Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0779880 | XP_003609181.2 | 70.286 | 525 | 117 | 4 | 7 | 503 | 70 | 583 | 0.0 | 717 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0779880 | sp|Q9C9C0|SPPA1_ARATH | 56.579 | 532 | 193 | 5 | 1 | 505 | 83 | 603 | 0.0 | 577 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0779880 | G7JT56 | 70.286 | 525 | 117 | 4 | 7 | 503 | 70 | 583 | 0.0 | 717 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0779880 | Msa0824000 | 0.892197 | 1.981960e-74 | -8.615850e-47 |
Msa0779880 | Msa1060840 | 0.811234 | 7.753475e-51 | -8.615850e-47 |
Msa0779880 | Msa1192640 | 0.812601 | 3.905888e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0779880 | MtrunA17_Chr4g0061881 | 70.286 | 525 | 117 | 4 | 7 | 503 | 70 | 583 | 0.0 | 717 |
Msa0779880 | MtrunA17_Chr2g0307851 | 62.977 | 524 | 156 | 4 | 7 | 503 | 83 | 595 | 0.0 | 630 |
Msa0779880 | MtrunA17_Chr4g0061841 | 62.342 | 316 | 30 | 3 | 58 | 373 | 8 | 234 | 6.89e-123 | 359 |
Msa0779880 | MtrunA17_Chr5g0437391 | 44.267 | 375 | 129 | 11 | 111 | 480 | 1 | 300 | 3.74e-79 | 251 |
Msa0779880 | MtrunA17_Chr4g0073611 | 45.714 | 315 | 120 | 8 | 61 | 370 | 4 | 272 | 6.93e-76 | 241 |
Msa0779880 | MtrunA17_Chr4g0076561 | 59.314 | 204 | 53 | 2 | 263 | 466 | 13 | 186 | 3.79e-72 | 227 |
Msa0779880 | MtrunA17_Chr5g0408331 | 41.854 | 356 | 129 | 9 | 5 | 357 | 32 | 312 | 2.42e-71 | 229 |
Msa0779880 | MtrunA17_Chr4g0061831 | 83.962 | 106 | 17 | 0 | 401 | 506 | 9 | 114 | 7.84e-57 | 185 |
Msa0779880 | MtrunA17_Chr8g0344851 | 59.412 | 170 | 58 | 5 | 339 | 505 | 1 | 162 | 5.13e-52 | 175 |
Msa0779880 | MtrunA17_Chr4g0069071 | 34.115 | 384 | 219 | 10 | 47 | 421 | 13 | 371 | 3.34e-51 | 178 |
Msa0779880 | MtrunA17_Chr4g0064001 | 57.746 | 142 | 46 | 3 | 364 | 505 | 4 | 131 | 2.19e-39 | 142 |
Msa0779880 | MtrunA17_Chr8g0344821 | 59.406 | 101 | 39 | 1 | 405 | 505 | 5 | 103 | 2.03e-29 | 112 |
Msa0779880 | MtrunA17_Chr4g0076571 | 53.211 | 109 | 40 | 2 | 54 | 162 | 1 | 98 | 1.24e-27 | 106 |
Msa0779880 | MtrunA17_Chr8g0344831 | 54.545 | 121 | 48 | 2 | 240 | 360 | 5 | 118 | 1.23e-26 | 104 |
Msa0779880 | MtrunA17_Chr5g0437451 | 44.355 | 124 | 45 | 3 | 385 | 505 | 46 | 148 | 1.20e-21 | 91.7 |
Msa0779880 | MtrunA17_Chr4g0073621 | 74.545 | 55 | 12 | 1 | 453 | 505 | 1 | 55 | 1.20e-19 | 83.2 |
Msa0779880 | MtrunA17_Chr4g0063991 | 58.228 | 79 | 27 | 2 | 261 | 339 | 1 | 73 | 8.75e-16 | 72.4 |
Msa0779880 | MtrunA17_Chr5g0408341 | 72.917 | 48 | 13 | 0 | 458 | 505 | 1 | 48 | 1.19e-15 | 73.9 |
Msa0779880 | MtrunA17_Chr5g0437441 | 39.796 | 98 | 52 | 3 | 22 | 115 | 11 | 105 | 7.47e-15 | 70.5 |
Msa0779880 | MtrunA17_Chr4g0069081 | 50.746 | 67 | 33 | 0 | 439 | 505 | 7 | 73 | 2.44e-14 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0779880 | AT1G73990.1 | 56.579 | 532 | 193 | 5 | 1 | 505 | 83 | 603 | 0.0 | 577 |
Msa0779880 | AT1G73990.2 | 54.564 | 482 | 181 | 5 | 1 | 455 | 83 | 553 | 7.56e-173 | 500 |
Find 115 sgRNAs with CRISPR-Local
Find 348 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAACAAATTATCCCAAATT+TGG | 0.074756 | 5_2:-61281689 | None:intergenic |
ATCAGCTTCTGCCCCAAATT+TGG | 0.137847 | 5_2:+61281676 | Msa0779880:CDS |
ATCTGCCTGTAGTTTATTTC+AGG | 0.183849 | 5_2:+61283022 | Msa0779880:CDS |
AGTGCTAATGTTCATTTGTT+TGG | 0.210576 | 5_2:+61282017 | Msa0779880:CDS |
CAACAAATTATCCCAAATTT+GGG | 0.242638 | 5_2:-61281688 | None:intergenic |
TCAGGTGTTTATGACTATAT+TGG | 0.243093 | 5_2:+61282448 | Msa0779880:intron |
AGGTATATTGGCCTTCAATT+TGG | 0.261660 | 5_2:-61286442 | None:intergenic |
AAAGAATTGGCAAATATAAA+AGG | 0.266174 | 5_2:+61282488 | Msa0779880:CDS |
TAGACAATATCTATTCAAAT+TGG | 0.281442 | 5_2:+61282575 | Msa0779880:CDS |
TTTGATTTCAAGCCCGTTAC+TGG | 0.288674 | 5_2:+61281310 | Msa0779880:CDS |
GTGCTAATGTTCATTTGTTT+GGG | 0.293778 | 5_2:+61282018 | Msa0779880:CDS |
GCAGAAAATCTGACCTTAAC+TGG | 0.308465 | 5_2:+61284890 | Msa0779880:CDS |
AAACTGTACCTTTGACCCTT+TGG | 0.329288 | 5_2:-61283687 | None:intergenic |
AAAGAGACCGTTGGAATATC+AGG | 0.330013 | 5_2:+61283571 | Msa0779880:CDS |
AGGTTGCACAGGGGAGGATT+TGG | 0.339975 | 5_2:+61286349 | Msa0779880:CDS |
CTGTCTATCTTGAGGTATAT+TGG | 0.347144 | 5_2:-61286454 | None:intergenic |
TCAGCTTCTGCCCCAAATTT+GGG | 0.348845 | 5_2:+61281677 | Msa0779880:CDS |
TGTTCATTTGTTTGGGTTCA+CGG | 0.350788 | 5_2:+61282025 | Msa0779880:CDS |
ATCTTAAATTTCAGAAAATC+AGG | 0.363167 | 5_2:+61281804 | Msa0779880:CDS |
ATCAACAAACATCAAAATAA+AGG | 0.366232 | 5_2:-61286492 | None:intergenic |
GAGAAACTTGATGAGGAGAT+TGG | 0.376602 | 5_2:+61285627 | Msa0779880:CDS |
TACTATCACAACTCTACATT+TGG | 0.378668 | 5_2:+61281827 | Msa0779880:CDS |
GAACCACAAGTTGAAAGAAT+TGG | 0.382028 | 5_2:+61282475 | Msa0779880:CDS |
GTTGAAGAGACATTTGTTAG+AGG | 0.387410 | 5_2:+61282047 | Msa0779880:CDS |
TGTTAATTTAAATTGTGGTT+GGG | 0.399160 | 5_2:+61281755 | Msa0779880:CDS |
CACTCCAATCGAACCAGTTA+AGG | 0.402912 | 5_2:-61284903 | None:intergenic |
ATAGCTGTCATCCGAGCCTC+AGG | 0.410065 | 5_2:+61283607 | Msa0779880:CDS |
AGCAAGTGGAGGATACTATA+TGG | 0.425036 | 5_2:+61284844 | Msa0779880:CDS |
CACCTCCTGGACTATCAATT+CGG | 0.430092 | 5_2:-61284412 | None:intergenic |
GAAGCAAGAGCATCACCTCC+TGG | 0.433755 | 5_2:-61284425 | None:intergenic |
ATAAGCATACTGTGTTCTCT+TGG | 0.441843 | 5_2:-61286183 | None:intergenic |
CATGGTCTGGATGATGCTAT+TGG | 0.452792 | 5_2:+61286393 | Msa0779880:CDS |
TTGTTAATTTAAATTGTGGT+TGG | 0.453345 | 5_2:+61281754 | Msa0779880:CDS |
AACTTGTTGAAGCCAGTAAC+GGG | 0.454036 | 5_2:-61281322 | None:intergenic |
TCAACAAAGAACTTATATCA+AGG | 0.457344 | 5_2:+61285652 | Msa0779880:CDS |
CAAATTGTTAATTTAAATTG+TGG | 0.458430 | 5_2:+61281750 | Msa0779880:CDS |
TTGCCAATTCTTTCAACTTG+TGG | 0.463182 | 5_2:-61282478 | None:intergenic |
ATCAGTAGTGTTGGTGGCAA+AGG | 0.481394 | 5_2:+61283634 | Msa0779880:CDS |
GGATGCAGCATCTCATGGTC+TGG | 0.483325 | 5_2:+61286380 | Msa0779880:CDS |
CAATATCTATTCAAATTGGC+TGG | 0.486130 | 5_2:+61282579 | Msa0779880:CDS |
CTGACCTTAACTGGTTCGAT+TGG | 0.490609 | 5_2:+61284899 | Msa0779880:CDS |
TAGGTTGAAGAACAGACTTC+GGG | 0.490615 | 5_2:+61282984 | Msa0779880:CDS |
GTGGCTTATCTCCCTTCGAT+TGG | 0.490733 | 5_2:+61281941 | Msa0779880:CDS |
GCAGAATGTGGAGAGAAATC+AGG | 0.494576 | 5_2:+61284774 | Msa0779880:intron |
ATTGAGAACTTCATAAATGA+AGG | 0.504321 | 5_2:+61282716 | Msa0779880:CDS |
AATAATATCCAAAGGGTCAA+AGG | 0.511511 | 5_2:+61283679 | Msa0779880:CDS |
TATTGCTATAGCCAAATTGA+AGG | 0.515312 | 5_2:+61286431 | Msa0779880:CDS |
CTCAAATATAGAAAATACTC+TGG | 0.515563 | 5_2:+61283541 | Msa0779880:intron |
CAAGATGGAAGAGGTTGCAC+AGG | 0.515973 | 5_2:+61286338 | Msa0779880:CDS |
AAGAATTGGCAAATATAAAA+GGG | 0.517870 | 5_2:+61282489 | Msa0779880:CDS |
CTAGGTTGAAGAACAGACTT+CGG | 0.518668 | 5_2:+61282983 | Msa0779880:CDS |
AAAACATACAGTCATTGCTC+GGG | 0.518906 | 5_2:-61286234 | None:intergenic |
GTGGTTTGCAGGTTATACCT+AGG | 0.518958 | 5_2:+61282965 | Msa0779880:intron |
ATTGGCAAATATAAAAGGGC+AGG | 0.519140 | 5_2:+61282493 | Msa0779880:CDS |
CAACAAAGAACTTATATCAA+GGG | 0.521238 | 5_2:+61285653 | Msa0779880:CDS |
CAATATACCTCAAGATAGAC+AGG | 0.525916 | 5_2:+61286455 | Msa0779880:CDS |
TAAAACATACAGTCATTGCT+CGG | 0.540206 | 5_2:-61286235 | None:intergenic |
GGTCTGGATGATGCTATTGG+TGG | 0.552898 | 5_2:+61286396 | Msa0779880:CDS |
GGGATCATCAGTAGTGTTGG+TGG | 0.555957 | 5_2:+61283628 | Msa0779880:CDS |
TACTGATGATCCCTGAGGCT+CGG | 0.557201 | 5_2:-61283618 | None:intergenic |
GTTTATTAATAATATCCAAA+GGG | 0.557808 | 5_2:+61283672 | Msa0779880:CDS |
TTTACCTCCTGATATTCCAA+CGG | 0.558713 | 5_2:-61283578 | None:intergenic |
GGAGTTAGAAAAGAGACCGT+TGG | 0.562047 | 5_2:+61283562 | Msa0779880:CDS |
TGGAGGATACTATATGGCGA+TGG | 0.564573 | 5_2:+61284850 | Msa0779880:CDS |
AACAAAGAACTTATATCAAG+GGG | 0.566859 | 5_2:+61285654 | Msa0779880:CDS |
CGAAGTCTGTTCTTCAACCT+AGG | 0.567178 | 5_2:-61282982 | None:intergenic |
AAATGAACATTAGCACTTGG+AGG | 0.567253 | 5_2:-61282011 | None:intergenic |
ATTATCAGCTGCAAAGAGCT+CGG | 0.572201 | 5_2:-61285685 | None:intergenic |
AAACTTGTTGAAGCCAGTAA+CGG | 0.575334 | 5_2:-61281323 | None:intergenic |
TCAGGGATCATCAGTAGTGT+TGG | 0.575368 | 5_2:+61283625 | Msa0779880:CDS |
GATGTCAACAATTATCCCAC+TGG | 0.577595 | 5_2:+61281283 | Msa0779880:CDS |
ATGAACATTAGCACTTGGAG+GGG | 0.577818 | 5_2:-61282009 | None:intergenic |
GTCTGGATGATGCTATTGGT+GGG | 0.581159 | 5_2:+61286397 | Msa0779880:CDS |
AATGAACATTAGCACTTGGA+GGG | 0.581968 | 5_2:-61282010 | None:intergenic |
TCAGACATTGAAGCAACGAC+TGG | 0.588059 | 5_2:-61284815 | None:intergenic |
GGGGAGGATTTGGAATGGTA+AGG | 0.588905 | 5_2:+61286359 | Msa0779880:CDS |
CTCACGATGATCTTCAGACA+TGG | 0.591082 | 5_2:-61282536 | None:intergenic |
GGTAAGGATGCAGCATCTCA+TGG | 0.592197 | 5_2:+61286375 | Msa0779880:CDS |
CTAGGTAGACAAGATGGAAG+AGG | 0.592383 | 5_2:+61286329 | Msa0779880:intron |
ATGTCTGATGTGGCAGCAAG+TGG | 0.596100 | 5_2:+61284830 | Msa0779880:CDS |
GTTATCCGAATTGATAGTCC+AGG | 0.597364 | 5_2:+61284407 | Msa0779880:CDS |
GGAGGATACTATATGGCGAT+GGG | 0.597758 | 5_2:+61284851 | Msa0779880:CDS |
ATATACCTGAAATAAACTAC+AGG | 0.598226 | 5_2:-61283027 | None:intergenic |
AGTTTATTAATAATATCCAA+AGG | 0.601934 | 5_2:+61283671 | Msa0779880:CDS |
ATACCTCAAGATAGACAGGT+TGG | 0.608175 | 5_2:+61286459 | Msa0779880:CDS |
GCAAATAGCTGTGCTTCATG+TGG | 0.609314 | 5_2:-61286161 | None:intergenic |
AACAAATGAACATTAGCACT+TGG | 0.609748 | 5_2:-61282014 | None:intergenic |
AAGATGGAAGAGGTTGCACA+GGG | 0.610115 | 5_2:+61286339 | Msa0779880:CDS |
TGGAAGAGGTTGCACAGGGG+AGG | 0.610833 | 5_2:+61286343 | Msa0779880:CDS |
CACTACCGTGTTGAACACGC+TGG | 0.611142 | 5_2:-61281381 | None:intergenic |
TGAACATTAGCACTTGGAGG+GGG | 0.611697 | 5_2:-61282008 | None:intergenic |
AATTTGGGGCAGAAGCTGAT+CGG | 0.612370 | 5_2:-61281673 | None:intergenic |
AAACCAACCTGTCTATCTTG+AGG | 0.613884 | 5_2:-61286462 | None:intergenic |
TAACTATGAGAAACTTGATG+AGG | 0.620592 | 5_2:+61285620 | Msa0779880:CDS |
GTGTCACTAGGTAGACAAGA+TGG | 0.621852 | 5_2:+61286323 | Msa0779880:intron |
AATTTGTTGAAAGCAGCTTG+TGG | 0.634019 | 5_2:+61281702 | Msa0779880:CDS |
CGTTGCTTCAATGTCTGATG+TGG | 0.635354 | 5_2:+61284820 | Msa0779880:CDS |
ACTACCGTGTTGAACACGCT+GGG | 0.641817 | 5_2:-61281380 | None:intergenic |
AACAAATTATCCCAAATTTG+GGG | 0.643034 | 5_2:-61281687 | None:intergenic |
TTGAAATCAAAGTCACCAGT+GGG | 0.647790 | 5_2:-61281298 | None:intergenic |
TCTTCCCAGCGTGTTCAACA+CGG | 0.656709 | 5_2:+61281376 | Msa0779880:CDS |
GATCAAGTCTCTTCTGCCAG+AGG | 0.657201 | 5_2:+61282601 | Msa0779880:CDS |
TAGCTGTCATCCGAGCCTCA+GGG | 0.663090 | 5_2:+61283608 | Msa0779880:CDS |
TCTGATGTGGCAGCAAGTGG+AGG | 0.665663 | 5_2:+61284833 | Msa0779880:CDS |
TGGCAAAGGTATCATTGCAG+AGG | 0.674393 | 5_2:+61283648 | Msa0779880:CDS |
GAGACCGTTGGAATATCAGG+AGG | 0.676771 | 5_2:+61283574 | Msa0779880:CDS |
GCACAGGGGAGGATTTGGAA+TGG | 0.677665 | 5_2:+61286354 | Msa0779880:CDS |
CTTGAAATCAAAGTCACCAG+TGG | 0.693626 | 5_2:-61281299 | None:intergenic |
ATCCGAATTGATAGTCCAGG+AGG | 0.700913 | 5_2:+61284410 | Msa0779880:CDS |
AAGCATACTCTATGATGACG+AGG | 0.712058 | 5_2:+61282781 | Msa0779880:CDS |
AGATATACAGCAGAAATACG+AGG | 0.738061 | 5_2:-61281726 | None:intergenic |
TAAACTTAACATGCTAACAG+CGG | 0.746056 | 5_2:+61281351 | Msa0779880:CDS |
GTTTGTAGGAAAATGCGCTG+TGG | 0.760280 | 5_2:+61281922 | Msa0779880:intron |
AACACTACTGATGATCCCTG+AGG | 0.769155 | 5_2:-61283623 | None:intergenic |
AGATGGAAGAGGTTGCACAG+GGG | 0.806994 | 5_2:+61286340 | Msa0779880:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACAAATCTAAATTTAAAAA+AGG | - | chr5_2:61282390-61282409 | None:intergenic | 10.0% |
!! | TATTATTAAAAAATCTGTAT+TGG | + | chr5_2:61283313-61283332 | Msa0779880:intron | 10.0% |
!!! | AATATAAATTGATTCAAAAA+GGG | - | chr5_2:61286091-61286110 | None:intergenic | 10.0% |
!!! | AAATATAAATTGATTCAAAA+AGG | - | chr5_2:61286092-61286111 | None:intergenic | 10.0% |
!! | CAAATTGTTAATTTAAATTG+TGG | + | chr5_2:61281750-61281769 | Msa0779880:CDS | 15.0% |
!!! | AACAGAATTTTATCAAATTA+AGG | - | chr5_2:61283141-61283160 | None:intergenic | 15.0% |
!! | ATATAAATTTGATAGAAAAC+AGG | - | chr5_2:61283460-61283479 | None:intergenic | 15.0% |
!! | AGTTTATTAATAATATCCAA+AGG | + | chr5_2:61283671-61283690 | Msa0779880:CDS | 15.0% |
!! | GTTTATTAATAATATCCAAA+GGG | + | chr5_2:61283672-61283691 | Msa0779880:CDS | 15.0% |
!! | ATATTATTTACTATAACAGA+TGG | + | chr5_2:61283834-61283853 | Msa0779880:intron | 15.0% |
!! | TATTATTTACTATAACAGAT+GGG | + | chr5_2:61283835-61283854 | Msa0779880:intron | 15.0% |
!!! | TATATTTTTCAAAATCATCA+AGG | - | chr5_2:61283917-61283936 | None:intergenic | 15.0% |
!! | ATATATGAACAAAATCTATT+AGG | - | chr5_2:61285725-61285744 | None:intergenic | 15.0% |
!! | GTTCTTTGAATTATATTATT+AGG | + | chr5_2:61285915-61285934 | Msa0779880:intron | 15.0% |
!! | TTGTTAATTTAAATTGTGGT+TGG | + | chr5_2:61281754-61281773 | Msa0779880:CDS | 20.0% |
!! | TGTTAATTTAAATTGTGGTT+GGG | + | chr5_2:61281755-61281774 | Msa0779880:CDS | 20.0% |
!! | ATCTTAAATTTCAGAAAATC+AGG | + | chr5_2:61281804-61281823 | Msa0779880:CDS | 20.0% |
!! | AAAGAATTGGCAAATATAAA+AGG | + | chr5_2:61282488-61282507 | Msa0779880:CDS | 20.0% |
!! | AAGAATTGGCAAATATAAAA+GGG | + | chr5_2:61282489-61282508 | Msa0779880:CDS | 20.0% |
!! | TAGACAATATCTATTCAAAT+TGG | + | chr5_2:61282575-61282594 | Msa0779880:CDS | 20.0% |
!!! | CATTTGTTTAAGATACAATT+AGG | - | chr5_2:61282645-61282664 | None:intergenic | 20.0% |
!! | CTAATTGTATCTTAAACAAA+TGG | + | chr5_2:61282643-61282662 | Msa0779880:intron | 20.0% |
!! | ATGATTTATATTGATCAAGT+TGG | - | chr5_2:61282864-61282883 | None:intergenic | 20.0% |
!! | ATATAAATCATATTGAGAGT+TGG | + | chr5_2:61282873-61282892 | Msa0779880:intron | 20.0% |
!! | TATAAATCATATTGAGAGTT+GGG | + | chr5_2:61282874-61282893 | Msa0779880:intron | 20.0% |
!! | TAACAAGAACTATATATACA+TGG | + | chr5_2:61283259-61283278 | Msa0779880:intron | 20.0% |
!!! | TATTTTCTATATTTGAGGAA+TGG | - | chr5_2:61283538-61283557 | None:intergenic | 20.0% |
!!! | ATTATGAGTATATACGTTTT+TGG | - | chr5_2:61284133-61284152 | None:intergenic | 20.0% |
!!! | CTGAACCTTAAATTTTTTTA+CGG | + | chr5_2:61284221-61284240 | Msa0779880:intron | 20.0% |
!! | AAACACCGTAAAAAAATTTA+AGG | - | chr5_2:61284229-61284248 | None:intergenic | 20.0% |
!! | TAAAGATAATATTGCCTTTA+TGG | + | chr5_2:61284632-61284651 | Msa0779880:intron | 20.0% |
!! | ATTGATACTAGTAATTATCT+TGG | + | chr5_2:61284708-61284727 | Msa0779880:intron | 20.0% |
!!! | AATTTAGCAAAGTCTTATTA+TGG | + | chr5_2:61285231-61285250 | Msa0779880:intron | 20.0% |
!! | TAGTTTGAAAAACATTTGAA+TGG | + | chr5_2:61285431-61285450 | Msa0779880:intron | 20.0% |
!! | AGATATCAGTATATATAATG+AGG | + | chr5_2:61285493-61285512 | Msa0779880:intron | 20.0% |
!! | GATATCAGTATATATAATGA+GGG | + | chr5_2:61285494-61285513 | Msa0779880:intron | 20.0% |
!!! | CAATTTATATTTGATTTCTG+AGG | + | chr5_2:61286100-61286119 | Msa0779880:intron | 20.0% |
!!! | TTTCATGTATTTTGTTTGTG+TGG | + | chr5_2:61281627-61281646 | Msa0779880:intron | 25.0% |
! | AACAAATTATCCCAAATTTG+GGG | - | chr5_2:61281690-61281709 | None:intergenic | 25.0% |
! | CAACAAATTATCCCAAATTT+GGG | - | chr5_2:61281691-61281710 | None:intergenic | 25.0% |
! | TCAACAAATTATCCCAAATT+TGG | - | chr5_2:61281692-61281711 | None:intergenic | 25.0% |
!!! | AGGTTTTTTATAAGCAACAA+AGG | - | chr5_2:61281881-61281900 | None:intergenic | 25.0% |
! | AAACGAGATTACTAAATAAG+AGG | + | chr5_2:61282222-61282241 | Msa0779880:intron | 25.0% |
!! | TGCTTAATGGTTTTTAATAC+AGG | + | chr5_2:61282348-61282367 | Msa0779880:intron | 25.0% |
!! | GCTTAATGGTTTTTAATACA+GGG | + | chr5_2:61282349-61282368 | Msa0779880:intron | 25.0% |
! | ATTGAGAACTTCATAAATGA+AGG | + | chr5_2:61282716-61282735 | Msa0779880:CDS | 25.0% |
! | AGTAACCAAACTGAAAAAAA+AGG | + | chr5_2:61282748-61282767 | Msa0779880:CDS | 25.0% |
! | GTAACCAAACTGAAAAAAAA+GGG | + | chr5_2:61282749-61282768 | Msa0779880:CDS | 25.0% |
! | ATATACCTGAAATAAACTAC+AGG | - | chr5_2:61283030-61283049 | None:intergenic | 25.0% |
! | GAACTATATATACATGGAAA+TGG | + | chr5_2:61283265-61283284 | Msa0779880:intron | 25.0% |
!!! | CAGAGTATTTTCTATATTTG+AGG | - | chr5_2:61283543-61283562 | None:intergenic | 25.0% |
! | CTCAAATATAGAAAATACTC+TGG | + | chr5_2:61283541-61283560 | Msa0779880:intron | 25.0% |
!! | ATGGCAGTTTTTATTAATGT+AGG | + | chr5_2:61283786-61283805 | Msa0779880:intron | 25.0% |
!! | TACTCTTAGTATTTTCAACT+GGG | + | chr5_2:61283875-61283894 | Msa0779880:intron | 25.0% |
! | GTTGTAAAGACATAAGAAAA+AGG | - | chr5_2:61283986-61284005 | None:intergenic | 25.0% |
! | TATGTCTTTACAACTAAAAC+TGG | + | chr5_2:61283992-61284011 | Msa0779880:intron | 25.0% |
! | ATGTCTTTACAACTAAAACT+GGG | + | chr5_2:61283993-61284012 | Msa0779880:intron | 25.0% |
! | GTAAAATTTATACCTTGCTT+GGG | - | chr5_2:61284041-61284060 | None:intergenic | 25.0% |
! | TGTAAAATTTATACCTTGCT+TGG | - | chr5_2:61284042-61284061 | None:intergenic | 25.0% |
!! | CGTAAAAAAATTTAAGGTTC+AGG | - | chr5_2:61284223-61284242 | None:intergenic | 25.0% |
!!! | CTGAACCTTAGATTTTTTTA+CGG | + | chr5_2:61284281-61284300 | Msa0779880:intron | 25.0% |
! | TAACACCGTAAAAAAATCTA+AGG | - | chr5_2:61284289-61284308 | None:intergenic | 25.0% |
! | AGCATCTTAAAAAAGTTATC+AGG | - | chr5_2:61284595-61284614 | None:intergenic | 25.0% |
!! | CTGATAAAGTTTTTATGTCA+TGG | + | chr5_2:61284748-61284767 | Msa0779880:intron | 25.0% |
! | TTTGCTAAATTGAGTGAATA+TGG | - | chr5_2:61285222-61285241 | None:intergenic | 25.0% |
! | TCAACAAAGAACTTATATCA+AGG | + | chr5_2:61285652-61285671 | Msa0779880:CDS | 25.0% |
! | CAACAAAGAACTTATATCAA+GGG | + | chr5_2:61285653-61285672 | Msa0779880:CDS | 25.0% |
! | AACAAAGAACTTATATCAAG+GGG | + | chr5_2:61285654-61285673 | Msa0779880:CDS | 25.0% |
! | CACTATAGTTAGATATCAAA+TGG | - | chr5_2:61285787-61285806 | None:intergenic | 25.0% |
! | CATTTGATATCTAACTATAG+TGG | + | chr5_2:61285785-61285804 | Msa0779880:intron | 25.0% |
! | AAATCATTTAACCCTATTCA+AGG | + | chr5_2:61285877-61285896 | Msa0779880:intron | 25.0% |
! | AACTAACTATTGGATATACA+AGG | - | chr5_2:61286291-61286310 | None:intergenic | 25.0% |
TAAACTTAACATGCTAACAG+CGG | + | chr5_2:61281351-61281370 | Msa0779880:CDS | 30.0% | |
TACTATCACAACTCTACATT+TGG | + | chr5_2:61281827-61281846 | Msa0779880:CDS | 30.0% | |
TCGTTAACTATCACTTATCA+AGG | - | chr5_2:61281901-61281920 | None:intergenic | 30.0% | |
TGATAGTTAACGATGTTTGT+AGG | + | chr5_2:61281908-61281927 | Msa0779880:intron | 30.0% | |
!! | ATTCTTTTTCACCAATCGAA+GGG | - | chr5_2:61281955-61281974 | None:intergenic | 30.0% |
!! | TATTCTTTTTCACCAATCGA+AGG | - | chr5_2:61281956-61281975 | None:intergenic | 30.0% |
AACAAATGAACATTAGCACT+TGG | - | chr5_2:61282017-61282036 | None:intergenic | 30.0% | |
AGTGCTAATGTTCATTTGTT+TGG | + | chr5_2:61282017-61282036 | Msa0779880:CDS | 30.0% | |
GTGCTAATGTTCATTTGTTT+GGG | + | chr5_2:61282018-61282037 | Msa0779880:CDS | 30.0% | |
CATACATTCATGATGCTTAA+TGG | + | chr5_2:61282335-61282354 | Msa0779880:intron | 30.0% | |
AAAGAATTAACACGAGTGTT+AGG | - | chr5_2:61282429-61282448 | None:intergenic | 30.0% | |
TCAGGTGTTTATGACTATAT+TGG | + | chr5_2:61282448-61282467 | Msa0779880:intron | 30.0% | |
CAATATCTATTCAAATTGGC+TGG | + | chr5_2:61282579-61282598 | Msa0779880:CDS | 30.0% | |
ATTAAATGCAAATGTACCTC+TGG | - | chr5_2:61282620-61282639 | None:intergenic | 30.0% | |
TAAACAAATGGCTTAACCTT+TGG | + | chr5_2:61282655-61282674 | Msa0779880:intron | 30.0% | |
AAACAAATGGCTTAACCTTT+GGG | + | chr5_2:61282656-61282675 | Msa0779880:intron | 30.0% | |
TAAAATTTGCAGAATCCCAA+AGG | - | chr5_2:61282674-61282693 | None:intergenic | 30.0% | |
! | GGATTCTGCAAATTTTATAC+AGG | + | chr5_2:61282677-61282696 | Msa0779880:intron | 30.0% |
!!! | GAAACCCTTTTTTTTCAGTT+TGG | - | chr5_2:61282756-61282775 | None:intergenic | 30.0% |
ATATTTCCTGTTTATAGAGC+AGG | + | chr5_2:61283046-61283065 | Msa0779880:intron | 30.0% | |
TATTTCCTGTTTATAGAGCA+GGG | + | chr5_2:61283047-61283066 | Msa0779880:intron | 30.0% | |
AATACAAGTCATGAGAACTA+AGG | - | chr5_2:61283380-61283399 | None:intergenic | 30.0% | |
AATAATATCCAAAGGGTCAA+AGG | + | chr5_2:61283679-61283698 | Msa0779880:CDS | 30.0% | |
GATGCTAATTACATTGATGA+TGG | + | chr5_2:61283767-61283786 | Msa0779880:intron | 30.0% | |
TATTTACTATAACAGATGGG+AGG | + | chr5_2:61283838-61283857 | Msa0779880:intron | 30.0% | |
! | CTACTCTTAGTATTTTCAAC+TGG | + | chr5_2:61283874-61283893 | Msa0779880:intron | 30.0% |
!!! | AAACTGGGAATTTTGAAGTA+TGG | + | chr5_2:61284008-61284027 | Msa0779880:intron | 30.0% |
! | CGTAAAAAAATCTAAGGTTC+AGG | - | chr5_2:61284283-61284302 | None:intergenic | 30.0% |
!!! | CCTTGAATTTTTTTGACACT+GGG | - | chr5_2:61284382-61284401 | None:intergenic | 30.0% |
CATATAGCAATGATATACCA+TGG | + | chr5_2:61284531-61284550 | Msa0779880:intron | 30.0% | |
AGGAAAGATCAATATAGTTC+AGG | - | chr5_2:61284575-61284594 | None:intergenic | 30.0% | |
CAAATTTAACGAGACCATAA+AGG | - | chr5_2:61284649-61284668 | None:intergenic | 30.0% | |
! | AGCTATATTACCATTTTCAC+TGG | + | chr5_2:61285360-61285379 | Msa0779880:intron | 30.0% |
! | GCTATATTACCATTTTCACT+GGG | + | chr5_2:61285361-61285380 | Msa0779880:intron | 30.0% |
TATATATAATGAGGGAAGCA+TGG | + | chr5_2:61285502-61285521 | Msa0779880:intron | 30.0% | |
GATGACATTACTTACTTTGT+AGG | + | chr5_2:61285591-61285610 | Msa0779880:intron | 30.0% | |
TAACTATGAGAAACTTGATG+AGG | + | chr5_2:61285620-61285639 | Msa0779880:CDS | 30.0% | |
TTGATATCTAACTATAGTGG+CGG | + | chr5_2:61285788-61285807 | Msa0779880:intron | 30.0% | |
GATATATCGAACCTTGAATA+GGG | - | chr5_2:61285891-61285910 | None:intergenic | 30.0% | |
AGATATATCGAACCTTGAAT+AGG | - | chr5_2:61285892-61285911 | None:intergenic | 30.0% | |
AGTGATTAACTACTTCATCA+AGG | - | chr5_2:61285947-61285966 | None:intergenic | 30.0% | |
TTGAGGATCTTATATATCCA+GGG | - | chr5_2:61286063-61286082 | None:intergenic | 30.0% | |
ATTCAAAAAGGGATATCTTG+AGG | - | chr5_2:61286080-61286099 | None:intergenic | 30.0% | |
!! | TTATATTTGATTTCTGAGGC+AGG | + | chr5_2:61286104-61286123 | Msa0779880:intron | 30.0% |
TAAAACATACAGTCATTGCT+CGG | - | chr5_2:61286238-61286257 | None:intergenic | 30.0% | |
TATTGCTATAGCCAAATTGA+AGG | + | chr5_2:61286431-61286450 | Msa0779880:CDS | 30.0% | |
TTGAAATCAAAGTCACCAGT+GGG | - | chr5_2:61281301-61281320 | None:intergenic | 35.0% | |
!! | AAACTTGTTGAAGCCAGTAA+CGG | - | chr5_2:61281326-61281345 | None:intergenic | 35.0% |
! | GTCTTGAAAATCATTTTGCG+AGG | + | chr5_2:61281403-61281422 | Msa0779880:intron | 35.0% |
TGTTAATGTGTTTGTGTCTG+AGG | + | chr5_2:61281543-61281562 | Msa0779880:intron | 35.0% | |
ACTGTATCACTGATCAAAGA+CGG | - | chr5_2:61281584-61281603 | None:intergenic | 35.0% | |
!! | AATTTGTTGAAAGCAGCTTG+TGG | + | chr5_2:61281702-61281721 | Msa0779880:CDS | 35.0% |
AGATATACAGCAGAAATACG+AGG | - | chr5_2:61281729-61281748 | None:intergenic | 35.0% | |
AATGAACATTAGCACTTGGA+GGG | - | chr5_2:61282013-61282032 | None:intergenic | 35.0% | |
AAATGAACATTAGCACTTGG+AGG | - | chr5_2:61282014-61282033 | None:intergenic | 35.0% | |
! | TGTTCATTTGTTTGGGTTCA+CGG | + | chr5_2:61282025-61282044 | Msa0779880:CDS | 35.0% |
! | GTTGAAGAGACATTTGTTAG+AGG | + | chr5_2:61282047-61282066 | Msa0779880:CDS | 35.0% |
GTTTAAAGAGATGCAATGCA+AGG | - | chr5_2:61282091-61282110 | None:intergenic | 35.0% | |
GTGTATAAATCCTTCAGGAT+AGG | - | chr5_2:61282149-61282168 | None:intergenic | 35.0% | |
!! | TAATCTCGTTTTTGTGTCCT+CGG | - | chr5_2:61282213-61282232 | None:intergenic | 35.0% |
ACACTCGTGTTAATTCTTTC+AGG | + | chr5_2:61282430-61282449 | Msa0779880:intron | 35.0% | |
! | GAACCACAAGTTGAAAGAAT+TGG | + | chr5_2:61282475-61282494 | Msa0779880:CDS | 35.0% |
TTGCCAATTCTTTCAACTTG+TGG | - | chr5_2:61282481-61282500 | None:intergenic | 35.0% | |
ATTGGCAAATATAAAAGGGC+AGG | + | chr5_2:61282493-61282512 | Msa0779880:CDS | 35.0% | |
!! | ATCTTCAGACATGGTTTTAC+GGG | - | chr5_2:61282530-61282549 | None:intergenic | 35.0% |
!! | GATCTTCAGACATGGTTTTA+CGG | - | chr5_2:61282531-61282550 | None:intergenic | 35.0% |
!! | ATATTGATCAAGTTGGCAAC+TGG | - | chr5_2:61282857-61282876 | None:intergenic | 35.0% |
AGTTGGGACAAAGACTAATA+GGG | + | chr5_2:61282890-61282909 | Msa0779880:intron | 35.0% | |
ATCTGCCTGTAGTTTATTTC+AGG | + | chr5_2:61283022-61283041 | Msa0779880:CDS | 35.0% | |
ATTTCCTGTTTATAGAGCAG+GGG | + | chr5_2:61283048-61283067 | Msa0779880:intron | 35.0% | |
CTTTGTCTATGCTGAAGAAA+TGG | - | chr5_2:61283093-61283112 | None:intergenic | 35.0% | |
AAATGGTTATCAGTGCAAGT+GGG | + | chr5_2:61283282-61283301 | Msa0779880:intron | 35.0% | |
!! | GATATGAGTATGACTTGCTA+TGG | + | chr5_2:61283431-61283450 | Msa0779880:intron | 35.0% |
AACCTGCTTAATGAGCTATT+TGG | - | chr5_2:61283512-61283531 | None:intergenic | 35.0% | |
TTTACCTCCTGATATTCCAA+CGG | - | chr5_2:61283581-61283600 | None:intergenic | 35.0% | |
! | TAGTATTTTCAACTGGGCAT+AGG | + | chr5_2:61283881-61283900 | Msa0779880:intron | 35.0% |
! | AAACTGCAAGAACTAGCTTA+GGG | + | chr5_2:61283954-61283973 | Msa0779880:intron | 35.0% |
AATTTATACCTTGCTTGGGA+AGG | - | chr5_2:61284037-61284056 | None:intergenic | 35.0% | |
CCCAGTGTCAAAAAAATTCA+AGG | + | chr5_2:61284379-61284398 | Msa0779880:intron | 35.0% | |
!!! | GCCTTGAATTTTTTTGACAC+TGG | - | chr5_2:61284383-61284402 | None:intergenic | 35.0% |
! | TGACTGCATTTTTAACAGAG+AGG | - | chr5_2:61284474-61284493 | None:intergenic | 35.0% |
TTCGTAAGACATGCAAGAAA+TGG | + | chr5_2:61284497-61284516 | Msa0779880:intron | 35.0% | |
TAAGACATGCAAGAAATGGT+TGG | + | chr5_2:61284501-61284520 | Msa0779880:intron | 35.0% | |
TCAGGTCATCATGAACTTTA+TGG | - | chr5_2:61284557-61284576 | None:intergenic | 35.0% | |
! | ATTTGACAACACTGCCATTT+AGG | - | chr5_2:61285065-61285084 | None:intergenic | 35.0% |
TAAATGGCAGTGTTGTCAAA+TGG | + | chr5_2:61285064-61285083 | Msa0779880:intron | 35.0% | |
!! | GATTTTTGGACAACTGTCAT+AGG | + | chr5_2:61285122-61285141 | Msa0779880:intron | 35.0% |
CTGTCATAGGAAATTTGTGA+AGG | + | chr5_2:61285135-61285154 | Msa0779880:intron | 35.0% | |
AAATCCAAACACGTCAATGT+GGG | - | chr5_2:61285188-61285207 | None:intergenic | 35.0% | |
AAAATCCAAACACGTCAATG+TGG | - | chr5_2:61285189-61285208 | None:intergenic | 35.0% | |
! | CATTGACGTGTTTGGATTTT+TGG | + | chr5_2:61285189-61285208 | Msa0779880:intron | 35.0% |
AATTGAGTGAATATGGCGAA+AGG | - | chr5_2:61285215-61285234 | None:intergenic | 35.0% | |
CAAGGGGGTGAAAAAAAATA+CGG | - | chr5_2:61285276-61285295 | None:intergenic | 35.0% | |
TAAGTGTAACATATCCGTAG+AGG | + | chr5_2:61285311-61285330 | Msa0779880:intron | 35.0% | |
GACATAAAACCCAGTGAAAA+TGG | - | chr5_2:61285373-61285392 | None:intergenic | 35.0% | |
CACTTCCGTATATTCTTCTT+GGG | + | chr5_2:61285549-61285568 | Msa0779880:intron | 35.0% | |
CAAAGCCCAAGAAGAATATA+CGG | - | chr5_2:61285557-61285576 | None:intergenic | 35.0% | |
! | CAGCTGATAATCGTTCTTTT+AGG | + | chr5_2:61285697-61285716 | Msa0779880:CDS | 35.0% |
CTTCCCTGCAATATTTGAAT+CGG | + | chr5_2:61285850-61285869 | Msa0779880:intron | 35.0% | |
TTCCCTGCAATATTTGAATC+GGG | + | chr5_2:61285851-61285870 | Msa0779880:intron | 35.0% | |
AACCCGATTCAAATATTGCA+GGG | - | chr5_2:61285856-61285875 | None:intergenic | 35.0% | |
TAACCCGATTCAAATATTGC+AGG | - | chr5_2:61285857-61285876 | None:intergenic | 35.0% | |
CGTGTGTATTCAATTAGTAC+TGG | + | chr5_2:61286009-61286028 | Msa0779880:intron | 35.0% | |
!! | TTAGTACTGGTAGCAATTGT+AGG | + | chr5_2:61286022-61286041 | Msa0779880:intron | 35.0% |
CTTGAGGATCTTATATATCC+AGG | - | chr5_2:61286064-61286083 | None:intergenic | 35.0% | |
ATAAGCATACTGTGTTCTCT+TGG | - | chr5_2:61286186-61286205 | None:intergenic | 35.0% | |
AAAACATACAGTCATTGCTC+GGG | - | chr5_2:61286237-61286256 | None:intergenic | 35.0% | |
AGGAGAAAGAACAGAAAACA+TGG | - | chr5_2:61286271-61286290 | None:intergenic | 35.0% | |
CAGTAGTGGTAACTAACTAT+TGG | - | chr5_2:61286301-61286320 | None:intergenic | 35.0% | |
!! | AGGTATATTGGCCTTCAATT+TGG | - | chr5_2:61286445-61286464 | None:intergenic | 35.0% |
CTGTCTATCTTGAGGTATAT+TGG | - | chr5_2:61286457-61286476 | None:intergenic | 35.0% | |
CAATATACCTCAAGATAGAC+AGG | + | chr5_2:61286455-61286474 | Msa0779880:CDS | 35.0% | |
GATGTCAACAATTATCCCAC+TGG | + | chr5_2:61281283-61281302 | Msa0779880:CDS | 40.0% | |
CTTGAAATCAAAGTCACCAG+TGG | - | chr5_2:61281302-61281321 | None:intergenic | 40.0% | |
! | TTTGATTTCAAGCCCGTTAC+TGG | + | chr5_2:61281310-61281329 | Msa0779880:CDS | 40.0% |
!! | AACTTGTTGAAGCCAGTAAC+GGG | - | chr5_2:61281325-61281344 | None:intergenic | 40.0% |
! | GAAAATCATTTTGCGAGGAC+AGG | + | chr5_2:61281408-61281427 | Msa0779880:intron | 40.0% |
CTGTATCACTGATCAAAGAC+GGG | - | chr5_2:61281583-61281602 | None:intergenic | 40.0% | |
ATGAACATTAGCACTTGGAG+GGG | - | chr5_2:61282012-61282031 | None:intergenic | 40.0% | |
AAGAGATGCAATGCAAGGAA+AGG | - | chr5_2:61282086-61282105 | None:intergenic | 40.0% | |
TTCAGGATAGGTGTATGTAG+CGG | - | chr5_2:61282137-61282156 | None:intergenic | 40.0% | |
CTGAAGGATTTATACACGTG+CGG | + | chr5_2:61282152-61282171 | Msa0779880:intron | 40.0% | |
!! | GAAGGGTTTGTTAAATCCTG+AGG | - | chr5_2:61282181-61282200 | None:intergenic | 40.0% |
! | AAGCATACTCTATGATGACG+AGG | + | chr5_2:61282781-61282800 | Msa0779880:CDS | 40.0% |
GAGTTGGGACAAAGACTAAT+AGG | + | chr5_2:61282889-61282908 | Msa0779880:intron | 40.0% | |
ATTAATCACATATCCGCCTG+TGG | + | chr5_2:61282946-61282965 | Msa0779880:intron | 40.0% | |
! | CTAGGTTGAAGAACAGACTT+CGG | + | chr5_2:61282983-61283002 | Msa0779880:CDS | 40.0% |
! | TAGGTTGAAGAACAGACTTC+GGG | + | chr5_2:61282984-61283003 | Msa0779880:CDS | 40.0% |
TTTCCTGTTTATAGAGCAGG+GGG | + | chr5_2:61283049-61283068 | Msa0779880:intron | 40.0% | |
GAAATGGTTATCAGTGCAAG+TGG | + | chr5_2:61283281-61283300 | Msa0779880:intron | 40.0% | |
TGCCAAATAGCTCATTAAGC+AGG | + | chr5_2:61283507-61283526 | Msa0779880:intron | 40.0% | |
AAAGAGACCGTTGGAATATC+AGG | + | chr5_2:61283571-61283590 | Msa0779880:CDS | 40.0% | |
AAACTGTACCTTTGACCCTT+TGG | - | chr5_2:61283690-61283709 | None:intergenic | 40.0% | |
! | GAAACTGCAAGAACTAGCTT+AGG | + | chr5_2:61283953-61283972 | Msa0779880:intron | 40.0% |
AGAGAGAGAACATCTTCTAG+TGG | + | chr5_2:61284061-61284080 | Msa0779880:intron | 40.0% | |
TGTTATCCTTGTGTCATGGT+AGG | - | chr5_2:61284168-61284187 | None:intergenic | 40.0% | |
CCAATGTTATCCTTGTGTCA+TGG | - | chr5_2:61284172-61284191 | None:intergenic | 40.0% | |
CCATGACACAAGGATAACAT+TGG | + | chr5_2:61284169-61284188 | Msa0779880:intron | 40.0% | |
! | GTTATCCGAATTGATAGTCC+AGG | + | chr5_2:61284407-61284426 | Msa0779880:CDS | 40.0% |
CATCATGAACTTTATGGCCA+TGG | - | chr5_2:61284551-61284570 | None:intergenic | 40.0% | |
ATGTCATGGTATGCAGAATG+TGG | + | chr5_2:61284762-61284781 | Msa0779880:intron | 40.0% | |
AGCAAGTGGAGGATACTATA+TGG | + | chr5_2:61284844-61284863 | Msa0779880:CDS | 40.0% | |
GCAGAAAATCTGACCTTAAC+TGG | + | chr5_2:61284890-61284909 | Msa0779880:CDS | 40.0% | |
CTCGAGTAAGAAAAAGCAGA+AGG | + | chr5_2:61284928-61284947 | Msa0779880:intron | 40.0% | |
TCAATGCGCTAGATCCTAAA+TGG | + | chr5_2:61285048-61285067 | Msa0779880:intron | 40.0% | |
AATCCAAACACGTCAATGTG+GGG | - | chr5_2:61285187-61285206 | None:intergenic | 40.0% | |
!! | AGCAAAGTCTTATTATGGCC+AGG | + | chr5_2:61285236-61285255 | Msa0779880:intron | 40.0% |
TACACTTACACAACCATCTC+AGG | - | chr5_2:61285299-61285318 | None:intergenic | 40.0% | |
CTATAAGACCACAACGAGAA+GGG | - | chr5_2:61285342-61285361 | None:intergenic | 40.0% | |
GGTACCATCATGAACAATCA+TGG | + | chr5_2:61285523-61285542 | Msa0779880:intron | 40.0% | |
GGAACCATGATTGTTCATGA+TGG | - | chr5_2:61285530-61285549 | None:intergenic | 40.0% | |
CCAAGAAGAATATACGGAAG+TGG | - | chr5_2:61285551-61285570 | None:intergenic | 40.0% | |
CCACTTCCGTATATTCTTCT+TGG | + | chr5_2:61285548-61285567 | Msa0779880:intron | 40.0% | |
GAGAAACTTGATGAGGAGAT+TGG | + | chr5_2:61285627-61285646 | Msa0779880:CDS | 40.0% | |
ATTATCAGCTGCAAAGAGCT+CGG | - | chr5_2:61285688-61285707 | None:intergenic | 40.0% | |
ATATCCAGGGATCCAGAAAA+GGG | - | chr5_2:61286050-61286069 | None:intergenic | 40.0% | |
TATATCCAGGGATCCAGAAA+AGG | - | chr5_2:61286051-61286070 | None:intergenic | 40.0% | |
AGAACCACACTCTATCTTTC+TGG | + | chr5_2:61286132-61286151 | Msa0779880:intron | 40.0% | |
TGTACCAGAAAGATAGAGTG+TGG | - | chr5_2:61286139-61286158 | None:intergenic | 40.0% | |
! | ACACTCTATCTTTCTGGTAC+AGG | + | chr5_2:61286138-61286157 | Msa0779880:intron | 40.0% |
ATACCTCAAGATAGACAGGT+TGG | + | chr5_2:61286459-61286478 | Msa0779880:CDS | 40.0% | |
AAACCAACCTGTCTATCTTG+AGG | - | chr5_2:61286465-61286484 | None:intergenic | 40.0% | |
! | TGTGTTTGTGTCTGAGGTGT+TGG | + | chr5_2:61281549-61281568 | Msa0779880:intron | 45.0% |
!! | GTGTCTGAGGTGTTGGATAT+CGG | + | chr5_2:61281556-61281575 | Msa0779880:intron | 45.0% |
! | AATTTGGGGCAGAAGCTGAT+CGG | - | chr5_2:61281676-61281695 | None:intergenic | 45.0% |
ATCAGCTTCTGCCCCAAATT+TGG | + | chr5_2:61281676-61281695 | Msa0779880:CDS | 45.0% | |
TCAGCTTCTGCCCCAAATTT+GGG | + | chr5_2:61281677-61281696 | Msa0779880:CDS | 45.0% | |
GTTTGTAGGAAAATGCGCTG+TGG | + | chr5_2:61281922-61281941 | Msa0779880:intron | 45.0% | |
TGAACATTAGCACTTGGAGG+GGG | - | chr5_2:61282011-61282030 | None:intergenic | 45.0% | |
GCTACATACACCTATCCTGA+AGG | + | chr5_2:61282136-61282155 | Msa0779880:intron | 45.0% | |
CGCACGTGTATAAATCCTTC+AGG | - | chr5_2:61282154-61282173 | None:intergenic | 45.0% | |
GGTTATTCCTAGCGCAAGAA+AGG | + | chr5_2:61282243-61282262 | Msa0779880:intron | 45.0% | |
TGAGAATCCTTTCTTGCGCT+AGG | - | chr5_2:61282253-61282272 | None:intergenic | 45.0% | |
CTCACGATGATCTTCAGACA+TGG | - | chr5_2:61282539-61282558 | None:intergenic | 45.0% | |
ACGAGGTACATGCAGTACTT+TGG | + | chr5_2:61282798-61282817 | Msa0779880:intron | 45.0% | |
GGACAAAGACTAATAGGGAC+TGG | + | chr5_2:61282895-61282914 | Msa0779880:intron | 45.0% | |
ATAGGGACTGGACATCATCT+TGG | + | chr5_2:61282907-61282926 | Msa0779880:intron | 45.0% | |
TATAACCTGCAAACCACAGG+CGG | - | chr5_2:61282962-61282981 | None:intergenic | 45.0% | |
AGGTATAACCTGCAAACCAC+AGG | - | chr5_2:61282965-61282984 | None:intergenic | 45.0% | |
! | GTGGTTTGCAGGTTATACCT+AGG | + | chr5_2:61282965-61282984 | Msa0779880:intron | 45.0% |
CGAAGTCTGTTCTTCAACCT+AGG | - | chr5_2:61282985-61283004 | None:intergenic | 45.0% | |
GGAGTTAGAAAAGAGACCGT+TGG | + | chr5_2:61283562-61283581 | Msa0779880:CDS | 45.0% | |
AACACTACTGATGATCCCTG+AGG | - | chr5_2:61283626-61283645 | None:intergenic | 45.0% | |
TCAGGGATCATCAGTAGTGT+TGG | + | chr5_2:61283625-61283644 | Msa0779880:CDS | 45.0% | |
!! | ATCAGTAGTGTTGGTGGCAA+AGG | + | chr5_2:61283634-61283653 | Msa0779880:CDS | 45.0% |
!! | TGGCAAAGGTATCATTGCAG+AGG | + | chr5_2:61283648-61283667 | Msa0779880:CDS | 45.0% |
TGTGACCGAGACTCAAACAA+TGG | - | chr5_2:61284342-61284361 | None:intergenic | 45.0% | |
! | ATCCGAATTGATAGTCCAGG+AGG | + | chr5_2:61284410-61284429 | Msa0779880:CDS | 45.0% |
CACCTCCTGGACTATCAATT+CGG | - | chr5_2:61284415-61284434 | None:intergenic | 45.0% | |
GCAGAATGTGGAGAGAAATC+AGG | + | chr5_2:61284774-61284793 | Msa0779880:intron | 45.0% | |
!!! | TGAAGCAACGACTGGTTTTC+TGG | - | chr5_2:61284810-61284829 | None:intergenic | 45.0% |
TCAGACATTGAAGCAACGAC+TGG | - | chr5_2:61284818-61284837 | None:intergenic | 45.0% | |
CGTTGCTTCAATGTCTGATG+TGG | + | chr5_2:61284820-61284839 | Msa0779880:CDS | 45.0% | |
TGGAGGATACTATATGGCGA+TGG | + | chr5_2:61284850-61284869 | Msa0779880:CDS | 45.0% | |
GGAGGATACTATATGGCGAT+GGG | + | chr5_2:61284851-61284870 | Msa0779880:CDS | 45.0% | |
! | GGTCAGATTTTCTGCAACGA+TGG | - | chr5_2:61284885-61284904 | None:intergenic | 45.0% |
!! | CTGACCTTAACTGGTTCGAT+TGG | + | chr5_2:61284899-61284918 | Msa0779880:CDS | 45.0% |
CACTCCAATCGAACCAGTTA+AGG | - | chr5_2:61284906-61284925 | None:intergenic | 45.0% | |
AAAAAGCAGAAGGCTGTGCA+TGG | + | chr5_2:61284938-61284957 | Msa0779880:intron | 45.0% | |
ATGGCAGTGTTGTCAAATGG+CGG | + | chr5_2:61285067-61285086 | Msa0779880:intron | 45.0% | |
! | AGACTGGCGTGACAGATTTT+TGG | + | chr5_2:61285108-61285127 | Msa0779880:intron | 45.0% |
TTGTGAAGGAATGCCCAACA+TGG | + | chr5_2:61285149-61285168 | Msa0779880:intron | 45.0% | |
TACACAACCATCTCAGGCAA+GGG | - | chr5_2:61285293-61285312 | None:intergenic | 45.0% | |
TTACACAACCATCTCAGGCA+AGG | - | chr5_2:61285294-61285313 | None:intergenic | 45.0% | |
GCTATAAGACCACAACGAGA+AGG | - | chr5_2:61285343-61285362 | None:intergenic | 45.0% | |
!! | TAGTGGCGGAGACTTTTTGT+TGG | + | chr5_2:61285802-61285821 | Msa0779880:intron | 45.0% |
!! | AGTGGCGGAGACTTTTTGTT+GGG | + | chr5_2:61285803-61285822 | Msa0779880:intron | 45.0% |
! | CGGAGACTTTTTGTTGGGAA+GGG | + | chr5_2:61285808-61285827 | Msa0779880:intron | 45.0% |
! | CAATTGTAGGTGCCCTTTTC+TGG | + | chr5_2:61286035-61286054 | Msa0779880:intron | 45.0% |
GCAAATAGCTGTGCTTCATG+TGG | - | chr5_2:61286164-61286183 | None:intergenic | 45.0% | |
! | GTGTCACTAGGTAGACAAGA+TGG | + | chr5_2:61286323-61286342 | Msa0779880:intron | 45.0% |
CTAGGTAGACAAGATGGAAG+AGG | + | chr5_2:61286329-61286348 | Msa0779880:intron | 45.0% | |
AAGATGGAAGAGGTTGCACA+GGG | + | chr5_2:61286339-61286358 | Msa0779880:CDS | 45.0% | |
CATGGTCTGGATGATGCTAT+TGG | + | chr5_2:61286393-61286412 | Msa0779880:CDS | 45.0% | |
GTCTGGATGATGCTATTGGT+GGG | + | chr5_2:61286397-61286416 | Msa0779880:CDS | 45.0% | |
TCTTCCCAGCGTGTTCAACA+CGG | + | chr5_2:61281376-61281395 | Msa0779880:CDS | 50.0% | |
ACTACCGTGTTGAACACGCT+GGG | - | chr5_2:61281383-61281402 | None:intergenic | 50.0% | |
! | ACATGTGTGAGTGTCGTGTC+TGG | - | chr5_2:61281470-61281489 | None:intergenic | 50.0% |
GTGGCTTATCTCCCTTCGAT+TGG | + | chr5_2:61281941-61281960 | Msa0779880:CDS | 50.0% | |
TATACACGTGCGGAAACCTC+AGG | + | chr5_2:61282162-61282181 | Msa0779880:intron | 50.0% | |
GATCAAGTCTCTTCTGCCAG+AGG | + | chr5_2:61282601-61282620 | Msa0779880:CDS | 50.0% | |
AGTCCCCCTGCTCTATAAAC+AGG | - | chr5_2:61283055-61283074 | None:intergenic | 50.0% | |
GAGACCGTTGGAATATCAGG+AGG | + | chr5_2:61283574-61283593 | Msa0779880:CDS | 50.0% | |
TACTGATGATCCCTGAGGCT+CGG | - | chr5_2:61283621-61283640 | None:intergenic | 50.0% | |
! | GGGATCATCAGTAGTGTTGG+TGG | + | chr5_2:61283628-61283647 | Msa0779880:CDS | 50.0% |
TATGGCTTCCTTCCCAAGCA+AGG | + | chr5_2:61284026-61284045 | Msa0779880:intron | 50.0% | |
TCCTGACCTACCATGACACA+AGG | + | chr5_2:61284159-61284178 | Msa0779880:intron | 50.0% | |
TCCTTGTGTCATGGTAGGTC+AGG | - | chr5_2:61284163-61284182 | None:intergenic | 50.0% | |
GTGCGCCATTGTTTGAGTCT+CGG | + | chr5_2:61284334-61284353 | Msa0779880:intron | 50.0% | |
ATGTCTGATGTGGCAGCAAG+TGG | + | chr5_2:61284830-61284849 | Msa0779880:CDS | 50.0% | |
GTGTTGTCAAATGGCGGTCA+TGG | + | chr5_2:61285073-61285092 | Msa0779880:intron | 50.0% | |
TGAAGGAATGCCCAACATGG+TGG | + | chr5_2:61285152-61285171 | Msa0779880:intron | 50.0% | |
!!! | ACGGATTTTAGCTGAGTGCC+TGG | - | chr5_2:61285257-61285276 | None:intergenic | 50.0% |
ACACAACCATCTCAGGCAAG+GGG | - | chr5_2:61285292-61285311 | None:intergenic | 50.0% | |
TAAGACCACAACGAGAAGGG+AGG | - | chr5_2:61285339-61285358 | None:intergenic | 50.0% | |
! | GCGGAGACTTTTTGTTGGGA+AGG | + | chr5_2:61285807-61285826 | Msa0779880:intron | 50.0% |
! | ACCACTACTGTCGTGTCACT+AGG | + | chr5_2:61286311-61286330 | Msa0779880:intron | 50.0% |
ACCTAGTGACACGACAGTAG+TGG | - | chr5_2:61286315-61286334 | None:intergenic | 50.0% | |
CAAGATGGAAGAGGTTGCAC+AGG | + | chr5_2:61286338-61286357 | Msa0779880:CDS | 50.0% | |
AGATGGAAGAGGTTGCACAG+GGG | + | chr5_2:61286340-61286359 | Msa0779880:CDS | 50.0% | |
! | GGGGAGGATTTGGAATGGTA+AGG | + | chr5_2:61286359-61286378 | Msa0779880:CDS | 50.0% |
GGTAAGGATGCAGCATCTCA+TGG | + | chr5_2:61286375-61286394 | Msa0779880:CDS | 50.0% | |
GGTCTGGATGATGCTATTGG+TGG | + | chr5_2:61286396-61286415 | Msa0779880:CDS | 50.0% | |
CACTACCGTGTTGAACACGC+TGG | - | chr5_2:61281384-61281403 | None:intergenic | 55.0% | |
GTCGTGTCTGGTGTCTACGT+GGG | - | chr5_2:61281458-61281477 | None:intergenic | 55.0% | |
TGTCGTGTCTGGTGTCTACG+TGG | - | chr5_2:61281459-61281478 | None:intergenic | 55.0% | |
AACCCTTCTCACTAGTGCCG+AGG | + | chr5_2:61282193-61282212 | Msa0779880:intron | 55.0% | |
GTCCTCGGCACTAGTGAGAA+GGG | - | chr5_2:61282198-61282217 | None:intergenic | 55.0% | |
TGTCCTCGGCACTAGTGAGA+AGG | - | chr5_2:61282199-61282218 | None:intergenic | 55.0% | |
! | CATATCCGCCTGTGGTTTGC+AGG | + | chr5_2:61282954-61282973 | Msa0779880:intron | 55.0% |
ATAGCTGTCATCCGAGCCTC+AGG | + | chr5_2:61283607-61283626 | Msa0779880:CDS | 55.0% | |
TAGCTGTCATCCGAGCCTCA+GGG | + | chr5_2:61283608-61283627 | Msa0779880:CDS | 55.0% | |
!! | GAAGCAAGAGCATCACCTCC+TGG | - | chr5_2:61284428-61284447 | None:intergenic | 55.0% |
TCTGATGTGGCAGCAAGTGG+AGG | + | chr5_2:61284833-61284852 | Msa0779880:CDS | 55.0% | |
ACACGTCAATGTGGGGCCTA+TGG | - | chr5_2:61285180-61285199 | None:intergenic | 55.0% | |
AGGCCCCACATTGACGTGTT+TGG | + | chr5_2:61285181-61285200 | Msa0779880:intron | 55.0% | |
TTTCACCCCCTTGCCTGAGA+TGG | + | chr5_2:61285283-61285302 | Msa0779880:intron | 55.0% | |
CACAACCATCTCAGGCAAGG+GGG | - | chr5_2:61285291-61285310 | None:intergenic | 55.0% | |
AGGTTGCACAGGGGAGGATT+TGG | + | chr5_2:61286349-61286368 | Msa0779880:CDS | 55.0% | |
GCACAGGGGAGGATTTGGAA+TGG | + | chr5_2:61286354-61286373 | Msa0779880:CDS | 55.0% | |
GGATGCAGCATCTCATGGTC+TGG | + | chr5_2:61286380-61286399 | Msa0779880:CDS | 55.0% | |
!! | GGTGTCTACGTGGGTGCTGA+GGG | - | chr5_2:61281449-61281468 | None:intergenic | 60.0% |
! | TGGTGTCTACGTGGGTGCTG+AGG | - | chr5_2:61281450-61281469 | None:intergenic | 60.0% |
TGTCACGCCAGTCTGCCATG+GGG | - | chr5_2:61285102-61285121 | None:intergenic | 60.0% | |
CTGTCACGCCAGTCTGCCAT+GGG | - | chr5_2:61285103-61285122 | None:intergenic | 60.0% | |
TCTGTCACGCCAGTCTGCCA+TGG | - | chr5_2:61285104-61285123 | None:intergenic | 60.0% | |
GCCTATGGCGCCACCATGTT+GGG | - | chr5_2:61285165-61285184 | None:intergenic | 60.0% | |
CGAGAAGGGAGGAGCCTCTA+CGG | - | chr5_2:61285328-61285347 | None:intergenic | 60.0% | |
AGGCTCCTCCCTTCTCGTTG+TGG | + | chr5_2:61285331-61285350 | Msa0779880:intron | 60.0% | |
! | GGTGCCCTTTTCTGGATCCC+TGG | + | chr5_2:61286043-61286062 | Msa0779880:intron | 60.0% |
TGGAAGAGGTTGCACAGGGG+AGG | + | chr5_2:61286343-61286362 | Msa0779880:CDS | 60.0% | |
GTCACGCCAGTCTGCCATGG+GGG | - | chr5_2:61285101-61285120 | None:intergenic | 65.0% | |
! | GCCCAACATGGTGGCGCCAT+AGG | + | chr5_2:61285161-61285180 | Msa0779880:intron | 65.0% |
GGCCTATGGCGCCACCATGT+TGG | - | chr5_2:61285166-61285185 | None:intergenic | 65.0% | |
ATGGCGCCCCCATGGCAGAC+TGG | + | chr5_2:61285092-61285111 | Msa0779880:intron | 70.0% | |
TGGCGGTCATGGCGCCCCCA+TGG | + | chr5_2:61285084-61285103 | Msa0779880:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_2 | gene | 61281271 | 61286503 | 61281271 | ID=Msa0779880;Name=Msa0779880 |
chr5_2 | mRNA | 61281271 | 61286503 | 61281271 | ID=Msa0779880-mRNA-1;Parent=Msa0779880;Name=Msa0779880-mRNA-1;_AED=0.26;_eAED=0.29;_QI=0|0.54|0.41|1|0.90|0.91|12|0|510 |
chr5_2 | exon | 61281271 | 61281397 | 61281271 | ID=Msa0779880-mRNA-1:exon:18083;Parent=Msa0779880-mRNA-1 |
chr5_2 | exon | 61281673 | 61281857 | 61281673 | ID=Msa0779880-mRNA-1:exon:18084;Parent=Msa0779880-mRNA-1 |
chr5_2 | exon | 61281930 | 61282068 | 61281930 | ID=Msa0779880-mRNA-1:exon:18085;Parent=Msa0779880-mRNA-1 |
chr5_2 | exon | 61282452 | 61282622 | 61282452 | ID=Msa0779880-mRNA-1:exon:18086;Parent=Msa0779880-mRNA-1 |
chr5_2 | exon | 61282699 | 61282802 | 61282699 | ID=Msa0779880-mRNA-1:exon:18087;Parent=Msa0779880-mRNA-1 |
chr5_2 | exon | 61282976 | 61283043 | 61282976 | ID=Msa0779880-mRNA-1:exon:18088;Parent=Msa0779880-mRNA-1 |
chr5_2 | exon | 61283552 | 61283700 | 61283552 | ID=Msa0779880-mRNA-1:exon:18089;Parent=Msa0779880-mRNA-1 |
chr5_2 | exon | 61284384 | 61284453 | 61284384 | ID=Msa0779880-mRNA-1:exon:18090;Parent=Msa0779880-mRNA-1 |
chr5_2 | exon | 61284778 | 61284932 | 61284778 | ID=Msa0779880-mRNA-1:exon:18091;Parent=Msa0779880-mRNA-1 |
chr5_2 | exon | 61285613 | 61285718 | 61285613 | ID=Msa0779880-mRNA-1:exon:18092;Parent=Msa0779880-mRNA-1 |
chr5_2 | exon | 61286160 | 61286247 | 61286160 | ID=Msa0779880-mRNA-1:exon:18093;Parent=Msa0779880-mRNA-1 |
chr5_2 | exon | 61286333 | 61286503 | 61286333 | ID=Msa0779880-mRNA-1:exon:18094;Parent=Msa0779880-mRNA-1 |
chr5_2 | CDS | 61281271 | 61281397 | 61281271 | ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1 |
chr5_2 | CDS | 61281673 | 61281857 | 61281673 | ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1 |
chr5_2 | CDS | 61281930 | 61282068 | 61281930 | ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1 |
chr5_2 | CDS | 61282452 | 61282622 | 61282452 | ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1 |
chr5_2 | CDS | 61282699 | 61282802 | 61282699 | ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1 |
chr5_2 | CDS | 61282976 | 61283043 | 61282976 | ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1 |
chr5_2 | CDS | 61283552 | 61283700 | 61283552 | ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1 |
chr5_2 | CDS | 61284384 | 61284453 | 61284384 | ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1 |
chr5_2 | CDS | 61284778 | 61284932 | 61284778 | ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1 |
chr5_2 | CDS | 61285613 | 61285718 | 61285613 | ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1 |
chr5_2 | CDS | 61286160 | 61286247 | 61286160 | ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1 |
chr5_2 | CDS | 61286333 | 61286503 | 61286333 | ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1 |
Gene Sequence |
Protein sequence |