AlfalfaGEDB | Msa0779280

M. sativa cultivar zhongmu-4 / Msa0779280

KEGG: -
GO: -
PFAM: PF00168.33

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0779280	XP_003616408.2	98.113	159	2	1	1	158	1	159	6.63e-111	322

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0779280	sp\|Q0JHU5\|ERG1_ORYSJ	44.079	152	83	1	4	153	5	156	9.70e-46	149

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0779280	G7KBR3	98.113	159	2	1	1	158	1	159	3.17e-111	322

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0100070	Msa0779280	0.800768	1.234105e-48	-8.615850e-47
Msa0737500	Msa0779280	0.832281	1.033828e-55	-8.615850e-47
Msa0737520	Msa0779280	0.825921	3.601424e-54	-8.615850e-47
Msa0779270	Msa0779280	0.985439	1.434310e-163	-8.615850e-47
Msa0779280	Msa0816670	0.815840	7.522050e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0779280	MtrunA17_Chr5g0435261	98.113	159	2	1	1	158	1	159	6.10e-115	322
Msa0779280	MtrunA17_Chr5g0435251	60.645	155	59	2	1	155	1	153	1.29e-59	182
Msa0779280	MtrunA17_Chr8g0350031	42.675	157	75	5	1	154	1	145	1.35e-35	120
Msa0779280	MtrunA17_Chr8g0350021	40.127	157	79	5	1	154	1	145	2.00e-32	112
Msa0779280	MtrunA17_Chr8g0348941	31.944	144	96	2	1	143	1	143	2.49e-19	80.1
Msa0779280	MtrunA17_Chr1g0147471	43.750	64	32	1	27	90	2	61	5.30e-16	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0779280	AT3G55470.2	45.098	153	83	1	1	153	1	152	5.88e-44	142
Msa0779280	AT3G55470.1	44.805	154	83	2	1	153	1	153	3.81e-42	138
Msa0779280	AT1G63220.1	39.623	159	80	6	1	155	1	147	1.41e-27	100
Msa0779280	AT1G63220.2	35.849	159	72	6	1	155	1	133	1.17e-20	82.4
Msa0779280	AT4G00467.2	32.353	136	87	2	1	134	1	133	2.65e-20	83.2
Msa0779280	AT4G00467.1	32.353	136	87	2	1	134	1	133	5.16e-20	82.8
Msa0779280	AT4G34150.1	35.052	97	58	2	5	101	11	102	2.96e-12	62.8

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Find 37 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATACCAAGGCCAAGAGCAT+AGG	0.592231	5_2:+60460868	Msa0779280:CDS
AATCTATTGTAAAGATTTAT+TGG	0.151708	5_2:+60461203	Msa0779280:CDS
AATTCATTCACAGGTGGAAG+AGG	0.517863	5_2:+60461448	Msa0779280:intron
ACAACTCTATACTTGAGAGG+TGG	0.693150	5_2:-60461258	None:intergenic
ACACTCAAAGATATGGCAAT+TGG	0.382620	5_2:+60460661	Msa0779280:exon
AGATATGGCAATTGGGATAA+TGG	0.338735	5_2:+60460669	Msa0779280:exon
AGCCGTGTGGCTAAAGGTAG+AGG	0.518837	5_2:+60460891	Msa0779280:CDS
ATGTTCAAAGTAGAAAACAA+TGG	0.628110	5_2:+60460942	Msa0779280:CDS
CAAAGAAACAAGTGCTATTG+AGG	0.483426	5_2:-60460717	None:intergenic
CAAAGTCATTCTCAAAATAA+TGG	0.344213	5_2:+60460980	Msa0779280:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTCATACACTCAAAGATA+TGG	+	chr5_2:60460654-60460673	Msa0779280:exon	30.0%
GGGCAAAATATATGAATGTA+AGG	-	chr5_2:60460764-60460783	None:intergenic	30.0%
TAGAGGAAGAAATCATGTAT+GGG	+	chr5_2:60460908-60460927	Msa0779280:CDS	30.0%
GTTAGGAATATATATGTGGA+AGG	-	chr5_2:60461061-60461080	None:intergenic	30.0%
TTAATTGAAGAAGACATAGG+AGG	+	chr5_2:60461473-60461492	Msa0779280:CDS	30.0%
AAAAAAAACAAGCATCCTAG+AGG	-	chr5_2:60461666-60461685	None:intergenic	30.0%
TTCTCATACACTCAAAGATA+TGG	+	chr5_2:60460654-60460673	Msa0779280:exon	30.0%
GGGCAAAATATATGAATGTA+AGG	-	chr5_2:60460764-60460783	None:intergenic	30.0%
TAGAGGAAGAAATCATGTAT+GGG	+	chr5_2:60460908-60460927	Msa0779280:CDS	30.0%
GTTAGGAATATATATGTGGA+AGG	-	chr5_2:60461061-60461080	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	60460587	60461736	60460587	ID=Msa0779280;Name=Msa0779280
chr5_2	mRNA	60460587	60461736	60460587	ID=Msa0779280-mRNA-1;Parent=Msa0779280;Name=Msa0779280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=86\|1\|1\|1\|1\|1\|4\|210\|158
chr5_2	exon	60460587	60460739	60460587	ID=Msa0779280-mRNA-1:exon:17684;Parent=Msa0779280-mRNA-1
chr5_2	exon	60460838	60461045	60460838	ID=Msa0779280-mRNA-1:exon:17685;Parent=Msa0779280-mRNA-1
chr5_2	exon	60461203	60461338	60461203	ID=Msa0779280-mRNA-1:exon:17686;Parent=Msa0779280-mRNA-1
chr5_2	exon	60461461	60461736	60461461	ID=Msa0779280-mRNA-1:exon:17687;Parent=Msa0779280-mRNA-1
chr5_2	five_prime_UTR	60460587	60460672	60460587	ID=Msa0779280-mRNA-1:five_prime_utr;Parent=Msa0779280-mRNA-1
chr5_2	CDS	60460673	60460739	60460673	ID=Msa0779280-mRNA-1:cds;Parent=Msa0779280-mRNA-1
chr5_2	CDS	60460838	60461045	60460838	ID=Msa0779280-mRNA-1:cds;Parent=Msa0779280-mRNA-1
chr5_2	CDS	60461203	60461338	60461203	ID=Msa0779280-mRNA-1:cds;Parent=Msa0779280-mRNA-1
chr5_2	CDS	60461461	60461526	60461461	ID=Msa0779280-mRNA-1:cds;Parent=Msa0779280-mRNA-1
chr5_2	three_prime_UTR	60461527	60461736	60461527	ID=Msa0779280-mRNA-1:three_prime_utr;Parent=Msa0779280-mRNA-1

Gene Sequence

>Msa0779280

ATGGCAATTGGGATAATGGAAGTACATCTTGTGAAAGCTAAAGGCCTCAATAGCACTTGTTTCTTTGGTGGAATGGAAGATCCCTATGTTTTGATACAATACCAAGGCCAAGAGCATAGGAGCCGTGTGGCTAAAGGTAGAGGAAGAAATCATGTATGGGATGAGATATTTATGTTCAAAGTAGAAAACAATGGATCAAATGATAAAAACAAAGTCATTCTCAAAATAATGGACAAAGATAGCTTTTCTGCTGATGACTTCATTGGACAAGCCACAATCTATTGTAAAGATTTATTGGCTCAAGGTGTCCAAAATGGAGTTGCTAAGCTACCACCTCTCAAGTATAGAGTTGTTCGTGCAGACCAATCTTATCGTGGAGAGATTGAAGTTGCTATTACTTTTACTCCAAAGGTGGAAGAGGAATTAATTGAAGAAGACATAGGAGGATGGAAAGAAAGTAGTTACTATATATCTTAA

Protein sequence

>Msa0779280

MAIGIMEVHLVKAKGLNSTCFFGGMEDPYVLIQYQGQEHRSRVAKGRGRNHVWDEIFMFKVENNGSNDKNKVILKIMDKDSFSADDFIGQATIYCKDLLAQGVQNGVAKLPPLKYRVVRADQSYRGEIEVAITFTPKVEEELIEEDIGGWKESSYYIS*