 | 142 |
| Msa0779280 | AT3G55470.1 | 44.805 | 154 | 83 | 2 | 1 | 153 | 1 | 153 | 3.81e-42 | 138 |
| Msa0779280 | AT1G63220.1 | 39.623 | 159 | 80 | 6 | 1 | 155 | 1 | 147 | 1.41e-27 | 100 |
| Msa0779280 | AT1G63220.2 | 35.849 | 159 | 72 | 6 | 1 | 155 | 1 | 133 | 1.17e-20 | 82.4 |
| Msa0779280 | AT4G00467.2 | 32.353 | 136 | 87 | 2 | 1 | 134 | 1 | 133 | 2.65e-20 | 83.2 |
| Msa0779280 | AT4G00467.1 | 32.353 | 136 | 87 | 2 | 1 | 134 | 1 | 133 | 5.16e-20 | 82.8 |
| Msa0779280 | AT4G34150.1 | 35.052 | 97 | 58 | 2 | 5 | 101 | 11 | 102 | 2.96e-12 | 62.8 |
Find 37 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTATTGTAAAGATTTAT+TGG | 0.151708 | 5_2:+60461203 | Msa0779280:CDS |
| CTCAATAGCACTTGTTTCTT+TGG | 0.198258 | 5_2:+60460718 | Msa0779280:CDS |
| TTCTTTCTAGCAAGTATTAA+AGG | 0.201526 | 5_2:+60461615 | Msa0779280:three_prime_UTR |
| GTAGCTTAGCAACTCCATTT+TGG | 0.254845 | 5_2:-60461236 | None:intergenic |
| TTGGCTCAAGGTGTCCAAAA+TGG | 0.321323 | 5_2:+60461222 | Msa0779280:CDS |
| AGATATGGCAATTGGGATAA+TGG | 0.338735 | 5_2:+60460669 | Msa0779280:exon |
| CAAAGTCATTCTCAAAATAA+TGG | 0.344213 | 5_2:+60460980 | Msa0779280:CDS |
| GGCTCCTATGCTCTTGGCCT+TGG | 0.379325 | 5_2:-60460872 | None:intergenic |
| ACACTCAAAGATATGGCAAT+TGG | 0.382620 | 5_2:+60460661 | Msa0779280:exon |
| TCTTTCTAGCAAGTATTAAA+GGG | 0.405096 | 5_2:+60461616 | Msa0779280:three_prime_UTR |
| GTAGAGGAAGAAATCATGTA+TGG | 0.444098 | 5_2:+60460907 | Msa0779280:CDS |
| TTCTCATACACTCAAAGATA+TGG | 0.452127 | 5_2:+60460654 | Msa0779280:exon |
| CACTCAAAGATATGGCAATT+GGG | 0.464148 | 5_2:+60460662 | Msa0779280:exon |
| CAATCTCTCCACGATAAGAT+TGG | 0.475600 | 5_2:-60461290 | None:intergenic |
| CAAAGAAACAAGTGCTATTG+AGG | 0.483426 | 5_2:-60460717 | None:intergenic |
| CTATATTAATATAGGTGGAA+TGG | 0.484803 | 5_2:+60460824 | Msa0779280:intron |
| CCACACGGCTCCTATGCTCT+TGG | 0.487013 | 5_2:-60460878 | None:intergenic |
| CATAGGAGCCGTGTGGCTAA+AGG | 0.495986 | 5_2:+60460885 | Msa0779280:CDS |
| TTGGTATTGTATCAAAACAT+AGG | 0.496228 | 5_2:-60460853 | None:intergenic |
| TGTAAAGATTTATTGGCTCA+AGG | 0.515900 | 5_2:+60461210 | Msa0779280:CDS |
| GTACATCTTGTGAAAGCTAA+AGG | 0.516040 | 5_2:+60460694 | Msa0779280:CDS |
| AATTCATTCACAGGTGGAAG+AGG | 0.517863 | 5_2:+60461448 | Msa0779280:intron |
| AGCCGTGTGGCTAAAGGTAG+AGG | 0.518837 | 5_2:+60460891 | Msa0779280:CDS |
| TTCCTCTACCTTTAGCCACA+CGG | 0.519437 | 5_2:-60460893 | None:intergenic |
| TTGAAGAAGACATAGGAGGA+TGG | 0.550578 | 5_2:+60461477 | Msa0779280:CDS |
| TGGTATTGTATCAAAACATA+GGG | 0.550960 | 5_2:-60460852 | None:intergenic |
| GATAAATGTATGTTGTTACA+TGG | 0.553610 | 5_2:+60461638 | Msa0779280:three_prime_UTR |
| GAATTAATTGAAGAAGACAT+AGG | 0.564791 | 5_2:+60461470 | Msa0779280:CDS |
| AATACCAAGGCCAAGAGCAT+AGG | 0.592231 | 5_2:+60460868 | Msa0779280:CDS |
| TAGAGGAAGAAATCATGTAT+GGG | 0.596604 | 5_2:+60460908 | Msa0779280:CDS |
| CGAACAACTCTATACTTGAG+AGG | 0.601631 | 5_2:-60461261 | None:intergenic |
| TTAATTGAAGAAGACATAGG+AGG | 0.621683 | 5_2:+60461473 | Msa0779280:CDS |
| ATGTTCAAAGTAGAAAACAA+TGG | 0.628110 | 5_2:+60460942 | Msa0779280:CDS |
| TGTTGTTACATGGAACCTCT+AGG | 0.632829 | 5_2:+60461648 | Msa0779280:three_prime_UTR |
| CGTGCAGACCAATCTTATCG+TGG | 0.690565 | 5_2:+60461282 | Msa0779280:CDS |
| ACAACTCTATACTTGAGAGG+TGG | 0.693150 | 5_2:-60461258 | None:intergenic |
| CCAAGAGCATAGGAGCCGTG+TGG | 0.728413 | 5_2:+60460878 | Msa0779280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTAATTAATTACCTT+TGG | - | chr5_2:60461336-60461355 | None:intergenic | 10.0% |
| !! | ATATATTAATTAATTACCTT+TGG | - | chr5_2:60461336-60461355 | None:intergenic | 10.0% |
| !!! | TTTTACTATATTAATATAGG+TGG | + | chr5_2:60460819-60460838 | Msa0779280:intron | 15.0% |
| !! | AATCTATTGTAAAGATTTAT+TGG | + | chr5_2:60461203-60461222 | Msa0779280:CDS | 15.0% |
| !!! | TTCATATTTCATTTTTGTTA+AGG | + | chr5_2:60461355-60461374 | Msa0779280:intron | 15.0% |
| !!! | TTTTACTATATTAATATAGG+TGG | + | chr5_2:60460819-60460838 | Msa0779280:intron | 15.0% |
| !! | AATCTATTGTAAAGATTTAT+TGG | + | chr5_2:60461203-60461222 | Msa0779280:CDS | 15.0% |
| !!! | TTCATATTTCATTTTTGTTA+AGG | + | chr5_2:60461355-60461374 | Msa0779280:intron | 15.0% |
| !!! | TTTTTTGAATTTGAATCTTC+AGG | + | chr5_2:60460615-60460634 | Msa0779280:five_prime_UTR | 20.0% |
| !!! | TTTTTGAATTTGAATCTTCA+GGG | + | chr5_2:60460616-60460635 | Msa0779280:five_prime_UTR | 20.0% |
| !! | TATGATATGATATGATACAA+GGG | - | chr5_2:60460784-60460803 | None:intergenic | 20.0% |
| !! | ATATGATATGATATGATACA+AGG | - | chr5_2:60460785-60460804 | None:intergenic | 20.0% |
| !! | TATTGTTAGGAATATATATG+TGG | - | chr5_2:60461065-60461084 | None:intergenic | 20.0% |
| !! | AAAAATGAGACATTATTGTT+AGG | - | chr5_2:60461078-60461097 | None:intergenic | 20.0% |
| !! | TTTACAATAGATTCTGTTTA+AGG | - | chr5_2:60461196-60461215 | None:intergenic | 20.0% |
| !! | CATGTAACAATATATAGTTA+TGG | + | chr5_2:60461378-60461397 | Msa0779280:intron | 20.0% |
| !!! | AGTTGATTATTTTTCTTTGT+TGG | + | chr5_2:60461425-60461444 | Msa0779280:intron | 20.0% |
| !!! | ACTACTTTTAGTTTACAAAT+GGG | - | chr5_2:60461545-60461564 | None:intergenic | 20.0% |
| !!! | AACTACTTTTAGTTTACAAA+TGG | - | chr5_2:60461546-60461565 | None:intergenic | 20.0% |
| !!! | TTTTTTGAATTTGAATCTTC+AGG | + | chr5_2:60460615-60460634 | Msa0779280:five_prime_UTR | 20.0% |
| !!! | TTTTTGAATTTGAATCTTCA+GGG | + | chr5_2:60460616-60460635 | Msa0779280:five_prime_UTR | 20.0% |
| !! | TATGATATGATATGATACAA+GGG | - | chr5_2:60460784-60460803 | None:intergenic | 20.0% |
| !! | ATATGATATGATATGATACA+AGG | - | chr5_2:60460785-60460804 | None:intergenic | 20.0% |
| !! | TATTGTTAGGAATATATATG+TGG | - | chr5_2:60461065-60461084 | None:intergenic | 20.0% |
| !! | AAAAATGAGACATTATTGTT+AGG | - | chr5_2:60461078-60461097 | None:intergenic | 20.0% |
| !! | TTTACAATAGATTCTGTTTA+AGG | - | chr5_2:60461196-60461215 | None:intergenic | 20.0% |
| !! | CATGTAACAATATATAGTTA+TGG | + | chr5_2:60461378-60461397 | Msa0779280:intron | 20.0% |
| !!! | AGTTGATTATTTTTCTTTGT+TGG | + | chr5_2:60461425-60461444 | Msa0779280:intron | 20.0% |
| !!! | ACTACTTTTAGTTTACAAAT+GGG | - | chr5_2:60461545-60461564 | None:intergenic | 20.0% |
| !!! | AACTACTTTTAGTTTACAAA+TGG | - | chr5_2:60461546-60461565 | None:intergenic | 20.0% |
| ! | GGCAAAATATATGAATGTAA+GGG | - | chr5_2:60460763-60460782 | None:intergenic | 25.0% |
| ! | CTATATTAATATAGGTGGAA+TGG | + | chr5_2:60460824-60460843 | Msa0779280:intron | 25.0% |
| ! | TGGTATTGTATCAAAACATA+GGG | - | chr5_2:60460855-60460874 | None:intergenic | 25.0% |
| ! | TTGGTATTGTATCAAAACAT+AGG | - | chr5_2:60460856-60460875 | None:intergenic | 25.0% |
| !!! | TATGTTTTGATACAATACCA+AGG | + | chr5_2:60460855-60460874 | Msa0779280:CDS | 25.0% |
| ! | ATGTTCAAAGTAGAAAACAA+TGG | + | chr5_2:60460942-60460961 | Msa0779280:CDS | 25.0% |
| ! | CAAAGTCATTCTCAAAATAA+TGG | + | chr5_2:60460980-60460999 | Msa0779280:CDS | 25.0% |
| ! | GAATTAATTGAAGAAGACAT+AGG | + | chr5_2:60461470-60461489 | Msa0779280:CDS | 25.0% |
| !! | TTCTTTCTAGCAAGTATTAA+AGG | + | chr5_2:60461615-60461634 | Msa0779280:three_prime_UTR | 25.0% |
| !! | TCTTTCTAGCAAGTATTAAA+GGG | + | chr5_2:60461616-60461635 | Msa0779280:three_prime_UTR | 25.0% |
| ! | GATAAATGTATGTTGTTACA+TGG | + | chr5_2:60461638-60461657 | Msa0779280:three_prime_UTR | 25.0% |
| ! | GGCAAAATATATGAATGTAA+GGG | - | chr5_2:60460763-60460782 | None:intergenic | 25.0% |
| ! | CTATATTAATATAGGTGGAA+TGG | + | chr5_2:60460824-60460843 | Msa0779280:intron | 25.0% |
| ! | TGGTATTGTATCAAAACATA+GGG | - | chr5_2:60460855-60460874 | None:intergenic | 25.0% |
| ! | TTGGTATTGTATCAAAACAT+AGG | - | chr5_2:60460856-60460875 | None:intergenic | 25.0% |
| !!! | TATGTTTTGATACAATACCA+AGG | + | chr5_2:60460855-60460874 | Msa0779280:CDS | 25.0% |
| ! | ATGTTCAAAGTAGAAAACAA+TGG | + | chr5_2:60460942-60460961 | Msa0779280:CDS | 25.0% |
| ! | CAAAGTCATTCTCAAAATAA+TGG | + | chr5_2:60460980-60460999 | Msa0779280:CDS | 25.0% |
| ! | GAATTAATTGAAGAAGACAT+AGG | + | chr5_2:60461470-60461489 | Msa0779280:CDS | 25.0% |
| !! | TTCTTTCTAGCAAGTATTAA+AGG | + | chr5_2:60461615-60461634 | Msa0779280:three_prime_UTR | 25.0% |
| !! | TCTTTCTAGCAAGTATTAAA+GGG | + | chr5_2:60461616-60461635 | Msa0779280:three_prime_UTR | 25.0% |
| ! | GATAAATGTATGTTGTTACA+TGG | + | chr5_2:60461638-60461657 | Msa0779280:three_prime_UTR | 25.0% |
| TTCTCATACACTCAAAGATA+TGG | + | chr5_2:60460654-60460673 | Msa0779280:exon | 30.0% | |
| GGGCAAAATATATGAATGTA+AGG | - | chr5_2:60460764-60460783 | None:intergenic | 30.0% | |
| TAGAGGAAGAAATCATGTAT+GGG | + | chr5_2:60460908-60460927 | Msa0779280:CDS | 30.0% | |
| GTTAGGAATATATATGTGGA+AGG | - | chr5_2:60461061-60461080 | None:intergenic | 30.0% | |
| !! | TGTAAAGATTTATTGGCTCA+AGG | + | chr5_2:60461210-60461229 | Msa0779280:CDS | 30.0% |
| !! | TGCTATTACTTTTACTCCAA+AGG | + | chr5_2:60461317-60461336 | Msa0779280:CDS | 30.0% |
| TTAATTGAAGAAGACATAGG+AGG | + | chr5_2:60461473-60461492 | Msa0779280:CDS | 30.0% | |
| AAAAAAAACAAGCATCCTAG+AGG | - | chr5_2:60461666-60461685 | None:intergenic | 30.0% | |
| TTCTCATACACTCAAAGATA+TGG | + | chr5_2:60460654-60460673 | Msa0779280:exon | 30.0% | |
| GGGCAAAATATATGAATGTA+AGG | - | chr5_2:60460764-60460783 | None:intergenic | 30.0% | |
| TAGAGGAAGAAATCATGTAT+GGG | + | chr5_2:60460908-60460927 | Msa0779280:CDS | 30.0% | |
| GTTAGGAATATATATGTGGA+AGG | - | chr5_2:60461061-60461080 | None:intergenic | 30.0% | |
| !! | TGTAAAGATTTATTGGCTCA+AGG | + | chr5_2:60461210-60461229 | Msa0779280:CDS | 30.0% |
| !! | TGCTATTACTTTTACTCCAA+AGG | + | chr5_2:60461317-60461336 | Msa0779280:CDS | 30.0% |
| TTAATTGAAGAAGACATAGG+AGG | + | chr5_2:60461473-60461492 | Msa0779280:CDS | 30.0% | |
| AAAAAAAACAAGCATCCTAG+AGG | - | chr5_2:60461666-60461685 | None:intergenic | 30.0% | |
| ACACTCAAAGATATGGCAAT+TGG | + | chr5_2:60460661-60460680 | Msa0779280:exon | 35.0% | |
| CACTCAAAGATATGGCAATT+GGG | + | chr5_2:60460662-60460681 | Msa0779280:exon | 35.0% | |
| AGATATGGCAATTGGGATAA+TGG | + | chr5_2:60460669-60460688 | Msa0779280:exon | 35.0% | |
| GTACATCTTGTGAAAGCTAA+AGG | + | chr5_2:60460694-60460713 | Msa0779280:CDS | 35.0% | |
| ! | CAAAGAAACAAGTGCTATTG+AGG | - | chr5_2:60460720-60460739 | None:intergenic | 35.0% |
| ! | CTCAATAGCACTTGTTTCTT+TGG | + | chr5_2:60460718-60460737 | Msa0779280:CDS | 35.0% |
| GTAGAGGAAGAAATCATGTA+TGG | + | chr5_2:60460907-60460926 | Msa0779280:CDS | 35.0% | |
| ! | TTTTCTGCTGATGACTTCAT+TGG | + | chr5_2:60461014-60461033 | Msa0779280:CDS | 35.0% |
| CTTTGTTGGAATTCATTCAC+AGG | + | chr5_2:60461439-60461458 | Msa0779280:intron | 35.0% | |
| ACACTCAAAGATATGGCAAT+TGG | + | chr5_2:60460661-60460680 | Msa0779280:exon | 35.0% | |
| CACTCAAAGATATGGCAATT+GGG | + | chr5_2:60460662-60460681 | Msa0779280:exon | 35.0% | |
| AGATATGGCAATTGGGATAA+TGG | + | chr5_2:60460669-60460688 | Msa0779280:exon | 35.0% | |
| GTACATCTTGTGAAAGCTAA+AGG | + | chr5_2:60460694-60460713 | Msa0779280:CDS | 35.0% | |
| ! | CAAAGAAACAAGTGCTATTG+AGG | - | chr5_2:60460720-60460739 | None:intergenic | 35.0% |
| ! | CTCAATAGCACTTGTTTCTT+TGG | + | chr5_2:60460718-60460737 | Msa0779280:CDS | 35.0% |
| GTAGAGGAAGAAATCATGTA+TGG | + | chr5_2:60460907-60460926 | Msa0779280:CDS | 35.0% | |
| ! | TTTTCTGCTGATGACTTCAT+TGG | + | chr5_2:60461014-60461033 | Msa0779280:CDS | 35.0% |
| CTTTGTTGGAATTCATTCAC+AGG | + | chr5_2:60461439-60461458 | Msa0779280:intron | 35.0% | |
| ! | GTAGCTTAGCAACTCCATTT+TGG | - | chr5_2:60461239-60461258 | None:intergenic | 40.0% |
| ACAACTCTATACTTGAGAGG+TGG | - | chr5_2:60461261-60461280 | None:intergenic | 40.0% | |
| CGAACAACTCTATACTTGAG+AGG | - | chr5_2:60461264-60461283 | None:intergenic | 40.0% | |
| CAATCTCTCCACGATAAGAT+TGG | - | chr5_2:60461293-60461312 | None:intergenic | 40.0% | |
| TGTTGGAATTCATTCACAGG+TGG | + | chr5_2:60461442-60461461 | Msa0779280:intron | 40.0% | |
| AATTCATTCACAGGTGGAAG+AGG | + | chr5_2:60461448-60461467 | Msa0779280:intron | 40.0% | |
| TTGAAGAAGACATAGGAGGA+TGG | + | chr5_2:60461477-60461496 | Msa0779280:CDS | 40.0% | |
| TGTTGTTACATGGAACCTCT+AGG | + | chr5_2:60461648-60461667 | Msa0779280:three_prime_UTR | 40.0% | |
| ! | GTAGCTTAGCAACTCCATTT+TGG | - | chr5_2:60461239-60461258 | None:intergenic | 40.0% |
| ACAACTCTATACTTGAGAGG+TGG | - | chr5_2:60461261-60461280 | None:intergenic | 40.0% | |
| CGAACAACTCTATACTTGAG+AGG | - | chr5_2:60461264-60461283 | None:intergenic | 40.0% | |
| CAATCTCTCCACGATAAGAT+TGG | - | chr5_2:60461293-60461312 | None:intergenic | 40.0% | |
| TGTTGGAATTCATTCACAGG+TGG | + | chr5_2:60461442-60461461 | Msa0779280:intron | 40.0% | |
| AATTCATTCACAGGTGGAAG+AGG | + | chr5_2:60461448-60461467 | Msa0779280:intron | 40.0% | |
| TTGAAGAAGACATAGGAGGA+TGG | + | chr5_2:60461477-60461496 | Msa0779280:CDS | 40.0% | |
| TGTTGTTACATGGAACCTCT+AGG | + | chr5_2:60461648-60461667 | Msa0779280:three_prime_UTR | 40.0% | |
| ! | AATACCAAGGCCAAGAGCAT+AGG | + | chr5_2:60460868-60460887 | Msa0779280:CDS | 45.0% |
| TTCCTCTACCTTTAGCCACA+CGG | - | chr5_2:60460896-60460915 | None:intergenic | 45.0% | |
| !! | TGGAAGGCATTAGTCTTACG+TGG | - | chr5_2:60461045-60461064 | None:intergenic | 45.0% |
| ! | TTGGCTCAAGGTGTCCAAAA+TGG | + | chr5_2:60461222-60461241 | Msa0779280:CDS | 45.0% |
| ! | AATACCAAGGCCAAGAGCAT+AGG | + | chr5_2:60460868-60460887 | Msa0779280:CDS | 45.0% |
| TTCCTCTACCTTTAGCCACA+CGG | - | chr5_2:60460896-60460915 | None:intergenic | 45.0% | |
| !! | TGGAAGGCATTAGTCTTACG+TGG | - | chr5_2:60461045-60461064 | None:intergenic | 45.0% |
| ! | TTGGCTCAAGGTGTCCAAAA+TGG | + | chr5_2:60461222-60461241 | Msa0779280:CDS | 45.0% |
| !!! | TATTTTTACTATATTAATAT+AGG | + | chr5_2:60460816-60460835 | Msa0779280:intron | 5.0% |
| !!! | TATTTTTACTATATTAATAT+AGG | + | chr5_2:60460816-60460835 | Msa0779280:intron | 5.0% |
| CGTGCAGACCAATCTTATCG+TGG | + | chr5_2:60461282-60461301 | Msa0779280:CDS | 50.0% | |
| CGTGCAGACCAATCTTATCG+TGG | + | chr5_2:60461282-60461301 | Msa0779280:CDS | 50.0% | |
| CATAGGAGCCGTGTGGCTAA+AGG | + | chr5_2:60460885-60460904 | Msa0779280:CDS | 55.0% | |
| AGCCGTGTGGCTAAAGGTAG+AGG | + | chr5_2:60460891-60460910 | Msa0779280:CDS | 55.0% | |
| CATAGGAGCCGTGTGGCTAA+AGG | + | chr5_2:60460885-60460904 | Msa0779280:CDS | 55.0% | |
| AGCCGTGTGGCTAAAGGTAG+AGG | + | chr5_2:60460891-60460910 | Msa0779280:CDS | 55.0% | |
| GGCTCCTATGCTCTTGGCCT+TGG | - | chr5_2:60460875-60460894 | None:intergenic | 60.0% | |
| CCACACGGCTCCTATGCTCT+TGG | - | chr5_2:60460881-60460900 | None:intergenic | 60.0% | |
| ! | CCAAGAGCATAGGAGCCGTG+TGG | + | chr5_2:60460878-60460897 | Msa0779280:CDS | 60.0% |
| GGCTCCTATGCTCTTGGCCT+TGG | - | chr5_2:60460875-60460894 | None:intergenic | 60.0% | |
| CCACACGGCTCCTATGCTCT+TGG | - | chr5_2:60460881-60460900 | None:intergenic | 60.0% | |
| ! | CCAAGAGCATAGGAGCCGTG+TGG | + | chr5_2:60460878-60460897 | Msa0779280:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 60460587 | 60461736 | 60460587 | ID=Msa0779280;Name=Msa0779280 |
| chr5_2 | mRNA | 60460587 | 60461736 | 60460587 | ID=Msa0779280-mRNA-1;Parent=Msa0779280;Name=Msa0779280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=86|1|1|1|1|1|4|210|158 |
| chr5_2 | exon | 60460587 | 60460739 | 60460587 | ID=Msa0779280-mRNA-1:exon:17684;Parent=Msa0779280-mRNA-1 |
| chr5_2 | exon | 60460838 | 60461045 | 60460838 | ID=Msa0779280-mRNA-1:exon:17685;Parent=Msa0779280-mRNA-1 |
| chr5_2 | exon | 60461203 | 60461338 | 60461203 | ID=Msa0779280-mRNA-1:exon:17686;Parent=Msa0779280-mRNA-1 |
| chr5_2 | exon | 60461461 | 60461736 | 60461461 | ID=Msa0779280-mRNA-1:exon:17687;Parent=Msa0779280-mRNA-1 |
| chr5_2 | five_prime_UTR | 60460587 | 60460672 | 60460587 | ID=Msa0779280-mRNA-1:five_prime_utr;Parent=Msa0779280-mRNA-1 |
| chr5_2 | CDS | 60460673 | 60460739 | 60460673 | ID=Msa0779280-mRNA-1:cds;Parent=Msa0779280-mRNA-1 |
| chr5_2 | CDS | 60460838 | 60461045 | 60460838 | ID=Msa0779280-mRNA-1:cds;Parent=Msa0779280-mRNA-1 |
| chr5_2 | CDS | 60461203 | 60461338 | 60461203 | ID=Msa0779280-mRNA-1:cds;Parent=Msa0779280-mRNA-1 |
| chr5_2 | CDS | 60461461 | 60461526 | 60461461 | ID=Msa0779280-mRNA-1:cds;Parent=Msa0779280-mRNA-1 |
| chr5_2 | three_prime_UTR | 60461527 | 60461736 | 60461527 | ID=Msa0779280-mRNA-1:three_prime_utr;Parent=Msa0779280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
