AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0779880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0779880 MtrunA17_Chr4g0061881 70.286 525 117 4 7 503 70 583 0.0 717
Msa0779880 MtrunA17_Chr2g0307851 62.977 524 156 4 7 503 83 595 0.0 630
Msa0779880 MtrunA17_Chr4g0061841 62.342 316 30 3 58 373 8 234 6.89e-123 359
Msa0779880 MtrunA17_Chr5g0437391 44.267 375 129 11 111 480 1 300 3.74e-79 251
Msa0779880 MtrunA17_Chr4g0073611 45.714 315 120 8 61 370 4 272 6.93e-76 241
Msa0779880 MtrunA17_Chr4g0076561 59.314 204 53 2 263 466 13 186 3.79e-72 227
Msa0779880 MtrunA17_Chr5g0408331 41.854 356 129 9 5 357 32 312 2.42e-71 229
Msa0779880 MtrunA17_Chr4g0061831 83.962 106 17 0 401 506 9 114 7.84e-57 185
Msa0779880 MtrunA17_Chr8g0344851 59.412 170 58 5 339 505 1 162 5.13e-52 175
Msa0779880 MtrunA17_Chr4g0069071 34.115 384 219 10 47 421 13 371 3.34e-51 178
Msa0779880 MtrunA17_Chr4g0064001 57.746 142 46 3 364 505 4 131 2.19e-39 142
Msa0779880 MtrunA17_Chr8g0344821 59.406 101 39 1 405 505 5 103 2.03e-29 112
Msa0779880 MtrunA17_Chr4g0076571 53.211 109 40 2 54 162 1 98 1.24e-27 106
Msa0779880 MtrunA17_Chr8g0344831 54.545 121 48 2 240 360 5 118 1.23e-26 104
Msa0779880 MtrunA17_Chr5g0437451 44.355 124 45 3 385 505 46 148 1.20e-21 91.7
Msa0779880 MtrunA17_Chr4g0073621 74.545 55 12 1 453 505 1 55 1.20e-19 83.2
Msa0779880 MtrunA17_Chr4g0063991 58.228 79 27 2 261 339 1 73 8.75e-16 72.4
Msa0779880 MtrunA17_Chr5g0408341 72.917 48 13 0 458 505 1 48 1.19e-15 73.9
Msa0779880 MtrunA17_Chr5g0437441 39.796 98 52 3 22 115 11 105 7.47e-15 70.5
Msa0779880 MtrunA17_Chr4g0069081 50.746 67 33 0 439 505 7 73 2.44e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0779880 AT1G73990.1 56.579 532 193 5 1 505 83 603 0.0 577
Msa0779880 AT1G73990.2 54.564 482 181 5 1 455 83 553 7.56e-173 500

Find 115 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACAAATTATCCCAAATT+TGG 0.074756 5_2:-61281689 None:intergenic
ATCAGCTTCTGCCCCAAATT+TGG 0.137847 5_2:+61281676 Msa0779880:CDS
ATCTGCCTGTAGTTTATTTC+AGG 0.183849 5_2:+61283022 Msa0779880:CDS
AGTGCTAATGTTCATTTGTT+TGG 0.210576 5_2:+61282017 Msa0779880:CDS
CAACAAATTATCCCAAATTT+GGG 0.242638 5_2:-61281688 None:intergenic
TCAGGTGTTTATGACTATAT+TGG 0.243093 5_2:+61282448 Msa0779880:intron
AGGTATATTGGCCTTCAATT+TGG 0.261660 5_2:-61286442 None:intergenic
AAAGAATTGGCAAATATAAA+AGG 0.266174 5_2:+61282488 Msa0779880:CDS
TAGACAATATCTATTCAAAT+TGG 0.281442 5_2:+61282575 Msa0779880:CDS
TTTGATTTCAAGCCCGTTAC+TGG 0.288674 5_2:+61281310 Msa0779880:CDS
GTGCTAATGTTCATTTGTTT+GGG 0.293778 5_2:+61282018 Msa0779880:CDS
GCAGAAAATCTGACCTTAAC+TGG 0.308465 5_2:+61284890 Msa0779880:CDS
AAACTGTACCTTTGACCCTT+TGG 0.329288 5_2:-61283687 None:intergenic
AAAGAGACCGTTGGAATATC+AGG 0.330013 5_2:+61283571 Msa0779880:CDS
AGGTTGCACAGGGGAGGATT+TGG 0.339975 5_2:+61286349 Msa0779880:CDS
CTGTCTATCTTGAGGTATAT+TGG 0.347144 5_2:-61286454 None:intergenic
TCAGCTTCTGCCCCAAATTT+GGG 0.348845 5_2:+61281677 Msa0779880:CDS
TGTTCATTTGTTTGGGTTCA+CGG 0.350788 5_2:+61282025 Msa0779880:CDS
ATCTTAAATTTCAGAAAATC+AGG 0.363167 5_2:+61281804 Msa0779880:CDS
ATCAACAAACATCAAAATAA+AGG 0.366232 5_2:-61286492 None:intergenic
GAGAAACTTGATGAGGAGAT+TGG 0.376602 5_2:+61285627 Msa0779880:CDS
TACTATCACAACTCTACATT+TGG 0.378668 5_2:+61281827 Msa0779880:CDS
GAACCACAAGTTGAAAGAAT+TGG 0.382028 5_2:+61282475 Msa0779880:CDS
GTTGAAGAGACATTTGTTAG+AGG 0.387410 5_2:+61282047 Msa0779880:CDS
TGTTAATTTAAATTGTGGTT+GGG 0.399160 5_2:+61281755 Msa0779880:CDS
CACTCCAATCGAACCAGTTA+AGG 0.402912 5_2:-61284903 None:intergenic
ATAGCTGTCATCCGAGCCTC+AGG 0.410065 5_2:+61283607 Msa0779880:CDS
AGCAAGTGGAGGATACTATA+TGG 0.425036 5_2:+61284844 Msa0779880:CDS
CACCTCCTGGACTATCAATT+CGG 0.430092 5_2:-61284412 None:intergenic
GAAGCAAGAGCATCACCTCC+TGG 0.433755 5_2:-61284425 None:intergenic
ATAAGCATACTGTGTTCTCT+TGG 0.441843 5_2:-61286183 None:intergenic
CATGGTCTGGATGATGCTAT+TGG 0.452792 5_2:+61286393 Msa0779880:CDS
TTGTTAATTTAAATTGTGGT+TGG 0.453345 5_2:+61281754 Msa0779880:CDS
AACTTGTTGAAGCCAGTAAC+GGG 0.454036 5_2:-61281322 None:intergenic
TCAACAAAGAACTTATATCA+AGG 0.457344 5_2:+61285652 Msa0779880:CDS
CAAATTGTTAATTTAAATTG+TGG 0.458430 5_2:+61281750 Msa0779880:CDS
TTGCCAATTCTTTCAACTTG+TGG 0.463182 5_2:-61282478 None:intergenic
ATCAGTAGTGTTGGTGGCAA+AGG 0.481394 5_2:+61283634 Msa0779880:CDS
GGATGCAGCATCTCATGGTC+TGG 0.483325 5_2:+61286380 Msa0779880:CDS
CAATATCTATTCAAATTGGC+TGG 0.486130 5_2:+61282579 Msa0779880:CDS
CTGACCTTAACTGGTTCGAT+TGG 0.490609 5_2:+61284899 Msa0779880:CDS
TAGGTTGAAGAACAGACTTC+GGG 0.490615 5_2:+61282984 Msa0779880:CDS
GTGGCTTATCTCCCTTCGAT+TGG 0.490733 5_2:+61281941 Msa0779880:CDS
GCAGAATGTGGAGAGAAATC+AGG 0.494576 5_2:+61284774 Msa0779880:intron
ATTGAGAACTTCATAAATGA+AGG 0.504321 5_2:+61282716 Msa0779880:CDS
AATAATATCCAAAGGGTCAA+AGG 0.511511 5_2:+61283679 Msa0779880:CDS
TATTGCTATAGCCAAATTGA+AGG 0.515312 5_2:+61286431 Msa0779880:CDS
CTCAAATATAGAAAATACTC+TGG 0.515563 5_2:+61283541 Msa0779880:intron
CAAGATGGAAGAGGTTGCAC+AGG 0.515973 5_2:+61286338 Msa0779880:CDS
AAGAATTGGCAAATATAAAA+GGG 0.517870 5_2:+61282489 Msa0779880:CDS
CTAGGTTGAAGAACAGACTT+CGG 0.518668 5_2:+61282983 Msa0779880:CDS
AAAACATACAGTCATTGCTC+GGG 0.518906 5_2:-61286234 None:intergenic
GTGGTTTGCAGGTTATACCT+AGG 0.518958 5_2:+61282965 Msa0779880:intron
ATTGGCAAATATAAAAGGGC+AGG 0.519140 5_2:+61282493 Msa0779880:CDS
CAACAAAGAACTTATATCAA+GGG 0.521238 5_2:+61285653 Msa0779880:CDS
CAATATACCTCAAGATAGAC+AGG 0.525916 5_2:+61286455 Msa0779880:CDS
TAAAACATACAGTCATTGCT+CGG 0.540206 5_2:-61286235 None:intergenic
GGTCTGGATGATGCTATTGG+TGG 0.552898 5_2:+61286396 Msa0779880:CDS
GGGATCATCAGTAGTGTTGG+TGG 0.555957 5_2:+61283628 Msa0779880:CDS
TACTGATGATCCCTGAGGCT+CGG 0.557201 5_2:-61283618 None:intergenic
GTTTATTAATAATATCCAAA+GGG 0.557808 5_2:+61283672 Msa0779880:CDS
TTTACCTCCTGATATTCCAA+CGG 0.558713 5_2:-61283578 None:intergenic
GGAGTTAGAAAAGAGACCGT+TGG 0.562047 5_2:+61283562 Msa0779880:CDS
TGGAGGATACTATATGGCGA+TGG 0.564573 5_2:+61284850 Msa0779880:CDS
AACAAAGAACTTATATCAAG+GGG 0.566859 5_2:+61285654 Msa0779880:CDS
CGAAGTCTGTTCTTCAACCT+AGG 0.567178 5_2:-61282982 None:intergenic
AAATGAACATTAGCACTTGG+AGG 0.567253 5_2:-61282011 None:intergenic
ATTATCAGCTGCAAAGAGCT+CGG 0.572201 5_2:-61285685 None:intergenic
AAACTTGTTGAAGCCAGTAA+CGG 0.575334 5_2:-61281323 None:intergenic
TCAGGGATCATCAGTAGTGT+TGG 0.575368 5_2:+61283625 Msa0779880:CDS
GATGTCAACAATTATCCCAC+TGG 0.577595 5_2:+61281283 Msa0779880:CDS
ATGAACATTAGCACTTGGAG+GGG 0.577818 5_2:-61282009 None:intergenic
GTCTGGATGATGCTATTGGT+GGG 0.581159 5_2:+61286397 Msa0779880:CDS
AATGAACATTAGCACTTGGA+GGG 0.581968 5_2:-61282010 None:intergenic
TCAGACATTGAAGCAACGAC+TGG 0.588059 5_2:-61284815 None:intergenic
GGGGAGGATTTGGAATGGTA+AGG 0.588905 5_2:+61286359 Msa0779880:CDS
CTCACGATGATCTTCAGACA+TGG 0.591082 5_2:-61282536 None:intergenic
GGTAAGGATGCAGCATCTCA+TGG 0.592197 5_2:+61286375 Msa0779880:CDS
CTAGGTAGACAAGATGGAAG+AGG 0.592383 5_2:+61286329 Msa0779880:intron
ATGTCTGATGTGGCAGCAAG+TGG 0.596100 5_2:+61284830 Msa0779880:CDS
GTTATCCGAATTGATAGTCC+AGG 0.597364 5_2:+61284407 Msa0779880:CDS
GGAGGATACTATATGGCGAT+GGG 0.597758 5_2:+61284851 Msa0779880:CDS
ATATACCTGAAATAAACTAC+AGG 0.598226 5_2:-61283027 None:intergenic
AGTTTATTAATAATATCCAA+AGG 0.601934 5_2:+61283671 Msa0779880:CDS
ATACCTCAAGATAGACAGGT+TGG 0.608175 5_2:+61286459 Msa0779880:CDS
GCAAATAGCTGTGCTTCATG+TGG 0.609314 5_2:-61286161 None:intergenic
AACAAATGAACATTAGCACT+TGG 0.609748 5_2:-61282014 None:intergenic
AAGATGGAAGAGGTTGCACA+GGG 0.610115 5_2:+61286339 Msa0779880:CDS
TGGAAGAGGTTGCACAGGGG+AGG 0.610833 5_2:+61286343 Msa0779880:CDS
CACTACCGTGTTGAACACGC+TGG 0.611142 5_2:-61281381 None:intergenic
TGAACATTAGCACTTGGAGG+GGG 0.611697 5_2:-61282008 None:intergenic
AATTTGGGGCAGAAGCTGAT+CGG 0.612370 5_2:-61281673 None:intergenic
AAACCAACCTGTCTATCTTG+AGG 0.613884 5_2:-61286462 None:intergenic
TAACTATGAGAAACTTGATG+AGG 0.620592 5_2:+61285620 Msa0779880:CDS
GTGTCACTAGGTAGACAAGA+TGG 0.621852 5_2:+61286323 Msa0779880:intron
AATTTGTTGAAAGCAGCTTG+TGG 0.634019 5_2:+61281702 Msa0779880:CDS
CGTTGCTTCAATGTCTGATG+TGG 0.635354 5_2:+61284820 Msa0779880:CDS
ACTACCGTGTTGAACACGCT+GGG 0.641817 5_2:-61281380 None:intergenic
AACAAATTATCCCAAATTTG+GGG 0.643034 5_2:-61281687 None:intergenic
TTGAAATCAAAGTCACCAGT+GGG 0.647790 5_2:-61281298 None:intergenic
TCTTCCCAGCGTGTTCAACA+CGG 0.656709 5_2:+61281376 Msa0779880:CDS
GATCAAGTCTCTTCTGCCAG+AGG 0.657201 5_2:+61282601 Msa0779880:CDS
TAGCTGTCATCCGAGCCTCA+GGG 0.663090 5_2:+61283608 Msa0779880:CDS
TCTGATGTGGCAGCAAGTGG+AGG 0.665663 5_2:+61284833 Msa0779880:CDS
TGGCAAAGGTATCATTGCAG+AGG 0.674393 5_2:+61283648 Msa0779880:CDS
GAGACCGTTGGAATATCAGG+AGG 0.676771 5_2:+61283574 Msa0779880:CDS
GCACAGGGGAGGATTTGGAA+TGG 0.677665 5_2:+61286354 Msa0779880:CDS
CTTGAAATCAAAGTCACCAG+TGG 0.693626 5_2:-61281299 None:intergenic
ATCCGAATTGATAGTCCAGG+AGG 0.700913 5_2:+61284410 Msa0779880:CDS
AAGCATACTCTATGATGACG+AGG 0.712058 5_2:+61282781 Msa0779880:CDS
AGATATACAGCAGAAATACG+AGG 0.738061 5_2:-61281726 None:intergenic
TAAACTTAACATGCTAACAG+CGG 0.746056 5_2:+61281351 Msa0779880:CDS
GTTTGTAGGAAAATGCGCTG+TGG 0.760280 5_2:+61281922 Msa0779880:intron
AACACTACTGATGATCCCTG+AGG 0.769155 5_2:-61283623 None:intergenic
AGATGGAAGAGGTTGCACAG+GGG 0.806994 5_2:+61286340 Msa0779880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAATCTAAATTTAAAAA+AGG - chr5_2:61282390-61282409 None:intergenic 10.0%
!! TATTATTAAAAAATCTGTAT+TGG + chr5_2:61283313-61283332 Msa0779880:intron 10.0%
!!! AATATAAATTGATTCAAAAA+GGG - chr5_2:61286091-61286110 None:intergenic 10.0%
!!! AAATATAAATTGATTCAAAA+AGG - chr5_2:61286092-61286111 None:intergenic 10.0%
!! CAAATTGTTAATTTAAATTG+TGG + chr5_2:61281750-61281769 Msa0779880:CDS 15.0%
!!! AACAGAATTTTATCAAATTA+AGG - chr5_2:61283141-61283160 None:intergenic 15.0%
!! ATATAAATTTGATAGAAAAC+AGG - chr5_2:61283460-61283479 None:intergenic 15.0%
!! AGTTTATTAATAATATCCAA+AGG + chr5_2:61283671-61283690 Msa0779880:CDS 15.0%
!! GTTTATTAATAATATCCAAA+GGG + chr5_2:61283672-61283691 Msa0779880:CDS 15.0%
!! ATATTATTTACTATAACAGA+TGG + chr5_2:61283834-61283853 Msa0779880:intron 15.0%
!! TATTATTTACTATAACAGAT+GGG + chr5_2:61283835-61283854 Msa0779880:intron 15.0%
!!! TATATTTTTCAAAATCATCA+AGG - chr5_2:61283917-61283936 None:intergenic 15.0%
!! ATATATGAACAAAATCTATT+AGG - chr5_2:61285725-61285744 None:intergenic 15.0%
!! GTTCTTTGAATTATATTATT+AGG + chr5_2:61285915-61285934 Msa0779880:intron 15.0%
!! TTGTTAATTTAAATTGTGGT+TGG + chr5_2:61281754-61281773 Msa0779880:CDS 20.0%
!! TGTTAATTTAAATTGTGGTT+GGG + chr5_2:61281755-61281774 Msa0779880:CDS 20.0%
!! ATCTTAAATTTCAGAAAATC+AGG + chr5_2:61281804-61281823 Msa0779880:CDS 20.0%
!! AAAGAATTGGCAAATATAAA+AGG + chr5_2:61282488-61282507 Msa0779880:CDS 20.0%
!! AAGAATTGGCAAATATAAAA+GGG + chr5_2:61282489-61282508 Msa0779880:CDS 20.0%
!! TAGACAATATCTATTCAAAT+TGG + chr5_2:61282575-61282594 Msa0779880:CDS 20.0%
!!! CATTTGTTTAAGATACAATT+AGG - chr5_2:61282645-61282664 None:intergenic 20.0%
!! CTAATTGTATCTTAAACAAA+TGG + chr5_2:61282643-61282662 Msa0779880:intron 20.0%
!! ATGATTTATATTGATCAAGT+TGG - chr5_2:61282864-61282883 None:intergenic 20.0%
!! ATATAAATCATATTGAGAGT+TGG + chr5_2:61282873-61282892 Msa0779880:intron 20.0%
!! TATAAATCATATTGAGAGTT+GGG + chr5_2:61282874-61282893 Msa0779880:intron 20.0%
!! TAACAAGAACTATATATACA+TGG + chr5_2:61283259-61283278 Msa0779880:intron 20.0%
!!! TATTTTCTATATTTGAGGAA+TGG - chr5_2:61283538-61283557 None:intergenic 20.0%
!!! ATTATGAGTATATACGTTTT+TGG - chr5_2:61284133-61284152 None:intergenic 20.0%
!!! CTGAACCTTAAATTTTTTTA+CGG + chr5_2:61284221-61284240 Msa0779880:intron 20.0%
!! AAACACCGTAAAAAAATTTA+AGG - chr5_2:61284229-61284248 None:intergenic 20.0%
!! TAAAGATAATATTGCCTTTA+TGG + chr5_2:61284632-61284651 Msa0779880:intron 20.0%
!! ATTGATACTAGTAATTATCT+TGG + chr5_2:61284708-61284727 Msa0779880:intron 20.0%
!!! AATTTAGCAAAGTCTTATTA+TGG + chr5_2:61285231-61285250 Msa0779880:intron 20.0%
!! TAGTTTGAAAAACATTTGAA+TGG + chr5_2:61285431-61285450 Msa0779880:intron 20.0%
!! AGATATCAGTATATATAATG+AGG + chr5_2:61285493-61285512 Msa0779880:intron 20.0%
!! GATATCAGTATATATAATGA+GGG + chr5_2:61285494-61285513 Msa0779880:intron 20.0%
!!! CAATTTATATTTGATTTCTG+AGG + chr5_2:61286100-61286119 Msa0779880:intron 20.0%
!!! TTTCATGTATTTTGTTTGTG+TGG + chr5_2:61281627-61281646 Msa0779880:intron 25.0%
! AACAAATTATCCCAAATTTG+GGG - chr5_2:61281690-61281709 None:intergenic 25.0%
! CAACAAATTATCCCAAATTT+GGG - chr5_2:61281691-61281710 None:intergenic 25.0%
! TCAACAAATTATCCCAAATT+TGG - chr5_2:61281692-61281711 None:intergenic 25.0%
!!! AGGTTTTTTATAAGCAACAA+AGG - chr5_2:61281881-61281900 None:intergenic 25.0%
! AAACGAGATTACTAAATAAG+AGG + chr5_2:61282222-61282241 Msa0779880:intron 25.0%
!! TGCTTAATGGTTTTTAATAC+AGG + chr5_2:61282348-61282367 Msa0779880:intron 25.0%
!! GCTTAATGGTTTTTAATACA+GGG + chr5_2:61282349-61282368 Msa0779880:intron 25.0%
! ATTGAGAACTTCATAAATGA+AGG + chr5_2:61282716-61282735 Msa0779880:CDS 25.0%
! AGTAACCAAACTGAAAAAAA+AGG + chr5_2:61282748-61282767 Msa0779880:CDS 25.0%
! GTAACCAAACTGAAAAAAAA+GGG + chr5_2:61282749-61282768 Msa0779880:CDS 25.0%
! ATATACCTGAAATAAACTAC+AGG - chr5_2:61283030-61283049 None:intergenic 25.0%
! GAACTATATATACATGGAAA+TGG + chr5_2:61283265-61283284 Msa0779880:intron 25.0%
!!! CAGAGTATTTTCTATATTTG+AGG - chr5_2:61283543-61283562 None:intergenic 25.0%
! CTCAAATATAGAAAATACTC+TGG + chr5_2:61283541-61283560 Msa0779880:intron 25.0%
!! ATGGCAGTTTTTATTAATGT+AGG + chr5_2:61283786-61283805 Msa0779880:intron 25.0%
!! TACTCTTAGTATTTTCAACT+GGG + chr5_2:61283875-61283894 Msa0779880:intron 25.0%
! GTTGTAAAGACATAAGAAAA+AGG - chr5_2:61283986-61284005 None:intergenic 25.0%
! TATGTCTTTACAACTAAAAC+TGG + chr5_2:61283992-61284011 Msa0779880:intron 25.0%
! ATGTCTTTACAACTAAAACT+GGG + chr5_2:61283993-61284012 Msa0779880:intron 25.0%
! GTAAAATTTATACCTTGCTT+GGG - chr5_2:61284041-61284060 None:intergenic 25.0%
! TGTAAAATTTATACCTTGCT+TGG - chr5_2:61284042-61284061 None:intergenic 25.0%
!! CGTAAAAAAATTTAAGGTTC+AGG - chr5_2:61284223-61284242 None:intergenic 25.0%
!!! CTGAACCTTAGATTTTTTTA+CGG + chr5_2:61284281-61284300 Msa0779880:intron 25.0%
! TAACACCGTAAAAAAATCTA+AGG - chr5_2:61284289-61284308 None:intergenic 25.0%
! AGCATCTTAAAAAAGTTATC+AGG - chr5_2:61284595-61284614 None:intergenic 25.0%
!! CTGATAAAGTTTTTATGTCA+TGG + chr5_2:61284748-61284767 Msa0779880:intron 25.0%
! TTTGCTAAATTGAGTGAATA+TGG - chr5_2:61285222-61285241 None:intergenic 25.0%
! TCAACAAAGAACTTATATCA+AGG + chr5_2:61285652-61285671 Msa0779880:CDS 25.0%
! CAACAAAGAACTTATATCAA+GGG + chr5_2:61285653-61285672 Msa0779880:CDS 25.0%
! AACAAAGAACTTATATCAAG+GGG + chr5_2:61285654-61285673 Msa0779880:CDS 25.0%
! CACTATAGTTAGATATCAAA+TGG - chr5_2:61285787-61285806 None:intergenic 25.0%
! CATTTGATATCTAACTATAG+TGG + chr5_2:61285785-61285804 Msa0779880:intron 25.0%
! AAATCATTTAACCCTATTCA+AGG + chr5_2:61285877-61285896 Msa0779880:intron 25.0%
! AACTAACTATTGGATATACA+AGG - chr5_2:61286291-61286310 None:intergenic 25.0%
TAAACTTAACATGCTAACAG+CGG + chr5_2:61281351-61281370 Msa0779880:CDS 30.0%
TACTATCACAACTCTACATT+TGG + chr5_2:61281827-61281846 Msa0779880:CDS 30.0%
TCGTTAACTATCACTTATCA+AGG - chr5_2:61281901-61281920 None:intergenic 30.0%
TGATAGTTAACGATGTTTGT+AGG + chr5_2:61281908-61281927 Msa0779880:intron 30.0%
!! ATTCTTTTTCACCAATCGAA+GGG - chr5_2:61281955-61281974 None:intergenic 30.0%
!! TATTCTTTTTCACCAATCGA+AGG - chr5_2:61281956-61281975 None:intergenic 30.0%
AACAAATGAACATTAGCACT+TGG - chr5_2:61282017-61282036 None:intergenic 30.0%
AGTGCTAATGTTCATTTGTT+TGG + chr5_2:61282017-61282036 Msa0779880:CDS 30.0%
GTGCTAATGTTCATTTGTTT+GGG + chr5_2:61282018-61282037 Msa0779880:CDS 30.0%
CATACATTCATGATGCTTAA+TGG + chr5_2:61282335-61282354 Msa0779880:intron 30.0%
AAAGAATTAACACGAGTGTT+AGG - chr5_2:61282429-61282448 None:intergenic 30.0%
TCAGGTGTTTATGACTATAT+TGG + chr5_2:61282448-61282467 Msa0779880:intron 30.0%
CAATATCTATTCAAATTGGC+TGG + chr5_2:61282579-61282598 Msa0779880:CDS 30.0%
ATTAAATGCAAATGTACCTC+TGG - chr5_2:61282620-61282639 None:intergenic 30.0%
TAAACAAATGGCTTAACCTT+TGG + chr5_2:61282655-61282674 Msa0779880:intron 30.0%
AAACAAATGGCTTAACCTTT+GGG + chr5_2:61282656-61282675 Msa0779880:intron 30.0%
TAAAATTTGCAGAATCCCAA+AGG - chr5_2:61282674-61282693 None:intergenic 30.0%
! GGATTCTGCAAATTTTATAC+AGG + chr5_2:61282677-61282696 Msa0779880:intron 30.0%
!!! GAAACCCTTTTTTTTCAGTT+TGG - chr5_2:61282756-61282775 None:intergenic 30.0%
ATATTTCCTGTTTATAGAGC+AGG + chr5_2:61283046-61283065 Msa0779880:intron 30.0%
TATTTCCTGTTTATAGAGCA+GGG + chr5_2:61283047-61283066 Msa0779880:intron 30.0%
AATACAAGTCATGAGAACTA+AGG - chr5_2:61283380-61283399 None:intergenic 30.0%
AATAATATCCAAAGGGTCAA+AGG + chr5_2:61283679-61283698 Msa0779880:CDS 30.0%
GATGCTAATTACATTGATGA+TGG + chr5_2:61283767-61283786 Msa0779880:intron 30.0%
TATTTACTATAACAGATGGG+AGG + chr5_2:61283838-61283857 Msa0779880:intron 30.0%
! CTACTCTTAGTATTTTCAAC+TGG + chr5_2:61283874-61283893 Msa0779880:intron 30.0%
!!! AAACTGGGAATTTTGAAGTA+TGG + chr5_2:61284008-61284027 Msa0779880:intron 30.0%
! CGTAAAAAAATCTAAGGTTC+AGG - chr5_2:61284283-61284302 None:intergenic 30.0%
!!! CCTTGAATTTTTTTGACACT+GGG - chr5_2:61284382-61284401 None:intergenic 30.0%
CATATAGCAATGATATACCA+TGG + chr5_2:61284531-61284550 Msa0779880:intron 30.0%
AGGAAAGATCAATATAGTTC+AGG - chr5_2:61284575-61284594 None:intergenic 30.0%
CAAATTTAACGAGACCATAA+AGG - chr5_2:61284649-61284668 None:intergenic 30.0%
! AGCTATATTACCATTTTCAC+TGG + chr5_2:61285360-61285379 Msa0779880:intron 30.0%
! GCTATATTACCATTTTCACT+GGG + chr5_2:61285361-61285380 Msa0779880:intron 30.0%
TATATATAATGAGGGAAGCA+TGG + chr5_2:61285502-61285521 Msa0779880:intron 30.0%
GATGACATTACTTACTTTGT+AGG + chr5_2:61285591-61285610 Msa0779880:intron 30.0%
TAACTATGAGAAACTTGATG+AGG + chr5_2:61285620-61285639 Msa0779880:CDS 30.0%
TTGATATCTAACTATAGTGG+CGG + chr5_2:61285788-61285807 Msa0779880:intron 30.0%
GATATATCGAACCTTGAATA+GGG - chr5_2:61285891-61285910 None:intergenic 30.0%
AGATATATCGAACCTTGAAT+AGG - chr5_2:61285892-61285911 None:intergenic 30.0%
AGTGATTAACTACTTCATCA+AGG - chr5_2:61285947-61285966 None:intergenic 30.0%
TTGAGGATCTTATATATCCA+GGG - chr5_2:61286063-61286082 None:intergenic 30.0%
ATTCAAAAAGGGATATCTTG+AGG - chr5_2:61286080-61286099 None:intergenic 30.0%
!! TTATATTTGATTTCTGAGGC+AGG + chr5_2:61286104-61286123 Msa0779880:intron 30.0%
TAAAACATACAGTCATTGCT+CGG - chr5_2:61286238-61286257 None:intergenic 30.0%
TATTGCTATAGCCAAATTGA+AGG + chr5_2:61286431-61286450 Msa0779880:CDS 30.0%
TTGAAATCAAAGTCACCAGT+GGG - chr5_2:61281301-61281320 None:intergenic 35.0%
!! AAACTTGTTGAAGCCAGTAA+CGG - chr5_2:61281326-61281345 None:intergenic 35.0%
! GTCTTGAAAATCATTTTGCG+AGG + chr5_2:61281403-61281422 Msa0779880:intron 35.0%
TGTTAATGTGTTTGTGTCTG+AGG + chr5_2:61281543-61281562 Msa0779880:intron 35.0%
ACTGTATCACTGATCAAAGA+CGG - chr5_2:61281584-61281603 None:intergenic 35.0%
!! AATTTGTTGAAAGCAGCTTG+TGG + chr5_2:61281702-61281721 Msa0779880:CDS 35.0%
AGATATACAGCAGAAATACG+AGG - chr5_2:61281729-61281748 None:intergenic 35.0%
AATGAACATTAGCACTTGGA+GGG - chr5_2:61282013-61282032 None:intergenic 35.0%
AAATGAACATTAGCACTTGG+AGG - chr5_2:61282014-61282033 None:intergenic 35.0%
! TGTTCATTTGTTTGGGTTCA+CGG + chr5_2:61282025-61282044 Msa0779880:CDS 35.0%
! GTTGAAGAGACATTTGTTAG+AGG + chr5_2:61282047-61282066 Msa0779880:CDS 35.0%
GTTTAAAGAGATGCAATGCA+AGG - chr5_2:61282091-61282110 None:intergenic 35.0%
GTGTATAAATCCTTCAGGAT+AGG - chr5_2:61282149-61282168 None:intergenic 35.0%
!! TAATCTCGTTTTTGTGTCCT+CGG - chr5_2:61282213-61282232 None:intergenic 35.0%
ACACTCGTGTTAATTCTTTC+AGG + chr5_2:61282430-61282449 Msa0779880:intron 35.0%
! GAACCACAAGTTGAAAGAAT+TGG + chr5_2:61282475-61282494 Msa0779880:CDS 35.0%
TTGCCAATTCTTTCAACTTG+TGG - chr5_2:61282481-61282500 None:intergenic 35.0%
ATTGGCAAATATAAAAGGGC+AGG + chr5_2:61282493-61282512 Msa0779880:CDS 35.0%
!! ATCTTCAGACATGGTTTTAC+GGG - chr5_2:61282530-61282549 None:intergenic 35.0%
!! GATCTTCAGACATGGTTTTA+CGG - chr5_2:61282531-61282550 None:intergenic 35.0%
!! ATATTGATCAAGTTGGCAAC+TGG - chr5_2:61282857-61282876 None:intergenic 35.0%
AGTTGGGACAAAGACTAATA+GGG + chr5_2:61282890-61282909 Msa0779880:intron 35.0%
ATCTGCCTGTAGTTTATTTC+AGG + chr5_2:61283022-61283041 Msa0779880:CDS 35.0%
ATTTCCTGTTTATAGAGCAG+GGG + chr5_2:61283048-61283067 Msa0779880:intron 35.0%
CTTTGTCTATGCTGAAGAAA+TGG - chr5_2:61283093-61283112 None:intergenic 35.0%
AAATGGTTATCAGTGCAAGT+GGG + chr5_2:61283282-61283301 Msa0779880:intron 35.0%
!! GATATGAGTATGACTTGCTA+TGG + chr5_2:61283431-61283450 Msa0779880:intron 35.0%
AACCTGCTTAATGAGCTATT+TGG - chr5_2:61283512-61283531 None:intergenic 35.0%
TTTACCTCCTGATATTCCAA+CGG - chr5_2:61283581-61283600 None:intergenic 35.0%
! TAGTATTTTCAACTGGGCAT+AGG + chr5_2:61283881-61283900 Msa0779880:intron 35.0%
! AAACTGCAAGAACTAGCTTA+GGG + chr5_2:61283954-61283973 Msa0779880:intron 35.0%
AATTTATACCTTGCTTGGGA+AGG - chr5_2:61284037-61284056 None:intergenic 35.0%
CCCAGTGTCAAAAAAATTCA+AGG + chr5_2:61284379-61284398 Msa0779880:intron 35.0%
!!! GCCTTGAATTTTTTTGACAC+TGG - chr5_2:61284383-61284402 None:intergenic 35.0%
! TGACTGCATTTTTAACAGAG+AGG - chr5_2:61284474-61284493 None:intergenic 35.0%
TTCGTAAGACATGCAAGAAA+TGG + chr5_2:61284497-61284516 Msa0779880:intron 35.0%
TAAGACATGCAAGAAATGGT+TGG + chr5_2:61284501-61284520 Msa0779880:intron 35.0%
TCAGGTCATCATGAACTTTA+TGG - chr5_2:61284557-61284576 None:intergenic 35.0%
! ATTTGACAACACTGCCATTT+AGG - chr5_2:61285065-61285084 None:intergenic 35.0%
TAAATGGCAGTGTTGTCAAA+TGG + chr5_2:61285064-61285083 Msa0779880:intron 35.0%
!! GATTTTTGGACAACTGTCAT+AGG + chr5_2:61285122-61285141 Msa0779880:intron 35.0%
CTGTCATAGGAAATTTGTGA+AGG + chr5_2:61285135-61285154 Msa0779880:intron 35.0%
AAATCCAAACACGTCAATGT+GGG - chr5_2:61285188-61285207 None:intergenic 35.0%
AAAATCCAAACACGTCAATG+TGG - chr5_2:61285189-61285208 None:intergenic 35.0%
! CATTGACGTGTTTGGATTTT+TGG + chr5_2:61285189-61285208 Msa0779880:intron 35.0%
AATTGAGTGAATATGGCGAA+AGG - chr5_2:61285215-61285234 None:intergenic 35.0%
CAAGGGGGTGAAAAAAAATA+CGG - chr5_2:61285276-61285295 None:intergenic 35.0%
TAAGTGTAACATATCCGTAG+AGG + chr5_2:61285311-61285330 Msa0779880:intron 35.0%
GACATAAAACCCAGTGAAAA+TGG - chr5_2:61285373-61285392 None:intergenic 35.0%
CACTTCCGTATATTCTTCTT+GGG + chr5_2:61285549-61285568 Msa0779880:intron 35.0%
CAAAGCCCAAGAAGAATATA+CGG - chr5_2:61285557-61285576 None:intergenic 35.0%
! CAGCTGATAATCGTTCTTTT+AGG + chr5_2:61285697-61285716 Msa0779880:CDS 35.0%
CTTCCCTGCAATATTTGAAT+CGG + chr5_2:61285850-61285869 Msa0779880:intron 35.0%
TTCCCTGCAATATTTGAATC+GGG + chr5_2:61285851-61285870 Msa0779880:intron 35.0%
AACCCGATTCAAATATTGCA+GGG - chr5_2:61285856-61285875 None:intergenic 35.0%
TAACCCGATTCAAATATTGC+AGG - chr5_2:61285857-61285876 None:intergenic 35.0%
CGTGTGTATTCAATTAGTAC+TGG + chr5_2:61286009-61286028 Msa0779880:intron 35.0%
!! TTAGTACTGGTAGCAATTGT+AGG + chr5_2:61286022-61286041 Msa0779880:intron 35.0%
CTTGAGGATCTTATATATCC+AGG - chr5_2:61286064-61286083 None:intergenic 35.0%
ATAAGCATACTGTGTTCTCT+TGG - chr5_2:61286186-61286205 None:intergenic 35.0%
AAAACATACAGTCATTGCTC+GGG - chr5_2:61286237-61286256 None:intergenic 35.0%
AGGAGAAAGAACAGAAAACA+TGG - chr5_2:61286271-61286290 None:intergenic 35.0%
CAGTAGTGGTAACTAACTAT+TGG - chr5_2:61286301-61286320 None:intergenic 35.0%
!! AGGTATATTGGCCTTCAATT+TGG - chr5_2:61286445-61286464 None:intergenic 35.0%
CTGTCTATCTTGAGGTATAT+TGG - chr5_2:61286457-61286476 None:intergenic 35.0%
CAATATACCTCAAGATAGAC+AGG + chr5_2:61286455-61286474 Msa0779880:CDS 35.0%
GATGTCAACAATTATCCCAC+TGG + chr5_2:61281283-61281302 Msa0779880:CDS 40.0%
CTTGAAATCAAAGTCACCAG+TGG - chr5_2:61281302-61281321 None:intergenic 40.0%
! TTTGATTTCAAGCCCGTTAC+TGG + chr5_2:61281310-61281329 Msa0779880:CDS 40.0%
!! AACTTGTTGAAGCCAGTAAC+GGG - chr5_2:61281325-61281344 None:intergenic 40.0%
! GAAAATCATTTTGCGAGGAC+AGG + chr5_2:61281408-61281427 Msa0779880:intron 40.0%
CTGTATCACTGATCAAAGAC+GGG - chr5_2:61281583-61281602 None:intergenic 40.0%
ATGAACATTAGCACTTGGAG+GGG - chr5_2:61282012-61282031 None:intergenic 40.0%
AAGAGATGCAATGCAAGGAA+AGG - chr5_2:61282086-61282105 None:intergenic 40.0%
TTCAGGATAGGTGTATGTAG+CGG - chr5_2:61282137-61282156 None:intergenic 40.0%
CTGAAGGATTTATACACGTG+CGG + chr5_2:61282152-61282171 Msa0779880:intron 40.0%
!! GAAGGGTTTGTTAAATCCTG+AGG - chr5_2:61282181-61282200 None:intergenic 40.0%
! AAGCATACTCTATGATGACG+AGG + chr5_2:61282781-61282800 Msa0779880:CDS 40.0%
GAGTTGGGACAAAGACTAAT+AGG + chr5_2:61282889-61282908 Msa0779880:intron 40.0%
ATTAATCACATATCCGCCTG+TGG + chr5_2:61282946-61282965 Msa0779880:intron 40.0%
! CTAGGTTGAAGAACAGACTT+CGG + chr5_2:61282983-61283002 Msa0779880:CDS 40.0%
! TAGGTTGAAGAACAGACTTC+GGG + chr5_2:61282984-61283003 Msa0779880:CDS 40.0%
TTTCCTGTTTATAGAGCAGG+GGG + chr5_2:61283049-61283068 Msa0779880:intron 40.0%
GAAATGGTTATCAGTGCAAG+TGG + chr5_2:61283281-61283300 Msa0779880:intron 40.0%
TGCCAAATAGCTCATTAAGC+AGG + chr5_2:61283507-61283526 Msa0779880:intron 40.0%
AAAGAGACCGTTGGAATATC+AGG + chr5_2:61283571-61283590 Msa0779880:CDS 40.0%
AAACTGTACCTTTGACCCTT+TGG - chr5_2:61283690-61283709 None:intergenic 40.0%
! GAAACTGCAAGAACTAGCTT+AGG + chr5_2:61283953-61283972 Msa0779880:intron 40.0%
AGAGAGAGAACATCTTCTAG+TGG + chr5_2:61284061-61284080 Msa0779880:intron 40.0%
TGTTATCCTTGTGTCATGGT+AGG - chr5_2:61284168-61284187 None:intergenic 40.0%
CCAATGTTATCCTTGTGTCA+TGG - chr5_2:61284172-61284191 None:intergenic 40.0%
CCATGACACAAGGATAACAT+TGG + chr5_2:61284169-61284188 Msa0779880:intron 40.0%
! GTTATCCGAATTGATAGTCC+AGG + chr5_2:61284407-61284426 Msa0779880:CDS 40.0%
CATCATGAACTTTATGGCCA+TGG - chr5_2:61284551-61284570 None:intergenic 40.0%
ATGTCATGGTATGCAGAATG+TGG + chr5_2:61284762-61284781 Msa0779880:intron 40.0%
AGCAAGTGGAGGATACTATA+TGG + chr5_2:61284844-61284863 Msa0779880:CDS 40.0%
GCAGAAAATCTGACCTTAAC+TGG + chr5_2:61284890-61284909 Msa0779880:CDS 40.0%
CTCGAGTAAGAAAAAGCAGA+AGG + chr5_2:61284928-61284947 Msa0779880:intron 40.0%
TCAATGCGCTAGATCCTAAA+TGG + chr5_2:61285048-61285067 Msa0779880:intron 40.0%
AATCCAAACACGTCAATGTG+GGG - chr5_2:61285187-61285206 None:intergenic 40.0%
!! AGCAAAGTCTTATTATGGCC+AGG + chr5_2:61285236-61285255 Msa0779880:intron 40.0%
TACACTTACACAACCATCTC+AGG - chr5_2:61285299-61285318 None:intergenic 40.0%
CTATAAGACCACAACGAGAA+GGG - chr5_2:61285342-61285361 None:intergenic 40.0%
GGTACCATCATGAACAATCA+TGG + chr5_2:61285523-61285542 Msa0779880:intron 40.0%
GGAACCATGATTGTTCATGA+TGG - chr5_2:61285530-61285549 None:intergenic 40.0%
CCAAGAAGAATATACGGAAG+TGG - chr5_2:61285551-61285570 None:intergenic 40.0%
CCACTTCCGTATATTCTTCT+TGG + chr5_2:61285548-61285567 Msa0779880:intron 40.0%
GAGAAACTTGATGAGGAGAT+TGG + chr5_2:61285627-61285646 Msa0779880:CDS 40.0%
ATTATCAGCTGCAAAGAGCT+CGG - chr5_2:61285688-61285707 None:intergenic 40.0%
ATATCCAGGGATCCAGAAAA+GGG - chr5_2:61286050-61286069 None:intergenic 40.0%
TATATCCAGGGATCCAGAAA+AGG - chr5_2:61286051-61286070 None:intergenic 40.0%
AGAACCACACTCTATCTTTC+TGG + chr5_2:61286132-61286151 Msa0779880:intron 40.0%
TGTACCAGAAAGATAGAGTG+TGG - chr5_2:61286139-61286158 None:intergenic 40.0%
! ACACTCTATCTTTCTGGTAC+AGG + chr5_2:61286138-61286157 Msa0779880:intron 40.0%
ATACCTCAAGATAGACAGGT+TGG + chr5_2:61286459-61286478 Msa0779880:CDS 40.0%
AAACCAACCTGTCTATCTTG+AGG - chr5_2:61286465-61286484 None:intergenic 40.0%
! TGTGTTTGTGTCTGAGGTGT+TGG + chr5_2:61281549-61281568 Msa0779880:intron 45.0%
!! GTGTCTGAGGTGTTGGATAT+CGG + chr5_2:61281556-61281575 Msa0779880:intron 45.0%
! AATTTGGGGCAGAAGCTGAT+CGG - chr5_2:61281676-61281695 None:intergenic 45.0%
ATCAGCTTCTGCCCCAAATT+TGG + chr5_2:61281676-61281695 Msa0779880:CDS 45.0%
TCAGCTTCTGCCCCAAATTT+GGG + chr5_2:61281677-61281696 Msa0779880:CDS 45.0%
GTTTGTAGGAAAATGCGCTG+TGG + chr5_2:61281922-61281941 Msa0779880:intron 45.0%
TGAACATTAGCACTTGGAGG+GGG - chr5_2:61282011-61282030 None:intergenic 45.0%
GCTACATACACCTATCCTGA+AGG + chr5_2:61282136-61282155 Msa0779880:intron 45.0%
CGCACGTGTATAAATCCTTC+AGG - chr5_2:61282154-61282173 None:intergenic 45.0%
GGTTATTCCTAGCGCAAGAA+AGG + chr5_2:61282243-61282262 Msa0779880:intron 45.0%
TGAGAATCCTTTCTTGCGCT+AGG - chr5_2:61282253-61282272 None:intergenic 45.0%
CTCACGATGATCTTCAGACA+TGG - chr5_2:61282539-61282558 None:intergenic 45.0%
ACGAGGTACATGCAGTACTT+TGG + chr5_2:61282798-61282817 Msa0779880:intron 45.0%
GGACAAAGACTAATAGGGAC+TGG + chr5_2:61282895-61282914 Msa0779880:intron 45.0%
ATAGGGACTGGACATCATCT+TGG + chr5_2:61282907-61282926 Msa0779880:intron 45.0%
TATAACCTGCAAACCACAGG+CGG - chr5_2:61282962-61282981 None:intergenic 45.0%
AGGTATAACCTGCAAACCAC+AGG - chr5_2:61282965-61282984 None:intergenic 45.0%
! GTGGTTTGCAGGTTATACCT+AGG + chr5_2:61282965-61282984 Msa0779880:intron 45.0%
CGAAGTCTGTTCTTCAACCT+AGG - chr5_2:61282985-61283004 None:intergenic 45.0%
GGAGTTAGAAAAGAGACCGT+TGG + chr5_2:61283562-61283581 Msa0779880:CDS 45.0%
AACACTACTGATGATCCCTG+AGG - chr5_2:61283626-61283645 None:intergenic 45.0%
TCAGGGATCATCAGTAGTGT+TGG + chr5_2:61283625-61283644 Msa0779880:CDS 45.0%
!! ATCAGTAGTGTTGGTGGCAA+AGG + chr5_2:61283634-61283653 Msa0779880:CDS 45.0%
!! TGGCAAAGGTATCATTGCAG+AGG + chr5_2:61283648-61283667 Msa0779880:CDS 45.0%
TGTGACCGAGACTCAAACAA+TGG - chr5_2:61284342-61284361 None:intergenic 45.0%
! ATCCGAATTGATAGTCCAGG+AGG + chr5_2:61284410-61284429 Msa0779880:CDS 45.0%
CACCTCCTGGACTATCAATT+CGG - chr5_2:61284415-61284434 None:intergenic 45.0%
GCAGAATGTGGAGAGAAATC+AGG + chr5_2:61284774-61284793 Msa0779880:intron 45.0%
!!! TGAAGCAACGACTGGTTTTC+TGG - chr5_2:61284810-61284829 None:intergenic 45.0%
TCAGACATTGAAGCAACGAC+TGG - chr5_2:61284818-61284837 None:intergenic 45.0%
CGTTGCTTCAATGTCTGATG+TGG + chr5_2:61284820-61284839 Msa0779880:CDS 45.0%
TGGAGGATACTATATGGCGA+TGG + chr5_2:61284850-61284869 Msa0779880:CDS 45.0%
GGAGGATACTATATGGCGAT+GGG + chr5_2:61284851-61284870 Msa0779880:CDS 45.0%
! GGTCAGATTTTCTGCAACGA+TGG - chr5_2:61284885-61284904 None:intergenic 45.0%
!! CTGACCTTAACTGGTTCGAT+TGG + chr5_2:61284899-61284918 Msa0779880:CDS 45.0%
CACTCCAATCGAACCAGTTA+AGG - chr5_2:61284906-61284925 None:intergenic 45.0%
AAAAAGCAGAAGGCTGTGCA+TGG + chr5_2:61284938-61284957 Msa0779880:intron 45.0%
ATGGCAGTGTTGTCAAATGG+CGG + chr5_2:61285067-61285086 Msa0779880:intron 45.0%
! AGACTGGCGTGACAGATTTT+TGG + chr5_2:61285108-61285127 Msa0779880:intron 45.0%
TTGTGAAGGAATGCCCAACA+TGG + chr5_2:61285149-61285168 Msa0779880:intron 45.0%
TACACAACCATCTCAGGCAA+GGG - chr5_2:61285293-61285312 None:intergenic 45.0%
TTACACAACCATCTCAGGCA+AGG - chr5_2:61285294-61285313 None:intergenic 45.0%
GCTATAAGACCACAACGAGA+AGG - chr5_2:61285343-61285362 None:intergenic 45.0%
!! TAGTGGCGGAGACTTTTTGT+TGG + chr5_2:61285802-61285821 Msa0779880:intron 45.0%
!! AGTGGCGGAGACTTTTTGTT+GGG + chr5_2:61285803-61285822 Msa0779880:intron 45.0%
! CGGAGACTTTTTGTTGGGAA+GGG + chr5_2:61285808-61285827 Msa0779880:intron 45.0%
! CAATTGTAGGTGCCCTTTTC+TGG + chr5_2:61286035-61286054 Msa0779880:intron 45.0%
GCAAATAGCTGTGCTTCATG+TGG - chr5_2:61286164-61286183 None:intergenic 45.0%
! GTGTCACTAGGTAGACAAGA+TGG + chr5_2:61286323-61286342 Msa0779880:intron 45.0%
CTAGGTAGACAAGATGGAAG+AGG + chr5_2:61286329-61286348 Msa0779880:intron 45.0%
AAGATGGAAGAGGTTGCACA+GGG + chr5_2:61286339-61286358 Msa0779880:CDS 45.0%
CATGGTCTGGATGATGCTAT+TGG + chr5_2:61286393-61286412 Msa0779880:CDS 45.0%
GTCTGGATGATGCTATTGGT+GGG + chr5_2:61286397-61286416 Msa0779880:CDS 45.0%
TCTTCCCAGCGTGTTCAACA+CGG + chr5_2:61281376-61281395 Msa0779880:CDS 50.0%
ACTACCGTGTTGAACACGCT+GGG - chr5_2:61281383-61281402 None:intergenic 50.0%
! ACATGTGTGAGTGTCGTGTC+TGG - chr5_2:61281470-61281489 None:intergenic 50.0%
GTGGCTTATCTCCCTTCGAT+TGG + chr5_2:61281941-61281960 Msa0779880:CDS 50.0%
TATACACGTGCGGAAACCTC+AGG + chr5_2:61282162-61282181 Msa0779880:intron 50.0%
GATCAAGTCTCTTCTGCCAG+AGG + chr5_2:61282601-61282620 Msa0779880:CDS 50.0%
AGTCCCCCTGCTCTATAAAC+AGG - chr5_2:61283055-61283074 None:intergenic 50.0%
GAGACCGTTGGAATATCAGG+AGG + chr5_2:61283574-61283593 Msa0779880:CDS 50.0%
TACTGATGATCCCTGAGGCT+CGG - chr5_2:61283621-61283640 None:intergenic 50.0%
! GGGATCATCAGTAGTGTTGG+TGG + chr5_2:61283628-61283647 Msa0779880:CDS 50.0%
TATGGCTTCCTTCCCAAGCA+AGG + chr5_2:61284026-61284045 Msa0779880:intron 50.0%
TCCTGACCTACCATGACACA+AGG + chr5_2:61284159-61284178 Msa0779880:intron 50.0%
TCCTTGTGTCATGGTAGGTC+AGG - chr5_2:61284163-61284182 None:intergenic 50.0%
GTGCGCCATTGTTTGAGTCT+CGG + chr5_2:61284334-61284353 Msa0779880:intron 50.0%
ATGTCTGATGTGGCAGCAAG+TGG + chr5_2:61284830-61284849 Msa0779880:CDS 50.0%
GTGTTGTCAAATGGCGGTCA+TGG + chr5_2:61285073-61285092 Msa0779880:intron 50.0%
TGAAGGAATGCCCAACATGG+TGG + chr5_2:61285152-61285171 Msa0779880:intron 50.0%
!!! ACGGATTTTAGCTGAGTGCC+TGG - chr5_2:61285257-61285276 None:intergenic 50.0%
ACACAACCATCTCAGGCAAG+GGG - chr5_2:61285292-61285311 None:intergenic 50.0%
TAAGACCACAACGAGAAGGG+AGG - chr5_2:61285339-61285358 None:intergenic 50.0%
! GCGGAGACTTTTTGTTGGGA+AGG + chr5_2:61285807-61285826 Msa0779880:intron 50.0%
! ACCACTACTGTCGTGTCACT+AGG + chr5_2:61286311-61286330 Msa0779880:intron 50.0%
ACCTAGTGACACGACAGTAG+TGG - chr5_2:61286315-61286334 None:intergenic 50.0%
CAAGATGGAAGAGGTTGCAC+AGG + chr5_2:61286338-61286357 Msa0779880:CDS 50.0%
AGATGGAAGAGGTTGCACAG+GGG + chr5_2:61286340-61286359 Msa0779880:CDS 50.0%
! GGGGAGGATTTGGAATGGTA+AGG + chr5_2:61286359-61286378 Msa0779880:CDS 50.0%
GGTAAGGATGCAGCATCTCA+TGG + chr5_2:61286375-61286394 Msa0779880:CDS 50.0%
GGTCTGGATGATGCTATTGG+TGG + chr5_2:61286396-61286415 Msa0779880:CDS 50.0%
CACTACCGTGTTGAACACGC+TGG - chr5_2:61281384-61281403 None:intergenic 55.0%
GTCGTGTCTGGTGTCTACGT+GGG - chr5_2:61281458-61281477 None:intergenic 55.0%
TGTCGTGTCTGGTGTCTACG+TGG - chr5_2:61281459-61281478 None:intergenic 55.0%
AACCCTTCTCACTAGTGCCG+AGG + chr5_2:61282193-61282212 Msa0779880:intron 55.0%
GTCCTCGGCACTAGTGAGAA+GGG - chr5_2:61282198-61282217 None:intergenic 55.0%
TGTCCTCGGCACTAGTGAGA+AGG - chr5_2:61282199-61282218 None:intergenic 55.0%
! CATATCCGCCTGTGGTTTGC+AGG + chr5_2:61282954-61282973 Msa0779880:intron 55.0%
ATAGCTGTCATCCGAGCCTC+AGG + chr5_2:61283607-61283626 Msa0779880:CDS 55.0%
TAGCTGTCATCCGAGCCTCA+GGG + chr5_2:61283608-61283627 Msa0779880:CDS 55.0%
!! GAAGCAAGAGCATCACCTCC+TGG - chr5_2:61284428-61284447 None:intergenic 55.0%
TCTGATGTGGCAGCAAGTGG+AGG + chr5_2:61284833-61284852 Msa0779880:CDS 55.0%
ACACGTCAATGTGGGGCCTA+TGG - chr5_2:61285180-61285199 None:intergenic 55.0%
AGGCCCCACATTGACGTGTT+TGG + chr5_2:61285181-61285200 Msa0779880:intron 55.0%
TTTCACCCCCTTGCCTGAGA+TGG + chr5_2:61285283-61285302 Msa0779880:intron 55.0%
CACAACCATCTCAGGCAAGG+GGG - chr5_2:61285291-61285310 None:intergenic 55.0%
AGGTTGCACAGGGGAGGATT+TGG + chr5_2:61286349-61286368 Msa0779880:CDS 55.0%
GCACAGGGGAGGATTTGGAA+TGG + chr5_2:61286354-61286373 Msa0779880:CDS 55.0%
GGATGCAGCATCTCATGGTC+TGG + chr5_2:61286380-61286399 Msa0779880:CDS 55.0%
!! GGTGTCTACGTGGGTGCTGA+GGG - chr5_2:61281449-61281468 None:intergenic 60.0%
! TGGTGTCTACGTGGGTGCTG+AGG - chr5_2:61281450-61281469 None:intergenic 60.0%
TGTCACGCCAGTCTGCCATG+GGG - chr5_2:61285102-61285121 None:intergenic 60.0%
CTGTCACGCCAGTCTGCCAT+GGG - chr5_2:61285103-61285122 None:intergenic 60.0%
TCTGTCACGCCAGTCTGCCA+TGG - chr5_2:61285104-61285123 None:intergenic 60.0%
GCCTATGGCGCCACCATGTT+GGG - chr5_2:61285165-61285184 None:intergenic 60.0%
CGAGAAGGGAGGAGCCTCTA+CGG - chr5_2:61285328-61285347 None:intergenic 60.0%
AGGCTCCTCCCTTCTCGTTG+TGG + chr5_2:61285331-61285350 Msa0779880:intron 60.0%
! GGTGCCCTTTTCTGGATCCC+TGG + chr5_2:61286043-61286062 Msa0779880:intron 60.0%
TGGAAGAGGTTGCACAGGGG+AGG + chr5_2:61286343-61286362 Msa0779880:CDS 60.0%
GTCACGCCAGTCTGCCATGG+GGG - chr5_2:61285101-61285120 None:intergenic 65.0%
! GCCCAACATGGTGGCGCCAT+AGG + chr5_2:61285161-61285180 Msa0779880:intron 65.0%
GGCCTATGGCGCCACCATGT+TGG - chr5_2:61285166-61285185 None:intergenic 65.0%
ATGGCGCCCCCATGGCAGAC+TGG + chr5_2:61285092-61285111 Msa0779880:intron 70.0%
TGGCGGTCATGGCGCCCCCA+TGG + chr5_2:61285084-61285103 Msa0779880:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 61281271 61286503 61281271 ID=Msa0779880;Name=Msa0779880
chr5_2 mRNA 61281271 61286503 61281271 ID=Msa0779880-mRNA-1;Parent=Msa0779880;Name=Msa0779880-mRNA-1;_AED=0.26;_eAED=0.29;_QI=0|0.54|0.41|1|0.90|0.91|12|0|510
chr5_2 exon 61281271 61281397 61281271 ID=Msa0779880-mRNA-1:exon:18083;Parent=Msa0779880-mRNA-1
chr5_2 exon 61281673 61281857 61281673 ID=Msa0779880-mRNA-1:exon:18084;Parent=Msa0779880-mRNA-1
chr5_2 exon 61281930 61282068 61281930 ID=Msa0779880-mRNA-1:exon:18085;Parent=Msa0779880-mRNA-1
chr5_2 exon 61282452 61282622 61282452 ID=Msa0779880-mRNA-1:exon:18086;Parent=Msa0779880-mRNA-1
chr5_2 exon 61282699 61282802 61282699 ID=Msa0779880-mRNA-1:exon:18087;Parent=Msa0779880-mRNA-1
chr5_2 exon 61282976 61283043 61282976 ID=Msa0779880-mRNA-1:exon:18088;Parent=Msa0779880-mRNA-1
chr5_2 exon 61283552 61283700 61283552 ID=Msa0779880-mRNA-1:exon:18089;Parent=Msa0779880-mRNA-1
chr5_2 exon 61284384 61284453 61284384 ID=Msa0779880-mRNA-1:exon:18090;Parent=Msa0779880-mRNA-1
chr5_2 exon 61284778 61284932 61284778 ID=Msa0779880-mRNA-1:exon:18091;Parent=Msa0779880-mRNA-1
chr5_2 exon 61285613 61285718 61285613 ID=Msa0779880-mRNA-1:exon:18092;Parent=Msa0779880-mRNA-1
chr5_2 exon 61286160 61286247 61286160 ID=Msa0779880-mRNA-1:exon:18093;Parent=Msa0779880-mRNA-1
chr5_2 exon 61286333 61286503 61286333 ID=Msa0779880-mRNA-1:exon:18094;Parent=Msa0779880-mRNA-1
chr5_2 CDS 61281271 61281397 61281271 ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1
chr5_2 CDS 61281673 61281857 61281673 ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1
chr5_2 CDS 61281930 61282068 61281930 ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1
chr5_2 CDS 61282452 61282622 61282452 ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1
chr5_2 CDS 61282699 61282802 61282699 ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1
chr5_2 CDS 61282976 61283043 61282976 ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1
chr5_2 CDS 61283552 61283700 61283552 ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1
chr5_2 CDS 61284384 61284453 61284384 ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1
chr5_2 CDS 61284778 61284932 61284778 ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1
chr5_2 CDS 61285613 61285718 61285613 ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1
chr5_2 CDS 61286160 61286247 61286160 ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1
chr5_2 CDS 61286333 61286503 61286333 ID=Msa0779880-mRNA-1:cds;Parent=Msa0779880-mRNA-1
Gene Sequence

>Msa0779880

ATGACTAATCGTGATGTCAACAATTATCCCACTGGTGACTTTGATTTCAAGCCCGTTACTGGCTTCAACAAGTTTCTCGTTAAACTTAACATGCTAACAGCGGTCTCTTCCCAGCGTGTTCAACACGCCGATCAGCTTCTGCCCCAAATTTGGGATAATTTGTTGAAAGCAGCTTGTGGTCCTCGTATTTCTGCTGTATATCTTCAAATTGTTAATTTAAATTGTGGTTGGGCTAAAGCTGATGAAATTCGAAGACAAATCTTAAATTTCAGAAAATCAGGTACTATCACAACTCTACATTTGGAGAATTTCGAAAATGCGCTGTGGCTTATCTCCCTTCGATTGGTGAAAAAGAATATTACATTGCTTGTGCATGTGAAGAAATATATGCCCCCTCCAAGTGCTAATGTTCATTTGTTTGGGTTCACGGTTGAAGAGACATTTGTTAGAGGTGTTTATGACTATATTGGAATTGAACCACAAGTTGAAAGAATTGGCAAATATAAAAGGGCAGGAGATAGACTAACCCGTAAAACCATGTCTGAAGATCATCGTGAGATGCTGACTGCATTATTAGACAATATCTATTCAAATTGGCTGGATCAAGTCTCTTCTGCCAGAGGAAAGATAAGAGAAGATATTGAGAACTTCATAAATGAAGGTGTCTATCGAGTAACCAAACTGAAAAAAAAGGGTTTCATAACAAGCATACTCTATGATGACGAGGTTATACCTAGGTTGAAGAACAGACTTCGGGTGAAATCAAACAAATATCTGCCTGTAGTTTATTTCAGAAAATACTCTGGAGTTAGAAAAGAGACCGTTGGAATATCAGGAGGTAAAGAACAGATAGCTGTCATCCGAGCCTCAGGGATCATCAGTAGTGTTGGTGGCAAAGGTATCATTGCAGAGGAGTTTATTAATAATATCCAAAGGGTCAAAGTGTCAAAAAAATTCAAGGCTGCTGTTATCCGAATTGATAGTCCAGGAGGTGATGCTCTTGCTTCTGATTTAATGTGGAGAGAAATCAGGCTTCTTGCTGCCAGAAAACCAGTCGTTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGATACTATATGGCGATGGGAGCTGATGCCATCGTTGCAGAAAATCTGACCTTAACTGGTTCGATTGGAGTGCTCTCGAGAAAATTTAACTATGAGAAACTTGATGAGGAGATTGGTTTCAACAAAGAACTTATATCAAGGGGTAAATATGCCGAGCTCTTTGCAGCTGATAATCGTTCTTTTAGGCCACATGAAGCACAGCTATTTGCCAAGAGAACACAGTATGCTTATAAAAAATTTCGAAACAAAGCTGCTTTTTCCCGAGCAATGACTGTAGACAAGATGGAAGAGGTTGCACAGGGGAGGATTTGGAATGGTAAGGATGCAGCATCTCATGGTCTGGATGATGCTATTGGTGGGCTATCACGTGCTATTGCTATAGCCAAATTGAAGGCCAATATACCTCAAGATAGACAGGTTGGTTTGAGAACACCTTTATTTTGA

Protein sequence

>Msa0779880

MTNRDVNNYPTGDFDFKPVTGFNKFLVKLNMLTAVSSQRVQHADQLLPQIWDNLLKAACGPRISAVYLQIVNLNCGWAKADEIRRQILNFRKSGTITTLHLENFENALWLISLRLVKKNITLLVHVKKYMPPPSANVHLFGFTVEETFVRGVYDYIGIEPQVERIGKYKRAGDRLTRKTMSEDHREMLTALLDNIYSNWLDQVSSARGKIREDIENFINEGVYRVTKLKKKGFITSILYDDEVIPRLKNRLRVKSNKYLPVVYFRKYSGVRKETVGISGGKEQIAVIRASGIISSVGGKGIIAEEFINNIQRVKVSKKFKAAVIRIDSPGGDALASDLMWREIRLLAARKPVVASMSDVAASGGYYMAMGADAIVAENLTLTGSIGVLSRKFNYEKLDEEIGFNKELISRGKYAELFAADNRSFRPHEAQLFAKRTQYAYKKFRNKAAFSRAMTVDKMEEVAQGRIWNGKDAASHGLDDAIGGLSRAIAIAKLKANIPQDRQVGLRTPLF*